BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027782
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TUA|A Chain A, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Ape0754 From Aeropyrum Pernix
Length = 191
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 96 NLQKCADFVHAFMLGFDVIDAIALLRLDELYVESFEIKDVKTLRGE---HLSRAIGRLSG 152
NL K A+ V A LGF A LL D++ V + D+K + G+ HL R GR+ G
Sbjct: 59 NLMKAAEVVKAISLGFPPEKAFRLLEEDQILV----VVDLKQVVGDSQNHLKRIKGRIIG 114
Query: 153 KGGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVT 212
+GG+ + IE T T I + + ++ I+G + A+ ++ L G VY L +
Sbjct: 115 EGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHSTVYRHLERIM 174
Query: 213 ARLAER 218
+ R
Sbjct: 175 REIKRR 180
>pdb|2E3U|A Chain A, Crystal Structure Analysis Of Dim2p From Pyrococcus
Horikoshii Ot3
pdb|3AEV|B Chain B, Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex From
Pyrococcus Horikoshii Ot3
Length = 219
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 2/169 (1%)
Query: 41 QFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKARRVELKTRADTPDISNLQKC 100
Q + V +P R + L I ++ K I ++ + V + + +T D + K
Sbjct: 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKA 93
Query: 101 ADFVHAFMLGFDVIDAIALLRLDELYVESFEIKDVKTLRGEH-LSRAIGRLSGKGGKTKF 159
D V A GF A LL E Y+E + D+ ++ L R GR+ G+ G+T+
Sbjct: 94 RDIVLAIGRGFSPERAFRLLNEGE-YLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQ 152
Query: 160 AIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKL 208
IE + + + + I+G+ I+IA+ ++ L GSP G VY L
Sbjct: 153 IIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSPHGSVYRYL 201
>pdb|2J4O|A Chain A, Structure Of Tab1
Length = 401
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 119 LLRLDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADTKIH 177
L RL +L +++ +IK V + G+ +R IG K G T + +A K++ +IA+ +IH
Sbjct: 215 LFRLSQLGLDAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIH 273
>pdb|2POM|A Chain A, Tab1 With Manganese Ion
Length = 372
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 119 LLRLDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADTKIH 177
L RL +L +++ +IK V + G+ +R IG K G T + +A K++ +IA+ +IH
Sbjct: 217 LFRLSQLGLDAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIH 275
>pdb|2POP|A Chain A, The Crystal Structure Of Tab1 And Bir1 Complex
pdb|2POP|C Chain C, The Crystal Structure Of Tab1 And Bir1 Complex
Length = 353
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 119 LLRLDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADTKIH 177
L RL +L +++ +IK V + G+ +R IG K G T + +A K++ +IA+ +IH
Sbjct: 198 LFRLSQLGLDAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIH 256
>pdb|3TFX|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Lactobacillus Acidophilus
pdb|3TFX|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Lactobacillus Acidophilus
Length = 259
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 168 RIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVT 212
++ I T +H LG IK A+D L I G+PAG KL AVT
Sbjct: 81 KLGITFTTVHALGGSQXIKSAKDGL---IAGTPAGHSVPKLLAVT 122
>pdb|1QFJ|A Chain A, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|B Chain B, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|C Chain C, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|D Chain D, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
Length = 232
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 151 SGKGGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCS 194
+G G+T + + +A+ I+I G F KIARD CS
Sbjct: 172 AGWRGRTGTVLTAVLQDHGTLAEHDIYIAGRFEMAKIARDLFCS 215
>pdb|3AAM|A Chain A, Crystal Structure Of Endonuclease Iv From Thermus
Thermophilus Hb8
Length = 270
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 89 ADTPDISNLQKCADFVHAFMLGFDVID 115
ADTP LQ C D HA+ G+DV +
Sbjct: 160 ADTP----LQVCLDTCHAYAAGYDVAE 182
>pdb|3KRM|A Chain A, Imp1 Kh34
pdb|3KRM|B Chain B, Imp1 Kh34
pdb|3KRM|C Chain C, Imp1 Kh34
Length = 163
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 144 SRAIGRLSGKGGKTKFAIENATKTRIVI 171
+ A GR+ GKGGKT ++N T +V+
Sbjct: 93 ASAAGRVIGKGGKTVNELQNLTAAEVVV 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,303,924
Number of Sequences: 62578
Number of extensions: 194305
Number of successful extensions: 424
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 11
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)