RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 027781
         (219 letters)



>d1d9qa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Garden pea (Pisum
           sativum) [TaxId: 3888]}
          Length = 340

 Score =  155 bits (394), Expect = 5e-47
 Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 37/243 (15%)

Query: 1   MMCMGEALRTIAFKVRTASCVG----TACVNSFGDEQLAVDMLADKLLFEALTYSHFCKY 56
           +  +  A + IA  V+ A+          VN  G++Q  +D++++++    L  S     
Sbjct: 25  LSSISMACKQIASLVQRANISNLTGTQGAVNIQGEDQKKLDVISNEVFSNCLRSSGRTGI 84

Query: 57  ACSEEVPELQDMGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVT----- 111
             SEE      +     G + V FDPLDGSS +D   + G+IFG++  +           
Sbjct: 85  IASEEEDVPVAVEESYSGNYIVVFDPLDGSSNLDAAVSTGSIFGIYSPNDECLPDFGDDS 144

Query: 112 -------------------GRDQVAAAMGIYGPRTTYVIAIKDFPGTHEFLL-LDEGKWQ 151
                              G + +AA   +Y     +V+ I    G   F L    G++ 
Sbjct: 145 DDNTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSVIFVLTIGK--GVFVFTLDPLYGEFV 202

Query: 152 HVKETTEIGE-GKMFSPGNLRATFDNPDYDKLINYY-----VKQKYTLRYTGGMVPDVNQ 205
             +E  +I + GK++S         + +  K I+         + Y+ RY G +V D ++
Sbjct: 203 LTQENLQIPKSGKIYSFNEGNYKLWDENLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHR 262

Query: 206 VLI 208
            L+
Sbjct: 263 TLL 265


>d1nuwa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 328

 Score =  155 bits (392), Expect = 8e-47
 Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 22/227 (9%)

Query: 1   MMCMGEALRTIAFKVRTASCVG----TACVNSFGDEQLAVDMLADKLLFEALTYSHFCKY 56
           +  +  A++ I+  VR A            N  GD+   +D+L++ L+   L  S     
Sbjct: 27  LNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVINVLKSSFATCV 86

Query: 57  ACSEEVPELQDMGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVW-------PGDKLTG 109
             SEE      +     G + V FDPLDGSS +D   ++GTIFG++       P +K   
Sbjct: 87  LVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDAL 146

Query: 110 VTGRDQVAAAMGIYGPRTTYVIAIKDFPGTHEFLLLDEGKWQHV---KETTEIGEGKMFS 166
             GR+ VAA   +YG  T  V+A+ +  G + F +LD    + +   ++     +G ++S
Sbjct: 147 QPGRNLVAAGYALYGSATMLVLAMVN--GVNCF-MLDPAIGEFILVDRDVKIKKKGSIYS 203

Query: 167 PGNLRATFDNPDYDKLINY-----YVKQKYTLRYTGGMVPDVNQVLI 208
                A   +P   + I            Y  RY G MV DV++ L+
Sbjct: 204 INEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLV 250


>d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine
           encephalitis virus [TaxId: 11036]}
          Length = 156

 Score = 27.2 bits (60), Expect = 0.94
 Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 161 EGKMFSPGNLRATFDNPDYDKLINYYVKQKYTLRY 195
            GK+F P ++    DN     L       KY L Y
Sbjct: 25  GGKLFRPMHVEGKIDNDVLAAL-KTKKASKYDLEY 58


>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 140

 Score = 26.9 bits (59), Expect = 1.5
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 10/76 (13%)

Query: 123 YGPRTTYVIAIKDFPGTHEFLL--LDEGKWQHVKETTEIGEGKMFS------PGNLRATF 174
            GP+    +  K    + E ++  LD  K+   +        ++F       P ++   +
Sbjct: 24  IGPKRAVDLIQKH--KSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPESVELKW 81

Query: 175 DNPDYDKLINYYVKQK 190
             P+ ++LI +   +K
Sbjct: 82  SEPNEEELIKFMCGEK 97


>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId:
           11034]}
          Length = 152

 Score = 26.8 bits (59), Expect = 1.6
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 161 EGKMFSPGNLRATFDNPDYDKLINYYVKQKYTLRY 195
           EGK+  P +++ T D+P   KL  +     Y + +
Sbjct: 21  EGKVMKPLHVKGTIDHPVLSKL-KFTKSSAYDMEF 54


>d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus
           [TaxId: 11033]}
          Length = 149

 Score = 26.4 bits (58), Expect = 1.7
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 161 EGKMFSPGNLRATFDNPDYDKLINYYVKQKYTLRY 195
             K+  P +++   DN D  KL  +    KY L  
Sbjct: 19  GDKVMKPAHVKGVIDNADLAKL-AFKKSSKYDLEC 52


>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli
           [TaxId: 562]}
          Length = 209

 Score = 25.4 bits (55), Expect = 5.6
 Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 6/38 (15%)

Query: 164 MFSPGNLRATFDNPDYD----KLI--NYYVKQKYTLRY 195
           M  P NL  TF   D +    + +   ++    Y  R+
Sbjct: 1   MLKPDNLPVTFGKNDVEIIARETLYRGFFSLDLYRFRH 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0586    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 842,067
Number of extensions: 39477
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 8
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)