Query 027780
Match_columns 219
No_of_seqs 173 out of 909
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 15:04:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1656 Protein involved in gl 100.0 6.6E-53 1.4E-57 342.7 26.1 215 1-217 3-220 (221)
2 PTZ00446 vacuolar sorting prot 100.0 3.5E-43 7.6E-48 288.9 25.1 173 2-176 1-184 (191)
3 PTZ00464 SNF-7-like protein; P 100.0 1.5E-40 3.4E-45 278.3 25.7 190 2-199 1-199 (211)
4 KOG2910 Uncharacterized conser 100.0 1.8E-33 3.8E-38 227.1 25.1 173 2-177 1-174 (209)
5 KOG1655 Protein involved in va 100.0 3.9E-31 8.5E-36 214.3 23.3 167 2-170 1-175 (218)
6 PF03357 Snf7: Snf7; InterPro 100.0 9.3E-29 2E-33 199.9 10.0 156 17-172 1-156 (171)
7 KOG2911 Uncharacterized conser 99.9 2.8E-25 6E-30 199.1 20.8 157 13-169 229-386 (439)
8 KOG3230 Vacuolar assembly/sort 99.9 4E-21 8.8E-26 156.0 21.8 186 5-192 3-192 (224)
9 KOG3229 Vacuolar sorting prote 99.9 5E-19 1.1E-23 145.0 22.8 214 2-218 4-223 (227)
10 KOG3231 Predicted assembly/vac 99.8 8.2E-18 1.8E-22 133.7 18.7 203 4-214 2-207 (208)
11 KOG3232 Vacuolar assembly/sort 99.2 2.1E-08 4.6E-13 80.7 23.9 162 14-183 6-173 (203)
12 PF04012 PspA_IM30: PspA/IM30 98.3 0.00023 5.1E-09 60.0 19.7 148 14-166 41-202 (221)
13 KOG1655 Protein involved in va 98.3 0.00011 2.3E-09 60.7 16.3 146 21-167 16-169 (218)
14 PRK10698 phage shock protein P 98.1 0.0011 2.5E-08 56.2 20.7 143 17-166 45-201 (222)
15 KOG3230 Vacuolar assembly/sort 98.0 0.0046 1E-07 51.2 21.4 161 13-184 19-191 (224)
16 TIGR02977 phageshock_pspA phag 98.0 0.00085 1.8E-08 56.8 17.7 144 16-166 44-201 (219)
17 COG1842 PspA Phage shock prote 97.8 0.012 2.6E-07 50.2 20.8 149 15-167 43-205 (225)
18 KOG1656 Protein involved in gl 97.7 0.0063 1.4E-07 50.7 17.5 169 23-199 20-199 (221)
19 PTZ00464 SNF-7-like protein; P 97.7 0.012 2.6E-07 49.7 19.1 46 72-117 69-114 (211)
20 COG5491 VPS24 Conserved protei 97.1 0.078 1.7E-06 44.5 17.0 99 73-175 44-150 (204)
21 PF03357 Snf7: Snf7; InterPro 97.0 0.0022 4.7E-08 51.4 6.8 88 25-117 2-94 (171)
22 PTZ00446 vacuolar sorting prot 95.6 1.1 2.4E-05 37.2 17.8 149 14-174 31-187 (191)
23 COG5491 VPS24 Conserved protei 94.3 2.8 6E-05 35.3 16.5 105 56-168 38-147 (204)
24 KOG3229 Vacuolar sorting prote 94.3 2.8 6E-05 35.3 19.2 48 4-52 2-49 (227)
25 KOG3231 Predicted assembly/vac 93.8 3.1 6.7E-05 33.9 17.2 151 15-186 23-189 (208)
26 KOG2911 Uncharacterized conser 93.4 3.9 8.6E-05 38.0 14.4 32 19-50 228-259 (439)
27 PF06160 EzrA: Septation ring 90.3 18 0.00039 34.9 19.4 150 14-168 98-260 (560)
28 PRK04778 septation ring format 90.2 18 0.0004 34.8 17.8 151 14-169 102-265 (569)
29 KOG3232 Vacuolar assembly/sort 87.0 16 0.00034 30.1 18.6 115 55-185 61-180 (203)
30 PF04100 Vps53_N: Vps53-like, 86.7 26 0.00056 32.2 16.2 42 94-135 131-172 (383)
31 PF07743 HSCB_C: HSCB C-termin 82.9 13 0.00028 25.7 8.7 40 37-76 37-76 (78)
32 PF05659 RPW8: Arabidopsis bro 78.4 32 0.00069 27.3 11.4 75 40-115 71-145 (147)
33 PRK14162 heat shock protein Gr 76.2 44 0.00096 27.8 11.0 27 14-40 36-62 (194)
34 PF04065 Not3: Not1 N-terminal 74.4 35 0.00077 29.3 9.4 32 14-45 119-150 (233)
35 smart00685 DM14 Repeats in fly 73.6 21 0.00045 24.0 6.2 40 37-76 5-44 (59)
36 KOG2910 Uncharacterized conser 72.6 56 0.0012 27.3 18.7 72 54-127 41-117 (209)
37 PF11068 YlqD: YlqD protein; 71.9 42 0.00092 26.2 8.6 62 30-91 26-87 (131)
38 PF08651 DASH_Duo1: DASH compl 71.8 33 0.00071 24.3 9.0 64 69-147 3-66 (78)
39 cd07637 BAR_ACAP3 The Bin/Amph 68.6 51 0.0011 27.5 9.0 75 24-116 2-76 (200)
40 PRK09343 prefoldin subunit bet 67.6 8.5 0.00019 29.5 3.8 37 19-55 80-116 (121)
41 PRK14146 heat shock protein Gr 67.3 77 0.0017 26.8 10.5 18 19-36 56-73 (215)
42 COG5570 Uncharacterized small 66.7 23 0.00051 23.2 5.1 49 22-76 3-52 (57)
43 PRK14140 heat shock protein Gr 65.6 78 0.0017 26.3 11.0 21 18-38 38-58 (191)
44 KOG2180 Late Golgi protein sor 65.4 1.5E+02 0.0033 29.6 14.8 40 94-133 146-185 (793)
45 PRK14143 heat shock protein Gr 61.2 1.1E+02 0.0023 26.4 12.2 26 15-40 65-90 (238)
46 KOG3584 cAMP response element 60.5 35 0.00077 30.3 6.7 30 53-82 297-326 (348)
47 PF14282 FlxA: FlxA-like prote 60.1 69 0.0015 23.8 7.5 25 64-88 51-75 (106)
48 PRK14159 heat shock protein Gr 57.5 1.1E+02 0.0023 25.2 10.2 21 99-119 102-122 (176)
49 PRK14160 heat shock protein Gr 56.7 1.2E+02 0.0026 25.6 11.5 25 19-43 56-80 (211)
50 PRK03578 hscB co-chaperone Hsc 56.1 1.1E+02 0.0024 24.9 10.0 60 19-78 100-169 (176)
51 PF04108 APG17: Autophagy prot 55.9 1.7E+02 0.0037 27.1 14.8 56 111-174 113-168 (412)
52 PF10679 DUF2491: Protein of u 55.6 4.6 9.9E-05 34.2 0.4 11 1-11 1-11 (212)
53 PRK14163 heat shock protein Gr 55.6 1.3E+02 0.0028 25.5 11.1 42 82-123 95-136 (214)
54 PF01025 GrpE: GrpE; InterPro 54.8 59 0.0013 25.6 6.8 23 18-40 12-34 (165)
55 COG1730 GIM5 Predicted prefold 54.5 98 0.0021 24.6 7.8 37 14-50 91-127 (145)
56 smart00502 BBC B-Box C-termina 54.2 82 0.0018 22.9 13.7 37 15-51 19-55 (127)
57 COG0576 GrpE Molecular chapero 51.9 1.4E+02 0.003 24.8 10.5 27 66-92 82-108 (193)
58 PF10393 Matrilin_ccoil: Trime 51.9 42 0.00092 21.5 4.4 27 14-40 20-46 (47)
59 PRK01773 hscB co-chaperone Hsc 50.4 1.4E+02 0.003 24.3 10.1 46 37-82 124-169 (173)
60 PRK10869 recombination and rep 50.0 2.5E+02 0.0053 27.1 14.4 45 99-145 242-286 (553)
61 COG5124 Protein predicted to b 49.8 1.5E+02 0.0033 24.6 9.1 29 118-146 171-200 (209)
62 PRK04778 septation ring format 49.2 2.5E+02 0.0055 27.0 17.7 44 118-166 377-424 (569)
63 PRK05014 hscB co-chaperone Hsc 49.1 1.4E+02 0.0031 24.1 10.1 42 39-80 125-166 (171)
64 PRK00294 hscB co-chaperone Hsc 48.0 1.5E+02 0.0033 24.1 9.8 62 18-79 96-167 (173)
65 PRK14148 heat shock protein Gr 47.2 1.7E+02 0.0036 24.4 11.2 18 19-36 42-59 (195)
66 PF04012 PspA_IM30: PspA/IM30 47.0 1.6E+02 0.0036 24.3 15.4 8 58-65 73-80 (221)
67 PF03961 DUF342: Protein of un 46.4 1.4E+02 0.003 27.9 8.8 73 15-87 332-405 (451)
68 PF10458 Val_tRNA-synt_C: Valy 46.1 90 0.0019 21.0 6.3 23 18-40 5-27 (66)
69 PF06248 Zw10: Centromere/kine 45.9 2.9E+02 0.0062 26.7 15.4 22 13-34 10-31 (593)
70 TIGR02338 gimC_beta prefoldin, 45.7 51 0.0011 24.5 4.8 34 14-47 64-97 (110)
71 PF13758 Prefoldin_3: Prefoldi 45.5 81 0.0018 23.5 5.6 40 3-42 53-93 (99)
72 PF09726 Macoilin: Transmembra 44.9 3.4E+02 0.0073 27.2 16.9 69 62-144 543-611 (697)
73 PRK13990 cell division topolog 44.7 18 0.00038 26.5 2.0 22 1-22 1-22 (90)
74 PRK14154 heat shock protein Gr 43.8 2E+02 0.0043 24.3 11.2 20 19-38 54-73 (208)
75 TIGR00714 hscB Fe-S protein as 43.8 1.6E+02 0.0036 23.3 9.6 42 36-77 109-150 (157)
76 TIGR01144 ATP_synt_b ATP synth 43.1 1.5E+02 0.0033 22.8 15.2 14 116-129 130-143 (147)
77 PF03908 Sec20: Sec20; InterP 43.1 1.2E+02 0.0026 21.6 8.4 57 61-117 9-66 (92)
78 PRK11020 hypothetical protein; 42.2 1.5E+02 0.0034 22.6 7.9 51 31-81 5-55 (118)
79 PF11285 DUF3086: Protein of u 42.1 2.3E+02 0.0051 24.8 8.7 48 15-62 2-49 (283)
80 PF10475 DUF2450: Protein of u 42.1 2.3E+02 0.0051 24.6 17.3 73 73-145 117-190 (291)
81 PF10506 MCC-bdg_PDZ: PDZ doma 41.8 1.1E+02 0.0025 21.0 9.2 62 22-83 3-65 (67)
82 PRK14158 heat shock protein Gr 41.7 2.1E+02 0.0045 23.9 12.3 27 14-40 37-63 (194)
83 PRK14155 heat shock protein Gr 41.4 2.2E+02 0.0047 24.0 11.7 54 69-122 62-118 (208)
84 COG1382 GimC Prefoldin, chaper 40.9 1E+02 0.0022 23.7 5.8 34 14-47 67-100 (119)
85 PF09325 Vps5: Vps5 C terminal 40.6 2.1E+02 0.0045 23.6 11.6 110 13-145 20-129 (236)
86 PF08569 Mo25: Mo25-like; Int 40.1 92 0.002 28.1 6.3 48 2-51 1-52 (335)
87 PRK14149 heat shock protein Gr 40.0 2.2E+02 0.0047 23.7 9.8 10 19-28 45-54 (191)
88 PF03962 Mnd1: Mnd1 family; I 39.9 2.1E+02 0.0046 23.5 11.9 29 19-47 64-92 (188)
89 PRK06798 fliD flagellar cappin 39.4 1.7E+02 0.0038 27.4 8.2 6 110-115 430-435 (440)
90 PRK08032 fliD flagellar cappin 39.3 2.1E+02 0.0045 26.9 8.8 16 28-43 410-425 (462)
91 PRK13991 cell division topolog 39.1 22 0.00048 25.8 1.8 23 1-24 3-25 (87)
92 cd07603 BAR_ACAPs The Bin/Amph 39.0 2.3E+02 0.0049 23.6 9.0 75 24-116 2-76 (200)
93 PF04508 Pox_A_type_inc: Viral 38.4 61 0.0013 17.6 3.0 18 26-43 3-20 (23)
94 PRK12765 flagellar capping pro 38.1 2.4E+02 0.0053 27.5 9.3 28 17-44 532-559 (595)
95 KOG0994 Extracellular matrix g 37.7 5.6E+02 0.012 27.7 13.2 90 56-148 1449-1539(1758)
96 cd00632 Prefoldin_beta Prefold 37.5 1.6E+02 0.0035 21.5 10.0 89 69-168 11-99 (105)
97 PF06698 DUF1192: Protein of u 37.1 1.2E+02 0.0027 20.3 5.0 21 17-37 21-41 (59)
98 PF00804 Syntaxin: Syntaxin; 36.6 96 0.0021 21.7 5.0 48 120-169 7-54 (103)
99 PRK08032 fliD flagellar cappin 36.1 2.4E+02 0.0052 26.5 8.7 23 20-42 409-431 (462)
100 TIGR02977 phageshock_pspA phag 35.4 2.6E+02 0.0057 23.3 19.8 8 57-64 73-80 (219)
101 KOG0972 Huntingtin interacting 34.4 3.5E+02 0.0075 24.4 12.5 28 119-146 307-334 (384)
102 PRK14147 heat shock protein Gr 34.2 2.6E+02 0.0055 22.8 11.0 15 22-36 23-37 (172)
103 PF09340 NuA4: Histone acetylt 34.0 95 0.0021 22.0 4.4 30 60-89 5-34 (80)
104 KOG3192 Mitochondrial J-type c 33.8 2.6E+02 0.0056 22.7 7.2 39 33-71 121-159 (168)
105 KOG3501 Molecular chaperone Pr 33.5 1.2E+02 0.0025 22.9 4.9 31 19-49 76-106 (114)
106 TIGR02338 gimC_beta prefoldin, 33.4 2E+02 0.0043 21.3 8.9 66 94-167 37-102 (110)
107 cd00632 Prefoldin_beta Prefold 33.3 1.8E+02 0.0039 21.2 6.0 34 14-47 60-93 (105)
108 TIGR01215 minE cell division t 33.2 31 0.00067 24.6 1.7 21 1-23 3-23 (81)
109 PRK10807 paraquat-inducible pr 33.1 4.6E+02 0.0099 25.4 12.0 14 19-32 415-428 (547)
110 COG5415 Predicted integral mem 32.8 1.3E+02 0.0028 25.7 5.5 41 2-43 1-41 (251)
111 PRK14157 heat shock protein Gr 32.4 3.2E+02 0.007 23.4 8.5 6 139-144 160-165 (227)
112 PF10498 IFT57: Intra-flagella 32.2 4E+02 0.0086 24.4 11.1 12 121-132 332-343 (359)
113 PF12329 TMF_DNA_bd: TATA elem 31.9 1.8E+02 0.0038 20.2 5.7 25 16-40 11-35 (74)
114 PRK13848 conjugal transfer pro 31.5 2.1E+02 0.0046 21.1 6.3 47 120-167 10-58 (98)
115 KOG0804 Cytoplasmic Zn-finger 31.2 4.7E+02 0.01 24.9 15.0 72 20-91 328-402 (493)
116 PRK09343 prefoldin subunit bet 30.9 2E+02 0.0043 21.8 6.0 34 14-47 68-101 (121)
117 PF08946 Osmo_CC: Osmosensory 30.5 1.3E+02 0.0029 19.1 4.0 25 20-44 8-32 (46)
118 cd00187 TOP4c DNA Topoisomeras 30.2 2.8E+02 0.006 26.2 8.0 26 118-143 403-428 (445)
119 PF06305 DUF1049: Protein of u 29.9 98 0.0021 20.4 3.8 24 19-42 43-66 (68)
120 PRK13989 cell division topolog 29.8 38 0.00082 24.4 1.7 21 1-23 3-23 (84)
121 PRK05431 seryl-tRNA synthetase 29.3 4.7E+02 0.01 24.3 10.4 34 16-49 27-60 (425)
122 COG1382 GimC Prefoldin, chaper 29.1 2.3E+02 0.005 21.8 6.0 39 13-51 73-111 (119)
123 PF04102 SlyX: SlyX; InterPro 29.0 1.8E+02 0.0039 19.8 5.0 21 24-44 4-24 (69)
124 PF01920 Prefoldin_2: Prefoldi 28.6 1.7E+02 0.0036 20.9 5.1 36 14-49 59-94 (106)
125 PF02996 Prefoldin: Prefoldin 28.6 2.1E+02 0.0046 20.9 5.8 33 14-46 74-106 (120)
126 TIGR03504 FimV_Cterm FimV C-te 28.5 81 0.0018 19.7 2.9 22 45-66 4-25 (44)
127 PF02403 Seryl_tRNA_N: Seryl-t 28.1 2.4E+02 0.0051 20.5 9.5 42 13-54 25-66 (108)
128 PRK06664 fliD flagellar hook-a 27.8 4.2E+02 0.0091 26.4 9.1 6 3-8 563-568 (661)
129 TIGR00634 recN DNA repair prot 27.4 5.6E+02 0.012 24.6 16.1 43 99-145 249-291 (563)
130 PRK10698 phage shock protein P 27.2 3.8E+02 0.0082 22.6 15.3 25 19-43 54-78 (222)
131 COG1256 FlgK Flagellar hook-as 27.1 5.9E+02 0.013 24.7 11.4 48 98-146 142-189 (552)
132 TIGR03687 pupylate_cterm ubiqu 27.0 96 0.0021 18.3 2.7 17 120-136 3-19 (33)
133 cd00890 Prefoldin Prefoldin is 26.8 2.6E+02 0.0057 20.6 6.5 34 14-47 84-117 (129)
134 PRK01356 hscB co-chaperone Hsc 26.4 3.4E+02 0.0074 21.8 7.7 40 37-76 119-158 (166)
135 PF05600 DUF773: Protein of un 26.4 5.8E+02 0.013 24.4 11.6 7 3-9 83-89 (507)
136 PRK14144 heat shock protein Gr 26.4 3.9E+02 0.0084 22.4 10.4 19 19-37 47-65 (199)
137 PRK14127 cell division protein 26.3 2.1E+02 0.0046 21.6 5.3 27 110-136 16-42 (109)
138 COG1345 FliD Flagellar capping 26.3 3.9E+02 0.0084 25.5 8.3 24 21-44 426-449 (483)
139 PRK13182 racA polar chromosome 26.2 3.6E+02 0.0078 22.0 9.7 64 25-95 86-149 (175)
140 cd06571 Bac_DnaA_C C-terminal 26.2 93 0.002 22.1 3.3 33 3-36 51-86 (90)
141 PF01519 DUF16: Protein of unk 25.9 2.9E+02 0.0062 20.7 7.5 8 2-9 6-13 (102)
142 PF11471 Sugarporin_N: Maltopo 25.7 2.1E+02 0.0045 19.2 4.7 19 22-40 30-48 (60)
143 PRK14164 heat shock protein Gr 25.4 4.2E+02 0.0091 22.5 8.1 15 18-32 78-92 (218)
144 PRK13988 cell division topolog 25.1 42 0.00091 24.9 1.3 9 1-9 6-14 (97)
145 PRK14145 heat shock protein Gr 24.9 4.1E+02 0.0089 22.2 11.7 21 18-38 46-66 (196)
146 PF10115 HlyU: Transcriptional 24.8 26 0.00057 25.7 0.2 11 1-11 3-13 (91)
147 COG5509 Uncharacterized small 24.4 2.3E+02 0.005 19.2 5.1 17 28-44 29-45 (65)
148 PF10146 zf-C4H2: Zinc finger- 24.0 4.6E+02 0.0099 22.4 13.9 75 18-94 2-76 (230)
149 PF09726 Macoilin: Transmembra 23.8 7.5E+02 0.016 24.8 15.0 20 21-40 542-561 (697)
150 PF07794 DUF1633: Protein of u 23.7 6.8E+02 0.015 24.3 10.4 47 14-64 615-661 (790)
151 PF12718 Tropomyosin_1: Tropom 23.7 3.6E+02 0.0078 21.1 12.8 64 18-81 29-97 (143)
152 PF04859 DUF641: Plant protein 23.6 2.6E+02 0.0056 21.8 5.5 27 17-43 80-106 (131)
153 PRK12765 flagellar capping pro 23.4 4.7E+02 0.01 25.6 8.5 22 23-44 531-552 (595)
154 COG5453 Uncharacterized conser 23.4 28 0.00061 25.4 0.1 10 1-10 3-12 (96)
155 PF13600 DUF4140: N-terminal d 23.1 2.8E+02 0.006 20.0 5.5 30 14-43 67-96 (104)
156 TIGR00444 mazG MazG family pro 22.8 3.7E+02 0.008 23.2 6.9 58 101-166 131-189 (248)
157 KOG0994 Extracellular matrix g 22.7 1E+03 0.022 25.9 16.0 19 52-70 1537-1555(1758)
158 PF07200 Mod_r: Modifier of ru 22.5 3.6E+02 0.0079 20.7 11.7 88 45-148 33-120 (150)
159 PRK14141 heat shock protein Gr 22.2 4.8E+02 0.01 22.0 10.8 9 25-33 39-47 (209)
160 PRK07737 fliD flagellar cappin 22.1 5.1E+02 0.011 24.6 8.3 11 26-36 450-460 (501)
161 PF06103 DUF948: Bacterial pro 22.0 2.9E+02 0.0063 19.4 11.2 34 18-51 20-53 (90)
162 PF02388 FemAB: FemAB family; 21.8 6.3E+02 0.014 23.2 9.3 27 14-40 239-265 (406)
163 PF10654 DUF2481: Protein of u 21.5 1.9E+02 0.0041 22.2 4.2 44 127-173 3-47 (126)
164 PLN02943 aminoacyl-tRNA ligase 21.4 4E+02 0.0086 27.7 7.9 24 20-43 885-908 (958)
165 PF10458 Val_tRNA-synt_C: Valy 21.3 2.6E+02 0.0057 18.6 7.5 23 22-44 2-24 (66)
166 PF10212 TTKRSYEDQ: Predicted 21.1 7.6E+02 0.016 23.9 11.5 25 27-51 416-440 (518)
167 KOG2629 Peroxisomal membrane a 21.1 6E+02 0.013 22.7 10.2 31 4-36 111-141 (300)
168 PRK07857 hypothetical protein; 21.0 3.7E+02 0.008 20.2 6.2 25 13-37 24-48 (106)
169 PRK10636 putative ABC transpor 20.7 8E+02 0.017 24.0 10.3 70 20-89 559-630 (638)
170 PRK08724 fliD flagellar cappin 20.6 7.3E+02 0.016 24.8 9.1 8 81-88 652-659 (673)
171 COG1730 GIM5 Predicted prefold 20.4 1.7E+02 0.0036 23.3 3.9 41 64-104 13-53 (145)
172 PLN02943 aminoacyl-tRNA ligase 20.4 3.5E+02 0.0075 28.1 7.2 44 15-58 887-932 (958)
173 PF15070 GOLGA2L5: Putative go 20.0 8.5E+02 0.018 24.0 13.7 41 94-136 181-221 (617)
No 1
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-53 Score=342.66 Aligned_cols=215 Identities=45% Similarity=0.621 Sum_probs=195.4
Q ss_pred CcccccCCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 027780 1 MFTRLFGKPK--QETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEK-AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLG 77 (219)
Q Consensus 1 m~~~lFGk~~--~~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~-ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~ 77 (219)
||+||||+++ .++++.++|.+||++++.|.|+.++|+++|..+... |++|. .+||+.|++||||||+||+||.++.
T Consensus 3 ~~~~~FG~~k~~~~~t~~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~-tkNKR~AlqaLkrKK~~E~qL~qid 81 (221)
T KOG1656|consen 3 MFSRLFGGMKQEAKPTPQEAIQKLRETEEMLEKKQEFLEKKIEQEVENNARKYG-TKNKRMALQALKRKKRYEKQLAQID 81 (221)
T ss_pred HHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999874 457999999999999999999999999999999777 88874 6799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHH
Q 027780 78 NFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDE 157 (219)
Q Consensus 78 ~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedE 157 (219)
|.+.+|+.++..||+|.+|.+|+.+|+.|++|||.+|+.||||+|+++||+|.|+.+.++||+++||.|+|.+.++||||
T Consensus 82 G~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDE 161 (221)
T KOG1656|consen 82 GTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDE 161 (221)
T ss_pred hHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877899999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCCchHHHHHHHHHHh
Q 027780 158 LEAELEELEGAELEEQLLQPATTAPAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEM 217 (219)
Q Consensus 158 Le~EL~~L~~e~lde~~~~~~~~~p~~~~~~p~~~~~~~~~~~~~~~~ee~el~~L~~~~ 217 (219)
|.+||++|++++++.+++++.+ +|++.|+||+..+|+.|.+.+..+++|++|++|+++.
T Consensus 162 L~~ELdeLeqeeld~~ll~~~~-p~v~LP~vPs~~lPa~~~~~~~a~E~d~~l~~l~~w~ 220 (221)
T KOG1656|consen 162 LMAELDELEQEELDKELLDIRA-PPVPLPDVPSIALPAKPASRPKAEEDDDDLKELASWA 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHhccCC-CCCCCCCCCccccCcccccCCCcchhhhHHHHHHHhc
Confidence 9999999999999999999874 4555678999899987543332345566699999875
No 2
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=100.00 E-value=3.5e-43 Score=288.91 Aligned_cols=173 Identities=34% Similarity=0.438 Sum_probs=164.8
Q ss_pred cccccCCCCCCc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 027780 2 FTRLFGKPKQET-----------NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYE 70 (219)
Q Consensus 2 ~~~lFGk~~~~~-----------~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e 70 (219)
|++||||+++.| +|.++|.+||++++.|++|..+|+.+|+.+...||++++.|++++|+.||||||+||
T Consensus 1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E 80 (191)
T PTZ00446 1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYE 80 (191)
T ss_pred CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 567999987666 699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 027780 71 QQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAA 150 (219)
Q Consensus 71 ~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~ 150 (219)
+++++++++++||++++++||++++|.+||.||+.|+++||.+|+.|++|+|+++||+++|+++.++||+++|+++++
T Consensus 81 ~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~-- 158 (191)
T PTZ00446 81 QEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLL-- 158 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhcC
Q 027780 151 ADFDEDELEAELEELEGAELEEQLLQ 176 (219)
Q Consensus 151 ~~~DedELe~EL~~L~~e~lde~~~~ 176 (219)
+++||+||++||++|+++.+++.++.
T Consensus 159 ~~~DEdELe~ELe~Le~e~l~~~ll~ 184 (191)
T PTZ00446 159 NNVDDDEIDKELDLLKEQTMEEKLLK 184 (191)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999998754
No 3
>PTZ00464 SNF-7-like protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=278.27 Aligned_cols=190 Identities=26% Similarity=0.377 Sum_probs=163.1
Q ss_pred cccccCCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cHHHHHHHHHHHHHHHHH
Q 027780 2 FTRLFGKPK--QETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAK-------NKRAAIQCLKRKRLYEQQ 72 (219)
Q Consensus 2 ~~~lFGk~~--~~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~-------~k~~A~~~Lk~KK~~e~~ 72 (219)
|+||||+++ |++++..+|.+|+.++..|++||.. |+.++..||++++.+ +|++|+.|||+||+||++
T Consensus 1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~kKi~~----ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~q 76 (211)
T PTZ00464 1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVDARINK----IDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQ 76 (211)
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 689999865 4579999999999999999999854 677778888887543 489999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 027780 73 IEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAAD 152 (219)
Q Consensus 73 l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~ 152 (219)
++++.++++||+++.++|+++++|..||.||+.|+++||.+|+.|++|+|+++||+|+|+++.++||+++|+++++.+++
T Consensus 77 l~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~ 156 (211)
T PTZ00464 77 QDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDD 156 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876568
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 027780 153 FDEDELEAELEELEGAELEEQLLQPATTAPAAPVQVPAGRQQARPVP 199 (219)
Q Consensus 153 ~DedELe~EL~~L~~e~lde~~~~~~~~~p~~~~~~p~~~~~~~~~~ 199 (219)
+||+||++||++|+.+...+..++ .. ...|+||++.+|.+|..
T Consensus 157 ~DEdELe~ELe~Le~e~~~e~~~~---~l-~~~~~~p~~~~~~~~~~ 199 (211)
T PTZ00464 157 IDEDEMLGELDALDFDMEKEADAS---YL-ADALAVPGTKLPDVPTD 199 (211)
T ss_pred CCHHHHHHHHHHHHHHHhccccch---hh-hccccCCCCCCCCCCCc
Confidence 999999999999998643322111 11 11246777777776654
No 4
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=100.00 E-value=1.8e-33 Score=227.08 Aligned_cols=173 Identities=27% Similarity=0.370 Sum_probs=163.6
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 2 FTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQL 81 (219)
Q Consensus 2 ~~~lFGk~~~~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~ 81 (219)
||.+|||+..-...+++|..|+.+.+.|-+.++.+++.|+.+...||++++.|+|++|+.+||+|+++|..|.+.++++.
T Consensus 1 MG~lfsK~~~Itd~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~ 80 (209)
T KOG2910|consen 1 MGNLFSKKSRITDQDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLI 80 (209)
T ss_pred CCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999997666899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Q 027780 82 RIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAE 161 (219)
Q Consensus 82 ~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~E 161 (219)
||++++..||.+...+.|+.+|+.||.++|++|..|++|+|+++|||.+|.+++++||+++|++.+. ..|++++++|
T Consensus 81 nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls---~~dEddi~~E 157 (209)
T KOG2910|consen 81 NLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLS---AEDEDDILAE 157 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc---cccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999887 4689999999
Q ss_pred HHHHHHHHHHH-hhcCC
Q 027780 162 LEELEGAELEE-QLLQP 177 (219)
Q Consensus 162 L~~L~~e~lde-~~~~~ 177 (219)
|++|+.+...+ +++++
T Consensus 158 ldaLese~~~e~e~Pev 174 (209)
T KOG2910|consen 158 LDALESELEVEAELPEV 174 (209)
T ss_pred HHHHHHHhhhhhhcCCC
Confidence 99999887664 44443
No 5
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-31 Score=214.25 Aligned_cols=167 Identities=28% Similarity=0.405 Sum_probs=149.6
Q ss_pred cccccCCCCC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----HHHHHHHHHHHHHHHHHH
Q 027780 2 FTRLFGKPKQ---ETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKN-----KRAAIQCLKRKRLYEQQI 73 (219)
Q Consensus 2 ~~~lFGk~~~---~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~-----k~~A~~~Lk~KK~~e~~l 73 (219)
|+|+||++++ +|+...+|..+..+-+.++++|..|..++-......++. +.|. |.+|+..||+||+||+|.
T Consensus 1 MnRiFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~ 79 (218)
T KOG1655|consen 1 MNRIFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQK 79 (218)
T ss_pred CcccccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 7899997654 368899999999999999999998876665544444432 4443 789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 027780 74 EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADF 153 (219)
Q Consensus 74 ~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~ 153 (219)
++++++.+|+++..+++++.+.+..+|.||+.|++.||..++.++||+|+++.|+|.+.++.++||+++|++.++.+ ++
T Consensus 80 d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~p-ei 158 (218)
T KOG1655|consen 80 DSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTP-DI 158 (218)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886 59
Q ss_pred CHHHHHHHHHHHHHHHH
Q 027780 154 DEDELEAELEELEGAEL 170 (219)
Q Consensus 154 DedELe~EL~~L~~e~l 170 (219)
|+++|++||++|.++..
T Consensus 159 de~dL~aELdaL~~E~d 175 (218)
T KOG1655|consen 159 DEADLDAELDALGQELD 175 (218)
T ss_pred CHHHHHHHHHHHHhHhh
Confidence 99999999999976643
No 6
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.96 E-value=9.3e-29 Score=199.91 Aligned_cols=156 Identities=37% Similarity=0.478 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 17 TTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKAT 96 (219)
Q Consensus 17 ~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~a~~n 96 (219)
++|.+|+.+++.|++++..|+.+|..+..+||++++.|++..|+.|||++|.+++++.++++++.+|+++..+|+++..+
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 027780 97 TETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEE 172 (219)
Q Consensus 97 ~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~lde 172 (219)
..|+.+|+.|+++|+.+++.+++++|+++|++|++.++.+++|+++|+++++...++|++||++||++|+.+...+
T Consensus 81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~ 156 (171)
T PF03357_consen 81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEE 156 (171)
T ss_dssp HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS----------------TTSTTCHHHHHHHCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999875434688999999999998776544
No 7
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=2.8e-25 Score=199.13 Aligned_cols=157 Identities=23% Similarity=0.372 Sum_probs=150.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 13 TNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEG 92 (219)
Q Consensus 13 ~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~ 92 (219)
...+-+|..|+.++..|.++++.|+.+|+....+++.+++.|.|+.|+.+||+||++|+.++++...++||++++.+|.+
T Consensus 229 t~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~ 308 (439)
T KOG2911|consen 229 TEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDN 308 (439)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHH
Q 027780 93 AKATTETVDALRTGASTMKAMQKA-TNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAE 169 (219)
Q Consensus 93 a~~n~~v~~amk~~~~alk~~~~~-~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~ 169 (219)
|++|+.|+.||+.|+.|||.++.. ...|+|+++||++.+.++.++||+++|+.+...+.+++|++||.||+.|+.+.
T Consensus 309 s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~~D~ 386 (439)
T KOG2911|consen 309 SQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLEADE 386 (439)
T ss_pred hcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHHhcc
Confidence 999999999999999999999994 58999999999999999999999999999876667899999999999998664
No 8
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4e-21 Score=156.04 Aligned_cols=186 Identities=23% Similarity=0.307 Sum_probs=152.4
Q ss_pred ccCCCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 5 LFGKPKQE-TNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRI 83 (219)
Q Consensus 5 lFGk~~~~-~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~l 83 (219)
+||+++++ +-.+..-.-|...++.|++....|+.+-......+|+..++|+-..++...|.-.+..+++.+++++..+|
T Consensus 3 lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqi 82 (224)
T KOG3230|consen 3 LFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQI 82 (224)
T ss_pred cccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987654 45555666677777778888888876666677888999999986665555555555556677799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Q 027780 84 HDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELE 163 (219)
Q Consensus 84 e~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~ 163 (219)
..+...|++.+++..+..+|+.++++|..||++||+..+.++|.+|+.+.+.++...++|+..++. .++++|-|+|.+
T Consensus 83 qaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDd--al~~~edEEEtd 160 (224)
T KOG3230|consen 83 QAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDD--ALGDDEDEEETD 160 (224)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988763 466677789999
Q ss_pred HHHHHHHHHhhcCCC---CCCCCCCCCCCCCC
Q 027780 164 ELEGAELEEQLLQPA---TTAPAAPVQVPAGR 192 (219)
Q Consensus 164 ~L~~e~lde~~~~~~---~~~p~~~~~~p~~~ 192 (219)
+|.+++|||.-.++. ..+|+...++|.+.
T Consensus 161 ~lvnqVLDEiGvdl~~qL~~~P~~~~~~~~a~ 192 (224)
T KOG3230|consen 161 DLVNQVLDEIGVDLASQLSSLPSAAGSLPIAK 192 (224)
T ss_pred HHHHHHHHHHcccHHHHhccCcccccccchhh
Confidence 999999999655554 35666656666543
No 9
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5e-19 Score=144.99 Aligned_cols=214 Identities=19% Similarity=0.239 Sum_probs=162.7
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 2 FTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQL 81 (219)
Q Consensus 2 ~~~lFGk~~~~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~ 81 (219)
|+++||+ +|+...++|-.++|....+|++++.+|++.-..-...+|++.+.|+++.|+.+.|.--...+...+++.+..
T Consensus 4 ~~~~~~p-dPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKA 82 (227)
T KOG3229|consen 4 FGKTPGP-DPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKA 82 (227)
T ss_pred cccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4444443 445688899999999999999999998766656666678888888888888887777777788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Q 027780 82 RIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAE 161 (219)
Q Consensus 82 ~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~E 161 (219)
+|.++.+++..+-....+++.|..++++|+.+|.-+.++.+..+|.+|..++.++.-|.+++...+.+ ..|.+|+++|
T Consensus 83 qlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~es--v~d~eemeEe 160 (227)
T KOG3229|consen 83 QLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMES--VEDSEEMEEE 160 (227)
T ss_pred HHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998765 3455556666
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCC----CCCCCCCCCCC--CCcCCCchHHHHHHHHHHhc
Q 027780 162 LEELEGAELEEQLLQPATTAPAAPVQ----VPAGRQQARPV--PQKQRTAEEDELAALQAEMA 218 (219)
Q Consensus 162 L~~L~~e~lde~~~~~~~~~p~~~~~----~p~~~~~~~~~--~~~~~~~ee~el~~L~~~~~ 218 (219)
.++-.+.+|-+.-....+.+|.++.. +|....++... .....++++++|.+++.+||
T Consensus 161 ~deEVdkIL~~it~~~~~~~p~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa 223 (227)
T KOG3229|consen 161 ADEEVDKILTEITGEKAGEAPLAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLA 223 (227)
T ss_pred HHHHHHHHHHHHhccccccCCcchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHH
Confidence 55544444444333333344554432 23322221110 11134577899999999986
No 10
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=8.2e-18 Score=133.71 Aligned_cols=203 Identities=19% Similarity=0.191 Sum_probs=158.7
Q ss_pred cccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 4 RLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRI 83 (219)
Q Consensus 4 ~lFGk~~~~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~l 83 (219)
++|||+.+..-.+..-..||.+-+.+++....++++-.+....+|+..+.||++.|+.+.|+-..+.+|..+.++....+
T Consensus 2 niF~Kktvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki 81 (208)
T KOG3231|consen 2 NIFKKKTVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKI 81 (208)
T ss_pred CcccCCCHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 68998865555555566777777777777777766666666677898999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Q 027780 84 HDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELE 163 (219)
Q Consensus 84 e~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~ 163 (219)
.++..+...+.++..+.+||.+.+++|+.+|+.|+++++-.+|.+|+....+++...++|.+.++. -+|...-++|-+
T Consensus 82 ~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDd--ild~sgDeeEs~ 159 (208)
T KOG3231|consen 82 TSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDD--ILDGSGDEEESQ 159 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHH--HhcCCCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999888888887776643 234444467799
Q ss_pred HHHHHHHHHhhcCCCC---CCCCCCCCCCCCCCCCCCCCCcCCCchHHHHHHHH
Q 027780 164 ELEGAELEEQLLQPAT---TAPAAPVQVPAGRQQARPVPQKQRTAEEDELAALQ 214 (219)
Q Consensus 164 ~L~~e~lde~~~~~~~---~~p~~~~~~p~~~~~~~~~~~~~~~~ee~el~~L~ 214 (219)
++.+++||+.-.++.+ ++|++. +.|.. .+ +++...|.+++|.+|+
T Consensus 160 aiVNqVLDEIGIEisgKma~~P~a~-s~~~~--st---~kat~~Die~QLa~Lr 207 (208)
T KOG3231|consen 160 AIVNQVLDEIGIEISGKMAKAPSAR-SLPSA--ST---SKATISDIERQLAALR 207 (208)
T ss_pred HHHHHHHHHhhhhhcchhccCCccC-CCCcc--cc---CCCcHHHHHHHHHHhc
Confidence 9999999996554433 334322 12211 11 1122457888998885
No 11
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.1e-08 Score=80.75 Aligned_cols=162 Identities=16% Similarity=0.189 Sum_probs=122.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQC----LKRKRLYEQQIEQLGNFQLRIHDQMIM 89 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~----Lk~KK~~e~~l~~~~~~~~~le~~~~~ 89 (219)
.....+-.|+-+...|++.-...++.-..+..++|+.+..||.+.|+.| .|+|-..- ++......|..+...
T Consensus 6 ~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~----n~LrlssRvDAVaaR 81 (203)
T KOG3232|consen 6 KLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAV----NYLRLSSRVDAVAAR 81 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4556788899999999988888877777788899999999998877654 55543332 344556688889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CCCHHHHHHHHHHHHH
Q 027780 90 LEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAA--DFDEDELEAELEELEG 167 (219)
Q Consensus 90 ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~--~~DedELe~EL~~L~~ 167 (219)
+++|-+...|-..|....+.|-...+.||+++|..+||.|..+-+..+--...+...+++.. ..+.++ .+.|.+
T Consensus 82 vqTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~----Vd~Lmq 157 (203)
T KOG3232|consen 82 VQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGD----VDSLMQ 157 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhH----HHHHHH
Confidence 99999999999999999999999999999999999999999999887765555544433221 233333 677888
Q ss_pred HHHHHhhcCCCCCCCC
Q 027780 168 AELEEQLLQPATTAPA 183 (219)
Q Consensus 168 e~lde~~~~~~~~~p~ 183 (219)
++.|+--++....+|.
T Consensus 158 ~vADeaGlElnq~lp~ 173 (203)
T KOG3232|consen 158 QVADEAGLELNQELPQ 173 (203)
T ss_pred HHHHHhchhhhhcCCC
Confidence 8888755555433343
No 12
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=98.29 E-value=0.00023 Score=59.96 Aligned_cols=148 Identities=25% Similarity=0.251 Sum_probs=108.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHD-------- 85 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~-------- 85 (219)
.+..++.........+++++..++..+..-..+|..++..|+-+.|+.+|.++..++.++..+..++..+..
T Consensus 41 ~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~ 120 (221)
T PF04012_consen 41 KARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQ 120 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777788888999999999999999999999999999999999999998888876665554444
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 027780 86 ---QMIMLEGAKATTETVDALRTGASTMKAMQK---ATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELE 159 (219)
Q Consensus 86 ---~~~~ie~a~~n~~v~~amk~~~~alk~~~~---~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe 159 (219)
+-..|...+....++.+-..++++-+.++. .++++.....++.|.+.++..+--.++.....+ +...++
T Consensus 121 l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~~-----~~~~~e 195 (221)
T PF04012_consen 121 LEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAELAD-----SDQDLE 195 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHhcc-----CcccHH
Confidence 333456667777778887778888887776 356677777777777777666666666655321 122367
Q ss_pred HHHHHHH
Q 027780 160 AELEELE 166 (219)
Q Consensus 160 ~EL~~L~ 166 (219)
.+|+++.
T Consensus 196 ~~l~~~~ 202 (221)
T PF04012_consen 196 AELEELE 202 (221)
T ss_pred HHHHHhc
Confidence 7776664
No 13
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00011 Score=60.68 Aligned_cols=146 Identities=18% Similarity=0.237 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 21 KLNETLEMLEKKEKVLLKKASVEVEKAKDY---SKAKNKRAAIQCLKRKR-LYEQQIEQLGNFQLRIHDQMIMLEGAKAT 96 (219)
Q Consensus 21 ~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~---~~~~~k~~A~~~Lk~KK-~~e~~l~~~~~~~~~le~~~~~ie~a~~n 96 (219)
.|...+..+++|-..++++|........+| +++-+-.-|+..||+|- +.-+|.-.+.++..+|.++.|.++.|...
T Consensus 16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t 95 (218)
T KOG1655|consen 16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFT 95 (218)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 477889999999999999998766655544 45445567999999986 34567778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Q 027780 97 TETVDALRTGASTMKAMQKATN----IDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEG 167 (219)
Q Consensus 97 ~~v~~amk~~~~alk~~~~~~~----id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~ 167 (219)
.+-+.--..+..|||.-++.|. -=+|+++ ++++++++..=+.++=|...++-.-+.-+.+..+.+.+|.+
T Consensus 96 ~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~I-edlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELda 169 (218)
T KOG1655|consen 96 AESLKDTQATVAAMKDTNKEMKKQYKKVNIDKI-EDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAELDA 169 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHH
Confidence 8888877777788888887653 4456654 67787777777777777777876445556554444455553
No 14
>PRK10698 phage shock protein PspA; Provisional
Probab=98.14 E-value=0.0011 Score=56.24 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Q 027780 17 TTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIH-----------D 85 (219)
Q Consensus 17 ~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le-----------~ 85 (219)
.++.+.......+++++..++..+..-..+|+..+..|+-+.|+.+|.+|+.|..++..+..++.... .
T Consensus 45 ~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~ 124 (222)
T PRK10698 45 STSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGE 124 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566788888888888888889999999999999999999999988887766555544433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Q 027780 86 QMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDE---INEQTENMKQIQEALSTPIGAAADFDEDELEAEL 162 (219)
Q Consensus 86 ~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde---~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL 162 (219)
+-..|+.+.+-..++-+=..++.+.++++..+.--++...+.- |.+-++..+--.+++.. + ..+.|+.|+
T Consensus 125 L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~~~--~-----~~~~l~~e~ 197 (222)
T PRK10698 125 LENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHGF--G-----KQKSLDQQF 197 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHhhc--c-----CCCCHHHHH
Confidence 4445777788888888888899999998876543334444444 44444444433344321 1 113466667
Q ss_pred HHHH
Q 027780 163 EELE 166 (219)
Q Consensus 163 ~~L~ 166 (219)
+.|+
T Consensus 198 ~~le 201 (222)
T PRK10698 198 AELK 201 (222)
T ss_pred HHhh
Confidence 6664
No 15
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0046 Score=51.15 Aligned_cols=161 Identities=22% Similarity=0.236 Sum_probs=105.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 027780 13 TNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQI---EQLGNFQLRIHDQMIM 89 (219)
Q Consensus 13 ~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l---~~~~~~~~~le~~~~~ 89 (219)
.....++..|......|+-+.+.|...| ...||..--..-|..|+.++|.|.+..+.. .++.+....++++..+
T Consensus 19 Ral~~a~ReleRer~~le~qeKklvaeI---Kk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss 95 (224)
T KOG3230|consen 19 RALNKATRELERERQKLELQEKKLVAEI---KKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSS 95 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455667777777777777765554333 345777765667899999999998777654 4788888889998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hcc-CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q 027780 90 LEGAKATTETVDALRTGASTMKAM--QKA-TNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELE 166 (219)
Q Consensus 90 ie~a~~n~~v~~amk~~~~alk~~--~~~-~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~ 166 (219)
-.-++.-.-+-.||..-|..|.-- .+- +..++-.++||--.|. ++++|...++. +.||+|-++=.++..
T Consensus 96 ~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Em------m~daIDdal~~--~edEEEtd~lvnqVL 167 (224)
T KOG3230|consen 96 TSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEM------MDDAIDDALGD--DEDEEETDDLVNQVL 167 (224)
T ss_pred HHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhcc--cchhHHHHHHHHHHH
Confidence 888888899999998887765432 222 2456666666544433 55566655553 456666665556555
Q ss_pred HH---HHHHhhcCCC---CCCCCC
Q 027780 167 GA---ELEEQLLQPA---TTAPAA 184 (219)
Q Consensus 167 ~e---~lde~~~~~~---~~~p~~ 184 (219)
.| .+.+++.+.+ .++|.+
T Consensus 168 DEiGvdl~~qL~~~P~~~~~~~~a 191 (224)
T KOG3230|consen 168 DEIGVDLASQLSSLPSAAGSLPIA 191 (224)
T ss_pred HHHcccHHHHhccCcccccccchh
Confidence 54 3555554443 344554
No 16
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=98.02 E-value=0.00085 Score=56.80 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 027780 16 LTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMI------- 88 (219)
Q Consensus 16 ~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~------- 88 (219)
..++.........+++++..+...+..-..+|+..+..|+-+.|+.+|.+|+.++.+...+..+...+...+.
T Consensus 44 r~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~ 123 (219)
T TIGR02977 44 RTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIA 123 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556667788888888888888899999999999999999999999999888766665555444333
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Q 027780 89 ----MLEGAKATTETVDALRTGASTMKAMQKAT---NIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAE 161 (219)
Q Consensus 89 ----~ie~a~~n~~v~~amk~~~~alk~~~~~~---~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~E 161 (219)
.|+.++....++.+=..++.+.+.++..+ +.+.--..++.|.+-++..+--.++.. .. +.+.|+.+
T Consensus 124 ~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~--~~-----~~~~l~~~ 196 (219)
T TIGR02977 124 KLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYD--LG-----RKPSLEDE 196 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhh--cc-----CCCCHHHH
Confidence 34445555555555555667766666543 444444444444444333332333332 11 12457777
Q ss_pred HHHHH
Q 027780 162 LEELE 166 (219)
Q Consensus 162 L~~L~ 166 (219)
|+.|+
T Consensus 197 l~~l~ 201 (219)
T TIGR02977 197 FAELE 201 (219)
T ss_pred HHHhc
Confidence 77764
No 17
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=97.80 E-value=0.012 Score=50.22 Aligned_cols=149 Identities=19% Similarity=0.188 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 027780 15 ALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQM------- 87 (219)
Q Consensus 15 ~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~------- 87 (219)
+..++..+...-..++++...+...+.....+|+..+..|+-..|+.+|-++..|++++..+...+..+....
T Consensus 43 ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~ 122 (225)
T COG1842 43 ARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQL 122 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666777777777777888888889999999999999999999999998876665555444333
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Q 027780 88 ----IMLEGAKATTETVDALRTGASTMKAMQK---ATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEA 160 (219)
Q Consensus 88 ----~~ie~a~~n~~v~~amk~~~~alk~~~~---~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~ 160 (219)
..|....+-..++.+=..+.+|-..+++ .++.+.--..++.|.+-++....-.++.+.-. ....++++.
T Consensus 123 ~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~el~----~~~~~dl~~ 198 (225)
T COG1842 123 AALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAAELA----EGSGDDLDK 198 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhh----ccCcccHHH
Confidence 3455566667777777777777777765 44554555555555555555555555554310 012356777
Q ss_pred HHHHHHH
Q 027780 161 ELEELEG 167 (219)
Q Consensus 161 EL~~L~~ 167 (219)
||+++..
T Consensus 199 e~a~~~~ 205 (225)
T COG1842 199 EFAQAGA 205 (225)
T ss_pred HHHHhcc
Confidence 7777654
No 18
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0063 Score=50.67 Aligned_cols=169 Identities=22% Similarity=0.261 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 23 NETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKR-KRLY---EQQIEQLGNFQLRIHDQMIMLEGAKATTE 98 (219)
Q Consensus 23 r~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~-KK~~---e~~l~~~~~~~~~le~~~~~ie~a~~n~~ 98 (219)
.++|..|..-+.-|+++-+-...++-.-+.. .|+.+..+ |++. -+..-++..++.+|+.++.+|+......+
T Consensus 20 ~eaI~kLrEteemL~KKqe~Le~ki~~e~e~----~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alE 95 (221)
T KOG1656|consen 20 QEAIQKLRETEEMLEKKQEFLEKKIEQEVEN----NARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 95 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4567777777777777666655555444322 23332222 2211 22233567777788888777776655444
Q ss_pred HHHHHHHHHHHHHHHhc---cC----CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 027780 99 TVDALRTGASTMKAMQK---AT----NIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELE 171 (219)
Q Consensus 99 v~~amk~~~~alk~~~~---~~----~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~ld 171 (219)
-+ +.-+.+|..|.. .| +-=+||++ |++-+.+..+.+|.+=|+..++.+-++..+=-++||..-..+--+
T Consensus 96 nA---~~n~Evl~~m~~~A~AmK~~h~~mDiDkV-dd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeq 171 (221)
T KOG1656|consen 96 NA---NTNTEVLDAMGSAAKAMKAAHKNMDIDKV-DDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQ 171 (221)
T ss_pred cc---cccHHHHHHHHHHHHHHHHHHhccChhHH-HHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHH
Confidence 33 344444444432 22 22344443 566677777888888889888876556555557777654433333
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 027780 172 EQLLQPATTAPAAPVQVPAGRQQARPVP 199 (219)
Q Consensus 172 e~~~~~~~~~p~~~~~~p~~~~~~~~~~ 199 (219)
+.+..-...++.|||.+|+++....|..
T Consensus 172 eeld~~ll~~~~p~v~LP~vPs~~lPa~ 199 (221)
T KOG1656|consen 172 EELDKELLDIRAPPVPLPDVPSIALPAK 199 (221)
T ss_pred HHHHHHHhccCCCCCCCCCCCccccCcc
Confidence 4555555567777777775444344443
No 19
>PTZ00464 SNF-7-like protein; Provisional
Probab=97.69 E-value=0.012 Score=49.71 Aligned_cols=46 Identities=24% Similarity=0.194 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 027780 72 QIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKAT 117 (219)
Q Consensus 72 ~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~ 117 (219)
..-.+.+++.++..++++++......+....=...-.+|+.-++.|
T Consensus 69 ~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaL 114 (211)
T PTZ00464 69 QKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTL 114 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666555555555555555555443
No 20
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=97.12 E-value=0.078 Score=44.51 Aligned_cols=99 Identities=19% Similarity=0.176 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHH-------HHhc
Q 027780 73 IEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATN-IDDVDKTMDEINEQTENMKQIQ-------EALS 144 (219)
Q Consensus 73 l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~-id~Ve~~mde~~e~~e~~~eI~-------e~l~ 144 (219)
+-++.++.+.|...+..+.+..+....--+|...+.-|......|+ +..|..+++.|.-+....+... +.+.
T Consensus 44 ~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~ 123 (204)
T COG5491 44 LYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMD 123 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555555555555555554445555555555666666666 7777777777766665444444 3333
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 027780 145 TPIGAAADFDEDELEAELEELEGAELEEQLL 175 (219)
Q Consensus 145 ~~~~~~~~~DedELe~EL~~L~~e~lde~~~ 175 (219)
.+.+ .+..+..++++++.+..+++.-+
T Consensus 124 v~~~----~~v~~~l~~lde~v~~v~pEi~l 150 (204)
T COG5491 124 VVVG----DPVLEDLEELDELVNKVLPEIGL 150 (204)
T ss_pred cCcc----chhhhhHHHHHHHHHhhchhhhh
Confidence 2221 23455566677766666666433
No 21
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=97.03 E-value=0.0022 Score=51.38 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 25 TLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRK-----RLYEQQIEQLGNFQLRIHDQMIMLEGAKATTET 99 (219)
Q Consensus 25 ~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~K-----K~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v 99 (219)
.+..|...+..|++++..+..+++++ ...|+.+++.. +.|=+.+-++..++.++.....+++......+.
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~-----~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~ 76 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKL-----EKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIET 76 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-----HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666665555443 23444444432 244445556666667777777777777777777
Q ss_pred HHHHHHHHHHHHHHhccC
Q 027780 100 VDALRTGASTMKAMQKAT 117 (219)
Q Consensus 100 ~~amk~~~~alk~~~~~~ 117 (219)
.........+|+..++.|
T Consensus 77 a~~~~~v~~al~~~~~~L 94 (171)
T PF03357_consen 77 AQSNQQVVKALKQSSKAL 94 (171)
T ss_dssp HHHHHHHSSS----SHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 766666666666665543
No 22
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=95.59 E-value=1.1 Score=37.24 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEV-----EKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMI 88 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~-----~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~ 88 (219)
..+.++..|......|+++|.........+. ..|+.+++.+ +.+=+..-.+..++..+..++++|+....
T Consensus 31 ~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrK-----K~~E~ql~q~~~ql~nLEq~~~~iE~a~~ 105 (191)
T PTZ00446 31 KNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRK-----KLYEQEIENILNNRLTLEDNMINLENMHL 105 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888877655443222 2344444332 23444555666777888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCCCCCCCHHHHHHHH--HHH
Q 027780 89 MLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQT-ENMKQIQEALSTPIGAAADFDEDELEAEL--EEL 165 (219)
Q Consensus 89 ~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~-e~~~eI~e~l~~~~~~~~~~DedELe~EL--~~L 165 (219)
+.+....-..-..||+...+-|. +. ++|++-+-+.|..+.. +.++-++.-+...++. +++ +.||+ +| ++|
T Consensus 106 ~~ev~~aLk~g~~aLK~~~k~~~-id---kVd~lmDei~E~~e~~~EIseaLs~~~~~~~DE-dEL-e~ELe-~Le~e~l 178 (191)
T PTZ00446 106 HKIAVNALSYAANTHKKLNNEIN-TQ---KVEKIIDTIQENKDIQEEINQALSFNLLNNVDD-DEI-DKELD-LLKEQTM 178 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-HH---HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCH-HHH-HHHHH-HHHHHHH
Confidence 88877777777888888776663 22 3444444333333333 3344455443334442 222 33433 23 455
Q ss_pred HHHHHHHhh
Q 027780 166 EGAELEEQL 174 (219)
Q Consensus 166 ~~e~lde~~ 174 (219)
+...+.+-+
T Consensus 179 ~~~ll~~~~ 187 (191)
T PTZ00446 179 EEKLLKELI 187 (191)
T ss_pred HHHHHHHHh
Confidence 555555533
No 23
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=94.34 E-value=2.8 Score=35.29 Aligned_cols=105 Identities=14% Similarity=0.175 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----HHHHHHHHHHHHH
Q 027780 56 KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATN----IDDVDKTMDEINE 131 (219)
Q Consensus 56 k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~----id~Ve~~mde~~e 131 (219)
+..+..++|-+ ++..+++.....|++....+........+.+-|..++..|..+..-.. ++.+...|+-.+-
T Consensus 38 ~~l~~~~~~~~----~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~ 113 (204)
T COG5491 38 RRLAEELYKLR----KARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQL 113 (204)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544 445567788888888888888888888888888888888885554333 3444444444444
Q ss_pred HHHHHHHHHHHhcC-CCCCCCCCCHHHHHHHHHHHHHH
Q 027780 132 QTENMKQIQEALST-PIGAAADFDEDELEAELEELEGA 168 (219)
Q Consensus 132 ~~e~~~eI~e~l~~-~~~~~~~~DedELe~EL~~L~~e 168 (219)
-.+.+.+..+.... +.. .+.+++++++..+.-+
T Consensus 114 ~le~m~e~~~v~~~~~v~----~~l~~lde~v~~v~pE 147 (204)
T COG5491 114 RLETMDELMDVVVGDPVL----EDLEELDELVNKVLPE 147 (204)
T ss_pred HHHHHHHHhccCccchhh----hhHHHHHHHHHhhchh
Confidence 44577676665554 442 4667888888877655
No 24
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=2.8 Score=35.29 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=30.2
Q ss_pred cccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 4 RLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSK 52 (219)
Q Consensus 4 ~lFGk~~~~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~ 52 (219)
.+||+. +.|+|.+...+.+..++.=-+.++..-..|..+..++++.++
T Consensus 2 ~l~~~~-~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK 49 (227)
T KOG3229|consen 2 GLFGKT-PGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIK 49 (227)
T ss_pred CccccC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467664 346677777777777766666666666666666666666553
No 25
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=3.1 Score=33.89 Aligned_cols=151 Identities=19% Similarity=0.231 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHH---HHH--HHHHH-HHHHHH
Q 027780 15 ALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIE---QLG--NFQLR-IHDQMI 88 (219)
Q Consensus 15 ~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~---~~~--~~~~~-le~~~~ 88 (219)
+.+.|.+-|. .++++...|+-.|... |........+..|++++.-||.--+.+. ++. +.+.. +..++-
T Consensus 23 t~RdierdRr---~me~~Ek~LElEIkk~---Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~k 96 (208)
T KOG3231|consen 23 TQRDIERDRR---AMEKQEKQLELEIKKM---AAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMK 96 (208)
T ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHH---HHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 3444555544 4567766666555432 3444456677888888777765544433 222 22222 222222
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCCHHHHHHH
Q 027780 89 MLEGAKATTETVDALRT------GASTMKAMQKATNIDDVDKTMDEINEQTENMKQ-IQEALSTPIGAAADFDEDELEAE 161 (219)
Q Consensus 89 ~ie~a~~n~~v~~amk~------~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~e-I~e~l~~~~~~~~~~DedELe~E 161 (219)
--..+.++..++.+|.. ....|+.... . +.-++.++| |++.|.+-++++ -|++|-.+=
T Consensus 97 m~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~-------a------nmKMemTeEMiNDTLDdild~s--gDeeEs~ai 161 (208)
T KOG3231|consen 97 MAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQK-------A------NMKMEMTEEMINDTLDDILDGS--GDEEESQAI 161 (208)
T ss_pred HHHHhchHHHHHHHHHccCCHHHHHHHHHHHHH-------H------HHHhhhHHHHHHhhHHHHhcCC--CcHHHHHHH
Confidence 23334444444544432 2222333221 1 111222222 566665555542 345554444
Q ss_pred HHHHHHH---HHHHhhcCCCCCCCCCCC
Q 027780 162 LEELEGA---ELEEQLLQPATTAPAAPV 186 (219)
Q Consensus 162 L~~L~~e---~lde~~~~~~~~~p~~~~ 186 (219)
.++...+ ++..+|...++..|.+..
T Consensus 162 VNqVLDEIGIEisgKma~~P~a~s~~~~ 189 (208)
T KOG3231|consen 162 VNQVLDEIGIEISGKMAKAPSARSLPSA 189 (208)
T ss_pred HHHHHHHhhhhhcchhccCCccCCCCcc
Confidence 4444443 345567666655555533
No 26
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.39 E-value=3.9 Score=37.95 Aligned_cols=32 Identities=9% Similarity=0.142 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 19 LDKLNETLEMLEKKEKVLLKKASVEVEKAKDY 50 (219)
Q Consensus 19 i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~ 50 (219)
|..+...+..|.+-+..|.++|+...++++++
T Consensus 228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~ 259 (439)
T KOG2911|consen 228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKS 259 (439)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555443
No 27
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.26 E-value=18 Score=34.86 Aligned_cols=150 Identities=18% Similarity=0.251 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKD------YSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQM 87 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~------~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~ 87 (219)
.+...+..+++.+..++.++..+...++.....-.+ .++..-+..=+.+|..+-.|-..+..+...+.+++...
T Consensus 98 ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F 177 (560)
T PF06160_consen 98 KAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEF 177 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHH
Confidence 345556666666666666666665555443322111 12222333444556666666666666666666666666
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCCHHHHHH
Q 027780 88 IMLEGAKAT------TETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQ-IQEALSTPIGAAADFDEDELEA 160 (219)
Q Consensus 88 ~~ie~a~~n------~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~e-I~e~l~~~~~~~~~~DedELe~ 160 (219)
...+....+ .+++..++.....|..+...+ +.=+..+-.++-++.+.... +.+|..+++. ++..+++.
T Consensus 178 ~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~I-P~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~----l~~~~i~~ 252 (560)
T PF06160_consen 178 SEFEELTENGDYLEAREILEKLKEETDELEEIMEDI-PKLYKELQKEFPDQLEELKEGYREMEEEGYY----LEHLDIEE 252 (560)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHhHHHHHHHHHHHHHHHHCCCC----CCCCCHHH
Confidence 665555554 355666666666666654443 23344444455555544444 6667777664 44556777
Q ss_pred HHHHHHHH
Q 027780 161 ELEELEGA 168 (219)
Q Consensus 161 EL~~L~~e 168 (219)
+++.+...
T Consensus 253 ~i~~i~~~ 260 (560)
T PF06160_consen 253 EIEQIEEQ 260 (560)
T ss_pred HHHHHHHH
Confidence 77777643
No 28
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.18 E-value=18 Score=34.82 Aligned_cols=151 Identities=13% Similarity=0.236 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAK------DYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQM 87 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak------~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~ 87 (219)
.+...|..+++.++.++.++..+...++.....-. ..++..-+..=+.+|-.+-.|-..+..+...+.+++...
T Consensus 102 ~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f 181 (569)
T PRK04778 102 KAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEF 181 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH
Confidence 34556777777777777777666555544332211 112222333344445455445455555666666666555
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCCHHHHHH
Q 027780 88 IMLEGAKAT------TETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQ-IQEALSTPIGAAADFDEDELEA 160 (219)
Q Consensus 88 ~~ie~a~~n------~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~e-I~e~l~~~~~~~~~~DedELe~ 160 (219)
.+.+....+ .+++..++.....|..+...+ ++=+.++-..+=++.+.... ..+|..+++. ++..+++.
T Consensus 182 ~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~i-P~l~~~~~~~~P~ql~el~~gy~~m~~~gy~----~~~~~i~~ 256 (569)
T PRK04778 182 SQFVELTESGDYVEAREILDQLEEELAALEQIMEEI-PELLKELQTELPDQLQELKAGYRELVEEGYH----LDHLDIEK 256 (569)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC----CCCCChHH
Confidence 555554443 234444555555555443332 12222222233233322222 5566667664 55567778
Q ss_pred HHHHHHHHH
Q 027780 161 ELEELEGAE 169 (219)
Q Consensus 161 EL~~L~~e~ 169 (219)
++..|..+.
T Consensus 257 ~i~~l~~~i 265 (569)
T PRK04778 257 EIQDLKEQI 265 (569)
T ss_pred HHHHHHHHH
Confidence 888776553
No 29
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.98 E-value=16 Score=30.08 Aligned_cols=115 Identities=23% Similarity=0.380 Sum_probs=71.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cC--CHHHHHHHHHHHHH
Q 027780 55 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQK-AT--NIDDVDKTMDEINE 131 (219)
Q Consensus 55 ~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~-~~--~id~Ve~~mde~~e 131 (219)
.|..|.++||--- +++..-..|++....-.-..+-..|+.+|..+ |+.+|= .| -.|+.+.-.+++.-
T Consensus 61 kkne~~n~Lrlss-------RvDAVaaRvqTavtmr~Vt~sM~gVvK~md~a---lktmNLekis~~MDkFE~qFedldv 130 (203)
T KOG3232|consen 61 KKNEAVNYLRLSS-------RVDAVAARVQTAVTMRKVTKSMAGVVKSMDSA---LKTMNLEKISQLMDKFEKQFEDLDV 130 (203)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHhhhhhh
Confidence 5678888887543 45555556655555444455556667777655 666653 22 36788888888777
Q ss_pred HHHHHHHHHHHhcC--CCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 027780 132 QTENMKQIQEALST--PIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAP 185 (219)
Q Consensus 132 ~~e~~~eI~e~l~~--~~~~~~~~DedELe~EL~~L~~e~lde~~~~~~~~~p~~~ 185 (219)
+... +.+++++ .+..+ .-|-|.|..+...-..-+|...++... +|+.|
T Consensus 131 qt~~---me~~m~~st~l~tp-q~~Vd~Lmq~vADeaGlElnq~lp~~~--~~a~~ 180 (203)
T KOG3232|consen 131 QTEV---MEKAMSGSTALSTP-QGDVDSLMQQVADEAGLELNQELPQNV--VPAIS 180 (203)
T ss_pred HHHH---HHHhccCcccccCC-hhHHHHHHHHHHHHhchhhhhcCCCCC--CCCcC
Confidence 6544 4556654 23333 446688999987766667777776654 45543
No 30
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=86.69 E-value=26 Score=32.22 Aligned_cols=42 Identities=10% Similarity=0.188 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 027780 94 KATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTEN 135 (219)
Q Consensus 94 ~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~ 135 (219)
+.-.+++..|......+.......+++.|..+...+......
T Consensus 131 r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~l~~~ 172 (383)
T PF04100_consen 131 RQYKEIASLLQAVKELLEHFKPYKSIPQIAELSKRIDQLQNE 172 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHH
Confidence 344577777877777776666667899998888888775533
No 31
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=82.92 E-value=13 Score=25.72 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q 027780 37 LKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQL 76 (219)
Q Consensus 37 e~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~ 76 (219)
..++..+......++..++...|..++++.+++.+-++.+
T Consensus 37 ~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~~i 76 (78)
T PF07743_consen 37 EERIKELIKELAEAFDAKDWEEAKEALRKLKYLQKLLEEI 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666677777778899999999999999998866554
No 32
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=78.42 E-value=32 Score=27.31 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027780 40 ASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQK 115 (219)
Q Consensus 40 i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~ 115 (219)
....+.++++.+.+-.+-.-.+++|+-+ |.+-+..++..+...-++-.++.......++..-|..-+.-|+.+..
T Consensus 71 L~~~L~~g~~LV~k~sk~~r~n~~kk~~-y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~~~~~e~~~kl~~i~~ 145 (147)
T PF05659_consen 71 LKELLEKGKELVEKCSKVRRWNLYKKPR-YARKIEELEESLRRFIQVDLQLHQLRDIKELLAKMSEMNTKLDDITR 145 (147)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHhhHh-HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444556666665555555556665544 66678888888888888888888888888877777776666665543
No 33
>PRK14162 heat shock protein GrpE; Provisional
Probab=76.18 E-value=44 Score=27.84 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKA 40 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i 40 (219)
.....+..+...+..+++++..+..+.
T Consensus 36 ~~~~e~~~l~~~l~~l~~e~~elkd~~ 62 (194)
T PRK14162 36 EKQNPVEDLEKEIADLKAKNKDLEDKY 62 (194)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777777777766664433
No 34
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.36 E-value=35 Score=29.27 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVE 45 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~ 45 (219)
.-..++.=|...++.|.++++.++..++....
T Consensus 119 ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~ 150 (233)
T PF04065_consen 119 EKEEARDWLKDSIDELNRQIEQLEAEIESLSS 150 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466778888999999999888877766554
No 35
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=73.59 E-value=21 Score=24.02 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q 027780 37 LKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQL 76 (219)
Q Consensus 37 e~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~ 76 (219)
+.+...-..-|...-..|+-..|+.++|-=|.|+..|...
T Consensus 5 ~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~ 44 (59)
T smart00685 5 QQRQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAA 44 (59)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHH
Confidence 3333333334444446899999999999999999877654
No 36
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=72.56 E-value=56 Score=27.31 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=47.1
Q ss_pred hcHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 027780 54 KNKRAAIQCLKRKR-----LYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMD 127 (219)
Q Consensus 54 ~~k~~A~~~Lk~KK-----~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~md 127 (219)
..+..|+.|+|... ++=+-.--...-+.+...++.+||+.-++.+....-+..-..||.=|..+ -+++..|+
T Consensus 41 ~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~l--kkl~~~~~ 117 (209)
T KOG2910|consen 41 AERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEAL--KKLQQEFD 117 (209)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcC
Confidence 45778999998432 11111212234456777888899999999888887777777777766543 45666553
No 37
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=71.89 E-value=42 Score=26.17 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 30 EKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLE 91 (219)
Q Consensus 30 ~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie 91 (219)
..++..++.++++.....|+.++...+..+-..-.-+..+++...++......+...+.+++
T Consensus 26 ~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~ 87 (131)
T PF11068_consen 26 QEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQ 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555556666654443332222223334455555555555555555554444
No 38
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=71.82 E-value=33 Score=24.31 Aligned_cols=64 Identities=22% Similarity=0.320 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027780 69 YEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 147 (219)
Q Consensus 69 ~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~ 147 (219)
+++.|+.+......|+.+...|+.+..+ |..++. .++.-+.+++..-.-+..++.+.++|..|-
T Consensus 3 L~kEL~~Lr~IN~~ie~~~~~L~~a~~~-------------~~~v~~--~~~~t~~LLd~w~~IlSQte~~~~Ll~dp~ 66 (78)
T PF08651_consen 3 LEKELEQLRKINPVIEGLIETLRSAKSN-------------MNRVQE--TVESTNTLLDKWIRILSQTEHTQRLLLDPE 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5566666666666666666666655544 444433 245667778888888888999999998863
No 39
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=68.61 E-value=51 Score=27.53 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 24 ETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDAL 103 (219)
Q Consensus 24 ~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~am 103 (219)
.+++.++.-+..|+.+++....-++.++..|+. |...-+. ..+.+..+.. ....+..|.++|
T Consensus 2 ~~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~-----~~~a~~~-------F~~~l~d~~~------~~~gd~~i~~~L 63 (200)
T cd07637 2 ATIDEVETDVVEIEAKLDKLVKLCSGMIEAGKA-----YATTNKL-------FVSGIRDLSQ------QCKKDEMISECL 63 (200)
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH-------HHHHHHHHHH------HcCCchHHHHHH
Confidence 456777788888888888888888888766541 1111111 1121221111 123344577788
Q ss_pred HHHHHHHHHHhcc
Q 027780 104 RTGASTMKAMQKA 116 (219)
Q Consensus 104 k~~~~alk~~~~~ 116 (219)
+.-+.+++.+...
T Consensus 64 ~kF~~~l~ei~~~ 76 (200)
T cd07637 64 DKFGDSLQEMVNY 76 (200)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887653
No 40
>PRK09343 prefoldin subunit beta; Provisional
Probab=67.60 E-value=8.5 Score=29.46 Aligned_cols=37 Identities=24% Similarity=0.130 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027780 19 LDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKN 55 (219)
Q Consensus 19 i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~ 55 (219)
+.-+...+..|+++...|++++.......++.+..+.
T Consensus 80 ~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 80 KELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444444444444555444444455444433
No 41
>PRK14146 heat shock protein GrpE; Provisional
Probab=67.27 E-value=77 Score=26.83 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027780 19 LDKLNETLEMLEKKEKVL 36 (219)
Q Consensus 19 i~~Lr~~~~~L~kki~~L 36 (219)
+..|...+..+..++..+
T Consensus 56 ~~~l~~~l~~l~~e~~el 73 (215)
T PRK14146 56 ETSLQKELDNAKKEIESL 73 (215)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 344444444555554444
No 42
>COG5570 Uncharacterized small protein [Function unknown]
Probab=66.67 E-value=23 Score=23.24 Aligned_cols=49 Identities=31% Similarity=0.411 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH-HHHHHH
Q 027780 22 LNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYE-QQIEQL 76 (219)
Q Consensus 22 Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e-~~l~~~ 76 (219)
+.+.+..|+++--.|+++|+... ..-+.-+.+..-|||||+.- .+++++
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~------n~Ps~dd~~i~eLKRrKL~lKeeIEkL 52 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAM------NSPSSDDLAIRELKRRKLRLKEEIEKL 52 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHh------cCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888777766665432 13355678999999998643 344443
No 43
>PRK14140 heat shock protein GrpE; Provisional
Probab=65.60 E-value=78 Score=26.31 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027780 18 TLDKLNETLEMLEKKEKVLLK 38 (219)
Q Consensus 18 ~i~~Lr~~~~~L~kki~~Le~ 38 (219)
-|..+...+..+++++..+..
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd 58 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEE 58 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355566666556655555543
No 44
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.41 E-value=1.5e+02 Score=29.64 Aligned_cols=40 Identities=10% Similarity=0.221 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 027780 94 KATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQT 133 (219)
Q Consensus 94 ~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~ 133 (219)
..-.+++.-|.....++.-..+..++|+|..+...+.+..
T Consensus 146 r~y~e~a~~lqai~~ll~~F~~Yk~v~~I~~Ls~si~~~k 185 (793)
T KOG2180|consen 146 RSYGEAASPLQAILQLLNHFIAYKSVDEIANLSESIDKLK 185 (793)
T ss_pred ccHHHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4446778888888888887777889999988887777655
No 45
>PRK14143 heat shock protein GrpE; Provisional
Probab=61.18 E-value=1.1e+02 Score=26.39 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 15 ALTTLDKLNETLEMLEKKEKVLLKKA 40 (219)
Q Consensus 15 ~~~~i~~Lr~~~~~L~kki~~Le~~i 40 (219)
....+..|+..+..|++++..+..+.
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~ 90 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQY 90 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677777777776666554433
No 46
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=60.49 E-value=35 Score=30.31 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=26.2
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 53 AKNKRAAIQCLKRKRLYEQQIEQLGNFQLR 82 (219)
Q Consensus 53 ~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~ 82 (219)
.+|+..|+.|=|+||-|-|=|+++-..+.|
T Consensus 297 mKNREAARECRRKKKEYVKCLENRVAVLEN 326 (348)
T KOG3584|consen 297 MKNREAARECRRKKKEYVKCLENRVAVLEN 326 (348)
T ss_pred HhhHHHHHHHHHhHhHHHHHHHhHHHHHhc
Confidence 578999999999999999999888777665
No 47
>PF14282 FlxA: FlxA-like protein
Probab=60.11 E-value=69 Score=23.82 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 64 KRKRLYEQQIEQLGNFQLRIHDQMI 88 (219)
Q Consensus 64 k~KK~~e~~l~~~~~~~~~le~~~~ 88 (219)
.+++.+..+|..+..++..+.....
T Consensus 51 ~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777788877777776655443
No 48
>PRK14159 heat shock protein GrpE; Provisional
Probab=57.55 E-value=1.1e+02 Score=25.17 Aligned_cols=21 Identities=0% Similarity=0.029 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhccCCH
Q 027780 99 TVDALRTGASTMKAMQKATNI 119 (219)
Q Consensus 99 v~~amk~~~~alk~~~~~~~i 119 (219)
++.++...-+.|.++....++
T Consensus 102 l~~Gv~mi~k~l~~vL~k~Gv 122 (176)
T PRK14159 102 IKEGVQNTLDLFLKKLEKHGV 122 (176)
T ss_pred HHHHHHHHHHHHHHHHHHCcC
Confidence 344444444444444443333
No 49
>PRK14160 heat shock protein GrpE; Provisional
Probab=56.68 E-value=1.2e+02 Score=25.60 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 19 LDKLNETLEMLEKKEKVLLKKASVE 43 (219)
Q Consensus 19 i~~Lr~~~~~L~kki~~Le~~i~~~ 43 (219)
+..++..+..|..++..|+.++...
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~el 80 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEAL 80 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444433
No 50
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=56.09 E-value=1.1e+02 Score=24.92 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 19 LDKLNETLEMLE---------KKEKVLLKKASVEVEKAKDYSKA-KNKRAAIQCLKRKRLYEQQIEQLGN 78 (219)
Q Consensus 19 i~~Lr~~~~~L~---------kki~~Le~~i~~~~~~ak~~~~~-~~k~~A~~~Lk~KK~~e~~l~~~~~ 78 (219)
+..+|+.++... .=...+..++..+.....+++.. ++...|..++++.+++.+-...+..
T Consensus 100 ~mE~rE~lee~~~~~d~~~L~~l~~e~~~~~~~~~~~l~~~~~~~~d~~~A~~~~~kL~y~~kl~~ei~~ 169 (176)
T PRK03578 100 QMEWREAIEDARAARDVDALDALLAELRDERRERYAELGALLDSRGDDQAAAEAVRQLMFIEKLAQEIGA 169 (176)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655433 22233455566666666666655 6789999999999999886665544
No 51
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=55.85 E-value=1.7e+02 Score=27.05 Aligned_cols=56 Identities=18% Similarity=0.363 Sum_probs=37.7
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 027780 111 KAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQL 174 (219)
Q Consensus 111 k~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~lde~~ 174 (219)
|.+..=++.+.|+.+-..+..-+.....|...+...+ ..++..+..+....++..+
T Consensus 113 ktL~DFVd~~~v~~L~~~l~~~i~~~~~~~~~~d~~~--------~~~~~~~~~~~~~l~~~~~ 168 (412)
T PF04108_consen 113 KTLYDFVDEDSVEILRENLKISIDELQAIQEQLDNSL--------LQFDNDLRKLKKQLINKRL 168 (412)
T ss_pred CcHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHhhhhh
Confidence 3344456788999999999999988888888887643 2334446666544444443
No 52
>PF10679 DUF2491: Protein of unknown function (DUF2491); InterPro: IPR019621 This entry represents a family of bacterial uncharacterised proteins.
Probab=55.61 E-value=4.6 Score=34.19 Aligned_cols=11 Identities=55% Similarity=1.141 Sum_probs=8.0
Q ss_pred CcccccCCCCC
Q 027780 1 MFTRLFGKPKQ 11 (219)
Q Consensus 1 m~~~lFGk~~~ 11 (219)
||++||||+++
T Consensus 1 MF~klfgk~~~ 11 (212)
T PF10679_consen 1 MFSKLFGKKDK 11 (212)
T ss_pred ChhHhhCCCCC
Confidence 78888886543
No 53
>PRK14163 heat shock protein GrpE; Provisional
Probab=55.60 E-value=1.3e+02 Score=25.54 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q 027780 82 RIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVD 123 (219)
Q Consensus 82 ~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve 123 (219)
.|..++..++.|.....++..++..-+.|..+.+...+..|+
T Consensus 95 ~LLpVlDnLerAl~~~~l~~Gv~mi~k~l~~~L~k~Gv~~I~ 136 (214)
T PRK14163 95 ELLPVLDDVGRAREHGELVGGFKSVAESLETTVAKLGLQQFG 136 (214)
T ss_pred HHhhhHhHHHHHHhchhHHHHHHHHHHHHHHHHHHCCCEEeC
Confidence 334444555555544456666666666666666655555444
No 54
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=54.80 E-value=59 Score=25.61 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027780 18 TLDKLNETLEMLEKKEKVLLKKA 40 (219)
Q Consensus 18 ~i~~Lr~~~~~L~kki~~Le~~i 40 (219)
.+..+...+..+.++++.+..++
T Consensus 12 ~~~~~~~~l~~l~~~~~~l~~~~ 34 (165)
T PF01025_consen 12 EIEELEEELEELEKEIEELKERL 34 (165)
T ss_dssp HHCCCCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555554444333
No 55
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=54.47 E-value=98 Score=24.59 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDY 50 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~ 50 (219)
+.+.+|..|+.+++.|++-+..++..|+.....+-..
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l 127 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQL 127 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999888887776665555443
No 56
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=54.18 E-value=82 Score=22.88 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 15 ALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYS 51 (219)
Q Consensus 15 ~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~ 51 (219)
...++..+...+..+..+......+|.......+.++
T Consensus 19 ~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L 55 (127)
T smart00502 19 LEDALKQLISIIQEVEENAADVEAQIKAAFDELRNAL 55 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554444444
No 57
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=51.92 E-value=1.4e+02 Score=24.77 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 66 KRLYEQQIEQLGNFQLRIHDQMIMLEG 92 (219)
Q Consensus 66 KK~~e~~l~~~~~~~~~le~~~~~ie~ 92 (219)
+..+++.+..+...+.+|+..+..+..
T Consensus 82 k~a~e~~~~dlLpviDnlerAl~~~~~ 108 (193)
T COG0576 82 KYAIEKFAKDLLPVIDNLERALEAAED 108 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345556666666666666655544433
No 58
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=51.88 E-value=42 Score=21.48 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKA 40 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i 40 (219)
.+..+|..|...++.+.+|++.|++++
T Consensus 20 ~v~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 20 KVTSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456678888888888888888888765
No 59
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=50.41 E-value=1.4e+02 Score=24.33 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 37 LKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLR 82 (219)
Q Consensus 37 e~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~ 82 (219)
..++..+......++..++...|+.++++-+++.+-.+.+......
T Consensus 124 ~~~~~~~~~~l~~~~~~~d~~~A~~~~~rL~y~~kl~~ei~~~~~~ 169 (173)
T PRK01773 124 KQEQQAILTELSTALNSQQWQQASQINDRLRFIKKLIIEIERVEEK 169 (173)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566667788899999999999999877666544433
No 60
>PRK10869 recombination and repair protein; Provisional
Probab=49.97 E-value=2.5e+02 Score=27.13 Aligned_cols=45 Identities=9% Similarity=0.245 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027780 99 TVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALST 145 (219)
Q Consensus 99 v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~ 145 (219)
++..+..+...|..+. .++ +.+..+.+.+.+.....+++..-|..
T Consensus 242 ~~~~l~~~~~~l~~~~-~~d-~~~~~~~~~l~~~~~~l~~~~~~l~~ 286 (553)
T PRK10869 242 ILSQLYSAKQLLSELI-GMD-SKLSGVLDMLEEALIQIQEASDELRH 286 (553)
T ss_pred HHHHHHHHHHHHHHHh-hhC-HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445545554442 222 23444444444444444444444443
No 61
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=49.75 E-value=1.5e+02 Score=24.59 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHH-HHHHHHHHHHHHHhcCC
Q 027780 118 NIDDVDKTMDEI-NEQTENMKQIQEALSTP 146 (219)
Q Consensus 118 ~id~Ve~~mde~-~e~~e~~~eI~e~l~~~ 146 (219)
-+|+|+=+.|=+ .+.-...++|..-.+-|
T Consensus 171 ~tDnI~ilidy~c~kf~~~~~qir~~fgIP 200 (209)
T COG5124 171 TTDNIEILIDYLCKKFFLKPEQIRKEFGIP 200 (209)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHhcCCC
Confidence 356776666632 33334566676666543
No 62
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=49.16 E-value=2.5e+02 Score=27.05 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHHH----HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q 027780 118 NIDDVDKTMDEINEQT----ENMKQIQEALSTPIGAAADFDEDELEAELEELE 166 (219)
Q Consensus 118 ~id~Ve~~mde~~e~~----e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~ 166 (219)
....|.+-++++.+.. ....+|.+.|..- --++.+...-|..+.
T Consensus 377 ~ysel~e~leel~e~leeie~eq~ei~e~l~~L-----rk~E~eAr~kL~~~~ 424 (569)
T PRK04778 377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGL-----RKDELEAREKLERYR 424 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 3444544444444444 4444455555431 123444445555543
No 63
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=49.11 E-value=1.4e+02 Score=24.10 Aligned_cols=42 Identities=5% Similarity=0.139 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 39 KASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQ 80 (219)
Q Consensus 39 ~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~ 80 (219)
++..+......++..++...|..++++.+++.+-...+....
T Consensus 125 ~~~~~~~~l~~~~~~~d~~~A~~~~~~Lky~~kl~~ei~~~~ 166 (171)
T PRK05014 125 MFKTRLQQMVEQLDNEAWDAAADTVRKLKFLDKLRSEVEQLE 166 (171)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455666667788999999999999988666554433
No 64
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=48.04 E-value=1.5e+02 Score=24.10 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 18 TLDKLNETLEMLE-----KKEKVLLKKASVEVEKAKDYSKA-----KNKRAAIQCLKRKRLYEQQIEQLGNF 79 (219)
Q Consensus 18 ~i~~Lr~~~~~L~-----kki~~Le~~i~~~~~~ak~~~~~-----~~k~~A~~~Lk~KK~~e~~l~~~~~~ 79 (219)
.+..+|+.++... ..+..+..+|..+.......+.. ++...|..++++-+.+.+-...+...
T Consensus 96 e~me~rE~le~~~~~~d~~~l~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~A~~~v~kl~f~~kl~~ei~~~ 167 (173)
T PRK00294 96 QQMQLREELEELQDEADLAGVATFKRRLKAAQDELNESFAACWDDAARREEAERLMRRMQFLDKLAQEVRQL 167 (173)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655553 22344455555555444444432 34789999999999998866665543
No 65
>PRK14148 heat shock protein GrpE; Provisional
Probab=47.23 E-value=1.7e+02 Score=24.43 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027780 19 LDKLNETLEMLEKKEKVL 36 (219)
Q Consensus 19 i~~Lr~~~~~L~kki~~L 36 (219)
+..++..+..|+.++..+
T Consensus 42 ~~~l~~~l~~l~~e~~el 59 (195)
T PRK14148 42 LERAKDTIKELEDSCDQF 59 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 66
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=47.04 E-value=1.6e+02 Score=24.28 Aligned_cols=8 Identities=25% Similarity=0.061 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q 027780 58 AAIQCLKR 65 (219)
Q Consensus 58 ~A~~~Lk~ 65 (219)
.|..+|+.
T Consensus 73 ~A~~Al~~ 80 (221)
T PF04012_consen 73 QAELALAA 80 (221)
T ss_pred HHHHHHHc
Confidence 45555543
No 67
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=46.38 E-value=1.4e+02 Score=27.89 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 15 ALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDY-SKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQM 87 (219)
Q Consensus 15 ~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~-~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~ 87 (219)
....+..|+..+..+..++..|.+.+.......+.. .....+.....+.+.++.+...+..+...+..|...+
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444332222110000 0011223444455555566666666655555544433
No 68
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=46.11 E-value=90 Score=20.97 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027780 18 TLDKLNETLEMLEKKEKVLLKKA 40 (219)
Q Consensus 18 ~i~~Lr~~~~~L~kki~~Le~~i 40 (219)
-+.+|...+..+++.+..++.++
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444444
No 69
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=45.92 E-value=2.9e+02 Score=26.72 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=11.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH
Q 027780 13 TNALTTLDKLNETLEMLEKKEK 34 (219)
Q Consensus 13 ~~~~~~i~~Lr~~~~~L~kki~ 34 (219)
+.....|.+|..++..+..+|.
T Consensus 10 edl~~~I~~L~~~i~~~k~eV~ 31 (593)
T PF06248_consen 10 EDLRKSISRLSRRIEELKEEVH 31 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555443
No 70
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=45.67 E-value=51 Score=24.50 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKA 47 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~a 47 (219)
+...++..|+.+++.++.+++.|++++.....+.
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l 97 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQL 97 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777666666555444333
No 71
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=45.45 E-value=81 Score=23.47 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=21.1
Q ss_pred ccccCCCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 3 TRLFGKPKQE-TNALTTLDKLNETLEMLEKKEKVLLKKASV 42 (219)
Q Consensus 3 ~~lFGk~~~~-~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~ 42 (219)
+-+||.+... .++...|.-|-.+++=+.+-|..|+++|+.
T Consensus 53 ~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~ 93 (99)
T PF13758_consen 53 KEILGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLEA 93 (99)
T ss_pred HHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578875442 344444555555555555555555555543
No 72
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=44.85 E-value=3.4e+02 Score=27.21 Aligned_cols=69 Identities=19% Similarity=0.361 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 62 CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQE 141 (219)
Q Consensus 62 ~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e 141 (219)
|=.|++.+|..+.++...+-.-+..+..++.-. ..|....+. +-.+++.+|..++-..++..-...
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~-------------~~lr~~~~e-~~~~~e~L~~aL~amqdk~~~LE~ 608 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL-------------QELRKYEKE-SEKDTEVLMSALSAMQDKNQHLEN 608 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444667888888877776666666655555432 333333222 344566667666666666665555
Q ss_pred Hhc
Q 027780 142 ALS 144 (219)
Q Consensus 142 ~l~ 144 (219)
-|+
T Consensus 609 sLs 611 (697)
T PF09726_consen 609 SLS 611 (697)
T ss_pred hhh
Confidence 554
No 73
>PRK13990 cell division topological specificity factor MinE; Provisional
Probab=44.69 E-value=18 Score=26.50 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=13.6
Q ss_pred CcccccCCCCCCccHHHHHHHH
Q 027780 1 MFTRLFGKPKQETNALTTLDKL 22 (219)
Q Consensus 1 m~~~lFGk~~~~~~~~~~i~~L 22 (219)
||.+|||..+++.+...|-.+|
T Consensus 1 ~l~~lf~~~~k~~Sa~vAKeRL 22 (90)
T PRK13990 1 MLAKLFGLSKKQQSASVAKERL 22 (90)
T ss_pred ChhHhhCcccCCCcHHHHHHHh
Confidence 7899999654444555454444
No 74
>PRK14154 heat shock protein GrpE; Provisional
Probab=43.81 E-value=2e+02 Score=24.29 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027780 19 LDKLNETLEMLEKKEKVLLK 38 (219)
Q Consensus 19 i~~Lr~~~~~L~kki~~Le~ 38 (219)
+..|...+..+++++..+..
T Consensus 54 ~~~l~~el~~le~e~~elkd 73 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKT 73 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 75
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=43.77 E-value=1.6e+02 Score=23.35 Aligned_cols=42 Identities=10% Similarity=0.028 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 027780 36 LLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLG 77 (219)
Q Consensus 36 Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~ 77 (219)
+..++..+......++..++...|..++++.+++.+-...+.
T Consensus 109 ~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLky~~kl~~~i~ 150 (157)
T TIGR00714 109 VKKMFQTRHQLLVEQLDNQTWAAAADYTRKLRFLDKLRSSAE 150 (157)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666667777889999999999999987665554
No 76
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=43.10 E-value=1.5e+02 Score=22.75 Aligned_cols=14 Identities=7% Similarity=0.221 Sum_probs=7.8
Q ss_pred cCCHHHHHHHHHHH
Q 027780 116 ATNIDDVDKTMDEI 129 (219)
Q Consensus 116 ~~~id~Ve~~mde~ 129 (219)
.+|.+....++|++
T Consensus 130 ~l~~~~~~~lid~~ 143 (147)
T TIGR01144 130 NIDKQAQKDLIDKL 143 (147)
T ss_pred HcCHHHHHHHHHHH
Confidence 45555555555554
No 77
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=43.09 E-value=1.2e+02 Score=21.64 Aligned_cols=57 Identities=9% Similarity=0.193 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccC
Q 027780 61 QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTE-TVDALRTGASTMKAMQKAT 117 (219)
Q Consensus 61 ~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~-v~~amk~~~~alk~~~~~~ 117 (219)
.+.+-+.++..++++-......|.+.-.++...+.... +-..++.+.+.++.+.+.-
T Consensus 9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~ 66 (92)
T PF03908_consen 9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRD 66 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777888888878888777777776665544 3447888888888887653
No 78
>PRK11020 hypothetical protein; Provisional
Probab=42.21 E-value=1.5e+02 Score=22.59 Aligned_cols=51 Identities=22% Similarity=0.107 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 31 KKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQL 81 (219)
Q Consensus 31 kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~ 81 (219)
..|..|..+++.+..+--.....|+...-..+.+.+-.+++.+.++-+.+.
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~ 55 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555554444445677887777788888778887777665544
No 79
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=42.12 E-value=2.3e+02 Score=24.82 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 027780 15 ALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQC 62 (219)
Q Consensus 15 ~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~ 62 (219)
+..++..|.++...|+..|+.|+++-++.....+....--....|+..
T Consensus 2 v~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~RV 49 (283)
T PF11285_consen 2 VQEALKELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAIRV 49 (283)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHH
Confidence 356788999999999999999988877777777776533345555543
No 80
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.07 E-value=2.3e+02 Score=24.63 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH-HHHHhcC
Q 027780 73 IEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQ-IQEALST 145 (219)
Q Consensus 73 l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~e-I~e~l~~ 145 (219)
+........++.+....|+..-...+..+|+.--...-+.+..-..+.=|..+-..+++.....++ +...|..
T Consensus 117 ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~ 190 (291)
T PF10475_consen 117 LLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIEEQLDSDLSK 190 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444455666666677777777777888777666666554333445555555555555544443 4444443
No 81
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=41.81 E-value=1.1e+02 Score=20.97 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 22 LNETLEMLEKKEKVLLKKASVEVEKAKDY-SKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRI 83 (219)
Q Consensus 22 Lr~~~~~L~kki~~Le~~i~~~~~~ak~~-~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~l 83 (219)
|+..|+.|.-.-+.|....+.....+-.+ +.-|....+..+||-++.|.......++++..|
T Consensus 3 L~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~~e~~~~llal 65 (67)
T PF10506_consen 3 LKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERCKEAYEVLLAL 65 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444433333333333333332222 345667778888898888888887777766654
No 82
>PRK14158 heat shock protein GrpE; Provisional
Probab=41.66 E-value=2.1e+02 Score=23.87 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKA 40 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i 40 (219)
.....+..+...+..++.++..+..+.
T Consensus 37 ~~~~~~~~le~~l~~le~e~~el~d~~ 63 (194)
T PRK14158 37 AAADRIKELEEALAAKEAEAAANWDKY 63 (194)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445557777777777777766664433
No 83
>PRK14155 heat shock protein GrpE; Provisional
Probab=41.37 E-value=2.2e+02 Score=24.01 Aligned_cols=54 Identities=4% Similarity=-0.016 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccCCHHHH
Q 027780 69 YEQQIEQLGNFQLRIHDQMIMLEGAK---ATTETVDALRTGASTMKAMQKATNIDDV 122 (219)
Q Consensus 69 ~e~~l~~~~~~~~~le~~~~~ie~a~---~n~~v~~amk~~~~alk~~~~~~~id~V 122 (219)
.++.+..+...+.+|+..+..+.... ....++..++..-+.|..+....++..|
T Consensus 62 ~~~~~~~LLpV~DnLerAl~~~~~~~~~~~~~~i~~Gvemi~k~~~~~L~k~GV~~I 118 (208)
T PRK14155 62 IQKFARDLLGAADNLGRATAASPKDSADPAVKNFIIGVEMTEKELLGAFERNGLKKI 118 (208)
T ss_pred HHHHHHHHhhHHhhHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHCCCcee
Confidence 34444445555555544443322110 1123444444444444444444444433
No 84
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=40.88 E-value=1e+02 Score=23.70 Aligned_cols=34 Identities=29% Similarity=0.286 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKA 47 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~a 47 (219)
+-..++..|+.+.+.|+.|++.|+++.+....+.
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l 100 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERL 100 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777766554444333
No 85
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=40.58 E-value=2.1e+02 Score=23.58 Aligned_cols=110 Identities=14% Similarity=0.232 Sum_probs=55.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 13 TNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEG 92 (219)
Q Consensus 13 ~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~ 92 (219)
..++......+..++.|+.++..+.+........-+. +-..+..+...+.. +...|.
T Consensus 20 ~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~-------------------l~~~~~e~~~~~~~----la~~E~ 76 (236)
T PF09325_consen 20 KEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQE-------------------LASALAEFGSSFSQ----LAKSEE 76 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHH----hhcccC
Confidence 4667888888888888888877665444333222111 11112222111111 111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027780 93 AKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALST 145 (219)
Q Consensus 93 a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~ 145 (219)
...-...+..+..+...+..+...........+.+-+.+-.-...-|.++|..
T Consensus 77 ~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~ 129 (236)
T PF09325_consen 77 EKSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNR 129 (236)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223334444444444444444444455555666666666666666666654
No 86
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=40.12 E-value=92 Score=28.12 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=23.6
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 027780 2 FTRLFGKPKQETNALTTLDKLNETLEML----EKKEKVLLKKASVEVEKAKDYS 51 (219)
Q Consensus 2 ~~~lFGk~~~~~~~~~~i~~Lr~~~~~L----~kki~~Le~~i~~~~~~ak~~~ 51 (219)
|..|||++ +.+|.+-+..+++.+..| +++.+.....+.......|..+
T Consensus 1 M~FlF~k~--~KtP~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL 52 (335)
T PF08569_consen 1 MSFLFKKK--PKTPAELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEIL 52 (335)
T ss_dssp -------------HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCC--CCCHHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHh
Confidence 67899973 245667777788888777 3444444455666666666665
No 87
>PRK14149 heat shock protein GrpE; Provisional
Probab=40.03 E-value=2.2e+02 Score=23.69 Aligned_cols=10 Identities=0% Similarity=0.019 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 027780 19 LDKLNETLEM 28 (219)
Q Consensus 19 i~~Lr~~~~~ 28 (219)
+..++..+..
T Consensus 45 ~~~l~~e~~e 54 (191)
T PRK14149 45 KEDFELKYKE 54 (191)
T ss_pred HHHHHHHHHH
Confidence 3334433333
No 88
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.91 E-value=2.1e+02 Score=23.49 Aligned_cols=29 Identities=34% Similarity=0.241 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 19 LDKLNETLEMLEKKEKVLLKKASVEVEKA 47 (219)
Q Consensus 19 i~~Lr~~~~~L~kki~~Le~~i~~~~~~a 47 (219)
...++..+..|.+++..+..+|.......
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i 92 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKI 92 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555544444444333
No 89
>PRK06798 fliD flagellar capping protein; Validated
Probab=39.36 E-value=1.7e+02 Score=27.36 Aligned_cols=6 Identities=67% Similarity=0.866 Sum_probs=2.2
Q ss_pred HHHHhc
Q 027780 110 MKAMQK 115 (219)
Q Consensus 110 lk~~~~ 115 (219)
|..+++
T Consensus 430 l~~~~~ 435 (440)
T PRK06798 430 IKAMTK 435 (440)
T ss_pred HHHHhc
Confidence 333333
No 90
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=39.30 E-value=2.1e+02 Score=26.93 Aligned_cols=16 Identities=25% Similarity=0.117 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 027780 28 MLEKKEKVLLKKASVE 43 (219)
Q Consensus 28 ~L~kki~~Le~~i~~~ 43 (219)
.|..++..|+++|+..
T Consensus 410 ~l~~~i~~l~~~i~~~ 425 (462)
T PRK08032 410 GVNKTLKKLTKQYNAV 425 (462)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 91
>PRK13991 cell division topological specificity factor MinE; Provisional
Probab=39.13 E-value=22 Score=25.80 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=13.3
Q ss_pred CcccccCCCCCCccHHHHHHHHHH
Q 027780 1 MFTRLFGKPKQETNALTTLDKLNE 24 (219)
Q Consensus 1 m~~~lFGk~~~~~~~~~~i~~Lr~ 24 (219)
+|++|||+++ +.+...|-.+|+-
T Consensus 3 ~l~~~f~~k~-~~Sa~~AKeRLql 25 (87)
T PRK13991 3 FLDGLFGRKR-DSSSELAKQRLLT 25 (87)
T ss_pred hHHHhhcCCC-CCcHHHHHHHHHH
Confidence 4788999643 2345555444443
No 92
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.05 E-value=2.3e+02 Score=23.57 Aligned_cols=75 Identities=11% Similarity=0.186 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 24 ETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDAL 103 (219)
Q Consensus 24 ~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~am 103 (219)
.+++..+..+..|+.+|+.....++.++-.| +.+...-+.+-..|..+... ...+..|..+|
T Consensus 2 ~~l~~~E~~~~~l~~~l~kl~K~~~~~~~ag-----~~~~~a~~~F~~~L~~~~~~-------------~~~d~~i~~~l 63 (200)
T cd07603 2 ASLEQVEADVSELETRLEKLLKLCNGMVDSG-----KTYVNANSLFVNSLNDLSDY-------------FRDDSLVQNCL 63 (200)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcc-------------cCCcHHHHHHH
Confidence 4555666666666666666665666655433 23333222332223322221 11233556777
Q ss_pred HHHHHHHHHHhcc
Q 027780 104 RTGASTMKAMQKA 116 (219)
Q Consensus 104 k~~~~alk~~~~~ 116 (219)
+.-+.+++.+...
T Consensus 64 ~kF~~~l~el~~~ 76 (200)
T cd07603 64 NKFIQALQEMNNF 76 (200)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776553
No 93
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=38.44 E-value=61 Score=17.62 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027780 26 LEMLEKKEKVLLKKASVE 43 (219)
Q Consensus 26 ~~~L~kki~~Le~~i~~~ 43 (219)
++.+..+|..|++++..|
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556666666655554
No 94
>PRK12765 flagellar capping protein; Provisional
Probab=38.11 E-value=2.4e+02 Score=27.53 Aligned_cols=28 Identities=7% Similarity=0.079 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 17 TTLDKLNETLEMLEKKEKVLLKKASVEV 44 (219)
Q Consensus 17 ~~i~~Lr~~~~~L~kki~~Le~~i~~~~ 44 (219)
.....|...++.|+++++.++++|+...
T Consensus 532 ~~~~~l~~~~~~l~~~~~~~~~rl~~~~ 559 (595)
T PRK12765 532 KYDESLTNEIKSLTTSKESTQELIDTKY 559 (595)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666655555554433
No 95
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=37.67 E-value=5.6e+02 Score=27.70 Aligned_cols=90 Identities=14% Similarity=0.238 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 027780 56 KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIM-LEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTE 134 (219)
Q Consensus 56 k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~-ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e 134 (219)
+..|..++-+-+.+..+.+....-+.+|-+.+.. +.+-.++-..+..+ +.++|..- =.++.+.|..++++|++-..
T Consensus 1449 ~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~v--A~~vL~l~-lp~tpeqi~~L~~~I~e~v~ 1525 (1758)
T KOG0994|consen 1449 QQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEV--AEEVLALE-LPLTPEQIQQLTGEIQERVA 1525 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH--HHHHHhcc-CCCCHHHHHHHHHHHHHHHH
Confidence 4556665555555544444443333333332222 11112222223322 33344431 23578999999999999999
Q ss_pred HHHHHHHHhcCCCC
Q 027780 135 NMKQIQEALSTPIG 148 (219)
Q Consensus 135 ~~~eI~e~l~~~~~ 148 (219)
....|..+|++..+
T Consensus 1526 sL~nVd~IL~~T~~ 1539 (1758)
T KOG0994|consen 1526 SLPNVDAILSRTKG 1539 (1758)
T ss_pred hcccHHHHHHhhhh
Confidence 99999999998754
No 96
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=37.50 E-value=1.6e+02 Score=21.47 Aligned_cols=89 Identities=18% Similarity=0.245 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 027780 69 YEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 148 (219)
Q Consensus 69 ~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~ 148 (219)
|+.++..+...+..|+..+.-.+.+... +..+..+..+.+.+-..+=.-.++++...+.+..+..+.--.-+...
T Consensus 11 l~~~~~~l~~~~~~l~~~~~E~~~v~~E---L~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~-- 85 (105)
T cd00632 11 LQQQLQAYIVQRQKVEAQLNENKKALEE---LEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQ-- 85 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3444445555555544444433333332 33333455555555443322345566666666655555433344332
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 027780 149 AAADFDEDELEAELEELEGA 168 (219)
Q Consensus 149 ~~~~~DedELe~EL~~L~~e 168 (219)
-+++..++.++...
T Consensus 86 ------~~~l~~~~~elk~~ 99 (105)
T cd00632 86 ------EEDLQEKLKELQEK 99 (105)
T ss_pred ------HHHHHHHHHHHHHH
Confidence 25667777766544
No 97
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=37.12 E-value=1.2e+02 Score=20.29 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027780 17 TTLDKLNETLEMLEKKEKVLL 37 (219)
Q Consensus 17 ~~i~~Lr~~~~~L~kki~~Le 37 (219)
-++..|...|..|+..|..++
T Consensus 21 lSv~EL~~RIa~L~aEI~R~~ 41 (59)
T PF06698_consen 21 LSVEELEERIALLEAEIARLE 41 (59)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 345556655555555554443
No 98
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=36.56 E-value=96 Score=21.70 Aligned_cols=48 Identities=21% Similarity=0.410 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHH
Q 027780 120 DDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAE 169 (219)
Q Consensus 120 d~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~ 169 (219)
+.|+.+-.+|..-....++|...-...+..+ .++.++..|++.|..+.
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~--~~d~~~~~el~~l~~~i 54 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILSSP--DQDSELKRELDELTDEI 54 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcchhHHHHHHHHHHHH
Confidence 3455555555555555555555555444321 13457889999887664
No 99
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=36.08 E-value=2.4e+02 Score=26.52 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027780 20 DKLNETLEMLEKKEKVLLKKASV 42 (219)
Q Consensus 20 ~~Lr~~~~~L~kki~~Le~~i~~ 42 (219)
..+..++..|+++++.++.+++.
T Consensus 409 ~~l~~~i~~l~~~i~~~~~rl~~ 431 (462)
T PRK08032 409 DGVNKTLKKLTKQYNAVSDSIDA 431 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666555544
No 100
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=35.38 E-value=2.6e+02 Score=23.28 Aligned_cols=8 Identities=25% Similarity=0.115 Sum_probs=4.2
Q ss_pred HHHHHHHH
Q 027780 57 RAAIQCLK 64 (219)
Q Consensus 57 ~~A~~~Lk 64 (219)
..|..+|+
T Consensus 73 ~~A~~Al~ 80 (219)
T TIGR02977 73 EKAELALS 80 (219)
T ss_pred HHHHHHHH
Confidence 45555555
No 101
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=34.43 E-value=3.5e+02 Score=24.36 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027780 119 IDDVDKTMDEINEQTENMKQIQEALSTP 146 (219)
Q Consensus 119 id~Ve~~mde~~e~~e~~~eI~e~l~~~ 146 (219)
...++++|+++....+.+++-...++++
T Consensus 307 T~~L~eVm~e~E~~KqemEe~G~~msDG 334 (384)
T KOG0972|consen 307 TETLDEVMDEIEQLKQEMEEQGAKMSDG 334 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 5677888888888878788777777764
No 102
>PRK14147 heat shock protein GrpE; Provisional
Probab=34.25 E-value=2.6e+02 Score=22.77 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 027780 22 LNETLEMLEKKEKVL 36 (219)
Q Consensus 22 Lr~~~~~L~kki~~L 36 (219)
+...+..|++++..+
T Consensus 23 l~~~l~~l~~e~~el 37 (172)
T PRK14147 23 LKAEVESLRSEIALV 37 (172)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 103
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=33.95 E-value=95 Score=21.97 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 60 IQCLKRKRLYEQQIEQLGNFQLRIHDQMIM 89 (219)
Q Consensus 60 ~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ 89 (219)
..++.+|+.+++.|..+..+...+|+.-..
T Consensus 5 ~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 5 KELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888887777666666665554443
No 104
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=33.81 E-value=2.6e+02 Score=22.72 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 027780 33 EKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQ 71 (219)
Q Consensus 33 i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~ 71 (219)
.+.++.+|.++.....++.-.++...|+.|.-+.+++..
T Consensus 121 k~q~q~ri~q~~~qlge~~esk~~~~Al~~i~rlrY~~~ 159 (168)
T KOG3192|consen 121 KSQNQERIAQCKQQLGEAFESKKYDEALKKILRLRYWYE 159 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 344577888888888888877888999988887776654
No 105
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.47 E-value=1.2e+02 Score=22.93 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 19 LDKLNETLEMLEKKEKVLLKKASVEVEKAKD 49 (219)
Q Consensus 19 i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~ 49 (219)
....++.+..|+++-++|++...+.....++
T Consensus 76 ~k~see~IeaLqkkK~YlEk~v~eaE~nLre 106 (114)
T KOG3501|consen 76 MKSSEEKIEALQKKKTYLEKTVSEAEQNLRE 106 (114)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666665555444333333
No 106
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.36 E-value=2e+02 Score=21.25 Aligned_cols=66 Identities=20% Similarity=0.347 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Q 027780 94 KATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEG 167 (219)
Q Consensus 94 ~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~ 167 (219)
......++.+...+.+.+.+-+-+=.-+++++..++.+..+..+.--..+... .+.|...+.++..
T Consensus 37 ~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~--------~~~l~~~l~e~q~ 102 (110)
T TIGR02338 37 EKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQ--------EERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 33344455555666666666554433457777777777776665544444332 2455555555543
No 107
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.26 E-value=1.8e+02 Score=21.24 Aligned_cols=34 Identities=26% Similarity=0.217 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKA 47 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~a 47 (219)
+.+.++..|...++.++.+++.++++++......
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~ 93 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKL 93 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777776666665544433
No 108
>TIGR01215 minE cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites.
Probab=33.15 E-value=31 Score=24.60 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=11.9
Q ss_pred CcccccCCCCCCccHHHHHHHHH
Q 027780 1 MFTRLFGKPKQETNALTTLDKLN 23 (219)
Q Consensus 1 m~~~lFGk~~~~~~~~~~i~~Lr 23 (219)
+|++|||+++ .+...|-.+|+
T Consensus 3 l~~~f~~~k~--~Sa~~AKeRLq 23 (81)
T TIGR01215 3 LLEFFKSRKK--NSAEVAKDRLK 23 (81)
T ss_pred hHHHhhcCCC--CcHHHHHHHHH
Confidence 3677787643 34555555554
No 109
>PRK10807 paraquat-inducible protein B; Provisional
Probab=33.09 E-value=4.6e+02 Score=25.35 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 027780 19 LDKLNETLEMLEKK 32 (219)
Q Consensus 19 i~~Lr~~~~~L~kk 32 (219)
+..|..++..+-.+
T Consensus 415 l~~l~~~~~~il~k 428 (547)
T PRK10807 415 LAQIQQKLMEALDK 428 (547)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444433333333
No 110
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=32.83 E-value=1.3e+02 Score=25.67 Aligned_cols=41 Identities=20% Similarity=0.089 Sum_probs=27.3
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 2 FTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVE 43 (219)
Q Consensus 2 ~~~lFGk~~~~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~ 43 (219)
|+++|.|... ......+.+|..++..++..++.++...+..
T Consensus 1 mG~~f~K~~~-~~~~~~L~rle~qi~q~~~~~~~~qs~l~~~ 41 (251)
T COG5415 1 MGSRFDKDFV-TKYTADLSRLESQIHQLDVALKKSQSILSQW 41 (251)
T ss_pred CCcccccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788887543 3345567788888888888877765544443
No 111
>PRK14157 heat shock protein GrpE; Provisional
Probab=32.36 E-value=3.2e+02 Score=23.38 Aligned_cols=6 Identities=33% Similarity=0.595 Sum_probs=2.4
Q ss_pred HHHHhc
Q 027780 139 IQEALS 144 (219)
Q Consensus 139 I~e~l~ 144 (219)
+..+|.
T Consensus 160 l~~vL~ 165 (227)
T PRK14157 160 IDKAFE 165 (227)
T ss_pred HHHHHH
Confidence 344443
No 112
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=32.21 E-value=4e+02 Score=24.36 Aligned_cols=12 Identities=0% Similarity=0.479 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 027780 121 DVDKTMDEINEQ 132 (219)
Q Consensus 121 ~Ve~~mde~~e~ 132 (219)
+|-..+..+..+
T Consensus 332 ~IKqAl~kLk~E 343 (359)
T PF10498_consen 332 KIKQALTKLKQE 343 (359)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 113
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=31.92 E-value=1.8e+02 Score=20.21 Aligned_cols=25 Identities=32% Similarity=0.195 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 16 LTTLDKLNETLEMLEKKEKVLLKKA 40 (219)
Q Consensus 16 ~~~i~~Lr~~~~~L~kki~~Le~~i 40 (219)
+..|..|...-..|.++.-.+..-|
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~I 35 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTI 35 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4557777777777777755544333
No 114
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=31.48 E-value=2.1e+02 Score=21.05 Aligned_cols=47 Identities=26% Similarity=0.490 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHH-HhcCCCCCCCCCCHHHHHHHHHHHHH
Q 027780 120 DDVDKTMDEINEQTENMKQ-IQE-ALSTPIGAAADFDEDELEAELEELEG 167 (219)
Q Consensus 120 d~Ve~~mde~~e~~e~~~e-I~e-~l~~~~~~~~~~DedELe~EL~~L~~ 167 (219)
+.|+.+.+.+....-..-| |.. +|..+++. -+++|+||..+++++-.
T Consensus 10 ~eI~kLqe~lk~~e~keAERigRiAlKAGLge-ieI~d~eL~~aFeeiAa 58 (98)
T PRK13848 10 EEIAKLQEQLKQAETREAERIGRIALKAGLGE-IEIEEAELQAAFEELAK 58 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc-cccCHHHHHHHHHHHHH
Confidence 3456666666555544444 444 45566664 37899999999999864
No 115
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=31.25 E-value=4.7e+02 Score=24.89 Aligned_cols=72 Identities=10% Similarity=0.073 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh-c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 20 DKLNETLEMLEKKEKVLLK-KASVEVEKAKDYSKAK-N-KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLE 91 (219)
Q Consensus 20 ~~Lr~~~~~L~kki~~Le~-~i~~~~~~ak~~~~~~-~-k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie 91 (219)
.+|.++....+.....++. +++...+.+...+... . +..-..+...||..|+.+.++...+..+...+..+.
T Consensus 328 sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 328 SQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544 3433333333322111 1 233344566777778777777776666666555544
No 116
>PRK09343 prefoldin subunit beta; Provisional
Probab=30.90 E-value=2e+02 Score=21.85 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKA 47 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~a 47 (219)
+...++..|..+++.++.+|+.|+++......+.
T Consensus 68 d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l 101 (121)
T PRK09343 68 DKTKVEKELKERKELLELRSRTLEKQEKKLREKL 101 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777766555444333
No 117
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=30.49 E-value=1.3e+02 Score=19.10 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 20 DKLNETLEMLEKKEKVLLKKASVEV 44 (219)
Q Consensus 20 ~~Lr~~~~~L~kki~~Le~~i~~~~ 44 (219)
.=|++.-+.++++|..+..+|....
T Consensus 8 elLqe~~d~IEqkiedid~qIaeLe 32 (46)
T PF08946_consen 8 ELLQEHYDNIEQKIEDIDEQIAELE 32 (46)
T ss_dssp -------THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhHHHHHHHHHHHH
Confidence 3456666677777777766665544
No 118
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=30.23 E-value=2.8e+02 Score=26.15 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027780 118 NIDDVDKTMDEINEQTENMKQIQEAL 143 (219)
Q Consensus 118 ~id~Ve~~mde~~e~~e~~~eI~e~l 143 (219)
.-.+++++..+..+.....++....+
T Consensus 403 T~~e~~kL~~E~~~l~~ei~~l~~~l 428 (445)
T cd00187 403 TKLEREKLLKELKELEAEIEDLEKIL 428 (445)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444
No 119
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.90 E-value=98 Score=20.45 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 19 LDKLNETLEMLEKKEKVLLKKASV 42 (219)
Q Consensus 19 i~~Lr~~~~~L~kki~~Le~~i~~ 42 (219)
..+++.++..++++++.+++++++
T Consensus 43 ~~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 43 RLRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888777776654
No 120
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=29.81 E-value=38 Score=24.35 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=11.3
Q ss_pred CcccccCCCCCCccHHHHHHHHH
Q 027780 1 MFTRLFGKPKQETNALTTLDKLN 23 (219)
Q Consensus 1 m~~~lFGk~~~~~~~~~~i~~Lr 23 (219)
+|++|||+++ .+...|-.+|+
T Consensus 3 l~~~f~~~k~--~Sa~vAKeRLq 23 (84)
T PRK13989 3 ILSFLLGEKK--KTASVAKERLQ 23 (84)
T ss_pred hHHHhhcCCC--CcHHHHHHHHH
Confidence 3778888643 34444444443
No 121
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.32 E-value=4.7e+02 Score=24.30 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 16 LTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKD 49 (219)
Q Consensus 16 ~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~ 49 (219)
...|..+......+..+++.|..+.......+++
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777666555555544
No 122
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=29.09 E-value=2.3e+02 Score=21.76 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 13 TNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYS 51 (219)
Q Consensus 13 ~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~ 51 (219)
......+..|.-++..|+++.+.++.+++.....+.+.+
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666777777777777777777777766665555544
No 123
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.01 E-value=1.8e+02 Score=19.77 Aligned_cols=21 Identities=24% Similarity=0.036 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027780 24 ETLEMLEKKEKVLLKKASVEV 44 (219)
Q Consensus 24 ~~~~~L~kki~~Le~~i~~~~ 44 (219)
.++..|+-++.+.+.-|+...
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln 24 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELN 24 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 124
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=28.56 E-value=1.7e+02 Score=20.88 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKD 49 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~ 49 (219)
+....+..|...++.++..+..|.+++.....+.++
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777776665554444433
No 125
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=28.56 E-value=2.1e+02 Score=20.95 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEK 46 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ 46 (219)
+..+|+.-+..++..|++.+..+...+......
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~ 106 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQ 106 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888887776666544433
No 126
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=28.51 E-value=81 Score=19.68 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=18.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHH
Q 027780 45 EKAKDYSKAKNKRAAIQCLKRK 66 (219)
Q Consensus 45 ~~ak~~~~~~~k~~A~~~Lk~K 66 (219)
.-|+.|+..|++..|+.+|..-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~ev 25 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEV 25 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHH
Confidence 4689999999999999888753
No 127
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=28.05 E-value=2.4e+02 Score=20.48 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=25.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027780 13 TNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAK 54 (219)
Q Consensus 13 ~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~ 54 (219)
+.....|..+......+..+++.|..+.......+.+..+.|
T Consensus 25 ~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~ 66 (108)
T PF02403_consen 25 EEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG 66 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc
Confidence 345566777777777777777777655544444444444444
No 128
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=27.75 E-value=4.2e+02 Score=26.36 Aligned_cols=6 Identities=33% Similarity=0.467 Sum_probs=3.5
Q ss_pred ccccCC
Q 027780 3 TRLFGK 8 (219)
Q Consensus 3 ~~lFGk 8 (219)
..||+.
T Consensus 563 ~~lF~~ 568 (661)
T PRK06664 563 RELFAF 568 (661)
T ss_pred HHHhcC
Confidence 357764
No 129
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=27.45 E-value=5.6e+02 Score=24.58 Aligned_cols=43 Identities=5% Similarity=0.237 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027780 99 TVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALST 145 (219)
Q Consensus 99 v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~ 145 (219)
++..+..+...|..+ ++ +.+..+.+.+.+.....+++..-|..
T Consensus 249 ~~~~l~~~~~~l~~~---~d-~~~~~~~~~l~~~~~~l~d~~~~l~~ 291 (563)
T TIGR00634 249 LLEGLGEAQLALASV---ID-GSLRELAEQVGNALTEVEEATRELQN 291 (563)
T ss_pred HHHHHHHHHHHHHHh---hh-HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554 22 23444444444444444444444433
No 130
>PRK10698 phage shock protein PspA; Provisional
Probab=27.21 E-value=3.8e+02 Score=22.56 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 19 LDKLNETLEMLEKKEKVLLKKASVE 43 (219)
Q Consensus 19 i~~Lr~~~~~L~kki~~Le~~i~~~ 43 (219)
-..+...+..+...+...+.+...-
T Consensus 54 ~k~~er~~~~~~~~~~~~e~kA~~A 78 (222)
T PRK10698 54 KKQLTRRIEQAEAQQVEWQEKAELA 78 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666655555433
No 131
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=27.08 E-value=5.9e+02 Score=24.73 Aligned_cols=48 Identities=15% Similarity=0.343 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027780 98 ETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTP 146 (219)
Q Consensus 98 ~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~ 146 (219)
.++.+++.....|+.+.+.++ .+|....+++........+++.-|...
T Consensus 142 ~l~~~in~~~~~L~~l~~~i~-~~I~~~V~~vNsLl~qIa~lN~qI~~~ 189 (552)
T COG1256 142 TLVNQINNTYEQLTDLRKDIN-AEIAATVDEVNSLLKQIADLNKQIRKV 189 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666766666555 345555566655555555555555443
No 132
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=26.96 E-value=96 Score=18.30 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027780 120 DDVDKTMDEINEQTENM 136 (219)
Q Consensus 120 d~Ve~~mde~~e~~e~~ 136 (219)
+.+++++|+|.+..+..
T Consensus 3 ~~~D~lLDeId~vLe~N 19 (33)
T TIGR03687 3 EGVDDLLDEIDGVLESN 19 (33)
T ss_pred chHHHHHHHHHHHHHHh
Confidence 45677777777666543
No 133
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.82 E-value=2.6e+02 Score=20.60 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKA 47 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~a 47 (219)
+...++.-+...++.|+++++.+++.+.......
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~ 117 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQI 117 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777777766665544333
No 134
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=26.44 E-value=3.4e+02 Score=21.77 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q 027780 37 LKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQL 76 (219)
Q Consensus 37 e~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~ 76 (219)
..++..+......++..++...|..++++-+++.+-...+
T Consensus 119 ~~~~~~~~~~l~~~f~~~d~~~A~~~~~~L~y~~kl~~~i 158 (166)
T PRK01356 119 ELMYKNEIDSLKQAFEEQNLSDATIKTSKLKYIGTLLNKL 158 (166)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666677788999999999999998865544
No 135
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=26.43 E-value=5.8e+02 Score=24.43 Aligned_cols=7 Identities=29% Similarity=0.781 Sum_probs=4.5
Q ss_pred ccccCCC
Q 027780 3 TRLFGKP 9 (219)
Q Consensus 3 ~~lFGk~ 9 (219)
++|||+-
T Consensus 83 kn~fG~y 89 (507)
T PF05600_consen 83 KNIFGRY 89 (507)
T ss_pred cceeccc
Confidence 4688853
No 136
>PRK14144 heat shock protein GrpE; Provisional
Probab=26.37 E-value=3.9e+02 Score=22.38 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027780 19 LDKLNETLEMLEKKEKVLL 37 (219)
Q Consensus 19 i~~Lr~~~~~L~kki~~Le 37 (219)
+..+...+..+++++..+.
T Consensus 47 ~~~l~~~i~~le~e~~elk 65 (199)
T PRK14144 47 YTALEEQLTLAEQKAHENW 65 (199)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555443
No 137
>PRK14127 cell division protein GpsB; Provisional
Probab=26.34 E-value=2.1e+02 Score=21.58 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=20.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHH
Q 027780 110 MKAMQKATNIDDVDKTMDEINEQTENM 136 (219)
Q Consensus 110 lk~~~~~~~id~Ve~~mde~~e~~e~~ 136 (219)
.+.-..+.+.++|+..+|++.+..+..
T Consensus 16 F~~~~RGYd~~EVD~FLd~V~~dye~l 42 (109)
T PRK14127 16 FKTSMRGYDQDEVDKFLDDVIKDYEAF 42 (109)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 333346889999999999998766544
No 138
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=26.26 E-value=3.9e+02 Score=25.49 Aligned_cols=24 Identities=29% Similarity=0.345 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 21 KLNETLEMLEKKEKVLLKKASVEV 44 (219)
Q Consensus 21 ~Lr~~~~~L~kki~~Le~~i~~~~ 44 (219)
.|..++..|+++|..+.++++...
T Consensus 426 ~l~~~i~~l~~~i~~~~~rl~~~e 449 (483)
T COG1345 426 SLNKQIKSLDKDIKSLDKRLEAAE 449 (483)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544444433
No 139
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=26.22 E-value=3.6e+02 Score=21.97 Aligned_cols=64 Identities=14% Similarity=0.177 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 25 TLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKA 95 (219)
Q Consensus 25 ~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~a~~ 95 (219)
....|+.+...+..+|++...... ...++..--++|+.|+-.|. +...+..|++-+..++....
T Consensus 86 R~~lLe~~~~~l~~ri~eLe~~l~---~kad~vvsYqll~hr~e~ee----~~~~l~~le~~~~~~e~~~~ 149 (175)
T PRK13182 86 DFEQLEAQLNTITRRLDELERQLQ---QKADDVVSYQLLQHRREMEE----MLERLQKLEARLKKLEPIYI 149 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhHHHHHhHHHHHH----HHHHHHHHHHHHHHHHhhcc
Confidence 344455555555554544432211 23456667789998877665 55555677777777665433
No 140
>cd06571 Bac_DnaA_C C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Probab=26.18 E-value=93 Score=22.10 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=18.6
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHHH---HHHHHHHH
Q 027780 3 TRLFGKPKQETNALTTLDKLNETLEM---LEKKEKVL 36 (219)
Q Consensus 3 ~~lFGk~~~~~~~~~~i~~Lr~~~~~---L~kki~~L 36 (219)
+++||+.+ -.++-.++.+++..+.. +...++.|
T Consensus 51 g~~fg~r~-hStV~~a~~ri~~~~~~d~~~~~~v~~i 86 (90)
T cd06571 51 GRAFGGRD-HSTVLHAVRKIEELLEEDPELKEDVEEL 86 (90)
T ss_pred HHHhCCCC-HhHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 56788432 24566677777766642 44444444
No 141
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=25.94 E-value=2.9e+02 Score=20.70 Aligned_cols=8 Identities=38% Similarity=0.605 Sum_probs=0.0
Q ss_pred cccccCCC
Q 027780 2 FTRLFGKP 9 (219)
Q Consensus 2 ~~~lFGk~ 9 (219)
|++.|.++
T Consensus 6 ~~~~~k~~ 13 (102)
T PF01519_consen 6 FNRQFKGN 13 (102)
T ss_dssp --------
T ss_pred chhhhccc
Confidence 44455443
No 142
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=25.68 E-value=2.1e+02 Score=19.16 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027780 22 LNETLEMLEKKEKVLLKKA 40 (219)
Q Consensus 22 Lr~~~~~L~kki~~Le~~i 40 (219)
+..++..|+++....+.+.
T Consensus 30 iEqRLa~LE~rL~~ae~ra 48 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRA 48 (60)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555544444333
No 143
>PRK14164 heat shock protein GrpE; Provisional
Probab=25.42 E-value=4.2e+02 Score=22.48 Aligned_cols=15 Identities=7% Similarity=0.078 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 027780 18 TLDKLNETLEMLEKK 32 (219)
Q Consensus 18 ~i~~Lr~~~~~L~kk 32 (219)
.+..|+..+..+..+
T Consensus 78 ~~~~le~el~el~d~ 92 (218)
T PRK14164 78 EASTVEAQLAERTED 92 (218)
T ss_pred hHHHHHHHHHHHHHH
Confidence 355555555544444
No 144
>PRK13988 cell division topological specificity factor MinE; Provisional
Probab=25.08 E-value=42 Score=24.85 Aligned_cols=9 Identities=33% Similarity=1.017 Sum_probs=6.0
Q ss_pred CcccccCCC
Q 027780 1 MFTRLFGKP 9 (219)
Q Consensus 1 m~~~lFGk~ 9 (219)
+|.+|||++
T Consensus 6 ~l~~lf~~k 14 (97)
T PRK13988 6 LLEKLFGRQ 14 (97)
T ss_pred HHHHHhcCC
Confidence 367788753
No 145
>PRK14145 heat shock protein GrpE; Provisional
Probab=24.86 E-value=4.1e+02 Score=22.16 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027780 18 TLDKLNETLEMLEKKEKVLLK 38 (219)
Q Consensus 18 ~i~~Lr~~~~~L~kki~~Le~ 38 (219)
.+..|+..+..+++++..+..
T Consensus 46 e~~~l~~~l~~le~e~~el~d 66 (196)
T PRK14145 46 EIEELKQKLQQKEVEAQEYLD 66 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355556555555555554443
No 146
>PF10115 HlyU: Transcriptional activator HlyU; InterPro: IPR018772 This is a family of hypothetical prokaryotic proteins, with no known function. One of the proteins in this entry corresponds to the transcriptional activator HlyU, indicating a possible similar role in other members.
Probab=24.83 E-value=26 Score=25.67 Aligned_cols=11 Identities=55% Similarity=1.041 Sum_probs=7.7
Q ss_pred CcccccCCCCC
Q 027780 1 MFTRLFGKPKQ 11 (219)
Q Consensus 1 m~~~lFGk~~~ 11 (219)
+|++|||.+++
T Consensus 3 ~~s~LFGg~~~ 13 (91)
T PF10115_consen 3 FFSRLFGGGKK 13 (91)
T ss_pred HHHHhhCCCCC
Confidence 47889986543
No 147
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=24.43 E-value=2.3e+02 Score=19.16 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027780 28 MLEKKEKVLLKKASVEV 44 (219)
Q Consensus 28 ~L~kki~~Le~~i~~~~ 44 (219)
.|+.||..|+..|++..
T Consensus 29 El~eRIalLq~EIeRlk 45 (65)
T COG5509 29 ELEERIALLQAEIERLK 45 (65)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555554443
No 148
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.00 E-value=4.6e+02 Score=22.39 Aligned_cols=75 Identities=9% Similarity=0.140 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 18 TLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAK 94 (219)
Q Consensus 18 ~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~a~ 94 (219)
+|..+|.....|++--..|-..+....... .++ .-.+..--.++.-|..+...|-++..-.++|+.++.+.++..
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L-~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er 76 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLENEE-KCL-EEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESER 76 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888887776655554433332 222 112233345666677777777777776666666655554433
No 149
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.83 E-value=7.5e+02 Score=24.80 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027780 21 KLNETLEMLEKKEKVLLKKA 40 (219)
Q Consensus 21 ~Lr~~~~~L~kki~~Le~~i 40 (219)
.+|.+...|+..+..|..++
T Consensus 542 ~~r~r~~~lE~E~~~lr~el 561 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRREL 561 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554443
No 150
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=23.66 E-value=6.8e+02 Score=24.30 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLK 64 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk 64 (219)
.....|..|....+.|.+++-.|.. .-+-+++.+..+.+..|-.|.|
T Consensus 615 ~ar~qIh~Le~~Reelsk~V~DLts----saQgakKAVhdaK~ElA~~Y~k 661 (790)
T PF07794_consen 615 TARNQIHRLEQRREELSKRVMDLTS----SAQGAKKAVHDAKVELAAAYSK 661 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777766632 2234566777777776655443
No 151
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.66 E-value=3.6e+02 Score=21.08 Aligned_cols=64 Identities=22% Similarity=0.227 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 18 TLDKLNETLEMLEKKEKVLLKKASVEVEKAK---DYSKAKNKR--AAIQCLKRKRLYEQQIEQLGNFQL 81 (219)
Q Consensus 18 ~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak---~~~~~~~k~--~A~~~Lk~KK~~e~~l~~~~~~~~ 81 (219)
....+...|..|.+++..|+.+++....... ..+-.+.+. .+-.+=|+-..+|..+++....+.
T Consensus 29 ~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~ 97 (143)
T PF12718_consen 29 ENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLK 97 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455566666777777777666665544433 333222221 222344444567776666655443
No 152
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=23.55 E-value=2.6e+02 Score=21.82 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 17 TTLDKLNETLEMLEKKEKVLLKKASVE 43 (219)
Q Consensus 17 ~~i~~Lr~~~~~L~kki~~Le~~i~~~ 43 (219)
-.+..+++-+..++.-+..|+.++..-
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~~~K 106 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAELRAK 106 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336677777777777777776655443
No 153
>PRK12765 flagellar capping protein; Provisional
Probab=23.41 E-value=4.7e+02 Score=25.57 Aligned_cols=22 Identities=18% Similarity=0.056 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027780 23 NETLEMLEKKEKVLLKKASVEV 44 (219)
Q Consensus 23 r~~~~~L~kki~~Le~~i~~~~ 44 (219)
....+.|+++++.|.++++...
T Consensus 531 ~~~~~~l~~~~~~l~~~~~~~~ 552 (595)
T PRK12765 531 TKYDESLTNEIKSLTTSKESTQ 552 (595)
T ss_pred hhhhhhHHHHHHHHHHHHHHHH
Confidence 3344455555555555444443
No 154
>COG5453 Uncharacterized conserved protein [Function unknown]
Probab=23.40 E-value=28 Score=25.42 Aligned_cols=10 Identities=50% Similarity=0.992 Sum_probs=7.9
Q ss_pred CcccccCCCC
Q 027780 1 MFTRLFGKPK 10 (219)
Q Consensus 1 m~~~lFGk~~ 10 (219)
+|++|||++.
T Consensus 3 ffsrlFG~g~ 12 (96)
T COG5453 3 FFSRLFGGGS 12 (96)
T ss_pred HHHHhhCCCC
Confidence 5889999765
No 155
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=23.06 E-value=2.8e+02 Score=19.96 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVE 43 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~ 43 (219)
.....+..|+..++.|+.++..+..++...
T Consensus 67 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 96 (104)
T PF13600_consen 67 SDSPELKELEEELEALEDELAALQDEIQAL 96 (104)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578888888888888877776555433
No 156
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=22.84 E-value=3.7e+02 Score=23.20 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q 027780 101 DALRTGASTMKAMQK-ATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELE 166 (219)
Q Consensus 101 ~amk~~~~alk~~~~-~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~ 166 (219)
-||-.|-+..++..+ +++.+++..+++.+.++ ..|+.+++.... .+.+.+++||-.|.
T Consensus 131 PaL~~A~ki~~raa~~Gfdw~~~~~~~~k~~EE---~~El~~a~~~~~-----~~~~~ieeElGDlL 189 (248)
T TIGR00444 131 PALMRAAKIQKRCAKVGFDWEDVSPVWDKVYEE---LDEVMYEARQAV-----VEQNKLEEEMGDLL 189 (248)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH---HHHHHHHHhccc-----cchHHHHHHHHHHH
Confidence 355566666666655 68888888888888776 456666665431 23456777776665
No 157
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=22.66 E-value=1e+03 Score=25.91 Aligned_cols=19 Identities=5% Similarity=-0.150 Sum_probs=10.9
Q ss_pred HhhcHHHHHHHHHHHHHHH
Q 027780 52 KAKNKRAAIQCLKRKRLYE 70 (219)
Q Consensus 52 ~~~~k~~A~~~Lk~KK~~e 70 (219)
..|+..+|-+++..-+...
T Consensus 1537 T~~di~ra~~L~s~A~~a~ 1555 (1758)
T KOG0994|consen 1537 TKGDIARAENLQSEAERAR 1555 (1758)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3466777777665444333
No 158
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=22.55 E-value=3.6e+02 Score=20.72 Aligned_cols=88 Identities=13% Similarity=0.128 Sum_probs=48.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Q 027780 45 EKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDK 124 (219)
Q Consensus 45 ~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~ 124 (219)
...+..+...|...|...|...-.++....++......+..+. ..+..--.-+..+...++++.
T Consensus 33 ~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~-------------~~~~~k~~~~~~l~~~~s~~~--- 96 (150)
T PF07200_consen 33 QQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELE-------------SEYQEKEQQQDELSSNYSPDA--- 96 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHCHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHccCCHHH---
Confidence 3445556677888888877777666665555543333322222 222222334555555565554
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Q 027780 125 TMDEINEQTENMKQIQEALSTPIG 148 (219)
Q Consensus 125 ~mde~~e~~e~~~eI~e~l~~~~~ 148 (219)
+..-++.....+++-++.|...+-
T Consensus 97 l~~~L~~~~~e~eeeSe~lae~fl 120 (150)
T PF07200_consen 97 LLARLQAAASEAEEESEELAEEFL 120 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-S-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555677888889999999987653
No 159
>PRK14141 heat shock protein GrpE; Provisional
Probab=22.23 E-value=4.8e+02 Score=21.98 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 027780 25 TLEMLEKKE 33 (219)
Q Consensus 25 ~~~~L~kki 33 (219)
.+..|++++
T Consensus 39 ~i~~le~e~ 47 (209)
T PRK14141 39 PLEALKAEN 47 (209)
T ss_pred HHHHHHHHH
Confidence 333333333
No 160
>PRK07737 fliD flagellar capping protein; Validated
Probab=22.07 E-value=5.1e+02 Score=24.64 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 027780 26 LEMLEKKEKVL 36 (219)
Q Consensus 26 ~~~L~kki~~L 36 (219)
++.|+++|..+
T Consensus 450 i~~l~~~i~~~ 460 (501)
T PRK07737 450 LNQIETQIDRF 460 (501)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 161
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.03 E-value=2.9e+02 Score=19.37 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 18 TLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYS 51 (219)
Q Consensus 18 ~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~ 51 (219)
.+.+++.+++.+.+-++.++.+++....++...+
T Consensus 20 ~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll 53 (90)
T PF06103_consen 20 VLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLL 53 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3566677777777777766666666555555554
No 162
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=21.83 E-value=6.3e+02 Score=23.18 Aligned_cols=27 Identities=41% Similarity=0.431 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKA 40 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i 40 (219)
.....+..+...+..+++++..|..++
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~~l 265 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEEKL 265 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777776665544
No 163
>PF10654 DUF2481: Protein of unknown function (DUF2481) ; InterPro: IPR018916 This entry is represented by Bacteriophage A500, Gp59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.54 E-value=1.9e+02 Score=22.20 Aligned_cols=44 Identities=27% Similarity=0.372 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHH-HHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 027780 127 DEINEQTENMKQ-IQEALSTPIGAAADFDEDELEAELEELEGAELEEQ 173 (219)
Q Consensus 127 de~~e~~e~~~e-I~e~l~~~~~~~~~~DedELe~EL~~L~~e~lde~ 173 (219)
.++.+..+.+.+ |+.+....+.. -+=-+|..||+.|+.+.-+++
T Consensus 3 me~t~NKerQreIIsyl~n~dl~~---~~~k~LqkeLn~Lm~~nTEeK 47 (126)
T PF10654_consen 3 MEITENKERQREIISYLVNNDLSF---SKRKELQKELNQLMNENTEEK 47 (126)
T ss_pred hhhhhhHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHHhcchHHH
Confidence 466777788887 55666665532 234789999999998765553
No 164
>PLN02943 aminoacyl-tRNA ligase
Probab=21.37 E-value=4e+02 Score=27.65 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 20 DKLNETLEMLEKKEKVLLKKASVE 43 (219)
Q Consensus 20 ~~Lr~~~~~L~kki~~Le~~i~~~ 43 (219)
..+...+..|+|++..++++|+..
T Consensus 885 iD~~~E~~rL~K~l~klekei~~~ 908 (958)
T PLN02943 885 VDISAEVERLSKRLSKMQTEYDAL 908 (958)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556655555544443
No 165
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.31 E-value=2.6e+02 Score=18.62 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027780 22 LNETLEMLEKKEKVLLKKASVEV 44 (219)
Q Consensus 22 Lr~~~~~L~kki~~Le~~i~~~~ 44 (219)
+...+..|++++..+++.|+...
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~ 24 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLE 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888777776665544
No 166
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=21.13 E-value=7.6e+02 Score=23.87 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 27 EMLEKKEKVLLKKASVEVEKAKDYS 51 (219)
Q Consensus 27 ~~L~kki~~Le~~i~~~~~~ak~~~ 51 (219)
.-+..||..|-.++.....++.-+.
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f~ 440 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHFY 440 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888877777776664
No 167
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.12 E-value=6e+02 Score=22.68 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=14.9
Q ss_pred cccCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 027780 4 RLFGKPKQETNALTTLDKLNETLEMLEKKEKVL 36 (219)
Q Consensus 4 ~lFGk~~~~~~~~~~i~~Lr~~~~~L~kki~~L 36 (219)
+|||..++ ........|...-..+.+.++.|
T Consensus 111 ~~l~~~~~--k~e~~k~~Ld~~~~~~~~~~~~l 141 (300)
T KOG2629|consen 111 RFLGESKD--KLEADKRQLDDQFDKAAKSLNAL 141 (300)
T ss_pred HhhCccch--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 47886544 23333444444444444544444
No 168
>PRK07857 hypothetical protein; Provisional
Probab=21.01 E-value=3.7e+02 Score=20.20 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 13 TNALTTLDKLNETLEMLEKKEKVLL 37 (219)
Q Consensus 13 ~~~~~~i~~Lr~~~~~L~kki~~Le 37 (219)
|.....+..+|.+|+.|++++-.|-
T Consensus 24 p~~~~~L~~lR~eID~ID~eIl~LL 48 (106)
T PRK07857 24 PLSDAEIDELREEIDRLDAEILALV 48 (106)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHH
Confidence 4566779999999999999987764
No 169
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=20.67 E-value=8e+02 Score=23.95 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 20 DKLNETLEMLEKKEKVLLKKASVEVEKAKDY--SKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIM 89 (219)
Q Consensus 20 ~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~--~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ 89 (219)
.+++..+..++++|..|+.++.......-.. ...+.......+.+....++..++.++..-..+...+..
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~ 630 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQ 630 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666665444332110 011122245555566666666777776666665554433
No 170
>PRK08724 fliD flagellar capping protein; Validated
Probab=20.63 E-value=7.3e+02 Score=24.83 Aligned_cols=8 Identities=13% Similarity=0.056 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 027780 81 LRIHDQMI 88 (219)
Q Consensus 81 ~~le~~~~ 88 (219)
..|+.++.
T Consensus 652 tAMD~~ms 659 (673)
T PRK08724 652 AAMQDATG 659 (673)
T ss_pred HHHHHHHH
Confidence 33333333
No 171
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.39 E-value=1.7e+02 Score=23.29 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 64 KRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALR 104 (219)
Q Consensus 64 k~KK~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk 104 (219)
.....|+.+++.+..++..|...+..+.++..+.+.+....
T Consensus 13 a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~ 53 (145)
T COG1730 13 AQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAG 53 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456677777777777777777777776666655555544
No 172
>PLN02943 aminoacyl-tRNA ligase
Probab=20.37 E-value=3.5e+02 Score=28.08 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcHHH
Q 027780 15 ALTTLDKLNETLEMLEKKEKVLLKKASVEV--EKAKDYSKAKNKRA 58 (219)
Q Consensus 15 ~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~--~~ak~~~~~~~k~~ 58 (219)
...-+.+|...+..+++++..+++++.... .+|-..+....+.+
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~k 932 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREK 932 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHH
Confidence 455678888889999999988888887543 45555554444433
No 173
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=20.02 E-value=8.5e+02 Score=24.02 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Q 027780 94 KATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENM 136 (219)
Q Consensus 94 ~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~ 136 (219)
+.|.++.+++..--.+-+.+.+.++ ++..-++++.+.++.-
T Consensus 181 ne~~elt~~lq~Eq~~~keL~~kl~--~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 181 NENMELTSALQSEQHVKKELQKKLG--ELQEKLHNLKEKLELK 221 (617)
T ss_pred HhhhHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhh
Confidence 4456667777777777777766544 5666666666655433
Done!