Query 027779
Match_columns 219
No_of_seqs 194 out of 1264
Neff 8.0
Searched_HMMs 13730
Date Tue Mar 26 01:50:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027779.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027779hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ldda_ a.4.5.34 (A:) Anaphase 11.1 21 0.0015 21.8 -0.4 19 54-72 7-25 (74)
2 d1nova_ b.121.4.4 (A:) Alphano 7.1 1.2E+02 0.0087 22.7 2.4 18 57-74 10-34 (309)
3 d2bbva_ b.121.4.4 (A:) Alphano 7.0 1.2E+02 0.0088 22.6 2.4 18 57-74 9-33 (308)
4 g1f8v.1 b.121.4.4 (A:,D:) Alph 5.6 1.5E+02 0.011 22.7 2.4 11 57-67 51-61 (395)
5 d1dw0a_ a.3.1.1 (A:) SHP, an o 5.0 1.3E+02 0.0097 19.4 1.5 11 176-186 85-95 (112)
6 d1xrda1 f.3.1.1 (A:1-52) Light 4.5 3.1E+02 0.023 14.9 3.1 8 137-144 28-35 (52)
7 d1d5va_ a.4.5.14 (A:) Adipocyt 4.5 3.4E+02 0.025 16.5 3.3 41 174-214 46-87 (94)
8 d1kqfc_ f.21.1.1 (C:) Formate 4.3 3E+02 0.022 18.7 3.3 25 129-153 159-183 (216)
9 d2clyb1 f.53.1.1 (B:4-123) ATP 4.1 97 0.007 20.3 0.2 15 56-70 49-63 (120)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 3.9 1.3E+02 0.0097 15.1 0.6 11 12-22 24-34 (37)
No 1
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.06 E-value=21 Score=21.78 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhcCCCCCCC
Q 027779 54 MCVFSYTVAILRDPGRVPA 72 (219)
Q Consensus 54 l~~~sy~~~~~t~PG~vP~ 72 (219)
-..|||+..+.|+-|.+|.
T Consensus 7 q~~w~yI~gMLtN~~slpl 25 (74)
T d1ldda_ 7 QRSLPFIEGMLTNLGAMKL 25 (74)
T ss_dssp HHHHHHHHHHHHHHCSEEH
T ss_pred HHHHHHHHHHHhcCCCCCH
Confidence 4679999999999998664
No 2
>d1nova_ b.121.4.4 (A:) Alphanodavirus capsid protein {Nodamura virus [TaxId: 12288]}
Probab=7.06 E-value=1.2e+02 Score=22.69 Aligned_cols=18 Identities=22% Similarity=0.809 Sum_probs=11.4
Q ss_pred HHHHHhhh------cCCCC-CCCCC
Q 027779 57 FSYTVAIL------RDPGR-VPADY 74 (219)
Q Consensus 57 ~sy~~~~~------t~PG~-vP~~~ 74 (219)
.+|+||.+ ||||. +|+.+
T Consensus 10 LaFLKCAFA~PdfntDPGKGIPD~F 34 (309)
T d1nova_ 10 LDFLKCAFASPDFSTDPGKGIPDKF 34 (309)
T ss_dssp HHHHHHHHCGGGSSSCCCCCCCSSC
T ss_pred hhhheecccCCCCCCCCCCCCCccc
Confidence 46788876 56665 55554
No 3
>d2bbva_ b.121.4.4 (A:) Alphanodavirus capsid protein {Black beetle virus [TaxId: 12285]}
Probab=6.97 E-value=1.2e+02 Score=22.56 Aligned_cols=18 Identities=22% Similarity=0.805 Sum_probs=11.2
Q ss_pred HHHHHhhh------cCCCC-CCCCC
Q 027779 57 FSYTVAIL------RDPGR-VPADY 74 (219)
Q Consensus 57 ~sy~~~~~------t~PG~-vP~~~ 74 (219)
.+|+||.+ ||||. +|+.+
T Consensus 9 LaFLKCAFA~PdfntDPGKGIPD~F 33 (308)
T d2bbva_ 9 LAFLKCAFAPPDFNTDPGKGIPDRF 33 (308)
T ss_dssp HHHHHHHHCGGGSSSCCCCCCCSSC
T ss_pred hhhheecccCCCCCCCCCCCCCccc
Confidence 46788876 56664 55544
No 4
>g1f8v.1 b.121.4.4 (A:,D:) Alphanodavirus capsid protein {Pariacoto virus [TaxId: 103782]}
Probab=5.65 E-value=1.5e+02 Score=22.71 Aligned_cols=11 Identities=9% Similarity=0.413 Sum_probs=7.1
Q ss_pred HHHHHhhhcCC
Q 027779 57 FSYTVAILRDP 67 (219)
Q Consensus 57 ~sy~~~~~t~P 67 (219)
.+|+||.+..|
T Consensus 51 LaFLKCAFA~P 61 (395)
T g1f8v.1 51 LAFLKCAFAAP 61 (395)
T ss_dssp HHHHHHHHCTT
T ss_pred hhhheecccCC
Confidence 36788877444
No 5
>d1dw0a_ a.3.1.1 (A:) SHP, an oxygen binding cytochrome c {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.03 E-value=1.3e+02 Score=19.37 Aligned_cols=11 Identities=36% Similarity=0.452 Sum_probs=10.0
Q ss_pred HHHHHHHhhCC
Q 027779 176 IFENLTSVLGP 186 (219)
Q Consensus 176 ~~~N~~~v~G~ 186 (219)
+.+|+.+|+|.
T Consensus 85 F~RNC~dVlgR 95 (112)
T d1dw0a_ 85 LGRNCNSVIGR 95 (112)
T ss_dssp HHHHHHHHHSS
T ss_pred HHhhchhhhcc
Confidence 68999999997
No 6
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=4.55 E-value=3.1e+02 Score=14.91 Aligned_cols=8 Identities=25% Similarity=0.343 Sum_probs=4.9
Q ss_pred HHHHHHhc
Q 027779 137 WHIYLIFH 144 (219)
Q Consensus 137 ~h~~li~~ 144 (219)
-|+.++++
T Consensus 28 IHfiLLSt 35 (52)
T d1xrda1 28 IHFILLST 35 (52)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 37776664
No 7
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.48 E-value=3.4e+02 Score=16.45 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=27.3
Q ss_pred hhHHHHHHHhhCCCcceeeecCC-CCCCCCeEeecCCCCCCC
Q 027779 174 LGIFENLTSVLGPNIFSWVCPSS-RHIGSGLNFRTAYHNAVG 214 (219)
Q Consensus 174 ~G~~~N~~~v~G~~~~~WllP~~-~~~gdG~~~~~~~~~~~~ 214 (219)
.||...++.-+..|...=-.|-. ...|.|..|..+++.+..
T Consensus 46 ~gWkNSIRHnLSln~~F~kv~~~~~~~gkg~~W~l~p~~~~~ 87 (94)
T d1d5va_ 46 QGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNM 87 (94)
T ss_dssp TTHHHHHHHHHHHCSSEEECCCCTTSCSCCCCEEECCSCSST
T ss_pred cchHHHHHHHccccceEEEcCcCCCCCCCCceEEECccHHHH
Confidence 57877777777665443345544 445778999988776543
No 8
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=4.29 E-value=3e+02 Score=18.73 Aligned_cols=25 Identities=24% Similarity=0.281 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhccccchhhhh
Q 027779 129 VALSVLLGWHIYLIFHNKTTIEYHE 153 (219)
Q Consensus 129 l~l~~l~~~h~~li~~N~TTiE~~~ 153 (219)
..+..+.+-|+++...+..+++.+-
T Consensus 159 ~l~~~~vi~Hvy~a~~~~~~l~~M~ 183 (216)
T d1kqfc_ 159 IILIHAILIHMYMAFWVKGSIKGMI 183 (216)
T ss_dssp HHHHHHHHHHHHHHHHBTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccccchhh
Confidence 3445566679988877776666653
No 9
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.14 E-value=97 Score=20.26 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=13.0
Q ss_pred HHHHHHhhhcCCCCC
Q 027779 56 VFSYTVAILRDPGRV 70 (219)
Q Consensus 56 ~~sy~~~~~t~PG~v 70 (219)
=|.|||....+||.|
T Consensus 49 Dwa~Yk~~v~~~~~V 63 (120)
T d2clyb1 49 DWAYYKANVAKAGLV 63 (120)
T ss_dssp CHHHHHHTCSSTTHH
T ss_pred CHHHHHHhcccHHHH
Confidence 388999999999975
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.94 E-value=1.3e+02 Score=15.11 Aligned_cols=11 Identities=27% Similarity=0.507 Sum_probs=5.4
Q ss_pred hhhhhhhhhhh
Q 027779 12 SVVVLAIFYIY 22 (219)
Q Consensus 12 ~~v~~li~~~y 22 (219)
+||++++.-.|
T Consensus 24 ifvl~vLFssY 34 (37)
T d2axtl1 24 ILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35555554444
Done!