Query 027779
Match_columns 219
No_of_seqs 194 out of 1264
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 01:50:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 78.1 5.9 0.0002 26.4 5.6 45 113-157 8-52 (79)
2 2knc_A Integrin alpha-IIB; tra 27.0 1E+02 0.0035 18.7 4.0 37 113-149 10-46 (54)
3 3arc_T Photosystem II reaction 20.7 1.1E+02 0.0039 16.4 4.2 14 59-72 18-31 (32)
4 2k9j_B Integrin beta-3; transm 16.5 1.7E+02 0.0058 16.7 4.6 28 113-140 7-34 (43)
5 2l8s_A Integrin alpha-1; trans 9.1 3.6E+02 0.012 16.3 4.2 34 113-146 7-40 (54)
6 2rlw_A PLNF; toxin; NMR {Lacto 8.2 98 0.0033 16.3 0.4 16 171-186 4-20 (34)
7 1ldd_A APC2WHB, anaphase promo 8.0 69 0.0024 20.8 -0.4 19 54-72 7-25 (74)
8 1jmu_A Protein MU-1; protein-p 6.4 2.4E+02 0.0084 15.9 1.5 20 197-216 11-30 (41)
9 1wa7_B TIP, hypothetical 28.7 6.4 3.4E+02 0.012 13.6 1.9 13 66-78 2-14 (26)
10 4ftb_A Capsid protein beta; no 6.0 3E+02 0.01 22.7 2.4 12 57-68 64-75 (363)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=78.14 E-value=5.9 Score=26.35 Aligned_cols=45 Identities=22% Similarity=0.356 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhH
Q 027779 113 FRTAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRA 157 (219)
Q Consensus 113 ~~~~~~~~~~l~~~~~l~l~~l~~~h~~li~~N~TTiE~~~~~~~ 157 (219)
.+...+++.+++.++.+.+..+++|-+....++.--.+..++++.
T Consensus 8 ~n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 8 PDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777777777788888888888877777766666665554
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=27.04 E-value=1e+02 Score=18.74 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Q 027779 113 FRTAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTI 149 (219)
Q Consensus 113 ~~~~~~~~~~l~~~~~l~l~~l~~~h~~li~~N~TTi 149 (219)
.....+++.+++..+.+++..+..|.+-.--++.-..
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~~~ 46 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRPPL 46 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCCCc
Confidence 4566677777776666776666666665544444333
No 3
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=20.71 E-value=1.1e+02 Score=16.45 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=10.1
Q ss_pred HHHhhhcCCCCCCC
Q 027779 59 YTVAILRDPGRVPA 72 (219)
Q Consensus 59 y~~~~~t~PG~vP~ 72 (219)
|+...+.||..+|+
T Consensus 18 FFAI~FRePPri~~ 31 (32)
T 3arc_T 18 FFAIFFREPPRITK 31 (32)
T ss_dssp HHHHHTSCCCCCC-
T ss_pred HHhhhhcCCCCCCC
Confidence 55667899988875
No 4
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=16.45 E-value=1.7e+02 Score=16.68 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027779 113 FRTAYVISGLLLVPLSVALSVLLGWHIY 140 (219)
Q Consensus 113 ~~~~~~~~~~l~~~~~l~l~~l~~~h~~ 140 (219)
.+...++..+++..+.+.+..++.|-+.
T Consensus 7 ~n~~~Iv~gvi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 7 PDILVVLLSVMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEeehHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677776666676667766555
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=9.08 E-value=3.6e+02 Score=16.26 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027779 113 FRTAYVISGLLLVPLSVALSVLLGWHIYLIFHNK 146 (219)
Q Consensus 113 ~~~~~~~~~~l~~~~~l~l~~l~~~h~~li~~N~ 146 (219)
.....+++++++..+.+++..+..|-+-.--+++
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 3455666667776666666666666655444443
No 6
>2rlw_A PLNF; toxin; NMR {Lactobacillus plantarum}
Probab=8.24 E-value=98 Score=16.28 Aligned_cols=16 Identities=38% Similarity=0.750 Sum_probs=13.0
Q ss_pred CCC-hhHHHHHHHhhCC
Q 027779 171 PYD-LGIFENLTSVLGP 186 (219)
Q Consensus 171 ~yd-~G~~~N~~~v~G~ 186 (219)
.|+ +|.+.|.++..|+
T Consensus 4 aysargvrnnyksavgp 20 (34)
T 2rlw_A 4 AYSARGVRNNYKSAVGP 20 (34)
T ss_dssp SSCHHHHHHHHHHHHHH
T ss_pred hhhccchhhccccccCh
Confidence 344 6899999999986
No 7
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=7.95 E-value=69 Score=20.79 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=15.0
Q ss_pred HHHHHHHHhhhcCCCCCCC
Q 027779 54 MCVFSYTVAILRDPGRVPA 72 (219)
Q Consensus 54 l~~~sy~~~~~t~PG~vP~ 72 (219)
-..|+|++.+.|+-|..|.
T Consensus 7 ~v~w~yI~GMLtN~~slpl 25 (74)
T 1ldd_A 7 QRSLPFIEGMLTNLGAMKL 25 (74)
T ss_dssp HHHHHHHHHHHHHHCSEEH
T ss_pred HHHHHHHHHHHhcCCCCCH
Confidence 4678999999998888654
No 8
>1jmu_A Protein MU-1; protein-protein complex, jelly roll, zinc finger, viral protein; HET: BOG; 2.80A {Reovirus SP} SCOP: e.35.1.1
Probab=6.41 E-value=2.4e+02 Score=15.92 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=13.5
Q ss_pred CCCCCCeEeecCCCCCCCCC
Q 027779 197 RHIGSGLNFRTAYHNAVGAS 216 (219)
Q Consensus 197 ~~~gdG~~~~~~~~~~~~~~ 216 (219)
.-.|||-.|....+....+.
T Consensus 11 nI~GdGN~F~p~a~~~ssA~ 30 (41)
T 1jmu_A 11 NVTGDGNVFKPSAETSSTAV 30 (41)
T ss_dssp CTTSSSCEECCBGGGCCCCB
T ss_pred EEeCCCceeCcccccccccC
Confidence 34799999977665554443
No 9
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=6.36 E-value=3.4e+02 Score=13.59 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCCC
Q 027779 66 DPGRVPADYMPDV 78 (219)
Q Consensus 66 ~PG~vP~~~~~~~ 78 (219)
|||.+|..-.+..
T Consensus 2 ~PG~P~P~LPpRP 14 (26)
T 1wa7_B 2 DPGMPTPPLPPRP 14 (26)
T ss_dssp CCCCCCCCCCCCT
T ss_pred CCCCCCCCCCCCc
Confidence 6888776654443
No 10
>4ftb_A Capsid protein beta; nodavirus, beta-barrel, jelly aspartyl protease, capsid protein, hydrolase, autoproteoLys virion; HET: EPE; 2.70A {Flock house virus} PDB: 4fsj_A* 2q26_A* 2z2q_A 3lob_A 2bbv_A
Probab=6.05 E-value=3e+02 Score=22.74 Aligned_cols=12 Identities=8% Similarity=0.371 Sum_probs=8.2
Q ss_pred HHHHHhhhcCCC
Q 027779 57 FSYTVAILRDPG 68 (219)
Q Consensus 57 ~sy~~~~~t~PG 68 (219)
..|+||.+..|-
T Consensus 64 LaFLKCAFA~PD 75 (363)
T 4ftb_A 64 LAFLKCAFAPPD 75 (363)
T ss_dssp HHHHHHHHCSTT
T ss_pred hhhheecccCCC
Confidence 468899875543
Done!