RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 027781
(219 letters)
>gnl|CDD|215256 PLN02462, PLN02462, sedoheptulose-1,7-bisphosphatase.
Length = 304
Score = 430 bits (1107), Expect = e-154
Identities = 187/208 (89%), Positives = 198/208 (95%)
Query: 1 MMCMGEALRTIAFKVRTASCVGTACVNSFGDEQLAVDMLADKLLFEALTYSHFCKYACSE 60
+MCMGEA RTIAFKVRTASC GTACVNSFGDEQLAVDMLADKLLFEAL YSH CKYACSE
Sbjct: 19 IMCMGEACRTIAFKVRTASCTGTACVNSFGDEQLAVDMLADKLLFEALKYSHVCKYACSE 78
Query: 61 EVPELQDMGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVTGRDQVAAAM 120
EVPE+QDMGGP EGGFSVAFDPLDGSSIVDTNF VGTIFGVWPGDKLTGVTGRDQVAAAM
Sbjct: 79 EVPEVQDMGGPVEGGFSVAFDPLDGSSIVDTNFAVGTIFGVWPGDKLTGVTGRDQVAAAM 138
Query: 121 GIYGPRTTYVIAIKDFPGTHEFLLLDEGKWQHVKETTEIGEGKMFSPGNLRATFDNPDYD 180
GIYGPRTTYV+A+KD PGTHEFLLLD+GKWQHVKETTEIGEGK+FSPGNLRATFDNP Y+
Sbjct: 139 GIYGPRTTYVVALKDGPGTHEFLLLDDGKWQHVKETTEIGEGKIFSPGNLRATFDNPGYE 198
Query: 181 KLINYYVKQKYTLRYTGGMVPDVNQVLI 208
KLINYYV +KYTLRYTGGMVPDV Q+++
Sbjct: 199 KLINYYVSEKYTLRYTGGMVPDVYQIIV 226
>gnl|CDD|215854 pfam00316, FBPase, Fructose-1-6-bisphosphatase.
Length = 325
Score = 276 bits (709), Expect = 7e-94
Identities = 88/227 (38%), Positives = 117/227 (51%), Gaps = 21/227 (9%)
Query: 1 MMCMGEALRTIAFKVRTAS----CVGTACVNSFGDEQLAVDMLADKLLFEALTYSHFCKY 56
+ + A + IA +R A G N GDEQ +D+LAD L AL S
Sbjct: 24 LSSLALAAKFIARAIRRAGLANLLGGAGGTNVQGDEQKKLDVLADDLFRAALKASGAVAV 83
Query: 57 ACSEEVPELQDMGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWP---GDKLTGV--- 110
SEE EL + G EG ++VAFDPLDGSS +DTN +VGTIF ++P GD T +
Sbjct: 84 LASEEQDELVVLEGNEEGKYAVAFDPLDGSSNIDTNVSVGTIFSIYPRVSGDSPTTIDFL 143
Query: 111 -TGRDQVAAAMGIYGPRTTYVIAIKDFPGTHEFLL-LDEGKWQHVKETTEI-GEGKMFSP 167
GR+QVAA IYGP T V+ + G H F L D G++ V ET +I EGK+FS
Sbjct: 144 QPGREQVAAGYVIYGPSTMLVLTLGC--GVHGFTLDPDLGEFILVDETVKIPEEGKIFSI 201
Query: 168 GNLRATFDNPDYDKLINYYVK------QKYTLRYTGGMVPDVNQVLI 208
+P K I+ + Y +RY G MV DV+++L+
Sbjct: 202 NEGNYRHWDPPVRKYIDDCKAGDDGPRRPYNMRYIGSMVADVHRILL 248
>gnl|CDD|238214 cd00354, FBPase, Fructose-1,6-bisphosphatase, an enzyme that
catalyzes the hydrolysis of fructose-1,6-biphosphate
into fructose-6-phosphate and is critical in
gluconeogenesis pathway. The alignment model also
includes chloroplastic FBPases and
sedoheptulose-1,7-biphosphatases that play a role in
pentose phosphate pathway (Calvin cycle).
Length = 315
Score = 237 bits (606), Expect = 3e-78
Identities = 74/223 (33%), Positives = 104/223 (46%), Gaps = 18/223 (8%)
Query: 1 MMCMGEALRTIAFKVRTASCVGTACVNSFGDEQLAVDMLADKLLFEALTYSHFCKYACSE 60
+ E R + VN GDEQ +D+LA+ + EAL S SE
Sbjct: 22 ALACKEISRAVRRAGLAGLLGLAGSVNVQGDEQKKLDVLANDIFIEALKSSGVVAVLASE 81
Query: 61 EVPELQDMGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVT-------GR 113
E E + +G + VAFDPLDGSS +D N +VGTIF ++PG T GR
Sbjct: 82 EEEEPVPVEESKDGKYLVAFDPLDGSSNIDANVSVGTIFSIYPGPSGADATEKDFLQPGR 141
Query: 114 DQVAAAMGIYGPRTTYVIAIKDFPGTHEFLLLDE-GKWQHVKET-TEIGEGKMFSP--GN 169
+QVAA +YGP T V+ + G H F L G++ +GK++S GN
Sbjct: 142 NQVAAGYALYGPSTMLVLTLG--QGVHGFTLDPSLGEFILTHPNVKIPKKGKIYSINEGN 199
Query: 170 LRATFDNPDYDKLINYYV----KQKYTLRYTGGMVPDVNQVLI 208
R +D P + + + Y LRY G MV DV+++L+
Sbjct: 200 YRY-WDEPVKKYIDDCKAGEDGGKPYNLRYIGSMVADVHRILV 241
>gnl|CDD|236458 PRK09293, PRK09293, fructose-1,6-bisphosphatase; Provisional.
Length = 327
Score = 141 bits (358), Expect = 6e-41
Identities = 68/217 (31%), Positives = 97/217 (44%), Gaps = 23/217 (10%)
Query: 11 IAFKVRTASCVG----TACVNSFGDEQLAVDMLADKLLFEALTYS-HFCKYACSEEVPEL 65
I+ + N G+ Q +D+ A+++L EAL H A SEE E+
Sbjct: 37 ISRAINKGGLADILGAAGTENVQGETQKKLDVFANEILIEALKARGHVAGLA-SEEEDEI 95
Query: 66 QDMGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVT------GRDQVAAA 119
+ EG + VA+DPLDGSS +D N +VGTIF ++ T G +QVAA
Sbjct: 96 VPIPE-NEGKYLVAYDPLDGSSNIDVNVSVGTIFSIYRAPVGTPTEEDFLQPGNNQVAAG 154
Query: 120 MGIYGPRTTYVIAIKDFPGTHEFLLLDE-GKWQHVKETTEIGE-GKMFSPGNLRATFDNP 177
+YGP T V+ D G H F L G++ E I E GK ++ P
Sbjct: 155 YVLYGPSTMLVLTTGD--GVHGFTLDPSLGEFVLTHENIRIPEDGKEYAINEGNQRHWEP 212
Query: 178 DYDKLINYYVKQK------YTLRYTGGMVPDVNQVLI 208
K I + Y +RY G MV DV+++L+
Sbjct: 213 GVKKYIELLAGKDGPRGRPYNMRYIGSMVADVHRILL 249
>gnl|CDD|223236 COG0158, Fbp, Fructose-1,6-bisphosphatase [Carbohydrate transport
and metabolism].
Length = 326
Score = 123 bits (312), Expect = 3e-34
Identities = 69/222 (31%), Positives = 103/222 (46%), Gaps = 23/222 (10%)
Query: 6 EALRTIAFKVRTASCVG----TACVNSFGDEQLAVDMLADKLLFEALTYSHFCKYACSEE 61
A + IA ++ A G + N GD Q +D+ A+++L EAL SEE
Sbjct: 31 LAGKEIAREINKAGLAGVLGYSGAENVQGDTQKKLDVFANEILIEALKARGNVAGIASEE 90
Query: 62 VPELQDMGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGV------TGRDQ 115
E G ++VA+DPLDGSS +D N +VGTIF ++ G G Q
Sbjct: 91 EDEPV-TFPENNGSYAVAYDPLDGSSNIDVNVSVGTIFSIYRRPGSPGTEEDFLQPGNKQ 149
Query: 116 VAAAMGIYGPRTTYVIAIKDFPGTHEFLLLDE-GKWQHVKETTEIGE-GKMFS--PGNLR 171
VAA +YGP T V + + G H F L G++ E I E GK+++ GN R
Sbjct: 150 VAAGYVVYGPSTMLVYTLGE--GVHGFTLDPSLGEFILTHENIRIPEKGKIYAINEGNQR 207
Query: 172 ATFDNP-----DYDKLINYYVKQKYTLRYTGGMVPDVNQVLI 208
++ + ++ Y +RY G MV DV+++L+
Sbjct: 208 -HWEEGVKKYIKDCFAEDKGTRRPYNMRYIGSMVADVHRILL 248
>gnl|CDD|215147 PLN02262, PLN02262, fructose-1,6-bisphosphatase.
Length = 340
Score = 71.8 bits (176), Expect = 6e-15
Identities = 63/202 (31%), Positives = 93/202 (46%), Gaps = 28/202 (13%)
Query: 27 NSFGDEQLAVDMLADKLLFEALTYSHFCKYACSEEVPELQDMGGPAEGGFSVAFDPLDGS 86
N G+EQ +D+L++ + +AL S SEE E + G + V FDPLDGS
Sbjct: 67 NVQGEEQKKLDVLSNDVFIKALVSSGRTNVLVSEEDEEAIFVEPSKRGRYCVVFDPLDGS 126
Query: 87 SIVDTNFTVGTIFGVWPGDKLTGVT-------GRDQVAAAMGIYGPRTTYVIAIKDFPGT 139
S +D ++GTIFG++ T G++ VAA +YG T V++ G
Sbjct: 127 SNIDCGVSIGTIFGIYMLKDGGEGTVEDVLQPGKEMVAAGYCMYGSSCTLVLSTGG--GV 184
Query: 140 HEFLL---LDEGKWQHVKETTEIGEGKMFS--PGNLRATFDNPDYDKLINYYVKQKY--- 191
+ F L L E H +GK++S GN + +D P Y K K+
Sbjct: 185 NGFTLDPSLGEFILTHPDIKIP-KKGKIYSVNEGNAK-NWDGP----TAKYVEKCKFPKD 238
Query: 192 -----TLRYTGGMVPDVNQVLI 208
+LRY G MV DV++ L+
Sbjct: 239 GSSPKSLRYIGSMVADVHRTLL 260
>gnl|CDD|215337 PLN02628, PLN02628, fructose-1,6-bisphosphatase family protein.
Length = 351
Score = 49.8 bits (119), Expect = 2e-07
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 29/160 (18%)
Query: 73 EGGFSVAFDPLDGSSIVDTNFTVGTIFGVW---------PGDKLTGV----TGRDQVAAA 119
+G + V FDPLDGS +D + GTIFG++ P ++ + G VAA
Sbjct: 117 DGPYVVVFDPLDGSRNIDASIPTGTIFGIYNRLVEADHLPVEEKAQLNVLQRGSRLVAAG 176
Query: 120 MGIYGPRTTYVIAIKDFPGTHEFLL-LDEGKWQHVKETTEIGE-GKMFS---------PG 168
+Y T I+ GTH F L G++ +I E G+++S P
Sbjct: 177 YVLYSSATILCISFGS--GTHGFTLDHSTGEFVLTHPDIKIPERGQIYSVNDARYFDWPE 234
Query: 169 NLRATFDNPDYDKLINYYVKQKYTLRYTGGMVPDVNQVLI 208
LR D K +KY+ RY +V D+++ ++
Sbjct: 235 GLRKYIDTVRQGKGQY---PKKYSARYICSLVADLHRTIL 271
>gnl|CDD|215298 PLN02542, PLN02542, fructose-1,6-bisphosphatase.
Length = 412
Score = 46.4 bits (110), Expect = 4e-06
Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 54/223 (24%)
Query: 26 VNSFGDEQLAVDMLADKLLFEALTYSHFCKYACSEEVPELQDMGGPAE----GGFSVAFD 81
VN G++Q +D++++++ L S SEE +D+ E G + V FD
Sbjct: 129 VNIQGEDQKKLDVISNEVFSNCLRSSGRTGIIASEE----EDVPVAVEESYSGNYIVVFD 184
Query: 82 PLDGSSIVDTNFTVGTIFGVW-PGDKLTGVTGRDQ--------------------VAAAM 120
PLDGSS +D + G+IFG++ P D+ G D +AA
Sbjct: 185 PLDGSSNIDAAVSTGSIFGIYSPNDECLADIGDDSTLDSVEQRCIVNVCQPGSNLLAAGY 244
Query: 121 GIYGPRTTYVIAIKDFPGTHEFLLLDE--GKWQHVKETTEIGE-GKMFSPGNLRATFDNP 177
+Y +V+ I G F LD G++ +E +I + GK++S F+
Sbjct: 245 CMYSSSVIFVLTIGT--GVFSF-TLDPMYGEFVLTQENIQIPKAGKIYS-------FNEG 294
Query: 178 DY----DKLINYYVKQK--------YTLRYTGGMVPDVNQVLI 208
+Y DKL Y K Y+ RY G +V D ++ L+
Sbjct: 295 NYQLWDDKLKKYIDDLKDPGPSGKPYSARYIGSLVGDFHRTLL 337
>gnl|CDD|223559 COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related
enzymes of inositol monophosphatase family [Carbohydrate
transport and metabolism].
Length = 260
Score = 43.1 bits (102), Expect = 4e-05
Identities = 34/137 (24%), Positives = 46/137 (33%), Gaps = 29/137 (21%)
Query: 1 MMCMGEALRTIAFKV--------RTASCVGTACVNSFGDEQLAVDMLADKLLFEALTYSH 52
MM M A K R V S GD D A++++ L +
Sbjct: 1 MMPMLNIALRAARKAGALILPLFRELDAVEVEVKKSDGDPVTEADKAAERIIRARLR-AA 59
Query: 53 FCKYA-CSEEVPELQDMGGPAEGGFSVAF--DPLDGSSIVDTNFTVG-TIFGVWPGDKLT 108
F + EE GG GG + DP+DG+ TNF G F V
Sbjct: 60 FPDHGILGEE------SGGALGGGDEYVWVIDPIDGT----TNFVRGIPFFAV-----SI 104
Query: 109 GVTGRDQVAAAMGIYGP 125
+ + A + IY P
Sbjct: 105 ALVEDGEPVAGV-IYDP 120
>gnl|CDD|183673 PRK12676, PRK12676, bifunctional inositol-1
monophosphatase/fructose-1,6-bisphosphatase; Reviewed.
Length = 263
Score = 38.3 bits (90), Expect = 0.002
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 6 EALRTIAFKVRTASC--VGTA------CVNSFGDEQLAVDMLADKLLFEALTYSHFCKYA 57
E +A +V A GT + + G +D +A+ ++ E L C
Sbjct: 8 EICDDMAKEVEKAIMPLFGTPDAGETVGMGADGTPTKLIDKVAEDIILEVLKPLGRCVNI 67
Query: 58 CSEEVPELQDMGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIF 99
SEE+ E+ GP ++V DPLDG+ N G F
Sbjct: 68 ISEELGEIVG-NGP---EYTVVLDPLDGTY----NAINGIPF 101
>gnl|CDD|238820 cd01642, Arch_FBPase_2, Putative fructose-1,6-bisphosphatase or
related enzymes of inositol monophosphatase family.
These are Mg++ dependent phosphatases. Members in this
family may have fructose-1,6-bisphosphatase and/or
inositol-monophosphatase activity.
Fructose-1,6-bisphosphatase catalyzes the hydrolysis of
fructose-1,6-biphosphate into fructose-6-phosphate and
is critical in gluconeogenesis pathway.
Length = 244
Score = 32.4 bits (74), Expect = 0.13
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 20 CVGTACVNSFGDEQLAVDMLADKLLFEALTYSHFCKYACSEEVPELQDMGGPAEGGFSVA 79
+ + GD D+ A++++ + L SEE E+ G +
Sbjct: 23 GLVKLIRGAGGDVTRVADLKAEEIILKLLREEGVFGQIISEESGEI----RKGSGEYIAV 78
Query: 80 FDPLDGSSIVDTNFTVG 96
DPLDGS TN+ G
Sbjct: 79 LDPLDGS----TNYLSG 91
>gnl|CDD|238773 cd01515, Arch_FBPase_1, Archaeal fructose-1,6-bisphosphatase and
related enzymes of inositol monophosphatase family
(FBPase class IV). These are Mg++ dependent
phosphatases. Members in this family may have both
fructose-1,6-bisphosphatase and
inositol-monophosphatase activity. In hyperthermophilic
archaea, inositol monophosphatase is thought to play a
role in the biosynthesis of
di-myo-inositol-1,1'-phosphate, an osmolyte unique to
hyperthermophiles.
Length = 257
Score = 30.4 bits (69), Expect = 0.51
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 5 GEALRTIAFKVRTASCVGTACVNSFGDEQLAVDMLADKLLFEALTYSHFCKY-ACSEEVP 63
E + I T + + G +D +A+ E L SEE+
Sbjct: 10 KEIEKAIKPLFGTEDASEVVKIGADGTPTKLIDKVAEDAAIEILK--KLGSVNIVSEEIG 67
Query: 64 ELQDMGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIF 99
+ D G E ++V DPLDG+ N G F
Sbjct: 68 VI-DNGDEPE--YTVVLDPLDGTY----NAINGIPF 96
>gnl|CDD|238814 cd01636, FIG, FIG, FBPase/IMPase/glpX-like domain. A superfamily of
metal-dependent phosphatases with various substrates.
Fructose-1,6-bisphospatase (both the major and the
glpX-encoded variant) hydrolyze
fructose-1,6,-bisphosphate to fructose-6-phosphate in
gluconeogenesis. Inositol-monophosphatases and inositol
polyphosphatases play vital roles in eukaryotic
signalling, as they participate in metabolizing the
messenger molecule Inositol-1,4,5-triphosphate. Many of
these enzymes are inhibited by Li+.
Length = 184
Score = 29.3 bits (66), Expect = 1.3
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 27 NSFGDEQLAVDMLADKLLFEALTYSHFCKYACSEE-VPELQDMGGPAEGGFSVAFDPLDG 85
S D D+ A+ L+ L S EE + MG ++ DP+DG
Sbjct: 31 KSDNDPVTTADVAAETLIRNMLKSSFPDVKIVGEESGVAEEVMGR--RDEYTWVIDPIDG 88
Query: 86 SSIVDTNF-TVGTIFGV 101
+ V + V
Sbjct: 89 TKNFINGLPFVAVVIAV 105
>gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit;
Reviewed.
Length = 572
Score = 28.3 bits (63), Expect = 3.4
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 91 TNFTVGTIFGVWPGDKLTGVTGRD----------QVAAAMGIYGPRTTYVIAIK 134
TN G I W + +TG+ Q A AMG++ T YVI IK
Sbjct: 81 TNLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGVFENVTKYVIGIK 134
>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases.
L-lactate dehydrogenases (LDH) are tetrameric enzymes
catalyzing the last step of glycolysis in which
pyruvate is converted to L-lactate. This subgroup is
composed of eukaryotic LDHs. Vertebrate LDHs are
non-allosteric. This is in contrast to some bacterial
LDHs that are activated by an allosteric effector such
as fructose-1,6-bisphosphate. LDHs are part of the
NAD(P)-binding Rossmann fold superfamily, which
includes a wide variety of protein families including
the NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 312
Score = 28.0 bits (63), Expect = 3.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 21 VGTACVNSFGDEQLA-----VDMLADKLLFEALTYSHF 53
VG AC S + LA VD++ DKL EA+ H
Sbjct: 14 VGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHG 51
>gnl|CDD|236050 PRK07564, PRK07564, phosphoglucomutase; Validated.
Length = 543
Score = 27.8 bits (63), Expect = 4.9
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 60 EEVPELQDMGGPAEGGFSVAFDPLDGSSI 88
E++ + D + G + DPL G++
Sbjct: 211 EDLENVFDFDAIRKAGLRLGVDPLGGATG 239
>gnl|CDD|237437 PRK13582, thrH, phosphoserine phosphatase; Provisional.
Length = 205
Score = 27.6 bits (62), Expect = 4.9
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 9/37 (24%)
Query: 150 WQHVKETTEIGEGKMFSPGNLRATF-DNPDYDKLINY 185
W E T I E LRAT D PDYD L+
Sbjct: 17 WIAFAEKTGIPE--------LRATTRDIPDYDVLMKQ 45
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 27.6 bits (62), Expect = 5.2
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 100 GVWPGDKLTGVT---GRDQVAAAMGIYGPRTTYV 130
GV PGD L V G +Q+ A +GI YV
Sbjct: 33 GVAPGD-LVAVVMPKGWEQIVAVLGILLAGAAYV 65
>gnl|CDD|115718 pfam07082, DUF1350, Protein of unknown function (DUF1350). This
family consists of several hypothetical proteins from
both cyanobacteria and plants. Members of this family
are typically around 250 residues in length. The
function of this family is unknown but the species
distribution indicates that the family may be involved
in photosynthesis.
Length = 250
Score = 27.5 bits (61), Expect = 5.5
Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 30/122 (24%)
Query: 53 FCKYACSEEVPELQDMGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGV-------WPGD 105
F Y + +P + + G SV F P S +TN + + V + D
Sbjct: 123 FNNYPAKQAIPWMDNFGT----ALSVEFTP----SPTETNHLIQERYPVRRNLLIKFQND 174
Query: 106 KLTGVTGRDQVAAAMGIYGPRTTYVIAIKDFPGTHEFLLLDEGKWQHVKETTEIGEGKMF 165
+ DQ A I + ++ PG H L + KWQ G F
Sbjct: 175 DI------DQTARLRSILRAKFGDMVTALKLPGNHLTPLGQDLKWQ---------TGAEF 219
Query: 166 SP 167
SP
Sbjct: 220 SP 221
>gnl|CDD|211351 cd07251, Glo_EDI_BRP_like_10, This conserved domain belongs to a
superfamily including the bleomycin resistance protein,
glyoxalase I, and type I ring-cleaving dioxygenases.
This protein family belongs to a conserved domain
superfamily that is found in a variety of structurally
related metalloproteins, including the bleomycin
resistance protein, glyoxalase I, and type I
ring-cleaving dioxygenases. A bound metal ion is
required for protein activities for the members of this
superfamily. A variety of metal ions have been found in
the catalytic centers of these proteins including
Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein
superfamily contains members with or without domain
swapping.
Length = 120
Score = 26.4 bits (59), Expect = 6.3
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 73 EGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVTGRDQVAAAMG 121
GG+ + D DG + G + ++P ++L G
Sbjct: 18 AGGWKTSADSNDGVAFFQLG---GLVLALFPREELAKDAGVPVPPPGFS 63
>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4,
chlorophyll a/b binding; Provisional.
Length = 244
Score = 26.5 bits (58), Expect = 9.8
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 61 EVPELQDMGGPAEGGFSVAFDPLDGSSIVDTNFTVG 96
E+ QDM P S+ DPL G++ DTN VG
Sbjct: 145 EIRRWQDMKAPG----SMNEDPLFGANKGDTNTDVG 176
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.421
Gapped
Lambda K H
0.267 0.0619 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,322,610
Number of extensions: 1080364
Number of successful extensions: 823
Number of sequences better than 10.0: 1
Number of HSP's gapped: 803
Number of HSP's successfully gapped: 24
Length of query: 219
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 126
Effective length of database: 6,812,680
Effective search space: 858397680
Effective search space used: 858397680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)