RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027781
(219 letters)
>3uks_A Sedoheptulose-1,7 bisphosphatase, putative; structural genomics,
center for structural genomics of infec diseases, csgid;
1.85A {Toxoplasma gondii}
Length = 347
Score = 241 bits (618), Expect = 6e-80
Identities = 85/227 (37%), Positives = 123/227 (54%), Gaps = 21/227 (9%)
Query: 1 MMCMGEALRTIAFKVRTASCVGTACVNSFGDEQLAVDMLADKLLFEALTYSH--FCKYAC 58
++ + + IA ++ S VN FGDEQL VD++A+ LL S + C
Sbjct: 44 ILAILDRCGKIASALQGTSVDKVGSVNEFGDEQLTVDVIAENLLRSWAQSSEGSAVRAVC 103
Query: 59 SEEVPELQDMGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWP----------GDKLT 108
SEE LQ+ G F + +DPLDGSSI+D N+ VG+I +W D L
Sbjct: 104 SEEDIHLQECHK--NGEFILCWDPLDGSSIIDCNWAVGSIVSIWRIGHHGVQWQGADTLI 161
Query: 109 GVTGRDQVAAAMGIYGPRTTYVIAIKDFPG-------THEFLLLDEGKWQHVKETTEIGE 161
TGR QVA+ + +YGPRTT V+A+ G + + D GK+ + +
Sbjct: 162 QKTGRQQVASLIVVYGPRTTGVVAVNVDAGGIVKEGTALDLEMKDNGKFICRGKPIIKPQ 221
Query: 162 GKMFSPGNLRATFDNPDYDKLINYYVKQKYTLRYTGGMVPDVNQVLI 208
K+FSP NLRA D P Y +LI ++++++YTLRYTGG+VPDV Q+ +
Sbjct: 222 AKIFSPANLRAAQDLPAYKQLIEFWMEKRYTLRYTGGLVPDVYQIFV 268
>1nuw_A Fructose-1,6-bisphosphatase; allosteric enzymes, gluconeogenesis,
hydrola; HET: F6P; 1.30A {Sus scrofa} SCOP: e.7.1.1 PDB:
1eyi_A* 1eyj_A* 1cnq_A* 1eyk_A* 1nux_A* 1nuy_A* 1nuz_A*
1nv0_A* 1nv1_A* 1nv2_A* 1nv3_A* 1nv4_A* 1nv5_A* 1nv6_A*
1nv7_A* 1q9d_A* 2qvu_A* 2qvv_A* 1fj6_A* 1fj9_A* ...
Length = 337
Score = 210 bits (536), Expect = 1e-67
Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 20/226 (8%)
Query: 1 MMCMGEALRTIAFKVRTASCVG----TACVNSFGDEQLAVDMLADKLLFEALTYSHFCKY 56
+ + A++ I+ VR A N GD+ +D+L++ L+ L S
Sbjct: 34 LNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVINVLKSSFATCV 93
Query: 57 ACSEEVPELQDMGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVW-------PGDKLTG 109
SEE + G + V FDPLDGSS +D ++GTIFG++ P +K
Sbjct: 94 LVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDAL 153
Query: 110 VTGRDQVAAAMGIYGPRTTYVIAIKDFPGTHEFLL-LDEGKWQHVKETTEIGE-GKMFSP 167
GR+ VAA +YG T V+A+ + G + F+L G++ V +I + G ++S
Sbjct: 154 QPGRNLVAAGYALYGSATMLVLAMVN--GVNCFMLDPAIGEFILVDRDVKIKKKGSIYSI 211
Query: 168 GNLRATFDNPDYDKLINY-----YVKQKYTLRYTGGMVPDVNQVLI 208
A +P + I Y RY G MV DV++ L+
Sbjct: 212 NEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLV 257
>2fhy_A Fructose-1,6-bisphosphatase 1; allosteric inhibitors human fbpase,
benzoxazole, intersubunit allosteric inhibition of human
fpbase, hydrolase; HET: A37; 2.95A {Homo sapiens}
Length = 374
Score = 209 bits (535), Expect = 4e-67
Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 20/226 (8%)
Query: 1 MMCMGEALRTIAFKVRTASCVG----TACVNSFGDEQLAVDMLADKLLFEALTYSHFCKY 56
+ + A++ I+ VR A N GD+ +D+L++ L+ L S
Sbjct: 71 LNSLCTAVKAISSAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVMNMLKSSFATCV 130
Query: 57 ACSEEVPELQDMGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVW-------PGDKLTG 109
SEE + G + V FDPLDGSS +D +VGTIFG++ P +K
Sbjct: 131 LVSEEDKHAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSVGTIFGIYRKKSTDEPSEKDAL 190
Query: 110 VTGRDQVAAAMGIYGPRTTYVIAIKDFPGTHEFLLL-DEGKWQHVKETTEIGE-GKMFSP 167
GR+ VAA +YG T V+A+ G + F+L G++ V + +I + GK++S
Sbjct: 191 QPGRNLVAAGYALYGSATMLVLAMDC--GVNCFMLDPAIGEFILVDKDVKIKKKGKIYSL 248
Query: 168 GNLRATFDNPDYDKLINY-----YVKQKYTLRYTGGMVPDVNQVLI 208
A +P + I Y RY G MV DV++ L+
Sbjct: 249 NEGYAKDFDPAVTEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLV 294
>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox
regulation, thioredoxin, allostery, hydrolase; 2.20A
{Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
Length = 357
Score = 188 bits (479), Expect = 6e-59
Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 37/243 (15%)
Query: 1 MMCMGEALRTIAFKVRTASCVG----TACVNSFGDEQLAVDMLADKLLFEALTYSHFCKY 56
+ + A + IA V+ A+ VN G++Q +D++++++ L S
Sbjct: 42 LSSISMACKQIASLVQRANISNLTGTQGAVNIQGEDQKKLDVISNEVFSNCLRSSGRTGI 101
Query: 57 ACSEEVPELQDMGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVT----- 111
SEE + G + V FDPLDGSS +D + G+IFG++ +
Sbjct: 102 IASEEEDVPVAVEESYSGNYIVVFDPLDGSSNLDAAVSTGSIFGIYSPNDECLPDFGDDS 161
Query: 112 -------------------GRDQVAAAMGIYGPRTTYVIAIKDFPGTHEFLL-LDEGKWQ 151
G + +AA +Y +V+ I G F L G++
Sbjct: 162 DDNTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSVIFVLTIGK--GVFVFTLDPLYGEFV 219
Query: 152 HVKETTEIGE-GKMFSPGNLRATFDNPDYDKLINYYVKQ-----KYTLRYTGGMVPDVNQ 205
+E +I + GK++S + + K I+ + Y+ RY G +V D ++
Sbjct: 220 LTQENLQIPKSGKIYSFNEGNYKLWDENLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHR 279
Query: 206 VLI 208
L+
Sbjct: 280 TLL 282
>2gq1_A Fructose-1,6-bisphosphatase; allosteric activator site, quaternary
conformation, hydrolas; 1.45A {Escherichia coli} PDB:
2owz_A* 2ox3_A* 2q8m_A* 2qvr_A*
Length = 332
Score = 177 bits (452), Expect = 4e-55
Identities = 60/229 (26%), Positives = 86/229 (37%), Gaps = 23/229 (10%)
Query: 1 MMCMGEALRTIAFKVRTASCVG----TACVNSFGDEQLAVDMLADKLLFEALTYSHFCKY 56
+ + + I + A V + N G+ Q +D+ A++ L AL
Sbjct: 26 LSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQKLDLFANEKLKAALKARDIVAG 85
Query: 57 ACSEEVPELQDMGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVT----- 111
SEE E+ G + V DPLDGSS +D N +VGTIF ++ G
Sbjct: 86 IASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVTPVGTPVTEED 145
Query: 112 ----GRDQVAAAMGIYGPRTTYVIAIKDFPGTHEFLL-LDEGKWQHVKETTEIGE-GKMF 165
G QVAA +YG T V G H F G + +E E GK +
Sbjct: 146 FLQPGNKQVAAGYVVYGSSTMLVYTTGC--GVHAFTYDPSLGVFCLCQERMRFPEKGKTY 203
Query: 166 SPGNLRATFDNPDYDKLINY------YVKQKYTLRYTGGMVPDVNQVLI 208
S K I + + YT RY G +V D ++ L+
Sbjct: 204 SINEGNYIKFPNGVKKYIKFCQEEDKSTNRPYTSRYIGSLVADFHRNLL 252
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.29
Identities = 40/255 (15%), Positives = 68/255 (26%), Gaps = 104/255 (40%)
Query: 17 TASCVGTA-CVNSFGDEQLAVDMLADKLLFEALTYSHFCKYACSEEVPE-------LQDM 68
TA + SF + +LF F C E P L+D
Sbjct: 279 TAVAIAETDSWESF--FVSVRKAI--TVLF-------FIGVRCYEAYPNTSLPPSILEDS 327
Query: 69 GGPAEGG----FSV---AFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVTGRDQVAAAMG 121
EG S+ + + + TN + P K QV ++
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQ-DYVNKTNSHL-------PAGK--------QVEISL- 370
Query: 122 IYGPRTTYVIA---------------IKDFPG---------------THEFL-------- 143
+ G + V++ K G ++ FL
Sbjct: 371 VNGAK-NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 144 -LLDEGKWQHVKETTEIGEGKMFSPGNLR----ATFDNPDYDKLINYYVKQKYTLR-YTG 197
LL K+ + F+ +++ TFD D LR +G
Sbjct: 430 HLLVPASDLINKDLVKNNV--SFNAKDIQIPVYDTFDGSD--------------LRVLSG 473
Query: 198 GMVPDVNQVLIVMAV 212
+ + +I + V
Sbjct: 474 SISERIVDCIIRLPV 488
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.53
Identities = 5/32 (15%), Positives = 15/32 (46%), Gaps = 11/32 (34%)
Query: 151 QHVKETTEIGEG--KMFSPGN-----LRATFD 175
Q +K+ + K+++ + ++AT +
Sbjct: 20 QALKKL----QASLKLYADDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 0.56
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 115 QVAAAMGIYGPRTTYVIAIKDFPGTHE 141
++ A++ +Y + +AIK T E
Sbjct: 24 KLQASLKLYADDSAPALAIK---ATME 47
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 29.0 bits (64), Expect = 0.94
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 161 EGKMFSPGNLRATFDNPDYDKLINYYVKQKYTLRY 195
EGK+ P +++ T D+P KL + Y + +
Sbjct: 133 EGKVMKPLHVKGTIDHPVLSKL-KFTKSSAYDMEF 166
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding,
structural genomics; 2.52A {Thermus thermophilus}
Length = 524
Score = 28.4 bits (64), Expect = 1.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 60 EEVPELQDMGGPAEGGFSVAFDPLDGSSI 88
E+V E D+ G + DPL G+S+
Sbjct: 195 EKVAEAVDLEAIRASGLRIGVDPLGGASL 223
>1svp_A Sindbis virus capsid protein; chymotrypsin-like serine, mutant,
coat protein, viral protein; 2.00A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1kxb_A 1kxa_A 2snw_A 1kxc_A 1kxd_A 1kxe_A
2snv_A 1z8y_Q 1wyk_A
Length = 161
Score = 27.0 bits (59), Expect = 3.4
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 161 EGKMFSPGNLRATFDNPDYDKLINYYVKQKYTLRY 195
EGK+ P +++ T D+P KL + Y + +
Sbjct: 28 EGKVMKPLHVKGTIDHPVLSKL-KFTKSSAYDMEF 61
>1ep5_B Capsid protein C, coat protein C; beta barrel, hydrolase; 2.30A
{Venezuelan equine encephalitis virus} SCOP: b.47.1.3
PDB: 1ep6_A 3j0c_C
Length = 157
Score = 27.0 bits (59), Expect = 3.4
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 161 EGKMFSPGNLRATFDNPDYDKLINYYVKQKYTLRY 195
GK+F P ++ DN L KY L Y
Sbjct: 26 GGKLFRPMHVEGKIDNDVLAAL-KTKKASKYDLEY 59
>1vcp_A Semliki forest virus capsid protein; virus coat protein,
polyprotein, transmembrane, glycoprotein, nucleocapsid
protein, viral protein; 3.00A {Semliki forest virus}
SCOP: b.47.1.3 PDB: 1dyl_A 1vcq_A
Length = 149
Score = 27.0 bits (59), Expect = 3.8
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 161 EGKMFSPGNLRATFDNPDYDKLINYYVKQKYTLRY 195
K+ P +++ DN D KL + KY L
Sbjct: 19 GDKVMKPAHVKGVIDNADLAKL-AFKKSSKYDLEC 52
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A
{Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Length = 570
Score = 27.7 bits (62), Expect = 3.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 60 EEVPELQDMGGPAEGGFSVAFDPLDGSSI 88
E + ++ DM + G ++ DPL GS I
Sbjct: 237 EGLADIVDMAAIQKAGLTLGVDPLGGSGI 265
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins,
structural genomics, J center for structural genomics,
JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Length = 454
Score = 26.7 bits (59), Expect = 7.6
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 156 TTEIGEGKMFSPGNLRATFDNPDYDKLINYYVKQKYTLRYTGGMVPDVNQVLI 208
T + E + PG++R + + K + N V++
Sbjct: 280 TQKYAEQMLADPGDVRGHLLEENKYAGKTVWWLYKLRGTDLKTAPLECNNVVL 332
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA
damage repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 26.4 bits (59), Expect = 8.2
Identities = 2/13 (15%), Positives = 9/13 (69%)
Query: 77 SVAFDPLDGSSIV 89
++ +P++G ++
Sbjct: 48 TLDIEPVEGRYML 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.421
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,488,712
Number of extensions: 213012
Number of successful extensions: 459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 19
Length of query: 219
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,188,903
Effective search space: 540368487
Effective search space used: 540368487
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)