Query 027780
Match_columns 219
No_of_seqs 173 out of 909
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 01:52:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gd5_A Charged multivesicular 99.9 8.7E-24 3E-28 172.5 6.6 164 4-173 1-168 (179)
2 3um3_B Charged multivesicular 99.9 6.6E-21 2.3E-25 141.6 12.7 101 115-217 1-101 (104)
3 3frt_A Charged multivesicular 99.9 9.2E-22 3.1E-26 164.6 9.0 204 13-218 10-214 (218)
4 4abm_A Charged multivesicular 99.7 1E-17 3.5E-22 118.8 10.9 78 13-91 2-79 (79)
5 2luh_B Vacuolar protein-sortin 99.2 5.9E-12 2E-16 83.0 1.4 54 117-170 1-56 (59)
6 2lxm_B Charged multivesicular 98.6 1.2E-08 4.1E-13 67.0 1.6 37 133-170 1-37 (57)
7 2gd5_A Charged multivesicular 97.8 6.7E-06 2.3E-10 66.4 1.8 152 21-177 11-168 (179)
8 3frt_A Charged multivesicular 97.7 4.4E-05 1.5E-09 63.5 6.2 155 14-178 18-177 (218)
9 3uly_B Charged multivesicular 96.9 0.0012 4E-08 44.8 4.7 44 146-190 2-48 (69)
10 3htu_B Vacuolar protein-sortin 86.9 1.4 4.9E-05 26.3 4.7 33 13-45 5-37 (39)
11 2xze_Q Charged multivesicular 75.7 0.51 1.8E-05 28.4 -0.2 16 203-218 21-36 (40)
12 3ghg_A Fibrinogen alpha chain; 69.1 54 0.0019 30.3 11.4 11 19-29 66-76 (562)
13 2dfs_A Myosin-5A; myosin-V, in 67.7 1E+02 0.0036 30.8 14.2 24 21-44 918-941 (1080)
14 1oxz_A ADP-ribosylation factor 64.6 14 0.00048 29.4 6.0 61 99-165 77-143 (186)
15 2pnv_A Small conductance calci 63.0 19 0.00066 21.7 5.0 32 15-46 7-38 (43)
16 1naf_A ADP-ribosylation factor 59.2 11 0.00038 29.3 4.3 61 99-165 61-127 (158)
17 1deq_A Fibrinogen (alpha chain 56.2 20 0.00068 31.7 5.9 59 19-82 136-194 (390)
18 3frr_A Uncharacterized protein 51.5 47 0.0016 26.4 7.0 52 3-61 1-56 (191)
19 1wrd_A TOM1, target of MYB pro 51.2 16 0.00056 26.1 3.9 35 123-164 42-77 (103)
20 2yy0_A C-MYC-binding protein; 51.1 23 0.00077 22.3 4.1 26 19-44 21-46 (53)
21 3uo3_A J-type CO-chaperone JAC 50.3 88 0.003 24.4 9.5 41 36-76 130-170 (181)
22 3um3_B Charged multivesicular 49.0 39 0.0014 24.2 5.6 87 123-215 13-102 (104)
23 3hho_A CO-chaperone protein HS 42.7 1.1E+02 0.0039 23.4 10.7 42 37-78 126-167 (174)
24 2lw1_A ABC transporter ATP-bin 42.5 78 0.0027 21.6 9.0 64 21-84 19-83 (89)
25 2lch_A Protein OR38; structura 39.6 95 0.0033 21.7 7.5 65 68-132 7-71 (113)
26 1fpo_A HSC20, chaperone protei 39.0 1.3E+02 0.0044 23.1 9.2 41 37-77 122-162 (171)
27 2zqm_A Prefoldin beta subunit 38.2 88 0.003 21.9 6.2 35 14-48 67-101 (117)
28 1i6z_A BAG-family molecular ch 38.1 1.2E+02 0.0043 22.7 7.0 19 5-24 7-25 (135)
29 1aq5_A Matrilin-1, CMP, cartil 38.1 61 0.0021 19.9 4.4 27 14-40 20-46 (47)
30 3kyj_A CHEA3, putative histidi 37.1 1.3E+02 0.0044 22.4 8.6 67 68-134 12-78 (144)
31 1o3x_A ADP-ribosylation factor 37.0 11 0.00037 28.7 1.0 59 100-164 53-117 (140)
32 2l5g_B Putative uncharacterize 36.9 68 0.0023 19.2 5.5 29 15-43 7-35 (42)
33 4ani_A Protein GRPE; chaperone 36.4 87 0.003 25.3 6.4 18 19-36 61-78 (213)
34 2v71_A Nuclear distribution pr 35.7 1.6E+02 0.0056 23.3 12.9 27 19-45 26-52 (189)
35 1fxk_A Prefoldin; archaeal pro 34.8 1.1E+02 0.0038 21.0 6.2 36 14-49 62-97 (107)
36 3bvo_A CO-chaperone protein HS 31.5 1.9E+02 0.0066 22.8 8.5 41 37-77 161-201 (207)
37 2ke4_A CDC42-interacting prote 30.0 1.4E+02 0.0049 20.9 8.7 29 14-42 12-40 (98)
38 3vmx_A Voltage-gated hydrogen 29.4 1E+02 0.0035 19.0 6.6 27 15-41 2-28 (48)
39 4abm_A Charged multivesicular 28.3 1.4E+02 0.0047 20.1 9.5 70 22-96 4-77 (79)
40 1q0v_A Hydrophilic protein; ha 28.0 46 0.0016 22.9 2.9 10 203-212 51-60 (81)
41 2lp4_A Chemotaxis protein CHEA 27.3 2.3E+02 0.0079 22.4 11.3 55 69-123 9-63 (225)
42 1tqg_A Chemotaxis protein CHEA 27.2 1.5E+02 0.0051 20.2 8.0 65 68-132 6-70 (105)
43 2ld6_A Chemotaxis protein CHEA 26.7 1.9E+02 0.0064 21.1 7.3 66 68-133 5-70 (139)
44 2inr_A DNA topoisomerase 4 sub 26.4 3.3E+02 0.011 24.9 9.2 30 116-145 450-479 (514)
45 2lf0_A Uncharacterized protein 26.0 1.6E+02 0.0054 21.7 5.6 51 31-81 10-60 (123)
46 2dq0_A Seryl-tRNA synthetase; 25.9 3.5E+02 0.012 24.0 9.5 34 16-49 30-63 (455)
47 1j1v_A Chromosomal replication 24.8 52 0.0018 22.8 2.8 35 3-38 53-90 (94)
48 1gmj_A ATPase inhibitor; coile 24.0 1.8E+02 0.0061 20.0 6.0 6 18-23 41-46 (84)
49 1i5n_A Chemotaxis protein CHEA 23.7 1.6E+02 0.0054 21.7 5.6 57 70-126 10-66 (146)
50 1dkg_A Nucleotide exchange fac 22.1 2.9E+02 0.0099 21.7 8.2 7 138-144 129-135 (197)
51 2olt_A Hypothetical protein; s 21.7 2.9E+02 0.0098 21.5 17.5 26 28-53 50-75 (227)
52 2kjg_A Archaeal protein SSO690 20.9 79 0.0027 22.1 3.0 62 110-173 12-73 (99)
53 1wle_A Seryl-tRNA synthetase; 20.8 4.7E+02 0.016 23.6 11.7 26 17-42 70-95 (501)
54 1fxk_C Protein (prefoldin); ar 20.7 2.4E+02 0.0082 20.2 6.6 34 14-47 85-118 (133)
No 1
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=99.89 E-value=8.7e-24 Score=172.46 Aligned_cols=164 Identities=17% Similarity=0.214 Sum_probs=124.3
Q ss_pred cccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH----HHHHHHHHHHHHHHHHHHHHHH
Q 027780 4 RLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKR----AAIQCLKRKRLYEQQIEQLGNF 79 (219)
Q Consensus 4 ~lFGk~~~~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~----~A~~~Lk~KK~~e~~l~~~~~~ 79 (219)
++|++++|++.+..++..|+.+++.|++++..|++.-......+|++.+.|++. .|+.++|.||. ..+++..
T Consensus 1 ~~~~~~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~----~~~l~~~ 76 (179)
T 2gd5_A 1 GAMAEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKA----VSKLYAS 76 (179)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 468888888899999999999999999999999988888888889999888865 67778888865 5568888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 027780 80 QLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELE 159 (219)
Q Consensus 80 ~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe 159 (219)
..+|+.+.+.++++.++..|+++|+.++++|+.+|+.||+++|..+|++|.++++++++|+++|+++++. ..|+++.+
T Consensus 77 ~a~l~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~--~~~~~~~e 154 (179)
T 2gd5_A 77 KAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFES--MDDQEEME 154 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccCCCcH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864 33555666
Q ss_pred HHHHHHHHHHHHHh
Q 027780 160 AELEELEGAELEEQ 173 (219)
Q Consensus 160 ~EL~~L~~e~lde~ 173 (219)
+|.+++.+.++++.
T Consensus 155 ee~d~~v~kVl~E~ 168 (179)
T 2gd5_A 155 EEAEMEIDRILFEI 168 (179)
T ss_dssp --CTTHHHHTTCCC
T ss_pred HHHHHHHHHHHHHh
Confidence 77777766666654
No 2
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=99.85 E-value=6.6e-21 Score=141.63 Aligned_cols=101 Identities=36% Similarity=0.566 Sum_probs=87.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 027780 115 KATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVQVPAGRQQ 194 (219)
Q Consensus 115 ~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~lde~~~~~~~~~p~~~~~~p~~~~~ 194 (219)
++|+||+|+++||++++++++++||+++|+++++.+.++|++||++||++|+++.++++++.+....|...|+||++.+|
T Consensus 1 ~~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~~lp 80 (104)
T 3um3_B 1 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIALP 80 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCcCC
Confidence 36899999999999999999999999999999876678999999999999999999999998765555667889988888
Q ss_pred CCCCCCcCCCchHHHHHHHHHHh
Q 027780 195 ARPVPQKQRTAEEDELAALQAEM 217 (219)
Q Consensus 195 ~~~~~~~~~~~ee~el~~L~~~~ 217 (219)
+.|.++ ..++|+++++|+++-
T Consensus 81 ~~p~~~--~~~edde~~~L~~wa 101 (104)
T 3um3_B 81 SKPAKK--KEEEDDDMKELENWA 101 (104)
T ss_pred CCcccC--CccchHHHHHHHHHH
Confidence 776433 345678899999875
No 3
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=99.85 E-value=9.2e-22 Score=164.57 Aligned_cols=204 Identities=19% Similarity=0.213 Sum_probs=125.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 13 TNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEG 92 (219)
Q Consensus 13 ~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~ 92 (219)
..++.+-..||.+.+.|++.+..|++.-......+|++++.|+...|+.+.|.-.+..++..+++....+|..+.+++++
T Consensus 10 e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt 89 (218)
T 3frt_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 89 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999988877888889999999998877777766666667777899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 027780 93 AKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEE 172 (219)
Q Consensus 93 a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~lde 172 (219)
+.++..|.++|+.++++|+.+|+.|++++|..+|++|..+++.++-++++|.+.++. ..|+++.++|-+.+.+.++++
T Consensus 90 ~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~--~~~~~~~eee~d~~v~kVldE 167 (218)
T 3frt_A 90 QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFES--MDDQEEMEEEAEMEIDRILFE 167 (218)
T ss_dssp HHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC------------------CTTSTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc--ccccCCchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998764 234455667777788888887
Q ss_pred hhcCCCCCCCCCC-CCCCCCCCCCCCCCCcCCCchHHHHHHHHHHhc
Q 027780 173 QLLQPATTAPAAP-VQVPAGRQQARPVPQKQRTAEEDELAALQAEMA 218 (219)
Q Consensus 173 ~~~~~~~~~p~~~-~~~p~~~~~~~~~~~~~~~~ee~el~~L~~~~~ 218 (219)
...+....+|+++ +.+|....+..++....++++++.|.+++++|+
T Consensus 168 i~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~m~~rl~ 214 (218)
T 3frt_A 168 ITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLA 214 (218)
T ss_dssp C----------------------------------------------
T ss_pred HhHhHhhcCCCCCCCCCCCccccccccccccchhhHHHHHHHHHHHH
Confidence 6544433445432 224432111111000112445667888998875
No 4
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=118.81 Aligned_cols=78 Identities=41% Similarity=0.479 Sum_probs=75.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 13 TNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLE 91 (219)
Q Consensus 13 ~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie 91 (219)
|++..+|.+|++++++|++++.+|+.+|+.+...||+++ .+||..|+.|||+||+||++|++++++++||++++++||
T Consensus 2 p~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 2 AMEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999999998 889999999999999999999999999999999999885
No 5
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=99.16 E-value=5.9e-12 Score=83.04 Aligned_cols=54 Identities=30% Similarity=0.472 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCCHHHHHHHHHHHHHHHH
Q 027780 117 TNIDDVDKTMDEINEQTENMKQIQEALSTPIGAA--ADFDEDELEAELEELEGAEL 170 (219)
Q Consensus 117 ~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~--~~~DedELe~EL~~L~~e~l 170 (219)
+|||+|++++|+|.+.++.++||+++|+++++.+ +++|+++|++||++|..+.+
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de~~ 56 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQEDF 56 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcccc
Confidence 5899999999999999999999999999998876 47999999999999987754
No 6
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=98.59 E-value=1.2e-08 Score=66.98 Aligned_cols=37 Identities=46% Similarity=0.686 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 027780 133 TENMKQIQEALSTPIGAAADFDEDELEAELEELEGAEL 170 (219)
Q Consensus 133 ~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~l 170 (219)
++.++||+++|+++++.+ ++||+||++||++|+++.+
T Consensus 1 ~e~a~EIqealsr~~g~~-diDEdEL~aELe~LeqE~~ 37 (57)
T 2lxm_B 1 MEDANEINEALSRSYGTP-ELDEDDLEAELDALGDELL 37 (57)
T ss_dssp ---------------CCC-CCCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHcCCCCCC-CCCHHHHHHHHHHHHHHHh
Confidence 467899999999999876 8999999999999998875
No 7
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=97.77 E-value=6.7e-06 Score=66.35 Aligned_cols=152 Identities=12% Similarity=0.079 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 21 KLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQ-CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTET 99 (219)
Q Consensus 21 ~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~-~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v 99 (219)
.+|.....|.+.+..|++.+..+...-++. ...=|..|+. -...-|.|=+++-+.-.+..++.....+|++.......
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~-~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt 89 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKV-KRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 89 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777888777777666555444433 1222333332 12223455566667777777777777777777777666
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHH--HHHHHH---HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 027780 100 VDALRTGASTMKAMQKATNIDDVDKTM--DEINEQ---TENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQL 174 (219)
Q Consensus 100 ~~amk~~~~alk~~~~~~~id~Ve~~m--de~~e~---~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~lde~~ 174 (219)
+.++...+.+|+...+.| ..+...| ++++.. .+..-+..++++..++. .+|+..-.++.++-..++++..+
T Consensus 90 ~~~~~~v~~am~~~~~~M--~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d--~~~~~~~~~~~eee~d~~v~kVl 165 (179)
T 2gd5_A 90 QLAVLRVAGSLQKSTEVM--KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLED--TFESMDDQEEMEEEAEMEIDRIL 165 (179)
T ss_dssp HHHHHHHTSSCCCCSHHH--HTTTSSTTSSSCCHHHHHHHHHHHHHTSCC---------------------CTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcccCCCcHHHHHHHHHHHH
Confidence 655555555555444332 3333333 233333 23444444455665542 45544323444444444555555
Q ss_pred cCC
Q 027780 175 LQP 177 (219)
Q Consensus 175 ~~~ 177 (219)
.++
T Consensus 166 ~E~ 168 (179)
T 2gd5_A 166 FEI 168 (179)
T ss_dssp CCC
T ss_pred HHh
Confidence 544
No 8
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=97.74 E-value=4.4e-05 Score=63.49 Aligned_cols=155 Identities=11% Similarity=0.151 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIE---QLGNFQLRIHDQMIML 90 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~---~~~~~~~~le~~~~~i 90 (219)
..+.++..|...+..|++....+..+|... ||+.-..+-|..|+.++|.||...+.+. ++.+....|.++....
T Consensus 18 ~Lr~~~R~LdR~~~kle~eEkk~~~~IKka---akkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~ 94 (218)
T 3frt_A 18 KIRKEMRVVDRQIRDIQREEEKVKRSVKDA---AKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777766777655554444332 3443345667888888888876666443 5566666666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHH
Q 027780 91 EGAKATTETVDALRTGASTM--KAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGA 168 (219)
Q Consensus 91 e~a~~n~~v~~amk~~~~al--k~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e 168 (219)
.-+.+-..+..+|+..+..| ..+.+.| ++++.=+.. .=-..+.++++|....+. +.+++|.+++.+....+
T Consensus 95 ~v~~sM~~st~~M~~~n~~m~l~~i~~tM--~efekE~~k---~~i~eEmm~Da~d~~~~~--~~~eee~d~~v~kVldE 167 (218)
T 3frt_A 95 RVAGSLQKSTEVMKAMQSLVKIPEIQATM--RELSKEMMK---AGIIEEMLEDTFESMDDQ--EEMEEEAEMEIDRILFE 167 (218)
T ss_dssp ----CCCCCHHHHHHHHHSTTSHHHHHHH--HHHHHHHHH---HSCC------------------CTTSTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHHHHH---hhhHHHHHHHHHhccccc--CCchHHHHHHHHHHHHH
Confidence 55555566677777777666 4444432 333333333 111223456666554432 23455666777777666
Q ss_pred HHHHhhcCCC
Q 027780 169 ELEEQLLQPA 178 (219)
Q Consensus 169 ~lde~~~~~~ 178 (219)
.....+...+
T Consensus 168 i~~~~l~~~p 177 (218)
T 3frt_A 168 ITAGALGKAP 177 (218)
T ss_dssp C---------
T ss_pred HhHhHhhcCC
Confidence 6655555443
No 9
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=96.93 E-value=0.0012 Score=44.76 Aligned_cols=44 Identities=43% Similarity=0.698 Sum_probs=29.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHH---hhcCCCCCCCCCCCCCCC
Q 027780 146 PIGAAADFDEDELEAELEELEGAELEE---QLLQPATTAPAAPVQVPA 190 (219)
Q Consensus 146 ~~~~~~~~DedELe~EL~~L~~e~lde---~~~~~~~~~p~~~~~~p~ 190 (219)
+++.+ ++||+||++||+.|..+..-+ .++....++|+.|..+|+
T Consensus 2 sy~~p-diDE~eL~aELdaL~~e~~~~~~pSyL~~~~~~P~~p~~~p~ 48 (69)
T 3uly_B 2 SYGTP-ELDEDDLEAELDALGDELLADEDSSYLDEAASAPAIPEGVPT 48 (69)
T ss_pred CCCCC-CCCHHHHHHHHHHHHHHHhcccCcchhhccccCCCCCCCCCC
Confidence 45555 799999999999998775422 344444445666555553
No 10
>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=86.85 E-value=1.4 Score=26.26 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 13 TNALTTLDKLNETLEMLEKKEKVLLKKASVEVE 45 (219)
Q Consensus 13 ~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~ 45 (219)
+..+++|..|+.+.+.|.+....++..++.+.+
T Consensus 5 T~qDrAIL~LK~QRDkL~qyqkri~~~~~rE~e 37 (39)
T 3htu_B 5 TEQDKAILQLKQQRDKLRQYQKRIAQQLERERA 37 (39)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 567999999999999999998888777776543
No 11
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=75.74 E-value=0.51 Score=28.38 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=12.6
Q ss_pred CCchHHHHHHHHHHhc
Q 027780 203 RTAEEDELAALQAEMA 218 (219)
Q Consensus 203 ~~~ee~el~~L~~~~~ 218 (219)
++++|+++.++|.||+
T Consensus 21 ~edeEedi~~MqsRLa 36 (40)
T 2xze_Q 21 EEEEEEALEAMQSRLA 36 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHH
Confidence 3456678999999986
No 12
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=69.13 E-value=54 Score=30.25 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 027780 19 LDKLNETLEML 29 (219)
Q Consensus 19 i~~Lr~~~~~L 29 (219)
|.+||..++.|
T Consensus 66 INELKnqLEdl 76 (562)
T 3ghg_A 66 INKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=67.67 E-value=1e+02 Score=30.81 Aligned_cols=24 Identities=21% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 21 KLNETLEMLEKKEKVLLKKASVEV 44 (219)
Q Consensus 21 ~Lr~~~~~L~kki~~Le~~i~~~~ 44 (219)
.++.....|+.++..|+.+++...
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~e 941 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQN 941 (1080)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555554433
No 14
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=64.60 E-value=14 Score=29.44 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhccCCHH---HH--HHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCCHHHHHHHHHHH
Q 027780 99 TVDALRTGASTMKAMQKATNID---DV--DKTMDEINEQTENMKQ-IQEALSTPIGAAADFDEDELEAELEEL 165 (219)
Q Consensus 99 v~~amk~~~~alk~~~~~~~id---~V--e~~mde~~e~~e~~~e-I~e~l~~~~~~~~~~DedELe~EL~~L 165 (219)
-++-.+...+.|..|...++.. .. .+++.++-.....+.- |..+++.. .|++++..|+=.+
T Consensus 77 eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~------~ddee~L~elL~~ 143 (186)
T 1oxz_A 77 AIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDT------EDNDEALAEILQA 143 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHC------CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHc------cCCHHHHHHHHHh
Confidence 3444455555566655544221 11 4788888888776666 88888753 2446666665443
No 15
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=63.00 E-value=19 Score=21.71 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 15 ALTTLDKLNETLEMLEKKEKVLLKKASVEVEK 46 (219)
Q Consensus 15 ~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ 46 (219)
+-+-+..+..+-+.|++||..|+.|++.....
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44557788999999999999999998876543
No 16
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=59.15 E-value=11 Score=29.26 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHH-----HHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCCHHHHHHHHHHH
Q 027780 99 TVDALRTGASTMKAMQKATNIDDV-----DKTMDEINEQTENMKQ-IQEALSTPIGAAADFDEDELEAELEEL 165 (219)
Q Consensus 99 v~~amk~~~~alk~~~~~~~id~V-----e~~mde~~e~~e~~~e-I~e~l~~~~~~~~~~DedELe~EL~~L 165 (219)
-++-.+...+.|..|...++..+- .+++.++-.....+.- |..+++.. .|++++..|+=.+
T Consensus 61 eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~------~ddee~L~elL~~ 127 (158)
T 1naf_A 61 AIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDT------EDNDEALAEILQA 127 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHHC------CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHc------cCCHHHHHHHHHh
Confidence 344445556666666655433211 2688888888776665 88888753 2446666665443
No 17
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=56.19 E-value=20 Score=31.74 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 19 LDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLR 82 (219)
Q Consensus 19 i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~ 82 (219)
|..|+..++.+-.+|..||..|+-|..-++..+. .++.+=--++.|++|+.++......
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~-----~~l~~~vD~e~ye~qqKQL~qv~a~ 194 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCS-----RALEHKVDLEDYKNQQKQLEQVIAI 194 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-----hhhhhhccHHHHHHHHHHHHhhhhh
No 18
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=51.54 E-value=47 Score=26.40 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=22.4
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhcHHHHHH
Q 027780 3 TRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVE----KAKDYSKAKNKRAAIQ 61 (219)
Q Consensus 3 ~~lFGk~~~~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~----~ak~~~~~~~k~~A~~ 61 (219)
|+|||++-... +++..+...-.|+..++++-..... .+-++++.|+-..|+.
T Consensus 1 ~~mf~~~~~~~-------K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~Ari 56 (191)
T 3frr_A 1 GHMLGSGFKAE-------RLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARI 56 (191)
T ss_dssp ---CCCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcccCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 46788753323 3333333333444444333222222 2334567777666653
No 19
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=51.16 E-value=16 Score=26.05 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCCHHHHHHHHHH
Q 027780 123 DKTMDEINEQTENMKQ-IQEALSTPIGAAADFDEDELEAELEE 164 (219)
Q Consensus 123 e~~mde~~e~~e~~~e-I~e~l~~~~~~~~~~DedELe~EL~~ 164 (219)
++++.++-+....+.- |..+++. .|++++..++=.
T Consensus 42 ~el~~eL~~~c~~~qp~i~~li~~-------~~dee~l~~lL~ 77 (103)
T 1wrd_A 42 LELLQELNRTCRAMQQRVLELIPQ-------IANEQLTEELLI 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-------cCCHHHHHHHHH
Confidence 4677777777766555 7777763 134556555533
No 20
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.12 E-value=23 Score=22.28 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 19 LDKLNETLEMLEKKEKVLLKKASVEV 44 (219)
Q Consensus 19 i~~Lr~~~~~L~kki~~Le~~i~~~~ 44 (219)
+..|+.....|..++..|..+++...
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777766555544
No 21
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=50.26 E-value=88 Score=24.35 Aligned_cols=41 Identities=7% Similarity=0.004 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q 027780 36 LLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQL 76 (219)
Q Consensus 36 Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~ 76 (219)
+..+|..+......++..++-..|..++++-+++.+..+.+
T Consensus 130 ~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~~i 170 (181)
T 3uo3_A 130 NKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAF 170 (181)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777778889999999999999998855543
No 22
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=48.95 E-value=39 Score=24.23 Aligned_cols=87 Identities=23% Similarity=0.218 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH--HHHHHHHHHhhcCCCCCCCCCCC-CCCCCCCCCCCCC
Q 027780 123 DKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELE--ELEGAELEEQLLQPATTAPAAPV-QVPAGRQQARPVP 199 (219)
Q Consensus 123 e~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~--~L~~e~lde~~~~~~~~~p~~~~-~~p~~~~~~~~~~ 199 (219)
+++-+.+..+.+.++-|+.-++.+....++.=+.||+ +|+ .|..+.++-.-... ..+|.+|. .+|+.+ ..+..
T Consensus 13 Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe-~Le~e~l~~~~l~~~~~~~-~~LP~vP~~~lp~~p--~~~~~ 88 (104)
T 3um3_B 13 QDIADQQELAEEISTAISKPVGFGEEFDEDELMAELE-ELEQEELDKNLLEISGPET-VPLPNVPSIALPSKP--AKKKE 88 (104)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH-HHHHHHHHHHhhccCCCCC-CCCCCCCCCcCCCCc--ccCCc
Confidence 4455555566666667777775332211121134544 332 34444443221111 12344443 355322 22222
Q ss_pred CcCCCchHHHHHHHHH
Q 027780 200 QKQRTAEEDELAALQA 215 (219)
Q Consensus 200 ~~~~~~ee~el~~L~~ 215 (219)
. ++++..+|++-.+
T Consensus 89 ~--edde~~~L~~wa~ 102 (104)
T 3um3_B 89 E--EDDDMKELENWAG 102 (104)
T ss_pred c--chHHHHHHHHHHh
Confidence 2 4678888887544
No 23
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=42.74 E-value=1.1e+02 Score=23.44 Aligned_cols=42 Identities=5% Similarity=0.008 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 37 LKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGN 78 (219)
Q Consensus 37 e~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~ 78 (219)
..++..+.......+..++...|..++++-+++.+-...+..
T Consensus 126 ~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~~~i~~ 167 (174)
T 3hho_A 126 TAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVER 167 (174)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666667777888999999999999999886655544
No 24
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=42.50 E-value=78 Score=21.55 Aligned_cols=64 Identities=20% Similarity=0.077 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 21 KLNETLEMLEKKEKVLLKKASVEVEKAKDY-SKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIH 84 (219)
Q Consensus 21 ~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~-~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le 84 (219)
+.+..++.|..+|..|+.+|.......-.. +-..+......++.+...++..|+.++..-.-|+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777766665554332110 1123555666777777788887777766555443
No 25
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=39.59 E-value=95 Score=21.69 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 027780 68 LYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQ 132 (219)
Q Consensus 68 ~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~ 132 (219)
.++..++.....+..|+..+..++....+...++++..+..++|-.-..+++..|.++--.+.+.
T Consensus 7 l~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~ 71 (113)
T 2lch_A 7 YIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNL 71 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHH
Confidence 44556666777777888888888776667788888888888999888888888887776555443
No 26
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=39.05 E-value=1.3e+02 Score=23.05 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 027780 37 LKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLG 77 (219)
Q Consensus 37 e~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~ 77 (219)
..++..+.......+..++...|..++++-+++.+-.+.+.
T Consensus 122 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y~~kl~~~i~ 162 (171)
T 1fpo_A 122 KKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAE 162 (171)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666677778899999999999998887555443
No 27
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=38.17 E-value=88 Score=21.89 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAK 48 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak 48 (219)
+...++..|...++.++..++.|++++........
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~ 101 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLK 101 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777766655544433
No 28
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=38.14 E-value=1.2e+02 Score=22.67 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=8.5
Q ss_pred ccCCCCCCccHHHHHHHHHH
Q 027780 5 LFGKPKQETNALTTLDKLNE 24 (219)
Q Consensus 5 lFGk~~~~~~~~~~i~~Lr~ 24 (219)
+.|++.+ |..+..+..|+.
T Consensus 7 viGkK~~-peee~~lKkL~d 25 (135)
T 1i6z_A 7 LIGEKSN-PEEEVELKKLKD 25 (135)
T ss_dssp SSCCCCC-HHHHHHHHHHHH
T ss_pred EeCCCCC-hHHHHHHHHHHH
Confidence 4576533 333444444443
No 29
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=38.13 E-value=61 Score=19.90 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKA 40 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i 40 (219)
.+...|..|...+..+.+|+..|+++|
T Consensus 20 ~v~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 20 KVEELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556677888888888888888777654
No 30
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=37.07 E-value=1.3e+02 Score=22.41 Aligned_cols=67 Identities=9% Similarity=0.133 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 027780 68 LYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTE 134 (219)
Q Consensus 68 ~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e 134 (219)
+++-.++.....+..++..+..++..-.+.+.++++-.+..++|-.-+-+.++.|.++--.+.+..+
T Consensus 12 ll~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~ 78 (144)
T 3kyj_A 12 IWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIG 78 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHH
Confidence 4555667777777888888888887767788888998888999988888888877777666655443
No 31
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=36.99 E-value=11 Score=28.68 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhccCCH---HHH--HHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCCHHHHHHHHHH
Q 027780 100 VDALRTGASTMKAMQKATNI---DDV--DKTMDEINEQTENMKQ-IQEALSTPIGAAADFDEDELEAELEE 164 (219)
Q Consensus 100 ~~amk~~~~alk~~~~~~~i---d~V--e~~mde~~e~~e~~~e-I~e~l~~~~~~~~~~DedELe~EL~~ 164 (219)
++..+...+.|..|...++. ... .+++.++-.....+.- |..+++.. .|++++..|+=.
T Consensus 53 Le~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e~------~ddee~l~elL~ 117 (140)
T 1o3x_A 53 IEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDT------EDNDEALAEILQ 117 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHc------cCCHHHHHHHHH
Confidence 33344444555555443322 111 3688888877766665 77877753 244556555543
No 32
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.87 E-value=68 Score=19.18 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 15 ALTTLDKLNETLEMLEKKEKVLLKKASVE 43 (219)
Q Consensus 15 ~~~~i~~Lr~~~~~L~kki~~Le~~i~~~ 43 (219)
....|.++...|..-+++|..|+++...+
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554444433
No 33
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=36.40 E-value=87 Score=25.31 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027780 19 LDKLNETLEMLEKKEKVL 36 (219)
Q Consensus 19 i~~Lr~~~~~L~kki~~L 36 (219)
+..+...+..|+.++..+
T Consensus 61 ~~~l~~~l~~l~~e~~el 78 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEM 78 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554444
No 34
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=35.68 E-value=1.6e+02 Score=23.26 Aligned_cols=27 Identities=7% Similarity=0.168 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 19 LDKLNETLEMLEKKEKVLLKKASVEVE 45 (219)
Q Consensus 19 i~~Lr~~~~~L~kki~~Le~~i~~~~~ 45 (219)
+..++.....+..-...|+..++.++.
T Consensus 26 ~~~le~El~EFqesSrELE~ELE~eL~ 52 (189)
T 2v71_A 26 FQEARDELVEFQEGSRELEAELEAQLV 52 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 35
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=34.80 E-value=1.1e+02 Score=21.02 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKD 49 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~ 49 (219)
+...++..|....+.++..|+.|++++........+
T Consensus 62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~ 97 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQE 97 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888888877777766555544433
No 36
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=31.46 E-value=1.9e+02 Score=22.84 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 027780 37 LKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLG 77 (219)
Q Consensus 37 e~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~ 77 (219)
..+++.........+..|+-..|...+++.|++.+-.+.+.
T Consensus 161 ~~~~~~~~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~~~i~ 201 (207)
T 3bvo_A 161 KAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIK 201 (207)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666778899999999999999987665544
No 37
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=30.03 E-value=1.4e+02 Score=20.90 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASV 42 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~ 42 (219)
++..-..+|...+..|++.|..-.+..+.
T Consensus 12 PpeqRkkkL~~Ki~el~~ei~ke~~~reg 40 (98)
T 2ke4_A 12 PPEQQRKRLQQQLEERSRELQKEVDQREA 40 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666544443333
No 38
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=29.41 E-value=1e+02 Score=18.96 Aligned_cols=27 Identities=19% Similarity=0.047 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 15 ALTTLDKLNETLEMLEKKEKVLLKKAS 41 (219)
Q Consensus 15 ~~~~i~~Lr~~~~~L~kki~~Le~~i~ 41 (219)
....|.+|++.-..|-.++..|+....
T Consensus 2 aeq~l~kLKe~n~~L~~kv~~Le~~c~ 28 (48)
T 3vmx_A 2 SERQILRLKQINIQLATKIQHLEFSCS 28 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 356789999999999999999875443
No 39
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=28.29 E-value=1.4e+02 Score=20.11 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 22 LNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKR----LYEQQIEQLGNFQLRIHDQMIMLEGAKAT 96 (219)
Q Consensus 22 Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK----~~e~~l~~~~~~~~~le~~~~~ie~a~~n 96 (219)
.+..|-.|..+++.|+++......++-. ....|+.++...| .+=+..-.+.+++.++..++++||....+
T Consensus 4 ~~~AI~~Lr~~~d~L~kkq~~L~~~i~~-----e~~~Ak~~~~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~ 77 (79)
T 4abm_A 4 EQEAIQRLRDTEEMLSKKQEFLEKKIEQ-----ELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667888888888887766665544432 3346666664222 22233445677888888888888876543
No 40
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=28.03 E-value=46 Score=22.87 Aligned_cols=10 Identities=30% Similarity=0.488 Sum_probs=6.3
Q ss_pred CCchHHHHHH
Q 027780 203 RTAEEDELAA 212 (219)
Q Consensus 203 ~~~ee~el~~ 212 (219)
.++||++|++
T Consensus 51 ~edeD~DLKA 60 (81)
T 1q0v_A 51 EEEEDPDLKA 60 (81)
T ss_dssp CCCSCHHHHH
T ss_pred CcccCHHHHH
Confidence 4566777764
No 41
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=27.28 E-value=2.3e+02 Score=22.38 Aligned_cols=55 Identities=11% Similarity=0.207 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q 027780 69 YEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVD 123 (219)
Q Consensus 69 ~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve 123 (219)
++-.++.....+.+++..+..++..-.+.+.++++-.+..++|---+-++++.|.
T Consensus 9 l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~ 63 (225)
T 2lp4_A 9 YQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQ 63 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHH
Confidence 4445555555666666666666655555666666666666666655555544443
No 42
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=27.19 E-value=1.5e+02 Score=20.17 Aligned_cols=65 Identities=12% Similarity=0.219 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 027780 68 LYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQ 132 (219)
Q Consensus 68 ~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~ 132 (219)
.++..++.....+..|+..+..++....+...+.++..+..+||-.-..+....+..+--.+.+.
T Consensus 6 l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~ 70 (105)
T 1tqg_A 6 YLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENI 70 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHH
Confidence 44555666666677777777777766556777888888888888888888888887766655543
No 43
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=26.73 E-value=1.9e+02 Score=21.10 Aligned_cols=66 Identities=12% Similarity=0.209 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 027780 68 LYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQT 133 (219)
Q Consensus 68 ~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~ 133 (219)
+++..++.....+..|+..+..++....+...++++..+.-+||-.-..+.+..|..+--.+.+..
T Consensus 5 ll~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l 70 (139)
T 2ld6_A 5 YLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENIL 70 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHH
Confidence 344556666666777777777777665567778888888889999888888888887766665543
No 44
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=26.41 E-value=3.3e+02 Score=24.90 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027780 116 ATNIDDVDKTMDEINEQTENMKQIQEALST 145 (219)
Q Consensus 116 ~~~id~Ve~~mde~~e~~e~~~eI~e~l~~ 145 (219)
.+.-.+++++..+..+......+...+|+.
T Consensus 450 rLT~~e~~kl~~E~~~l~~ei~~l~~iL~~ 479 (514)
T 2inr_A 450 RLTNTDIVALEGEHKELEALIKQLRHILDN 479 (514)
T ss_dssp GGSTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455567777777777777777777777765
No 45
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=26.00 E-value=1.6e+02 Score=21.65 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 31 KKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQL 81 (219)
Q Consensus 31 kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~ 81 (219)
..|..|..+++.+..+--.....|+...-..+.+.+-.+.+.+.++-+.+.
T Consensus 10 ~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~ 60 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHS 60 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555554433334567777777777777777777776655443
No 46
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=25.90 E-value=3.5e+02 Score=24.04 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 16 LTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKD 49 (219)
Q Consensus 16 ~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~ 49 (219)
...|..|....+.+..+++.|..+.....+.+.+
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777776555444444433
No 47
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=24.79 E-value=52 Score=22.81 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=18.4
Q ss_pred ccccCCCCCCccHHHHHHHHHHHH---HHHHHHHHHHHH
Q 027780 3 TRLFGKPKQETNALTTLDKLNETL---EMLEKKEKVLLK 38 (219)
Q Consensus 3 ~~lFGk~~~~~~~~~~i~~Lr~~~---~~L~kki~~Le~ 38 (219)
++.||+.+. .++--++.++...+ ..+...++.|.+
T Consensus 53 G~~fggrdH-sTV~ha~~ki~~~~~~d~~~~~~i~~l~~ 90 (94)
T 1j1v_A 53 GDAFGGRDH-TTVLHACRKIEQLREESHDIKEDFSNLIR 90 (94)
T ss_dssp HHHTTSCCH-HHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHhCCCCH-HHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 578976543 34555555555443 344455544443
No 48
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.99 E-value=1.8e+02 Score=19.98 Aligned_cols=6 Identities=33% Similarity=0.451 Sum_probs=2.6
Q ss_pred HHHHHH
Q 027780 18 TLDKLN 23 (219)
Q Consensus 18 ~i~~Lr 23 (219)
.+.+||
T Consensus 41 qL~~LK 46 (84)
T 1gmj_A 41 QLAALK 46 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344444
No 49
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=23.72 E-value=1.6e+02 Score=21.73 Aligned_cols=57 Identities=11% Similarity=0.172 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Q 027780 70 EQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTM 126 (219)
Q Consensus 70 e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~m 126 (219)
+-.++.....+..|+..+..++....+...++.+..+..+||-.-..+.++.|.++-
T Consensus 10 ~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~la 66 (146)
T 1i5n_A 10 QTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETT 66 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHH
Confidence 334444444455555555444433333444555555555555555555544443333
No 50
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=22.11 E-value=2.9e+02 Score=21.71 Aligned_cols=7 Identities=0% Similarity=0.264 Sum_probs=3.2
Q ss_pred HHHHHhc
Q 027780 138 QIQEALS 144 (219)
Q Consensus 138 eI~e~l~ 144 (219)
.+..+|.
T Consensus 129 ~l~~~L~ 135 (197)
T 1dkg_A 129 SMLDVVR 135 (197)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 3444554
No 51
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=21.73 E-value=2.9e+02 Score=21.51 Aligned_cols=26 Identities=8% Similarity=-0.019 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027780 28 MLEKKEKVLLKKASVEVEKAKDYSKA 53 (219)
Q Consensus 28 ~L~kki~~Le~~i~~~~~~ak~~~~~ 53 (219)
.+-+++..+|.+++.....+..++..
T Consensus 50 ~~~~~i~~~E~~aD~l~~~I~~~L~~ 75 (227)
T 2olt_A 50 QIRKQISLAEKQGDSLKREIRLTLPS 75 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34456666666666666666666543
No 52
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=20.88 E-value=79 Score=22.10 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=40.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 027780 110 MKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQ 173 (219)
Q Consensus 110 lk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~lde~ 173 (219)
|++..+.+|.+.|+.+++++.++.-.++-|-..+=-.+.. -+|+--=-.++=.|....++.=
T Consensus 12 LrkfKgkvd~~~v~~IL~eiE~~~rksnni~tS~If~Yan--h~~~V~knk~fy~li~~IlekY 73 (99)
T 2kjg_A 12 LRQFKGKVNFNLVMQILDEIELDLRGSDNIKTSIIYVYSS--HLDEIRKNKEFYDMIAEILQRY 73 (99)
T ss_dssp HHHHTCCSCHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH--THHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHhcCCchhhHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHh
Confidence 6777788999999999999999988877665544222221 2333333455666666666553
No 53
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.77 E-value=4.7e+02 Score=23.64 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 17 TTLDKLNETLEMLEKKEKVLLKKASV 42 (219)
Q Consensus 17 ~~i~~Lr~~~~~L~kki~~Le~~i~~ 42 (219)
..|..|....+.+..+.+.|+.+...
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~ 95 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEA 95 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555443333
No 54
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.67 E-value=2.4e+02 Score=20.19 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKA 47 (219)
Q Consensus 14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~a 47 (219)
+.+.++.-++..++.++++++.+++.+......+
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i 118 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIM 118 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888777766655444333
Done!