Query 027782
Match_columns 219
No_of_seqs 125 out of 557
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 01:55:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tua_A Hypothetical protein AP 100.0 7.4E-55 2.5E-59 369.5 15.6 175 43-218 6-180 (191)
2 2e3u_A PH-DIM2P, hypothetical 100.0 1E-48 3.4E-53 337.9 14.5 177 41-218 34-211 (219)
3 2jvz_A KH type-splicing, FAR u 99.7 3.1E-17 1E-21 132.4 10.7 140 41-198 2-160 (164)
4 2anr_A Neuro-oncological ventr 99.7 5.4E-16 1.9E-20 127.3 11.7 147 40-201 5-178 (178)
5 3krm_A Insulin-like growth fac 99.7 7.2E-16 2.5E-20 124.7 11.3 136 40-197 2-155 (163)
6 1j4w_A FUSE binding protein; s 99.6 3.2E-16 1.1E-20 128.4 8.7 141 40-196 2-174 (174)
7 2jzx_A Poly(RC)-binding protei 99.6 3.3E-15 1.1E-19 120.5 9.4 137 40-196 4-157 (160)
8 2qnd_A FMR1 protein; KH domain 99.3 5E-12 1.7E-16 101.7 9.2 124 41-197 4-141 (144)
9 1dtj_A RNA-binding neurooncolo 98.9 2.1E-09 7.2E-14 76.8 4.7 54 144-197 11-74 (76)
10 1ec6_A RNA-binding protein NOV 98.8 3.6E-09 1.2E-13 77.8 4.5 55 143-197 10-74 (87)
11 2opv_A KHSRP protein; KH domai 98.8 4.5E-09 1.5E-13 77.1 4.9 54 144-197 22-84 (85)
12 1x4n_A FAR upstream element bi 98.8 4.5E-09 1.6E-13 78.3 4.8 54 144-197 23-83 (92)
13 2p2r_A Poly(RC)-binding protei 98.8 4.4E-09 1.5E-13 75.4 4.5 54 144-197 13-73 (76)
14 2ctm_A Vigilin; K homology typ 98.8 9.8E-09 3.4E-13 77.3 6.3 54 144-197 25-84 (95)
15 1zzk_A Heterogeneous nuclear r 98.7 9.2E-09 3.1E-13 74.9 5.2 54 144-197 15-75 (82)
16 1x4m_A FAR upstream element bi 98.7 1.9E-08 6.4E-13 75.2 7.0 55 144-198 23-86 (94)
17 2hh2_A KH-type splicing regula 98.7 1.7E-08 5.9E-13 77.2 6.1 56 144-199 15-80 (107)
18 2ctk_A Vigilin; K homology typ 98.7 1.3E-08 4.5E-13 77.7 5.0 54 144-197 25-83 (104)
19 1j5k_A Heterogeneous nuclear r 98.7 1E-08 3.4E-13 75.9 4.0 54 144-197 22-82 (89)
20 2dgr_A Ring finger and KH doma 98.7 3.3E-08 1.1E-12 72.8 6.3 54 144-197 18-75 (83)
21 1wvn_A Poly(RC)-binding protei 98.7 1.5E-08 5.3E-13 73.6 4.5 56 144-199 14-76 (82)
22 1we8_A Tudor and KH domain con 98.7 1.2E-08 4.3E-13 77.5 4.1 54 144-197 23-85 (104)
23 1vig_A Vigilin; RNA-binding pr 98.7 1.8E-08 6.1E-13 71.7 4.6 52 145-196 14-70 (71)
24 2hh3_A KH-type splicing regula 98.6 1.6E-08 5.4E-13 77.7 3.6 54 144-197 19-79 (106)
25 2axy_A Poly(RC)-binding protei 98.6 2.6E-08 8.8E-13 71.2 4.4 54 144-197 13-71 (73)
26 3n89_A Defective in GERM LINE 98.6 1.8E-07 6.3E-12 86.1 10.8 153 39-196 28-259 (376)
27 2ctl_A Vigilin; K homology typ 98.6 4.9E-08 1.7E-12 73.6 4.9 52 145-196 26-85 (97)
28 2cte_A Vigilin; K homology typ 98.6 6.4E-08 2.2E-12 72.3 5.4 54 144-197 25-83 (94)
29 2opv_A KHSRP protein; KH domai 98.5 3.9E-07 1.3E-11 66.7 8.8 64 40-109 13-84 (85)
30 1dtj_A RNA-binding neurooncolo 98.5 1.6E-07 5.6E-12 66.8 6.4 63 41-108 3-73 (76)
31 1wvn_A Poly(RC)-binding protei 98.4 3.9E-07 1.3E-11 66.1 6.3 65 39-108 4-73 (82)
32 2yqr_A KIAA0907 protein; struc 98.4 5E-07 1.7E-11 70.9 6.6 65 145-214 28-110 (119)
33 2p2r_A Poly(RC)-binding protei 98.4 3.7E-07 1.3E-11 65.2 5.1 65 40-109 4-73 (76)
34 1we8_A Tudor and KH domain con 98.4 4.8E-07 1.6E-11 68.7 5.8 65 40-109 14-85 (104)
35 2cte_A Vigilin; K homology typ 98.4 4.8E-07 1.7E-11 67.5 5.6 64 40-108 16-82 (94)
36 1x4m_A FAR upstream element bi 98.3 7.7E-07 2.6E-11 66.4 6.0 66 39-109 13-85 (94)
37 1zzk_A Heterogeneous nuclear r 98.3 1.6E-06 5.3E-11 63.0 7.5 64 40-108 6-74 (82)
38 1ec6_A RNA-binding protein NOV 98.3 5.3E-07 1.8E-11 66.1 4.9 64 41-109 3-74 (87)
39 1k1g_A SF1-BO isoform; splicin 98.3 4.7E-07 1.6E-11 72.0 4.8 53 146-198 23-99 (131)
40 1x4n_A FAR upstream element bi 98.3 1.2E-06 4.2E-11 65.0 6.4 64 40-108 14-82 (92)
41 2hh2_A KH-type splicing regula 98.3 1.4E-06 4.8E-11 66.5 6.6 62 42-108 8-77 (107)
42 1j5k_A Heterogeneous nuclear r 98.3 8.4E-07 2.9E-11 65.4 5.0 65 39-108 12-81 (89)
43 2dgr_A Ring finger and KH doma 98.3 9.7E-07 3.3E-11 64.9 5.3 63 40-107 9-73 (83)
44 1vig_A Vigilin; RNA-binding pr 98.2 2.1E-06 7.2E-11 60.9 6.3 64 39-107 3-69 (71)
45 2hh3_A KH-type splicing regula 98.2 2.3E-06 7.8E-11 65.5 6.7 64 40-108 10-78 (106)
46 2ctj_A Vigilin; K homology typ 98.2 2.5E-06 8.6E-11 64.2 6.2 54 144-197 25-84 (95)
47 2jvz_A KH type-splicing, FAR u 98.2 1.6E-06 5.4E-11 69.3 5.2 55 144-198 10-73 (164)
48 2anr_A Neuro-oncological ventr 98.2 1.8E-06 6E-11 70.3 5.2 58 144-201 14-81 (178)
49 2jzx_A Poly(RC)-binding protei 98.1 1.6E-06 5.4E-11 69.4 4.2 53 144-196 13-70 (160)
50 2cpq_A FragIle X mental retard 98.1 2E-06 6.9E-11 64.6 4.5 65 39-107 13-78 (91)
51 2axy_A Poly(RC)-binding protei 98.1 2.8E-06 9.6E-11 60.5 5.0 64 40-108 4-70 (73)
52 2ctk_A Vigilin; K homology typ 98.1 2.9E-06 9.8E-11 64.6 4.6 67 41-112 17-86 (104)
53 2bl5_A MGC83862 protein, quaki 98.0 4E-06 1.4E-10 67.6 4.9 52 146-197 18-100 (140)
54 3krm_A Insulin-like growth fac 98.0 3.4E-06 1.2E-10 67.6 4.4 54 144-197 11-72 (163)
55 2ctl_A Vigilin; K homology typ 98.0 1.1E-05 3.8E-10 60.6 6.8 64 40-108 16-85 (97)
56 2ctm_A Vigilin; K homology typ 98.0 1.1E-05 3.9E-10 60.3 6.5 64 40-108 16-83 (95)
57 2cpq_A FragIle X mental retard 98.0 9.5E-06 3.3E-10 60.9 5.2 52 145-196 24-79 (91)
58 1j4w_A FUSE binding protein; s 97.8 3.2E-05 1.1E-09 62.7 6.8 63 40-107 103-173 (174)
59 2ctf_A Vigilin; K homology typ 97.8 2.6E-05 8.8E-10 59.2 4.7 55 143-197 34-91 (102)
60 2ctj_A Vigilin; K homology typ 97.7 5.4E-05 1.8E-09 56.8 5.1 64 39-108 15-83 (95)
61 3u1k_A Polyribonucleotide nucl 97.6 3.4E-05 1.1E-09 75.2 3.6 62 42-108 568-629 (630)
62 1k1g_A SF1-BO isoform; splicin 97.5 0.00027 9.2E-09 56.0 7.1 66 41-110 7-99 (131)
63 2yqr_A KIAA0907 protein; struc 97.4 0.00074 2.5E-08 52.7 8.2 66 40-109 11-98 (119)
64 2e3u_A PH-DIM2P, hypothetical 97.3 0.00022 7.6E-09 61.0 5.0 58 143-200 41-105 (219)
65 2ctf_A Vigilin; K homology typ 97.2 0.0011 3.7E-08 50.2 7.7 65 40-109 26-91 (102)
66 3n89_A Defective in GERM LINE 97.2 0.00017 5.7E-09 66.4 3.6 54 142-195 36-103 (376)
67 3u1k_A Polyribonucleotide nucl 97.1 0.00017 5.9E-09 70.3 2.9 52 145-196 576-629 (630)
68 2qnd_A FMR1 protein; KH domain 96.9 0.001 3.5E-08 52.9 5.2 62 42-108 68-140 (144)
69 1tua_A Hypothetical protein AP 96.6 0.0011 3.7E-08 55.7 2.9 62 143-204 11-79 (191)
70 3v69_A Protein filia; RNA-bind 96.4 0.0031 1.1E-07 50.6 4.7 52 145-196 65-122 (140)
71 4aid_A Polyribonucleotide nucl 96.3 0.00072 2.5E-08 66.9 0.1 61 145-205 579-641 (726)
72 2bl5_A MGC83862 protein, quaki 96.2 0.0083 2.8E-07 48.1 6.2 65 42-110 3-101 (140)
73 4aid_A Polyribonucleotide nucl 96.0 0.0015 5E-08 64.7 0.9 66 43-113 572-637 (726)
74 2cxc_A NUSA; transcription ter 95.1 0.01 3.4E-07 47.8 2.6 102 40-172 35-139 (144)
75 3v69_A Protein filia; RNA-bind 91.3 0.8 2.7E-05 36.6 7.7 63 43-108 58-122 (140)
76 1e3p_A Guanosine pentaphosphat 88.3 0.045 1.5E-06 54.4 -2.2 60 44-108 601-660 (757)
77 3cdi_A Polynucleotide phosphor 88.1 0.095 3.2E-06 51.8 0.0 60 146-205 570-631 (723)
78 3cdi_A Polynucleotide phosphor 84.9 0.18 6.1E-06 49.9 0.0 61 43-108 562-622 (723)
79 1e3p_A Guanosine pentaphosphat 80.2 0.13 4.4E-06 51.2 -3.1 53 144-196 606-660 (757)
80 1k0r_A NUSA; two component arr 77.8 1.8 6.2E-05 39.5 4.0 94 50-173 249-344 (366)
81 4e9j_A General secretion pathw 77.2 9 0.00031 32.1 8.0 100 71-195 139-240 (246)
82 2pt7_G HP1451, hypothetical pr 72.6 0.93 3.2E-05 36.5 0.6 91 97-199 4-105 (152)
83 3gku_A Probable RNA-binding pr 70.3 1 3.6E-05 38.4 0.4 54 147-200 103-167 (225)
84 3ezj_A General secretion pathw 60.3 28 0.00095 28.8 7.4 101 72-195 136-238 (241)
85 2z0s_A Probable exosome comple 52.7 27 0.00092 29.3 6.1 67 145-211 157-229 (235)
86 2ba0_A Archeal exosome RNA bin 49.3 39 0.0013 28.3 6.5 65 146-210 146-215 (229)
87 4e9j_A General secretion pathw 46.3 32 0.0011 28.7 5.5 118 60-196 32-171 (246)
88 2asb_A Transcription elongatio 43.8 8.4 0.00029 33.4 1.5 29 145-173 193-221 (251)
89 3iev_A GTP-binding protein ERA 35.4 13 0.00044 31.8 1.4 27 145-171 250-284 (308)
90 2ftc_M Mitochondrial ribosomal 34.7 26 0.0009 26.2 2.9 26 95-121 8-33 (110)
91 1hh2_P NUSA, N utilization sub 34.0 13 0.00045 33.4 1.2 28 145-172 312-339 (344)
92 3oss_D Type 2 secretion system 31.1 44 0.0015 26.9 3.8 29 167-195 148-178 (181)
93 3gt0_A Pyrroline-5-carboxylate 30.6 15 0.00051 30.1 0.9 60 100-164 183-243 (247)
94 1i4j_A 50S ribosomal protein L 30.2 30 0.001 25.8 2.5 25 96-121 13-37 (110)
95 2ja9_A Exosome complex exonucl 29.4 1.3E+02 0.0045 24.1 6.4 74 43-121 93-167 (175)
96 2cxc_A NUSA; transcription ter 28.7 16 0.00055 28.9 0.8 39 40-78 102-140 (144)
97 2z0s_A Probable exosome comple 28.4 1.7E+02 0.0059 24.2 7.2 60 43-107 150-209 (235)
98 3r8s_S 50S ribosomal protein L 27.1 37 0.0013 25.3 2.5 26 95-121 12-37 (110)
99 3tnl_A Shikimate dehydrogenase 26.4 57 0.002 28.5 4.0 100 93-204 75-183 (315)
100 2ja9_A Exosome complex exonucl 26.0 71 0.0024 25.7 4.2 52 147-198 102-156 (175)
101 2lfv_A Protein DAMX; cell divi 30.9 15 0.00052 27.4 0.0 26 172-197 59-86 (106)
102 2nn6_G Exosome complex exonucl 23.8 65 0.0022 28.1 3.8 72 43-120 212-283 (289)
103 2asb_A Transcription elongatio 23.8 51 0.0017 28.4 3.1 40 41-80 184-223 (251)
104 2ooa_A E3 ubiquitin-protein li 23.3 67 0.0023 21.3 2.9 21 101-121 13-33 (52)
105 1wf3_A GTP-binding protein; GT 23.2 30 0.001 29.6 1.6 27 145-171 240-274 (301)
106 2o8x_A Probable RNA polymerase 22.3 44 0.0015 21.3 1.9 22 197-218 41-62 (70)
107 2zjr_P 50S ribosomal protein L 22.1 42 0.0014 26.1 2.0 26 95-121 33-58 (134)
108 1k0r_A NUSA; two component arr 21.2 59 0.002 29.5 3.1 41 40-80 306-346 (366)
109 2je6_I RRP4, exosome complex R 21.0 12 0.00041 32.0 -1.5 65 146-211 165-236 (251)
110 2y3m_A Emhofq, protein transpo 20.4 2.2E+02 0.0075 21.8 6.1 109 58-195 50-166 (175)
111 1hh2_P NUSA, N utilization sub 20.3 75 0.0026 28.5 3.6 41 40-80 302-342 (344)
No 1
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=100.00 E-value=7.4e-55 Score=369.53 Aligned_cols=175 Identities=25% Similarity=0.374 Sum_probs=170.8
Q ss_pred EEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCCceEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChHHHHHhhhc
Q 027782 43 QKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRL 122 (219)
Q Consensus 43 ~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~rGF~~e~A~~Ll~~ 122 (219)
.+++||++|+|+|||+||+++++|++++|++++||+.+++|+|+|+..|+||++++||+|||+||++||++++|++||+
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~Ll~- 84 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLE- 84 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGGGGS-
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhhccc-
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeEEecccccccchhhhhhhcceecCCCchHHHHHHhhCceEEEcCceEEEeeCCchHHHHHHHHHHHHcCCCCh
Q 027782 123 DELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAG 202 (219)
Q Consensus 123 Dd~~~e~i~I~dv~~~~~~~~~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~tV~IiG~~~~i~~Ar~aI~~Li~g~~~~ 202 (219)
||+|+++|+|.+++.++++||+|++|||||++|+|+++||++|||+|+|+|++|+|+|+|+++++||++|++||.|++|+
T Consensus 85 Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~~v~i~G~~~~i~~Ar~~i~~li~g~~h~ 164 (191)
T 1tua_A 85 EDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHS 164 (191)
T ss_dssp TTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSSEEEEEEEHHHHHHHHHHHHHHHTTCCHH
T ss_pred CcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcCCEEEEEeChHHHHHHHHHHHHHHcCCCch
Confidence 99999999999996568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhc
Q 027782 203 KVYSKLRAVTARLAER 218 (219)
Q Consensus 203 ~VY~~l~~~~~~~~~~ 218 (219)
+||++|+++++++|.+
T Consensus 165 ~vy~~~~~~~~~~k~~ 180 (191)
T 1tua_A 165 TVYRHLERIMREIKRR 180 (191)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999999874
No 2
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=100.00 E-value=1e-48 Score=337.92 Aligned_cols=177 Identities=26% Similarity=0.347 Sum_probs=160.8
Q ss_pred eEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCCceEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChHHHHHhh
Q 027782 41 QFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALL 120 (219)
Q Consensus 41 ~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~rGF~~e~A~~Ll 120 (219)
.+.++.||++|+++|||+||++++.|++++|++|+||+++|+|+|++++.|+||.+++||+++|+++++||+||+|..||
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g~~ll 113 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLL 113 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHHGGGG
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCccccceec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcceeeeEEeccc-ccccchhhhhhhcceecCCCchHHHHHHhhCceEEEcCceEEEeeCCchHHHHHHHHHHHHcCC
Q 027782 121 RLDELYVESFEIKDV-KTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGS 199 (219)
Q Consensus 121 ~~Dd~~~e~i~I~dv-~~~~~~~~~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~tV~IiG~~~~i~~Ar~aI~~Li~g~ 199 (219)
+ ||+++++|+|.++ +..+++|++|++|||||++|+|+++||++|||+|+|++++|+|+|++++++.||++|++||.|+
T Consensus 114 ~-dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~~~v~i~G~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 114 N-EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp S-TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEETTEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred c-CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECCeEEEEEeCHHHHHHHHHHHHHHHcCC
Confidence 8 9999999999998 6668899999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhHHHHHHHHHHhhc
Q 027782 200 PAGKVYSKLRAVTARLAER 218 (219)
Q Consensus 200 ~~~~VY~~l~~~~~~~~~~ 218 (219)
+|++||++||++++|+|+|
T Consensus 193 ~~~~vy~~l~~~~~~~~~~ 211 (219)
T 2e3u_A 193 PHGSVYRYLERRKKDLELE 211 (219)
T ss_dssp CHHHHHHHHHHC-------
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986
No 3
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=132.36 Aligned_cols=140 Identities=15% Similarity=0.189 Sum_probs=110.5
Q ss_pred eEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcC-------CceEEEEeCCCCCCHHHHHHHHHHHHHHHc----
Q 027782 41 QFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLK-------ARRVELKTRADTPDISNLQKCADFVHAFML---- 109 (219)
Q Consensus 41 ~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~-------~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~r---- 109 (219)
.+.++.||.+.++.|||+.|++++.|++.+|++|.++.. ++.|.|.+ ++..+.+|+++|.++..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~ii~e~~~ 76 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-----DPYKVQQACEMVMDILRERDQ 76 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEE-----CHHHHHHHHHHHHHHTTCSSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEc-----CHHHHHHHHHHHHHHHHhccC
Confidence 467899999999999999999999999999999999643 24677764 78999999999999876
Q ss_pred -CCChHHHHHhhhcCcceeeeEEecccccccchhhhhhhcceecCCCchHHHHHHhhCceEEEcC-------ceEEEeeC
Q 027782 110 -GFDVIDAIALLRLDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIAD-------TKIHILGS 181 (219)
Q Consensus 110 -GF~~e~A~~Ll~~Dd~~~e~i~I~dv~~~~~~~~~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~-------~tV~IiG~ 181 (219)
||++...... + .. +...+. .+...+|+|||++|++++.|++.|||+|.|.. ..|.|.|+
T Consensus 77 ~~~~~~~~~~~-~-~~-~~~~i~----------vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~ 143 (164)
T 2jvz_A 77 GGFGDRNEYGS-R-IG-GGIDVP----------VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP 143 (164)
T ss_dssp CCCSSCSSCTT-S-CS-SSBCCE----------EETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC
T ss_pred CCCCCccccCC-C-CC-ceEEEE----------EChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC
Confidence 3433211100 0 00 000111 23456999999999999999999999999984 46999999
Q ss_pred CchHHHHHHHHHHHHcC
Q 027782 182 FANIKIARDSLCSLILG 198 (219)
Q Consensus 182 ~~~i~~Ar~aI~~Li~g 198 (219)
.++++.|+.+|++++..
T Consensus 144 ~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 144 PDRCEHAARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999853
No 4
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.66 E-value=5.4e-16 Score=127.29 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=114.1
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCC--------ceEEEEeCCCCCCHHHHHHHHHHHHHHHcCC
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKA--------RRVELKTRADTPDISNLQKCADFVHAFMLGF 111 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~--------~~V~I~~~~~t~dp~~i~KA~d~I~Ai~rGF 111 (219)
..+..+.||.+.+|.|||+.|++++.|++.+|++|+++... +.|.|.+ ++.++.+|.++|.++...+
T Consensus 5 ~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G-----~~~~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 5 QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG-----TIEALNAVHGFIAEKIREM 79 (178)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEE-----CHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEe-----CHHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999999999999999999997432 3667764 6889999999999998877
Q ss_pred ChHHHH----Hhhh------cCcceeeeEEecccccccchhhhhhhcceecCCCchHHHHHHhhCceEEEcCc-------
Q 027782 112 DVIDAI----ALLR------LDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADT------- 174 (219)
Q Consensus 112 ~~e~A~----~Ll~------~Dd~~~e~i~I~dv~~~~~~~~~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~------- 174 (219)
....+. .++. .+......+. .+...+|+|||++|++++.|++.|||+|.|...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----------Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~ 149 (178)
T 2anr_A 80 PQNVAKTEPVSILQPQTTVNPDRANQVKII----------VPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ 149 (178)
T ss_dssp CCC-----------------CGGGGEEEEE----------EEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CC
T ss_pred CCccccCCcccccCCccCCCCCCceEEEEE----------EchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCC
Confidence 543221 0110 0111111122 234568999999999999999999999999754
Q ss_pred --eEEEeeCCchHHHHHHHHHHHHcCCCC
Q 027782 175 --KIHILGSFANIKIARDSLCSLILGSPA 201 (219)
Q Consensus 175 --tV~IiG~~~~i~~Ar~aI~~Li~g~~~ 201 (219)
.|.|.|+.++++.|+..|..++...||
T Consensus 150 ~~~v~I~G~~~~v~~A~~~I~~~i~e~p~ 178 (178)
T 2anr_A 150 NRVVTVSGEPEQNRKAVELIIQKIQEDPQ 178 (178)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHSCCC
T ss_pred ceEEEEEcCHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999999999999976654
No 5
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.65 E-value=7.2e-16 Score=124.73 Aligned_cols=136 Identities=17% Similarity=0.233 Sum_probs=109.3
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcC------CceEEEEeCCCCCCHHHHHHHHHHHHHHHcC---
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLK------ARRVELKTRADTPDISNLQKCADFVHAFMLG--- 110 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~------~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~rG--- 110 (219)
.++..+.||.+.+|.|||+.|++++.|++.+|++|.+... ++.|.|.+ ++.++.+|+..|..+...
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G-----~~e~v~~A~~~I~~~~~e~~~ 76 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITG-----PPEAQFKAQGRIYGKLKEENF 76 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEE-----CHHHHHHHHHHHHHHHHHTTS
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEc-----CHHHHHHHHHHHHHHHhcccc
Confidence 4678999999999999999999999999999999999753 24577774 789999999999877432
Q ss_pred CChHHHHHhhhcCcceeeeEEecccccccchhhhhhhcceecCCCchHHHHHHhhCceEEEcCc---------eEEEeeC
Q 027782 111 FDVIDAIALLRLDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADT---------KIHILGS 181 (219)
Q Consensus 111 F~~e~A~~Ll~~Dd~~~e~i~I~dv~~~~~~~~~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~---------tV~IiG~ 181 (219)
|++.. +..+...+.| +...+|+|||++|.+++.|++.|||+|.|.++ .|.|.|+
T Consensus 77 ~~~~~-------~~~~~~~i~v----------p~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~ 139 (163)
T 3krm_A 77 FGPKE-------EVKLETHIRV----------PASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGH 139 (163)
T ss_dssp SCSSC-------CCCEEEEEEE----------ETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEEC
T ss_pred ccccc-------CCceEEEEEc----------ChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeC
Confidence 12110 1111112222 34569999999999999999999999999865 6899999
Q ss_pred CchHHHHHHHHHHHHc
Q 027782 182 FANIKIARDSLCSLIL 197 (219)
Q Consensus 182 ~~~i~~Ar~aI~~Li~ 197 (219)
.++++.|+.+|..++.
T Consensus 140 ~~~v~~A~~~I~~~i~ 155 (163)
T 3krm_A 140 FYASQMAQRKIRDILA 155 (163)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999985
No 6
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.65 E-value=3.2e-16 Score=128.43 Aligned_cols=141 Identities=16% Similarity=0.185 Sum_probs=107.9
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCC-----ceEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChH
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKA-----RRVELKTRADTPDISNLQKCADFVHAFMLGFDVI 114 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~-----~~V~I~~~~~t~dp~~i~KA~d~I~Ai~rGF~~e 114 (219)
..+.++.||.+.++.|||+.|++++.|++.++++|+++... +.|.|.. ++..+.+|.++|.++.+.+...
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~~~~~~~~ 76 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITG-----PPDRAQHAAEIITDLLRSVQAG 76 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEE-----CHHHHHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHHHhcccC
Confidence 35688999999999999999999999999999999998543 4677764 6899999999999887644210
Q ss_pred ---------HHHHhhhcCcc--------eeeeEEecccccccchhhhhhhcceecCCCchHHHHHHhhCceEEEcC----
Q 027782 115 ---------DAIALLRLDEL--------YVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIAD---- 173 (219)
Q Consensus 115 ---------~A~~Ll~~Dd~--------~~e~i~I~dv~~~~~~~~~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~---- 173 (219)
.+...+. +++ ....+.| +...+|+|||++|++++.|++.|||+|.|.+
T Consensus 77 ~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~i~v----------p~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~ 145 (174)
T 1j4w_A 77 NPGGPGPGGRGRGRGQ-GNWNMGPPGGLQEFNFIV----------PTGKTGLIIGKGGETIKSISQQSGARIELQRNPPP 145 (174)
T ss_dssp ----------------------------CEEEEEE----------ETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTT
T ss_pred CCCCCCCCCCCCCCCC-CccccCCCCCcEEEEEEE----------ChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCC
Confidence 0111111 111 1111222 2456999999999999999999999999985
Q ss_pred ------ceEEEeeCCchHHHHHHHHHHHH
Q 027782 174 ------TKIHILGSFANIKIARDSLCSLI 196 (219)
Q Consensus 174 ------~tV~IiG~~~~i~~Ar~aI~~Li 196 (219)
..|.|.|+.++++.|+..|.++|
T Consensus 146 ~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 146 NADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp TSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 35999999999999999999875
No 7
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=3.3e-15 Score=120.47 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=106.6
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCC---ceEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChHHH
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKA---RRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDA 116 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~---~~V~I~~~~~t~dp~~i~KA~d~I~Ai~rGF~~e~A 116 (219)
.-+..+.||.+.+|.|||+.|++++.|++.+|++|+++... +.|.|.+ ++.++.+|+.+|..... +.
T Consensus 4 ~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~i~-----e~ 73 (160)
T 2jzx_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAG-----PTNAIFKAFAMIIDKLE-----ED 73 (160)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEE-----EHHHHHHHHHHHHHHHH-----HH
T ss_pred cEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEe-----CHHHHHHHHHHHHHHHH-----hh
Confidence 45678999999999999999999999999999999998652 4777775 57899999998876532 11
Q ss_pred HH-hhh-----cCcceeeeEEecccccccchhhhhhhcceecCCCchHHHHHHhhCceEEEcC--------ceEEEeeCC
Q 027782 117 IA-LLR-----LDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIAD--------TKIHILGSF 182 (219)
Q Consensus 117 ~~-Ll~-----~Dd~~~e~i~I~dv~~~~~~~~~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~--------~tV~IiG~~ 182 (219)
.. -.. ........+. .+...+|+|||++|++++.|++.|||+|.|.+ ..|.|.|+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~i~----------vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~ 143 (160)
T 2jzx_A 74 ISSSMTNSTAASRPPVTLRLV----------VPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIP 143 (160)
T ss_dssp HTSCCCSSSCCCCCSEEEEEE----------EEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECH
T ss_pred ccccCCCCccCCCCCEEEEEE----------EChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCH
Confidence 00 000 0011111122 23467999999999999999999999999985 469999999
Q ss_pred chHHHHHHHHHHHH
Q 027782 183 ANIKIARDSLCSLI 196 (219)
Q Consensus 183 ~~i~~Ar~aI~~Li 196 (219)
++++.|+..|+.++
T Consensus 144 ~~v~~A~~~I~~~i 157 (160)
T 2jzx_A 144 QSIIECVKQICVVM 157 (160)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998876
No 8
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.32 E-value=5e-12 Score=101.74 Aligned_cols=124 Identities=15% Similarity=0.064 Sum_probs=93.6
Q ss_pred eEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCC-ceEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChHHHHHh
Q 027782 41 QFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKA-RRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIAL 119 (219)
Q Consensus 41 ~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~-~~V~I~~~~~t~dp~~i~KA~d~I~Ai~rGF~~e~A~~L 119 (219)
.+.++.||.+.+|.++|++|..++.|++.+|+.+-..+.+ ..+.+.. .+|..+.+|+.++.
T Consensus 4 ~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~~~~~~i~~~----~~p~~v~~~~~~l~-------------- 65 (144)
T 2qnd_A 4 FHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYG----EDQDAVKKARSFLE-------------- 65 (144)
T ss_dssp CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEETTTTEEEEEE----SSHHHHHHHHHHHC--------------
T ss_pred eEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCCCchheeecc----CCHHHHHHHHHhhh--------------
Confidence 3567999999999999999999999999999554333332 3333333 56877877765432
Q ss_pred hhcCcceeeeEEecccccccchhhhhhhcceecCCCchHHHHHHhhCc-eEEEcCc------------eEEEeeCCchHH
Q 027782 120 LRLDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKT-RIVIADT------------KIHILGSFANIK 186 (219)
Q Consensus 120 l~~Dd~~~e~i~I~dv~~~~~~~~~R~~gRIIGk~G~t~~~IE~~Tg~-~I~V~~~------------tV~IiG~~~~i~ 186 (219)
.++ ..+. .+...+|++|||+|+|++.+..+||+ +|.|.+. +|.|.|+.++++
T Consensus 66 --~~e-----~~v~--------Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~ 130 (144)
T 2qnd_A 66 --FAE-----DVIQ--------VPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIA 130 (144)
T ss_dssp --EEE-----EEEE--------EEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHH
T ss_pred --cce-----EEEE--------ECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHH
Confidence 111 1111 23456999999999999999999997 9999731 378999999999
Q ss_pred HHHHHHHHHHc
Q 027782 187 IARDSLCSLIL 197 (219)
Q Consensus 187 ~Ar~aI~~Li~ 197 (219)
.|+..|++++.
T Consensus 131 ~Ak~li~~~l~ 141 (144)
T 2qnd_A 131 NATVLLDYHLN 141 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999884
No 9
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.85 E-value=2.1e-09 Score=76.81 Aligned_cols=54 Identities=30% Similarity=0.424 Sum_probs=49.1
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcCc----------eEEEeeCCchHHHHHHHHHHHHc
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIADT----------KIHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~----------tV~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
...+|+|||++|++++.|+..|||+|.|.+. .|.|.|+.++++.|+..|..++.
T Consensus 11 ~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 11 ENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVT 74 (76)
T ss_dssp TTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC
T ss_pred hHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999863 69999999999999999998873
No 10
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.80 E-value=3.6e-09 Score=77.85 Aligned_cols=55 Identities=29% Similarity=0.402 Sum_probs=50.0
Q ss_pred hhhhhcceecCCCchHHHHHHhhCceEEEcCc----------eEEEeeCCchHHHHHHHHHHHHc
Q 027782 143 LSRAIGRLSGKGGKTKFAIENATKTRIVIADT----------KIHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 143 ~~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~----------tV~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
+...+|+|||++|.+++.|++.|||+|.|.+. .|.|.|+.++++.|+..|+.++.
T Consensus 10 P~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 10 PENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVT 74 (87)
T ss_dssp EHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Confidence 34569999999999999999999999999863 69999999999999999999974
No 11
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.80 E-value=4.5e-09 Score=77.09 Aligned_cols=54 Identities=17% Similarity=0.378 Sum_probs=48.8
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcCc-e--------EEEeeCCchHHHHHHHHHHHHc
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIADT-K--------IHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~-t--------V~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
...+|+|||++|++++.|++.|||+|.|.++ + |.|.|+.++++.|+++|+.++.
T Consensus 22 ~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 22 AGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp TTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred hhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 3468999999999999999999999999863 3 9999999999999999999873
No 12
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.79 E-value=4.5e-09 Score=78.31 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=50.2
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcCc-------eEEEeeCCchHHHHHHHHHHHHc
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIADT-------KIHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~-------tV~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
...+|+|||++|++++.|++.|||+|.|.+. .|.|.|+.++++.|+..|+.++.
T Consensus 23 ~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 23 DGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVE 83 (92)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred hHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999974 69999999999999999999995
No 13
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.79 E-value=4.4e-09 Score=75.40 Aligned_cols=54 Identities=26% Similarity=0.353 Sum_probs=49.6
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcC-------ceEEEeeCCchHHHHHHHHHHHHc
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIAD-------TKIHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~-------~tV~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
...+|+|||++|.+++.|++.|||+|.|.+ ..|.|.|+.++++.|+..|..++.
T Consensus 13 ~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 13 NDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLS 73 (76)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred hHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999986 459999999999999999999884
No 14
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.77 E-value=9.8e-09 Score=77.27 Aligned_cols=54 Identities=24% Similarity=0.262 Sum_probs=49.7
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcCc------eEEEeeCCchHHHHHHHHHHHHc
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIADT------KIHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~------tV~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
.+.+|+|||++|++++.|++.|||+|.|.++ +|.|.|..++++.|+++|++|+.
T Consensus 25 ~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~~e~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 25 HRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEE 84 (95)
T ss_dssp TTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999875 79999999999999999999873
No 15
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.75 E-value=9.2e-09 Score=74.93 Aligned_cols=54 Identities=26% Similarity=0.325 Sum_probs=49.5
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcCc-------eEEEeeCCchHHHHHHHHHHHHc
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIADT-------KIHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~-------tV~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
...+|+|||++|++++.|++.|||+|.|.+. .|.|.|+.++++.|+..|..++.
T Consensus 15 ~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 15 KDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVK 75 (82)
T ss_dssp TTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred hHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999864 69999999999999999999884
No 16
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.75 E-value=1.9e-08 Score=75.22 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=49.9
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcCc---------eEEEeeCCchHHHHHHHHHHHHcC
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIADT---------KIHILGSFANIKIARDSLCSLILG 198 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~---------tV~IiG~~~~i~~Ar~aI~~Li~g 198 (219)
...+|+|||++|++++.|++.|||+|.|.++ .|.|.|+.++++.|+++|+.++..
T Consensus 23 ~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 23 ASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp HHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred hhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4569999999999999999999999999753 289999999999999999999953
No 17
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.71 E-value=1.7e-08 Score=77.24 Aligned_cols=56 Identities=27% Similarity=0.318 Sum_probs=50.7
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcCc----------eEEEeeCCchHHHHHHHHHHHHcCC
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIADT----------KIHILGSFANIKIARDSLCSLILGS 199 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~----------tV~IiG~~~~i~~Ar~aI~~Li~g~ 199 (219)
...+|+|||++|++++.|++.|||+|.|.+. .|.|.|+.++++.|+..|+.++...
T Consensus 15 ~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 15 THKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp GGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred HHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 3468999999999999999999999999863 5899999999999999999999644
No 18
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.70 E-value=1.3e-08 Score=77.73 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=49.8
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcCc-----eEEEeeCCchHHHHHHHHHHHHc
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIADT-----KIHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~-----tV~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
...+|+|||++|++++.|++.|||+|.|.+. +|.|.|+.++++.|+..|+.++.
T Consensus 25 ~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~~e~v~~A~~~I~~i~~ 83 (104)
T 2ctk_A 25 FDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVK 83 (104)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred hHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 4569999999999999999999999999875 79999999999999999999873
No 19
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.69 E-value=1e-08 Score=75.89 Aligned_cols=54 Identities=26% Similarity=0.323 Sum_probs=49.5
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcC-------ceEEEeeCCchHHHHHHHHHHHHc
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIAD-------TKIHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~-------~tV~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
...+|+|||++|++++.|++.|||+|.|.+ ..|.|.|+.++++.|+..|+.++.
T Consensus 22 ~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 22 KDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVK 82 (89)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred hhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHH
Confidence 456999999999999999999999999986 359999999999999999999884
No 20
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=3.3e-08 Score=72.82 Aligned_cols=54 Identities=28% Similarity=0.335 Sum_probs=48.6
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcC----ceEEEeeCCchHHHHHHHHHHHHc
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIAD----TKIHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~----~tV~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
...+|.|||++|.+++.||+.|||+|.|.. ..|.|.|+.++++.|++.|+.++.
T Consensus 18 ~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~~e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 18 YRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHIT 75 (83)
T ss_dssp HHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred hHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcCHHHHHHHHHHHHHHHh
Confidence 356999999999999999999999999982 348889999999999999999873
No 21
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.67 E-value=1.5e-08 Score=73.64 Aligned_cols=56 Identities=25% Similarity=0.364 Sum_probs=49.5
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcCc-------eEEEeeCCchHHHHHHHHHHHHcCC
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIADT-------KIHILGSFANIKIARDSLCSLILGS 199 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~-------tV~IiG~~~~i~~Ar~aI~~Li~g~ 199 (219)
...+|.|||++|++++.|++.|||+|.|.+. .|.|.|+.++++.|+..|..++...
T Consensus 14 ~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 14 NNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp GGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred hHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4568999999999999999999999999862 5999999999999999999998543
No 22
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.67 E-value=1.2e-08 Score=77.52 Aligned_cols=54 Identities=26% Similarity=0.435 Sum_probs=49.4
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcC---------ceEEEeeCCchHHHHHHHHHHHHc
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIAD---------TKIHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~---------~tV~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
...+|+|||++|++++.|+..|||+|.|.+ ..|.|.|+.++++.|+..|..++.
T Consensus 23 ~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 23 QRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVS 85 (104)
T ss_dssp TTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred hhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 456999999999999999999999999985 359999999999999999999984
No 23
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.67 E-value=1.8e-08 Score=71.72 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=47.4
Q ss_pred hhhcceecCCCchHHHHHHhhCceEEEcCc-----eEEEeeCCchHHHHHHHHHHHH
Q 027782 145 RAIGRLSGKGGKTKFAIENATKTRIVIADT-----KIHILGSFANIKIARDSLCSLI 196 (219)
Q Consensus 145 R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~-----tV~IiG~~~~i~~Ar~aI~~Li 196 (219)
..+|+|||++|++++.|++.|||+|.|.+. .|.|.|+.++++.|++.|..|+
T Consensus 14 ~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 14 KFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp SHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred HHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999863 7999999999999999998764
No 24
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.63 E-value=1.6e-08 Score=77.66 Aligned_cols=54 Identities=22% Similarity=0.342 Sum_probs=49.1
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcCc-------eEEEeeCCchHHHHHHHHHHHHc
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIADT-------KIHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~-------tV~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
...+|+|||++|++++.|++.|+|+|.|.++ .|.|.|+.++++.|+++|++++.
T Consensus 19 ~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 19 RHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQ 79 (106)
T ss_dssp TTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHh
Confidence 3458999999999999999999999999742 59999999999999999999984
No 25
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.63 E-value=2.6e-08 Score=71.19 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=49.5
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcCc-----eEEEeeCCchHHHHHHHHHHHHc
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIADT-----KIHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~-----tV~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
....|.|||++|.+++.|++.|||+|.|.+. .|.|.|+.+++..|+..|..++.
T Consensus 13 ~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 13 GKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLE 71 (73)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred hhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeCHHHHHHHHHHHHHHHh
Confidence 4569999999999999999999999999875 49999999999999999998874
No 26
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.61 E-value=1.8e-07 Score=86.11 Aligned_cols=153 Identities=15% Similarity=0.140 Sum_probs=103.9
Q ss_pred ceeEEEEeeCCCccccchhcCc--cchhHHHhhcccEEEEEc----------CCceEEEEeCCCCCCHHHHHHHHHHHHH
Q 027782 39 RVQFQKVNVPPHRYSPLKKVWM--DIYTPIFEQMKIDIRMNL----------KARRVELKTRADTPDISNLQKCADFVHA 106 (219)
Q Consensus 39 ~~~~~~I~IP~~Rv~~lig~wg--~i~k~i~e~~~~~i~id~----------~~~~V~I~~~~~t~dp~~i~KA~d~I~A 106 (219)
..-|.++.||+.-.+.|||++| +.++.|.+.++|+|.+-. +...|.|. |.+..+.+|+..|++
T Consensus 28 ~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtIt-----G~~enVE~AR~~I~~ 102 (376)
T 3n89_A 28 TRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTIT-----GYFGDVDRARMLMRR 102 (376)
T ss_dssp TEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEE-----EEHHHHHHHHHHHHH
T ss_pred CEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEE-----cCHHHHHHHHHHHHh
Confidence 4667889999999999999999 999999999999999932 22457787 478999999999988
Q ss_pred HH----------cCCChHHHHHhhhc-Cccee---------------eeEEeccccc-----------c----cc-----
Q 027782 107 FM----------LGFDVIDAIALLRL-DELYV---------------ESFEIKDVKT-----------L----RG----- 140 (219)
Q Consensus 107 i~----------rGF~~e~A~~Ll~~-Dd~~~---------------e~i~I~dv~~-----------~----~~----- 140 (219)
+. .+.+.-+--+++.- +.+-+ +.+-|.-... + ..
T Consensus 103 l~Pl~i~~elp~~~i~~~~l~~~I~qq~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e~~~ 182 (376)
T 3n89_A 103 NCHFTVFMALSKMKMPLHELQAHVRQNPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHELIEAAKRLNEILFRESPAP 182 (376)
T ss_dssp SCEEEEEEECTTCSSCHHHHHHHHHHCCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC--CCC
T ss_pred cCCceEEEEccccccCcchhhhhhccceeCceEEEeCCcccccCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhhccc
Confidence 42 11111011111110 11111 1111111000 0 00
Q ss_pred --------hhhhhhhcceecCCC--chHHHHHHhhCceEEEcC-----------ceEEEeeCCchHHHHHHHHHHHH
Q 027782 141 --------EHLSRAIGRLSGKGG--KTKFAIENATKTRIVIAD-----------TKIHILGSFANIKIARDSLCSLI 196 (219)
Q Consensus 141 --------~~~~R~~gRIIGk~G--~t~~~IE~~Tg~~I~V~~-----------~tV~IiG~~~~i~~Ar~aI~~Li 196 (219)
.........|||++| ..++-|.+.|||+|.+.+ ..|.|.|+.+++..||+.|..|+
T Consensus 183 ~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 183 ENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp SSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred ccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 001124567999998 667999999999999973 14999999999999999999886
No 27
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.58 E-value=4.9e-08 Score=73.59 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=47.9
Q ss_pred hhhcceecCCCchHHHHHHhhCceEEEcCc--------eEEEeeCCchHHHHHHHHHHHH
Q 027782 145 RAIGRLSGKGGKTKFAIENATKTRIVIADT--------KIHILGSFANIKIARDSLCSLI 196 (219)
Q Consensus 145 R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~--------tV~IiG~~~~i~~Ar~aI~~Li 196 (219)
..+|+|||++|.+++.|++.|||+|.|.++ .|.|.|+.+++..|+++|..++
T Consensus 26 ~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv 85 (97)
T 2ctl_A 26 KYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIV 85 (97)
T ss_dssp TTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999753 6999999999999999999987
No 28
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.57 E-value=6.4e-08 Score=72.35 Aligned_cols=54 Identities=26% Similarity=0.289 Sum_probs=48.8
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcC-----ceEEEeeCCchHHHHHHHHHHHHc
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIAD-----TKIHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~-----~tV~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
...+|.|||++|++++.|+..|||+|.|.+ .+|.|.|+.++++.|+..|..++.
T Consensus 25 ~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~~e~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 25 KEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISA 83 (94)
T ss_dssp TTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred hHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEECHHHHHHHHHHHHHHhh
Confidence 345899999999999999999999999974 469999999999999999999873
No 29
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.54 E-value=3.9e-07 Score=66.65 Aligned_cols=64 Identities=9% Similarity=0.121 Sum_probs=56.6
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCCce--------EEEEeCCCCCCHHHHHHHHHHHHHHHc
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKARR--------VELKTRADTPDISNLQKCADFVHAFML 109 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~~~--------V~I~~~~~t~dp~~i~KA~d~I~Ai~r 109 (219)
..+..+.||+++++.|||+.|++++.|++.+|++|.++.+ +. |.|.+ +|.++.+|+++|.++.+
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~-~~~~~~~er~v~I~G-----~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQD-GSQNTNVDKPLRIIG-----DPYKVQQACEMVMDILR 84 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSS-SCSSTTSCEEEEEEE-----CHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCC-CCCCCCCceEEEEEe-----CHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999999999999863 44 88874 89999999999999853
No 30
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.53 E-value=1.6e-07 Score=66.83 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=56.3
Q ss_pred eEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcC--------CceEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 41 QFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLK--------ARRVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 41 ~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~--------~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
.+.++.||++.+|.|||++|++++.|++.+|++|.++.. ++.|.|.+ ++.++.+|+++|.++.
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITG-----SPAATQAAQYLISQRV 73 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEE-----SHHHHHHHHHHHHHHC
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEe-----CHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999864 36788875 6899999999999873
No 31
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.43 E-value=3.9e-07 Score=66.13 Aligned_cols=65 Identities=9% Similarity=0.096 Sum_probs=57.6
Q ss_pred ceeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcC-----CceEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 39 RVQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLK-----ARRVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 39 ~~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~-----~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
...+.++.||++.++.|||+.|++++.|++.+|++|.++.. ++.|.|.+ ++.++.+|+.+|.++.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~i 73 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITG-----SAASISLAQYLINARL 73 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEE-----CHHHHHHHHHHHHHHT
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEc-----CHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999752 56788874 6899999999999984
No 32
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=5e-07 Score=70.90 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=52.4
Q ss_pred hhhcceecCCCchHHHHHHhhCceEEEcCc-----------------eEEEee-CCchHHHHHHHHHHHHcCCCChhhhH
Q 027782 145 RAIGRLSGKGGKTKFAIENATKTRIVIADT-----------------KIHILG-SFANIKIARDSLCSLILGSPAGKVYS 206 (219)
Q Consensus 145 R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~-----------------tV~IiG-~~~~i~~Ar~aI~~Li~g~~~~~VY~ 206 (219)
..+|+|||++|+|++.||..|||+|.|.|+ +|+|.+ +.+.++.|++.|+.|+. .|+.
T Consensus 28 n~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~-----~v~~ 102 (119)
T 2yqr_A 28 NVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQ-----TVHA 102 (119)
T ss_dssp CHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHHHHH-----HHHH
T ss_pred CeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHHHHHHHhh-----chHH
Confidence 359999999999999999999999999744 688874 58888999999999984 3555
Q ss_pred HHHHHHHH
Q 027782 207 KLRAVTAR 214 (219)
Q Consensus 207 ~l~~~~~~ 214 (219)
-.....++
T Consensus 103 ~~~~~~~q 110 (119)
T 2yqr_A 103 EYSRFVNQ 110 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55444443
No 33
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.38 E-value=3.7e-07 Score=65.25 Aligned_cols=65 Identities=8% Similarity=0.079 Sum_probs=57.9
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEc-----CCceEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNL-----KARRVELKTRADTPDISNLQKCADFVHAFML 109 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~-----~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~r 109 (219)
..+..+.||++.+|.|||+.|++++.|++.+|++|.++. .++.|.|.+ +|.++.+|+.+|.++..
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITG-----SAASISLAQYLINVRLS 73 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEE-----CHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEe-----CHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999985 368888875 69999999999998743
No 34
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.37 E-value=4.8e-07 Score=68.67 Aligned_cols=65 Identities=9% Similarity=0.121 Sum_probs=57.3
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEc-------CCceEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNL-------KARRVELKTRADTPDISNLQKCADFVHAFML 109 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~-------~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~r 109 (219)
--+..+.||+++++.|||++|++++.|++.+|++|.|+. .++.|.|.+ ++..+.+|+++|.++..
T Consensus 14 p~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G-----~~~~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 14 PVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG-----TQKEVAAAKHLILEKVS 85 (104)
T ss_dssp EEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEE-----EHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEc-----CHHHHHHHHHHHHHHHh
Confidence 345789999999999999999999999999999999986 368888885 56689999999999854
No 35
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.36 E-value=4.8e-07 Score=67.54 Aligned_cols=64 Identities=8% Similarity=0.031 Sum_probs=57.4
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcC---CceEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLK---ARRVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~---~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
.-+..+.||++.++.|||++|++++.|++.+|++|.|+.. ++.|.|.+ ++.++.+|+++|.++.
T Consensus 16 ~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G-----~~e~v~~A~~~I~~i~ 82 (94)
T 2cte_A 16 QASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITG-----TKEGIEKARHEVLLIS 82 (94)
T ss_dssp CEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEE-----CHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEE-----CHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999753 58899875 4899999999999984
No 36
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.33 E-value=7.7e-07 Score=66.37 Aligned_cols=66 Identities=11% Similarity=0.155 Sum_probs=57.5
Q ss_pred ceeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcC-------CceEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q 027782 39 RVQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLK-------ARRVELKTRADTPDISNLQKCADFVHAFML 109 (219)
Q Consensus 39 ~~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~-------~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~r 109 (219)
...+.++.||+++++.|||+.|++++.|++.++++|.|+.. ++.|.|.. ++..+.+|+++|.++..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~i~ 85 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-----DPYKVQQAKEMVLELIR 85 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-----CTTTHHHHHHHHHHHHC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-----CHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999853 34488875 67899999999999854
No 37
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.33 E-value=1.6e-06 Score=62.99 Aligned_cols=64 Identities=9% Similarity=0.111 Sum_probs=56.7
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcC-----CceEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLK-----ARRVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~-----~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
..+.++.||++.++.|||+.|++++.|++.+|++|.++.. ++.|.|.. ++.++.+|+.+|.++.
T Consensus 6 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i 74 (82)
T 1zzk_A 6 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG-----TQDQIQNAQYLLQNSV 74 (82)
T ss_dssp CEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEE-----CHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEe-----CHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999999999753 35788875 6899999999999874
No 38
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.32 E-value=5.3e-07 Score=66.11 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=56.5
Q ss_pred eEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcC--------CceEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q 027782 41 QFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLK--------ARRVELKTRADTPDISNLQKCADFVHAFML 109 (219)
Q Consensus 41 ~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~--------~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~r 109 (219)
.+..+.||++.+|.|||++|++++.|++.+|++|.|+.. ++.|.|. +++.++.+|+++|.++..
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~-----G~~~~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTIT-----GSPAATQAAQYLISQRVT 74 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEE-----SSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEE-----cCHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999864 2577787 468999999999999843
No 39
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.32 E-value=4.7e-07 Score=72.02 Aligned_cols=53 Identities=23% Similarity=0.356 Sum_probs=46.8
Q ss_pred hhcceecCCCchHHHHHHhhCceEEEcCc-----------------------eEEEee-CCchHHHHHHHHHHHHcC
Q 027782 146 AIGRLSGKGGKTKFAIENATKTRIVIADT-----------------------KIHILG-SFANIKIARDSLCSLILG 198 (219)
Q Consensus 146 ~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~-----------------------tV~IiG-~~~~i~~Ar~aI~~Li~g 198 (219)
.+|+|||++|+|++.||..|||+|.|.|+ +|+|.+ +.+.++.|++.|+.|+.-
T Consensus 23 ~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 23 FVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred eeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 59999999999999999999999999762 577877 577889999999999964
No 40
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.30 E-value=1.2e-06 Score=65.01 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=57.2
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcC-----CceEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLK-----ARRVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~-----~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
..+.++.||.+.++.|||+.|++++.|++.++++|.|+.. ++.|.|.. ++.++.+|+.+|.++.
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G-----~~e~v~~A~~~I~~~i 82 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTG-----TPESVQSAKRLLDQIV 82 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEE-----CHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999864 25788875 6899999999999984
No 41
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.29 E-value=1.4e-06 Score=66.54 Aligned_cols=62 Identities=6% Similarity=0.085 Sum_probs=55.9
Q ss_pred EEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCC--------ceEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 42 FQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKA--------RRVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 42 ~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~--------~~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
+.++.||.+.++.|||+.|++++.|++.++++|.|+... +.|.|. +++.++.+|+++|.++.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~-----G~~e~v~~A~~~I~~~i 77 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIR-----GSPQQIDHAKQLIEEKI 77 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEE-----SCHHHHHHHHHHHHHHS
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEE-----CCHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999998652 677777 48999999999999984
No 42
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.27 E-value=8.4e-07 Score=65.44 Aligned_cols=65 Identities=9% Similarity=0.105 Sum_probs=58.1
Q ss_pred ceeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcC-----CceEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 39 RVQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLK-----ARRVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 39 ~~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~-----~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
...+.++.||++.++.|||+.|++++.|++.++++|.|+.. ++.|.|.. ++.++.+|+++|.++.
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G-----~~e~v~~A~~~I~~~i 81 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG-----TQDQIQNAQYLLQNSV 81 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEE-----EHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEc-----CHHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999999999853 57888875 5899999999999984
No 43
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=9.7e-07 Score=64.87 Aligned_cols=63 Identities=13% Similarity=-0.012 Sum_probs=54.8
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEc--CCceEEEEeCCCCCCHHHHHHHHHHHHHH
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNL--KARRVELKTRADTPDISNLQKCADFVHAF 107 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~--~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai 107 (219)
..+.++.||.+.++.|||++|++++.|++.++++|.|.. .+..|.|. +++.++.+|+++|.++
T Consensus 9 ~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~It-----G~~e~v~~A~~~I~~~ 73 (83)
T 2dgr_A 9 QTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVT-----GMPENVDRAREEIEAH 73 (83)
T ss_dssp SEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEE-----ECTTTHHHHHHHHHHH
T ss_pred ceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEE-----cCHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999999999983 34555565 4778999999999987
No 44
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.24 E-value=2.1e-06 Score=60.86 Aligned_cols=64 Identities=14% Similarity=0.182 Sum_probs=55.9
Q ss_pred ceeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCC---ceEEEEeCCCCCCHHHHHHHHHHHHHH
Q 027782 39 RVQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKA---RRVELKTRADTPDISNLQKCADFVHAF 107 (219)
Q Consensus 39 ~~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~---~~V~I~~~~~t~dp~~i~KA~d~I~Ai 107 (219)
+..+..+.||++.++.|||++|++++.|++.+|++|.|.... +.|.|.+ ++.++.+|++.|..+
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G-----~~~~v~~A~~~I~~i 69 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEG-----DPQGVQQAKRELLEL 69 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEE-----SSHHHHHHHHHHHHT
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEc-----CHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999997542 2899986 357899999999876
No 45
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.23 E-value=2.3e-06 Score=65.55 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=55.2
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCC-----ceEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKA-----RRVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~-----~~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
..+.++.||++.++.|||+.|++++.|++.++++|.|+.+. +.|.|.. ++.++.+|+++|.++.
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G-----~~e~v~~A~~~I~~ii 78 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMG-----PPDRCEHAARIINDLL 78 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEES-----SHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEe-----CHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999998543 3577774 6899999999999984
No 46
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.19 E-value=2.5e-06 Score=64.16 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=49.0
Q ss_pred hhhhcceecCCCchHHHHHHhh-CceEEEcC-c----eEEEeeCCchHHHHHHHHHHHHc
Q 027782 144 SRAIGRLSGKGGKTKFAIENAT-KTRIVIAD-T----KIHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~T-g~~I~V~~-~----tV~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
....+.|||++|++++.|++.| ||+|.|.+ . +|.|-|+..+++.|++.|+.|+.
T Consensus 25 ~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 25 AKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 4558899999999999999999 99999985 3 79999999999999999999884
No 47
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.18 E-value=1.6e-06 Score=69.27 Aligned_cols=55 Identities=16% Similarity=0.363 Sum_probs=48.9
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcC---------ceEEEeeCCchHHHHHHHHHHHHcC
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIAD---------TKIHILGSFANIKIARDSLCSLILG 198 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~---------~tV~IiG~~~~i~~Ar~aI~~Li~g 198 (219)
....|+|||++|.+++.|++.|||+|.|.. ..|.|.|+.+++..|+.+|..++..
T Consensus 10 ~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e 73 (164)
T 2jvz_A 10 AGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 73 (164)
T ss_dssp TTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTC
T ss_pred hhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 345899999999999999999999999953 2588999999999999999999963
No 48
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.17 E-value=1.8e-06 Score=70.33 Aligned_cols=58 Identities=24% Similarity=0.376 Sum_probs=51.0
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcCc----------eEEEeeCCchHHHHHHHHHHHHcCCCC
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIADT----------KIHILGSFANIKIARDSLCSLILGSPA 201 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~----------tV~IiG~~~~i~~Ar~aI~~Li~g~~~ 201 (219)
....|+|||++|.+++.|++.|||+|.|.+. .|.|.|+.+++..|+..|..++...++
T Consensus 14 ~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~ 81 (178)
T 2anr_A 14 SYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQ 81 (178)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCC
T ss_pred hhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCC
Confidence 4569999999999999999999999999742 478899999999999999999975543
No 49
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.13 E-value=1.6e-06 Score=69.36 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=48.2
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcCc-----eEEEeeCCchHHHHHHHHHHHH
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIADT-----KIHILGSFANIKIARDSLCSLI 196 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~-----tV~IiG~~~~i~~Ar~aI~~Li 196 (219)
....|+|||++|.+++.|++.|||+|.|.+. .|.|.|+.+++..|+..|..++
T Consensus 13 ~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i 70 (160)
T 2jzx_A 13 GKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 70 (160)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred hhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeCHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999864 6889999999999999998776
No 50
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.13 E-value=2e-06 Score=64.61 Aligned_cols=65 Identities=6% Similarity=-0.005 Sum_probs=59.3
Q ss_pred ceeEEEEeeCCCccccchhcCccchhHHHhhcccE-EEEEcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Q 027782 39 RVQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKID-IRMNLKARRVELKTRADTPDISNLQKCADFVHAF 107 (219)
Q Consensus 39 ~~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~-i~id~~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai 107 (219)
...+..+.||++.++.+||..|++++.|.+.+|++ |.++.++|.|.|.. .|..++.+|+++|..+
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG~V~I~g----~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYG----ESADAVKKARGFLEFV 78 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETTTTEEEEEE----SSHHHHHHHHHHHSCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCCEEEEEE----CCHHHHHHHHHHHHhh
Confidence 35677899999999999999999999999999998 99997679999997 5889999999999876
No 51
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.13 E-value=2.8e-06 Score=60.45 Aligned_cols=64 Identities=8% Similarity=0.004 Sum_probs=55.9
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCC---ceEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKA---RRVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~---~~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
..+..+.||++.+|.|||+.|++++.|.+.+|++|.++... +.|.|.+ ++.++.+|..+|..+.
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G-----~~~~v~~A~~~I~~~l 70 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAG-----PTNAIFKAFAMIIDKL 70 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEE-----CHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEe-----CHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999998652 3577775 6899999999999874
No 52
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.08 E-value=2.9e-06 Score=64.65 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=57.8
Q ss_pred eEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCC---ceEEEEeCCCCCCHHHHHHHHHHHHHHHcCCC
Q 027782 41 QFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKA---RRVELKTRADTPDISNLQKCADFVHAFMLGFD 112 (219)
Q Consensus 41 ~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~---~~V~I~~~~~t~dp~~i~KA~d~I~Ai~rGF~ 112 (219)
-+..+.||++.++.|||++|++++.|++.+|++|.|.... +.|.|.+ .+.++.+|+++|..+..-+.
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G-----~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITG-----LAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEE-----CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEc-----CHHHHHHHHHHHHHHHhhHH
Confidence 4678999999999999999999999999999999997542 3899986 46899999999999865443
No 53
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.05 E-value=4e-06 Score=67.57 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=44.0
Q ss_pred hhcceecCCCchHHHHHHhhCceEEEcCc-------------------------eEEEeeC-Cc-----hHHHHHHHHHH
Q 027782 146 AIGRLSGKGGKTKFAIENATKTRIVIADT-------------------------KIHILGS-FA-----NIKIARDSLCS 194 (219)
Q Consensus 146 ~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~-------------------------tV~IiG~-~~-----~i~~Ar~aI~~ 194 (219)
.+|||||++|.|++.||..|||+|.|.|+ .|.|.+. .+ .++.|.+.|+.
T Consensus 18 fiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I~~ 97 (140)
T 2bl5_A 18 FVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKK 97 (140)
T ss_dssp HHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHHH
T ss_pred eeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHHHH
Confidence 49999999999999999999999999873 5667774 43 57889999999
Q ss_pred HHc
Q 027782 195 LIL 197 (219)
Q Consensus 195 Li~ 197 (219)
|+.
T Consensus 98 lL~ 100 (140)
T 2bl5_A 98 LLV 100 (140)
T ss_dssp HSS
T ss_pred HCC
Confidence 884
No 54
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.04 E-value=3.4e-06 Score=67.57 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=48.6
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcCc--------eEEEeeCCchHHHHHHHHHHHHc
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIADT--------KIHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~--------tV~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
....|.|||++|.+++.|++.|||+|.|.+. .|.|.|+.+++..|+..|..++.
T Consensus 11 ~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~ 72 (163)
T 3krm_A 11 AQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLK 72 (163)
T ss_dssp GGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred hhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Confidence 4458999999999999999999999999763 38999999999999999988884
No 55
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.03 E-value=1.1e-05 Score=60.57 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=56.6
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCC------ceEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKA------RRVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~------~~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
..+..+.||+..++.|||+.|++++.|++.+|++|.|.... +.|.|.+ .+.++.+|+++|.++.
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G-----~~e~v~~A~~~I~~iv 85 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITG-----YEKNTEAARDAILRIV 85 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEES-----CHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999997543 3788875 5789999999999984
No 56
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.01 E-value=1.1e-05 Score=60.35 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=55.9
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCC----ceEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKA----RRVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~----~~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
.-+..+.||++.++.|||++|++++.|++.++++|.|.... +.|.|.+ .+.++.+|++.|.++.
T Consensus 16 ~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G-----~~e~v~~A~~~I~~i~ 83 (95)
T 2ctm_A 16 MVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTG-----LPENVEEAIDHILNLE 83 (95)
T ss_dssp CCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEES-----CHHHHHHHHHHHHHHH
T ss_pred cEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEc-----CHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999997542 2788885 5789999999999984
No 57
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.96 E-value=9.5e-06 Score=60.90 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=45.1
Q ss_pred hhhcceecCCCchHHHHHHhhCce-EEEcC--ceEEEee-CCchHHHHHHHHHHHH
Q 027782 145 RAIGRLSGKGGKTKFAIENATKTR-IVIAD--TKIHILG-SFANIKIARDSLCSLI 196 (219)
Q Consensus 145 R~~gRIIGk~G~t~~~IE~~Tg~~-I~V~~--~tV~IiG-~~~~i~~Ar~aI~~Li 196 (219)
..+|-+||++|++++.|.+.||++ |.|.+ .+|.|.| +.+.++.|++.|+.+-
T Consensus 24 dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 24 DLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp HHHHHHHTTTTHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred HHhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 348999999999999999999998 99984 6799999 7888888888876543
No 58
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.84 E-value=3.2e-05 Score=62.70 Aligned_cols=63 Identities=10% Similarity=0.066 Sum_probs=55.4
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcC--------CceEEEEeCCCCCCHHHHHHHHHHHHHH
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLK--------ARRVELKTRADTPDISNLQKCADFVHAF 107 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~--------~~~V~I~~~~~t~dp~~i~KA~d~I~Ai 107 (219)
..+..+.||.+.++.|||+.|++++.|++.+|++|.++.. ++.|.|. +++.++.+|+.+|.++
T Consensus 103 ~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~-----G~~~~v~~A~~~I~~~ 173 (174)
T 1j4w_A 103 LQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIR-----GTPQQIDYARQLIEEK 173 (174)
T ss_dssp -CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEE-----CCHHHHHHHHHHHHHH
T ss_pred cEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEE-----CCHHHHHHHHHHHHHh
Confidence 4577899999999999999999999999999999999854 3677786 5799999999999875
No 59
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.75 E-value=2.6e-05 Score=59.24 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=48.6
Q ss_pred hhhhhcceecCCCchHHHHHH-hhCceEEEc--CceEEEeeCCchHHHHHHHHHHHHc
Q 027782 143 LSRAIGRLSGKGGKTKFAIEN-ATKTRIVIA--DTKIHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 143 ~~R~~gRIIGk~G~t~~~IE~-~Tg~~I~V~--~~tV~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
+.+..+.|||++|.+++.|+. .++|.|.+. ++.|.|-|+.+.+..|+..|+.++.
T Consensus 34 p~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~~~~ItI~G~~~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 34 PSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKITLEGPTEDVSVAQEQIEGMVK 91 (102)
T ss_dssp CSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSSSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCCCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 345678999999999999999 579999998 4569999999999999999998873
No 60
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.66 E-value=5.4e-05 Score=56.80 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=56.1
Q ss_pred ceeEEEEeeCCCccccchhcCccchhHHHhhc-ccEEEEEcCCc----eEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 39 RVQFQKVNVPPHRYSPLKKVWMDIYTPIFEQM-KIDIRMNLKAR----RVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 39 ~~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~-~~~i~id~~~~----~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
+..+..+.||++..+.|||.+|++++.|++.+ |++|.|.. .+ .|.|.+ ....+.+|++.|.++.
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~-~g~~~~~V~I~G-----~~~~v~~A~~~I~~iv 83 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPV-EGSGSDTVVIRG-----PSSDVEKAKKQLLHLA 83 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCC-TTTTCCEEEEES-----CHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCC-CCCCcceEEEEc-----CHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999999999 99999974 45 899986 3459999999999984
No 61
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.57 E-value=3.4e-05 Score=75.24 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=55.9
Q ss_pred EEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCCceEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 42 FQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 42 ~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
+..+.||+++++.+||.+|++++.|++.+|++|.|+ ++|.|.|.. .|+.++.+|+++|++|.
T Consensus 568 ~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-d~G~V~I~~----~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 568 VETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-DEETFSVFA----PTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-SSSEEEEEE----SSHHHHHHHHHHTTC--
T ss_pred EEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-CCcEEEEEe----CCHHHHHHHHHHHHHHh
Confidence 466999999999999999999999999999999998 679999998 58889999999998874
No 62
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.48 E-value=0.00027 Score=56.00 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=56.1
Q ss_pred eEEEEeeCCC------ccccchhcCccchhHHHhhcccEEEEEcC---------------------CceEEEEeCCCCCC
Q 027782 41 QFQKVNVPPH------RYSPLKKVWMDIYTPIFEQMKIDIRMNLK---------------------ARRVELKTRADTPD 93 (219)
Q Consensus 41 ~~~~I~IP~~------Rv~~lig~wg~i~k~i~e~~~~~i~id~~---------------------~~~V~I~~~~~t~d 93 (219)
-+.+|.||.+ .+|.|+|..|.+++.|++.+||+|.|.-. .+.|.|.. .|
T Consensus 7 ~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a----~~ 82 (131)
T 1k1g_A 7 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTA----NT 82 (131)
T ss_dssp EEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEE----SS
T ss_pred EEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEE----CC
Confidence 3567888887 78899999999999999999999999752 46777876 57
Q ss_pred HHHHHHHHHHHHHHHcC
Q 027782 94 ISNLQKCADFVHAFMLG 110 (219)
Q Consensus 94 p~~i~KA~d~I~Ai~rG 110 (219)
+..+.+|.++|+.+..-
T Consensus 83 ~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 83 MENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88999999999998653
No 63
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.36 E-value=0.00074 Score=52.74 Aligned_cols=66 Identities=8% Similarity=0.004 Sum_probs=55.2
Q ss_pred eeEEEEeeCCC-------ccccchhcCccchhHHHhhcccEEEEEc---------------CCceEEEEeCCCCCCHHHH
Q 027782 40 VQFQKVNVPPH-------RYSPLKKVWMDIYTPIFEQMKIDIRMNL---------------KARRVELKTRADTPDISNL 97 (219)
Q Consensus 40 ~~~~~I~IP~~-------Rv~~lig~wg~i~k~i~e~~~~~i~id~---------------~~~~V~I~~~~~t~dp~~i 97 (219)
.-+.+|+||-+ .++.|+|..|++++.|++.+||+|.|.- +.+.|.|.. .|+.++
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a----~~~e~i 86 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISH----PKPEGL 86 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEE----SSHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEe----CCHHHH
Confidence 44567777754 7899999999999999999999999972 346788887 689999
Q ss_pred HHHHHHHHHHHc
Q 027782 98 QKCADFVHAFML 109 (219)
Q Consensus 98 ~KA~d~I~Ai~r 109 (219)
.+|+.+|..+..
T Consensus 87 ~~A~~~Ie~Ll~ 98 (119)
T 2yqr_A 87 AAAKKLCENLLQ 98 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999854
No 64
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.30 E-value=0.00022 Score=60.98 Aligned_cols=58 Identities=33% Similarity=0.354 Sum_probs=50.1
Q ss_pred hhhhhcceecCCCchHHHHHHhhCceEEEc-C-ceEEEeeCC-----chHHHHHHHHHHHHcCCC
Q 027782 143 LSRAIGRLSGKGGKTKFAIENATKTRIVIA-D-TKIHILGSF-----ANIKIARDSLCSLILGSP 200 (219)
Q Consensus 143 ~~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~-~-~tV~IiG~~-----~~i~~Ar~aI~~Li~g~~ 200 (219)
+....|-|||++|++++.|++.|||+|.+. + .+|.|-|+. +.+..|++.|..+..|..
T Consensus 41 P~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~ 105 (219)
T 2e3u_A 41 PKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFS 105 (219)
T ss_dssp CHHHHHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHhhhhhcccHHHHHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCC
Confidence 345689999999999999999999999998 4 468887764 899999999999987654
No 65
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.24 E-value=0.0011 Score=50.17 Aligned_cols=65 Identities=12% Similarity=0.144 Sum_probs=57.9
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhc-ccEEEEEcCCceEEEEeCCCCCCHHHHHHHHHHHHHHHc
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQM-KIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFML 109 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~-~~~i~id~~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~r 109 (219)
..+.++.||+.--++|||+.|+.++.|.+.+ +++|+|...++.|+|++ .+..+.+|+..|.++..
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~~~~ItI~G-----~~~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKITLEG-----PTEDVSVAQEQIEGMVK 91 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSSSCEEEEEE-----CHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCCCCEEEEEC-----CHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999975 99999987788899996 68999999999998753
No 66
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=97.22 E-value=0.00017 Score=66.45 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=48.2
Q ss_pred hhhhhhcceecCCC--chHHHHHHhhCceEEEcCc------------eEEEeeCCchHHHHHHHHHHH
Q 027782 142 HLSRAIGRLSGKGG--KTKFAIENATKTRIVIADT------------KIHILGSFANIKIARDSLCSL 195 (219)
Q Consensus 142 ~~~R~~gRIIGk~G--~t~~~IE~~Tg~~I~V~~~------------tV~IiG~~~~i~~Ar~aI~~L 195 (219)
.+.+..+.|||++| .+++.|...|||+|.+.+. .|.|-|..++++.||.+|..|
T Consensus 36 Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 36 FESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp CCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred EchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 44566788999999 9999999999999999753 399999999999999999986
No 67
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.14 E-value=0.00017 Score=70.27 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=43.1
Q ss_pred hhhcceecCCCchHHHHHHhhCceEEEcC-ceEEEeeCC-chHHHHHHHHHHHH
Q 027782 145 RAIGRLSGKGGKTKFAIENATKTRIVIAD-TKIHILGSF-ANIKIARDSLCSLI 196 (219)
Q Consensus 145 R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~-~tV~IiG~~-~~i~~Ar~aI~~Li 196 (219)
-.+|++||++|++++.|++.|||+|.|.+ .+|.|.|.- +.++.|++.|+.++
T Consensus 576 ~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 576 SKRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEECSSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred hHhheeECCCChhHHHHHHHHCCEEEEcCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999999999976 579998864 56788888887654
No 68
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=96.93 E-value=0.001 Score=52.95 Aligned_cols=62 Identities=6% Similarity=0.104 Sum_probs=52.3
Q ss_pred EEEEeeCCCccccchhcCccchhHHHhhccc-EEEEEcCC--------c--eEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 42 FQKVNVPPHRYSPLKKVWMDIYTPIFEQMKI-DIRMNLKA--------R--RVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 42 ~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~-~i~id~~~--------~--~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
..++.||++.++.+||++|.+++.+.+.+|+ +|.|.... + .|.|. +++.++.+|+.+|....
T Consensus 68 e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~-----G~~~~v~~Ak~li~~~l 140 (144)
T 2qnd_A 68 EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFV-----GTKDSIANATVLLDYHL 140 (144)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEE-----EEHHHHHHHHHHHHHHH
T ss_pred eEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEE-----eCHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999997 89997532 2 24555 58999999999998764
No 69
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=96.56 E-value=0.0011 Score=55.72 Aligned_cols=62 Identities=23% Similarity=0.264 Sum_probs=52.4
Q ss_pred hhhhhcceecCCCchHHHHHHhhCceEEEcCc--eEEEe-----eCCchHHHHHHHHHHHHcCCCChhh
Q 027782 143 LSRAIGRLSGKGGKTKFAIENATKTRIVIADT--KIHIL-----GSFANIKIARDSLCSLILGSPAGKV 204 (219)
Q Consensus 143 ~~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~--tV~Ii-----G~~~~i~~Ar~aI~~Li~g~~~~~V 204 (219)
+....|-|||++|.+++.|++.+||+|.++.+ .|.+- |+...+.-|++.|..+..|-++...
T Consensus 11 P~~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A 79 (191)
T 1tua_A 11 KPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKA 79 (191)
T ss_dssp CGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred CHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHh
Confidence 45569999999999999999999999999854 57777 8888999999999888877665443
No 70
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.44 E-value=0.0031 Score=50.60 Aligned_cols=52 Identities=23% Similarity=0.228 Sum_probs=46.5
Q ss_pred hhhcceecCCCchHHHHHHhhCceEEEc-----Cce-EEEeeCCchHHHHHHHHHHHH
Q 027782 145 RAIGRLSGKGGKTKFAIENATKTRIVIA-----DTK-IHILGSFANIKIARDSLCSLI 196 (219)
Q Consensus 145 R~~gRIIGk~G~t~~~IE~~Tg~~I~V~-----~~t-V~IiG~~~~i~~Ar~aI~~Li 196 (219)
...++|+|++|.-++.||..|++.|.|. +.+ |.|.|++..=..|+..|..|.
T Consensus 65 ~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~~~~Q~rak~MI~sLA 122 (140)
T 3v69_A 65 RLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLA 122 (140)
T ss_dssp GGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESCHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECCHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999997 233 999999999999999998876
No 71
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.26 E-value=0.00072 Score=66.91 Aligned_cols=61 Identities=31% Similarity=0.371 Sum_probs=9.8
Q ss_pred hhhcceecCCCchHHHHHHhhCceEEEcC-ceEEEeeC-CchHHHHHHHHHHHHcCCCChhhh
Q 027782 145 RAIGRLSGKGGKTKFAIENATKTRIVIAD-TKIHILGS-FANIKIARDSLCSLILGSPAGKVY 205 (219)
Q Consensus 145 R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~-~tV~IiG~-~~~i~~Ar~aI~~Li~g~~~~~VY 205 (219)
..+|.+||++|++++.|++.||+.|.|.+ .+|.|.+. .+.++.|++.|+.+...-..|.+|
T Consensus 579 ~ki~~vig~gg~~i~~i~~~tg~~idi~ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~ 641 (726)
T 4aid_A 579 DKIREVIGSGGKVIREIVATTGAKVDINDDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIY 641 (726)
T ss_dssp -----------------------------------CCSCHHHHHHHHHC--------------
T ss_pred HHHHhhcCCCchhHHHHHHHHCCceeEECCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEE
Confidence 35799999999999999999999999986 46888765 556689999999888654555554
No 72
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=96.25 E-value=0.0083 Score=48.09 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=50.9
Q ss_pred EEEEeeCCCc------cccchhcCccchhHHHhhcccEEEEEcCCc-----------------------eEEEEeCCCCC
Q 027782 42 FQKVNVPPHR------YSPLKKVWMDIYTPIFEQMKIDIRMNLKAR-----------------------RVELKTRADTP 92 (219)
Q Consensus 42 ~~~I~IP~~R------v~~lig~wg~i~k~i~e~~~~~i~id~~~~-----------------------~V~I~~~~~t~ 92 (219)
+.+|+||-+. +|.|+|..|.+.+.|++.+||+|.|.-+.. .|.|.. .
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa----~ 78 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITV----E 78 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEE----C
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEe----c
Confidence 4567777655 899999999999999999999999985320 566765 2
Q ss_pred CH-----HHHHHHHHHHHHHHcC
Q 027782 93 DI-----SNLQKCADFVHAFMLG 110 (219)
Q Consensus 93 dp-----~~i~KA~d~I~Ai~rG 110 (219)
|+ ..+.+|.++|..+..-
T Consensus 79 ~~~~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 79 DAQNRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp SCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CchhhHHHHHHHHHHHHHHHCCC
Confidence 33 3789999999988643
No 73
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.02 E-value=0.0015 Score=64.70 Aligned_cols=66 Identities=12% Similarity=0.242 Sum_probs=12.6
Q ss_pred EEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCCceEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCh
Q 027782 43 QKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDV 113 (219)
Q Consensus 43 ~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~rGF~~ 113 (219)
..+.||+++++.+||.+|++++.|.+.+|++|.|+ ++|.|.|.. .|..++.+|++.|+++..-+.+
T Consensus 572 ~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-ddG~v~I~~----~~~~~~~~A~~~i~~i~~~~~v 637 (726)
T 4aid_A 572 ETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-DDGVVKVSA----SDGAKIKAAIDWIKSITDEAEV 637 (726)
T ss_dssp -------------------------------------------CC----SCHHHHHHHHHC----------
T ss_pred EEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE-CCceEEEEe----CCHHHHHHHHHHHHHHhhhhcC
Confidence 55899999999999999999999999999999998 579999887 5889999999999998754433
No 74
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=95.12 E-value=0.01 Score=47.76 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=68.6
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCCceEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChHHHHHh
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIAL 119 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~rGF~~e~A~~L 119 (219)
.+.-.+.|++..+|+.+|.+|+..+.+++.+|-+|.+- . .+.|| +.||... ++|..-..+
T Consensus 35 ~dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV--------~---~s~d~------~~fI~na---LsPA~V~~V 94 (144)
T 2cxc_A 35 NNRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVV--------E---YSSDL------ERIVKNL---FPGVKIESI 94 (144)
T ss_dssp GTEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEE--------E---CCSSH------HHHHHHH---STTSCEEEE
T ss_pred CCEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEE--------E---cCCCH------HHHHHHh---cCCceEEEE
Confidence 46678899999999999999999999999987777652 2 13565 4455433 455432221
Q ss_pred hhcCcceeeeEEec---ccccccchhhhhhhcceecCCCchHHHHHHhhCceEEEc
Q 027782 120 LRLDELYVESFEIK---DVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIA 172 (219)
Q Consensus 120 l~~Dd~~~e~i~I~---dv~~~~~~~~~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~ 172 (219)
.+. +-+...-....+..++.||++|++.+....+||.+|-|.
T Consensus 95 -----------~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 95 -----------NVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp -----------EEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred -----------EEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 111 000000012334578899999999999999999988654
No 75
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=91.32 E-value=0.8 Score=36.59 Aligned_cols=63 Identities=11% Similarity=0.050 Sum_probs=52.8
Q ss_pred EEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCC--ceEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 43 QKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKA--RRVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 43 ~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~--~~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
....+...-+++|.|..|+-++.|+..+++.|+++.-+ +..+|.- .++|.+-.+|+.+|..++
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtI---fG~~~~Q~rak~MI~sLA 122 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWI---FGPPPFRRDVDRMLTDLA 122 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEE---ESCHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEE---ECCHHHHHHHHHHHHHHH
Confidence 44789999999999999999999999999999998543 3455442 268999999999999875
No 76
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=88.25 E-value=0.045 Score=54.42 Aligned_cols=60 Identities=10% Similarity=0.134 Sum_probs=20.9
Q ss_pred EEeeCCCccccchhcCccchhHHHhhcccEEEEEcCCceEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 44 KVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 44 ~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
.+.||+++++.+||..|++++.|.+.+|+.|.|+. .|.|.|.. .|.....+|++.|+++.
T Consensus 601 ~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-dG~v~Is~----~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 601 TVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-DGTIYIGA----ADGPAAEAARATINGIA 660 (757)
T ss_dssp CC------------------CTTCCCCCSCC---------CCCB----SSHHHHCC---------
T ss_pred EEEEChHHeehcccccceeeehhhHhhCCEEEecC-CceEEEec----CCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999995 78888875 46778888988888875
No 77
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=88.09 E-value=0.095 Score=51.82 Aligned_cols=60 Identities=28% Similarity=0.351 Sum_probs=0.0
Q ss_pred hhcceecCCCchHHHHHHhhCceEEEcCc-eEEEeeC-CchHHHHHHHHHHHHcCCCChhhh
Q 027782 146 AIGRLSGKGGKTKFAIENATKTRIVIADT-KIHILGS-FANIKIARDSLCSLILGSPAGKVY 205 (219)
Q Consensus 146 ~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~-tV~IiG~-~~~i~~Ar~aI~~Li~g~~~~~VY 205 (219)
.++.+||++|++++.|..-||+.|.|.++ +|+|.+. ...++.|++.|+.+...-..|.+|
T Consensus 570 ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~ 631 (723)
T 3cdi_A 570 KIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVY 631 (723)
T ss_dssp --------------------------------------------------------------
T ss_pred HhcccccccceeeeeeehhhCceEEecCCccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEE
Confidence 46799999999999999999999999875 4777654 455677888887776544444444
No 78
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=84.90 E-value=0.18 Score=49.89 Aligned_cols=61 Identities=8% Similarity=0.139 Sum_probs=0.0
Q ss_pred EEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCCceEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 027782 43 QKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFM 108 (219)
Q Consensus 43 ~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~ 108 (219)
..+.||+++++.++|..|++++.|.+.+|+.|.++. .|.|.|.. .|.....+|++.|..+.
T Consensus 562 ~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-dg~v~I~~----~~~~~~~~a~~~i~~i~ 622 (723)
T 3cdi_A 562 HTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-DGTVKIAA----TDGEKAKHAIRRIEEIT 622 (723)
T ss_dssp ------------------------------------------------------------------
T ss_pred EEEEECHHHhcccccccceeeeeeehhhCceEEecC-CccEEEec----CCHHHHHHHHHHHHHHh
Confidence 558899999999999999999999999999999985 68888876 35567788888887764
No 79
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=80.20 E-value=0.13 Score=51.16 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=15.7
Q ss_pred hhhhcceecCCCchHHHHHHhhCceEEEcCc-eEEEeeC-CchHHHHHHHHHHHH
Q 027782 144 SRAIGRLSGKGGKTKFAIENATKTRIVIADT-KIHILGS-FANIKIARDSLCSLI 196 (219)
Q Consensus 144 ~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~-tV~IiG~-~~~i~~Ar~aI~~Li 196 (219)
-..+|.+||++|++++.|..-||+.|.|.++ +|+|-+. ....+.|++.|+.+.
T Consensus 606 ~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 606 VDKIGEVIGPKRQMINQIQEDTGAEITIEDDGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp ---------------CTTCCCCCSCC--------CCCBSSHHHHCC---------
T ss_pred hHHeehcccccceeeehhhHhhCCEEEecCCceEEEecCCHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999999975 4666443 233346777777665
No 80
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=77.83 E-value=1.8 Score=39.51 Aligned_cols=94 Identities=13% Similarity=0.062 Sum_probs=57.9
Q ss_pred CccccchhcCccchhHHHhhc-ccEEEEEcCCceEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChHHHHHh-hhcCccee
Q 027782 50 HRYSPLKKVWMDIYTPIFEQM-KIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIAL-LRLDELYV 127 (219)
Q Consensus 50 ~Rv~~lig~wg~i~k~i~e~~-~~~i~id~~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~rGF~~e~A~~L-l~~Dd~~~ 127 (219)
+-+|+.+|..|..++.|.+.+ |=+|.| -. -+.|| ..||.. -|+|.....+ .-+++-
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDI---------i~--~s~dp------~~fi~n---alsPA~V~~V~~~~~~~-- 306 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDI---------ID--YDDDP------ARFVAN---ALSPAKVVSVSVIDQTA-- 306 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEE---------EE--CCSSH------HHHHHH---HTTTSCCSEEEEEETTT--
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEE---------EE--cCCCH------HHHHHH---hcCCcceeEEEEEcCCC--
Confidence 347888999999999999887 544433 32 12455 233322 2455444333 110111
Q ss_pred eeEEecccccccchhhhhhhcceecCCCchHHHHHHhhCceEEEcC
Q 027782 128 ESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIAD 173 (219)
Q Consensus 128 e~i~I~dv~~~~~~~~~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~ 173 (219)
....+. ......++.|||+|++.+..-.+||.+|-|..
T Consensus 307 ~~a~V~--------V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 344 (366)
T 1k0r_A 307 RAARVV--------VPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 344 (366)
T ss_dssp TEEEEE--------ECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEE
T ss_pred cEEEEE--------EChHHhhhccCCCcHHHHHHHHHHCCeeeeeE
Confidence 011111 12345788899999999999999999998863
No 81
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=77.21 E-value=9 Score=32.11 Aligned_cols=100 Identities=10% Similarity=0.056 Sum_probs=65.6
Q ss_pred ccEEEEEcCCceEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChHHHHHhhhcCcceeeeEEecccccccchhhhhhhcce
Q 027782 71 KIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYVESFEIKDVKTLRGEHLSRAIGRL 150 (219)
Q Consensus 71 ~~~i~id~~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~rGF~~e~A~~Ll~~Dd~~~e~i~I~dv~~~~~~~~~R~~gRI 150 (219)
...+..|..++.+.|+. .|..+.+++++|+.+=.-.. ...++|.+... +...+......+
T Consensus 139 ~g~v~~d~~tN~Liv~g-----~~~~i~~i~~li~~lD~p~~------------~~~~vi~l~~a---~A~dl~~~L~~~ 198 (246)
T 4e9j_A 139 YGHLAAVPSANALIISD-----RSANIARIEDVIRQLDQKGS------------HDYSVINLRYG---WVMDAAEVLNNA 198 (246)
T ss_dssp TSEEEEEGGGTEEEEEE-----CHHHHHHHHHHHHHHHTCSC------------CCEEEEECSSS---CHHHHHHHHHHH
T ss_pred CceEEEcCCCCEEEEEc-----CHHHHHHHHHHHHHhccccc------------cceEEEEecCC---CHHHHHHHHHHH
Confidence 47899999999999884 79999999999999833211 12344555432 223444444444
Q ss_pred ecCCCchHHHHHHhhCceEEEcCc--eEEEeeCCchHHHHHHHHHHH
Q 027782 151 SGKGGKTKFAIENATKTRIVIADT--KIHILGSFANIKIARDSLCSL 195 (219)
Q Consensus 151 IGk~G~t~~~IE~~Tg~~I~V~~~--tV~IiG~~~~i~~Ar~aI~~L 195 (219)
.|.+|.. ...+..|+.++. ++.+.|+.+.++.+++.|..|
T Consensus 199 ~~~~~~~-----~~~~~~v~ad~rtNsliv~~~~~~~~~i~~lI~~L 240 (246)
T 4e9j_A 199 MSRGQAK-----GAAGAQVIADARTNRLIILGPPQARAKLVQLAQSL 240 (246)
T ss_dssp HHHTCST-----TCTTCEEEEEGGGTEEEEESSHHHHHHHHHHHHHH
T ss_pred hccCCCC-----CCCceEEEEeCCCCeEEEECCHHHHHHHHHHHHHh
Confidence 4332211 123467888764 488889999999998888775
No 82
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=72.59 E-value=0.93 Score=36.48 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCChHH-HHHhh-hcCcceeeeEEecccccccchhhhhhhcceecCCCchHHHHHHhhCceEEEc-C
Q 027782 97 LQKCADFVHAFMLGFDVID-AIALL-RLDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIA-D 173 (219)
Q Consensus 97 i~KA~d~I~Ai~rGF~~e~-A~~Ll-~~Dd~~~e~i~I~dv~~~~~~~~~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~-~ 173 (219)
+..+++|+..+...+.++- +.... ..++.+ .|+| .++. -|.|||+.|+|..+||-++..-+.=. +
T Consensus 4 ~~~~~~~L~~il~~m~~~~~~i~v~~~~~~~i--~i~i------~ged----~glLIGK~G~TL~ALQyL~~~~vn~~~~ 71 (152)
T 2pt7_G 4 LHEIKQELKDLFSHLPYKINKVEVSLYEPGVL--LIDI------DGED----SALLIGEKGYRYKALSYLLFNWIHPTYG 71 (152)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEEEEEEEETTEE--EEEE------EEGG----GTTTTCGGGHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEEecCCEE--EEEE------ecCC----cceEECCCCcchHHHHHHHHHHhhhcCC
Confidence 4568888888865444321 13221 112211 1333 3333 69999999999999999985444322 2
Q ss_pred ceEEE-eeCCchH------HHHHHHHHHHHc-CC
Q 027782 174 TKIHI-LGSFANI------KIARDSLCSLIL-GS 199 (219)
Q Consensus 174 ~tV~I-iG~~~~i------~~Ar~aI~~Li~-g~ 199 (219)
-.|.+ ++.|..= +.|+++.+.... |+
T Consensus 72 ~~V~LDve~YRerReetL~~lA~~~A~kV~~tgk 105 (152)
T 2pt7_G 72 YSIRLEISTFLQNQEKVMDTQLQSVIMTVHEVGK 105 (152)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ceEEEEhHHhHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 23444 4555432 266666666653 54
No 83
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=70.30 E-value=1 Score=38.44 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=38.4
Q ss_pred hcceecCCCchHHHHHHhhCceEEEc-Cce--EEE-eeCCchH------HHHHHHHHHHHc-CCC
Q 027782 147 IGRLSGKGGKTKFAIENATKTRIVIA-DTK--IHI-LGSFANI------KIARDSLCSLIL-GSP 200 (219)
Q Consensus 147 ~gRIIGk~G~t~~~IE~~Tg~~I~V~-~~t--V~I-iG~~~~i------~~Ar~aI~~Li~-g~~ 200 (219)
.|+|||+.|+|+.+||-+++.-+.-. +.. |.+ ++.|..= +.|+++...... |.+
T Consensus 103 ~g~LIGk~G~tLdALQyL~~~~vn~~~~~~~rv~LDi~~YR~rR~e~L~~lA~~~A~kV~~tg~~ 167 (225)
T 3gku_A 103 MGILIGKRGQTLDSLQYLVSLVVNKSSSDYIRVKLDTENYRERRKETLETLAKNIAYKVKRTKRS 167 (225)
T ss_dssp HHHCSTTHHHHHHHHHHHHHHHHHHTCSSCCEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred cceeecCCCeEhHHHHHHHHHHHHhcCCCceEEEEecchHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 69999999999999999998766543 333 433 4555443 377777777774 654
No 84
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=60.29 E-value=28 Score=28.85 Aligned_cols=101 Identities=14% Similarity=0.189 Sum_probs=62.8
Q ss_pred cEEEEEcCCceEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChHHHHHhhhcCcceeeeEEecccccccchhhhhhhccee
Q 027782 72 IDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYVESFEIKDVKTLRGEHLSRAIGRLS 151 (219)
Q Consensus 72 ~~i~id~~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~rGF~~e~A~~Ll~~Dd~~~e~i~I~dv~~~~~~~~~R~~gRII 151 (219)
..+..|..++.+.|+. .|..+.+++++|+.+-. . .+...++|.+... +-..+......+.
T Consensus 136 g~v~~d~~~N~Liv~g-----~~~~i~~i~~li~~lD~------~------~~~~~~v~~L~~a---~A~dla~~L~~~~ 195 (241)
T 3ezj_A 136 GNVVNYDPSNVIMLTG-----RASVVERLTEVIQRVDH------A------GNRTEEVIPLDNA---SASEIARVLESLT 195 (241)
T ss_dssp SCEEEEETTTEEEEEE-----EHHHHHHHHHHHHHHHH------H------TTCEEEEEECSSS---CHHHHHHHHHTTC
T ss_pred ceEEEcCCccEEEEEC-----CHHHHHHHHHHHHHhCc------C------CCCceEEEEEecC---CHHHHHHHHHHHh
Confidence 5788888889998885 78999999999998832 1 1123445555432 2345556555665
Q ss_pred cCCCchHHHHHHhhCceEEEcCc--eEEEeeCCchHHHHHHHHHHH
Q 027782 152 GKGGKTKFAIENATKTRIVIADT--KIHILGSFANIKIARDSLCSL 195 (219)
Q Consensus 152 Gk~G~t~~~IE~~Tg~~I~V~~~--tV~IiG~~~~i~~Ar~aI~~L 195 (219)
|..|... -......|+.++. ++.+.|+.+.++.+++.|..|
T Consensus 196 ~~~~~~~---~~~~~~~v~ad~rtNsliv~~~~~~~~~i~~lI~~L 238 (241)
T 3ezj_A 196 KNSGENQ---PATLKSQIVADERTNSVIVSGDPATRDKMRRLIRRL 238 (241)
T ss_dssp ----------------CEEEETTTTEEEEEECHHHHHHHHHHHHHT
T ss_pred cccccCC---CCCCceEEEEcCCcCeEEEECCHHHHHHHHHHHHHh
Confidence 5443210 0122457888875 487889999999988888765
No 85
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=52.66 E-value=27 Score=29.27 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=47.5
Q ss_pred hhhcceecCCCchHHHHHHhhCceEEEcCce-EEEee-CCchHHHHHHHHHHHHcCC----CChhhhHHHHHH
Q 027782 145 RAIGRLSGKGGKTKFAIENATKTRIVIADTK-IHILG-SFANIKIARDSLCSLILGS----PAGKVYSKLRAV 211 (219)
Q Consensus 145 R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~t-V~IiG-~~~~i~~Ar~aI~~Li~g~----~~~~VY~~l~~~ 211 (219)
....|++|++|.....|...++|+|.|.-+- |.|-+ +.+....+-+||.++=..+ ....|-++|+..
T Consensus 157 ~~~~rl~~~~~~~l~~l~~~~~~~i~vG~NG~IWi~~~~~~~~~~~~~ai~~~e~~~~~~~l~~~v~~~l~~~ 229 (235)
T 2z0s_A 157 AKVPRVIGRKMSMLKTLEEKTECKIFVARNGRIHLECPNEDLEAIAVMAIKIIDEEAYTSGLTKRIIKFIEEE 229 (235)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEEETTTEEEEECSCHHHHHHHHHHHHHHHHCSCCTTCHHHHHHHHHHH
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEEeCCCEEEEecCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh
Confidence 4577899999998888888899999998754 66543 3445678888888874333 444555555543
No 86
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=49.26 E-value=39 Score=28.29 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=45.8
Q ss_pred hhcceecCCCchHHHHHHhhCceEEEcCc-eEEEeeCCchHHHHHHHHHHHHcCCCC----hhhhHHHHH
Q 027782 146 AIGRLSGKGGKTKFAIENATKTRIVIADT-KIHILGSFANIKIARDSLCSLILGSPA----GKVYSKLRA 210 (219)
Q Consensus 146 ~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~-tV~IiG~~~~i~~Ar~aI~~Li~g~~~----~~VY~~l~~ 210 (219)
...|++|+++.....|...++|.|.|.-+ .|.|=+.......+-+||.++=..+.. ..|-++|+.
T Consensus 146 ~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~~~ai~~~e~~~~~~~l~~~v~~~l~~ 215 (229)
T 2ba0_A 146 RVPRVIGKKGSMIKLLKSELDVQIVVGQNGLIWVNGDRRKVSIAEEAIYLIEQEAHTEGLTDRVAEFIKR 215 (229)
T ss_dssp GHHHHHCGGGHHHHHHHHHHTCEEEECTTSEEEEESCHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHH
T ss_pred HhHHHhcCCchHHHHhcccCCeEEEEECCcEEEEeCCchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 35588899998899999899999999865 477666555566778888776443332 334445544
No 87
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=46.27 E-value=32 Score=28.68 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=69.0
Q ss_pred ccchhHHHhhcccEEEEEcC-CceEEEEeCCCCCCHHHHHHHHHHHHHHH--cCCChHH---HHHhhh------------
Q 027782 60 MDIYTPIFEQMKIDIRMNLK-ARRVELKTRADTPDISNLQKCADFVHAFM--LGFDVID---AIALLR------------ 121 (219)
Q Consensus 60 g~i~k~i~e~~~~~i~id~~-~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~--rGF~~e~---A~~Ll~------------ 121 (219)
..+.+.|.+.+|..+-++.. +|+|+++. .+|..-..+.+++..+. .||.... .+.+..
T Consensus 32 ~~vl~~la~~~g~nivvdp~V~G~VTl~~----~~pv~~~~~~~~l~~vL~~~gl~~~~~g~v~~V~p~~~~~~~~~~~~ 107 (246)
T 4e9j_A 32 REFIDQISEITGETFVVDPRVKGQVSVVS----KAQLSLSEVYQLFLSVMSTHGFTVVAQGDQARIVPNAEAKTEAGGGQ 107 (246)
T ss_dssp HHHHHHHHHHHCCCEEECTTCCCEEEEEE----EEEEEHHHHHHHHHHHHHHTTEEEEECSSSEEEEECC----------
T ss_pred HHHHHHHHHHhCCeEEECCCCceEEEEEe----CCCCCHHHHHHHHHHHHHHCCCEEEEeCCEEEEeehhhhhccccccc
Confidence 45677788999999999863 68999886 34344445555555443 3433211 000000
Q ss_pred --cCcceeeeEEecccccccchhhhhhhcceecCCCchHHHHHHhhCceEEEcC--ceEEEeeCCchHHHHHHHHHHHH
Q 027782 122 --LDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIAD--TKIHILGSFANIKIARDSLCSLI 196 (219)
Q Consensus 122 --~Dd~~~e~i~I~dv~~~~~~~~~R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~--~tV~IiG~~~~i~~Ar~aI~~Li 196 (219)
.+++...+|.+... +-+.+.+....+..+ ++.|.++. +++.+-|+..+++.+++.|..|=
T Consensus 108 ~~~~~~~t~vi~L~~~---~a~~l~~~L~~lls~------------~g~v~~d~~tN~Liv~g~~~~i~~i~~li~~lD 171 (246)
T 4e9j_A 108 SAPDRLETRVIQVQQS---PVSELIPLIRPLVPQ------------YGHLAAVPSANALIISDRSANIARIEDVIRQLD 171 (246)
T ss_dssp -CCSCCEEEEEECSSS---CHHHHHHHHGGGSCT------------TSEEEEEGGGTEEEEEECHHHHHHHHHHHHHHH
T ss_pred cCCCccEEEEEEecCC---CHHHHHHHHHHhcCC------------CceEEEcCCCCEEEEEcCHHHHHHHHHHHHHhc
Confidence 12333334444322 223344433333322 35788876 45888899999999999998874
No 88
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=43.78 E-value=8.4 Score=33.37 Aligned_cols=29 Identities=24% Similarity=0.150 Sum_probs=25.5
Q ss_pred hhhcceecCCCchHHHHHHhhCceEEEcC
Q 027782 145 RAIGRLSGKGGKTKFAIENATKTRIVIAD 173 (219)
Q Consensus 145 R~~gRIIGk~G~t~~~IE~~Tg~~I~V~~ 173 (219)
...+.-|||+|+|++---.|||.+|-|..
T Consensus 193 ~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 221 (251)
T 2asb_A 193 FQLSLAIGKEGQNARLAARLTGWRIDIRG 221 (251)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred HHhhhhhcCCcCcHHHHHHHHCCEecceE
Confidence 34678899999999999999999998863
No 89
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=35.38 E-value=13 Score=31.84 Aligned_cols=27 Identities=15% Similarity=0.114 Sum_probs=21.2
Q ss_pred hhhcceecCCCchHHH--------HHHhhCceEEE
Q 027782 145 RAIGRLSGKGGKTKFA--------IENATKTRIVI 171 (219)
Q Consensus 145 R~~gRIIGk~G~t~~~--------IE~~Tg~~I~V 171 (219)
..+|-|||++|+.++. ||.+.|+++.+
T Consensus 250 ~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 250 NLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred CcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 4789999999988765 56677777765
No 90
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=34.74 E-value=26 Score=26.20 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHhhh
Q 027782 95 SNLQKCADFVHAFMLGFDVIDAIALLR 121 (219)
Q Consensus 95 ~~i~KA~d~I~Ai~rGF~~e~A~~Ll~ 121 (219)
.+..|++.++.+| ||.++++|+..|+
T Consensus 8 ~SpkK~r~va~~I-rG~~v~eAl~~L~ 33 (110)
T 2ftc_M 8 YSKDKMWYLAKLI-RGMSIDQALAQLE 33 (110)
T ss_pred eCHHHHHHHHHHH-cCCcHHHHHHHHH
Confidence 3567888888866 8999999998876
No 91
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=33.98 E-value=13 Score=33.44 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=24.7
Q ss_pred hhhcceecCCCchHHHHHHhhCceEEEc
Q 027782 145 RAIGRLSGKGGKTKFAIENATKTRIVIA 172 (219)
Q Consensus 145 R~~gRIIGk~G~t~~~IE~~Tg~~I~V~ 172 (219)
...+.-|||+|+|.+---.+||.+|-|.
T Consensus 312 ~~~s~AIGk~G~Nvrla~~Ltg~~idi~ 339 (344)
T 1hh2_P 312 TQLSLAIGKGGQNARLAAKLTGWKIDIK 339 (344)
T ss_dssp TSHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred HHcchhhcCCCccHHHHHHHHCCEecee
Confidence 3467889999999999999999999875
No 92
>3oss_D Type 2 secretion system, secretin GSPD; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=31.07 E-value=44 Score=26.91 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=23.7
Q ss_pred ceEEEcC--ceEEEeeCCchHHHHHHHHHHH
Q 027782 167 TRIVIAD--TKIHILGSFANIKIARDSLCSL 195 (219)
Q Consensus 167 ~~I~V~~--~tV~IiG~~~~i~~Ar~aI~~L 195 (219)
-.|.++. +++.+-|+.++++.+++.|..+
T Consensus 148 g~v~~d~~tN~Liv~d~~~~i~~i~~lI~~l 178 (181)
T 3oss_D 148 GNVVNYDPSNVIMLTGRASVVERLTEVIQRV 178 (181)
T ss_dssp TCEEEEETTTEEEEEEEHHHHHHHHHHHHHH
T ss_pred ceEEEeCCCCEEEEEeCHHHHHHHHHHHHHH
Confidence 4677776 4588889999999999988764
No 93
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=30.55 E-value=15 Score=30.10 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=19.9
Q ss_pred HHHHHH-HHHcCCChHHHHHhhhcCcceeeeEEecccccccchhhhhhhcceecCCCchHHHHHHh
Q 027782 100 CADFVH-AFMLGFDVIDAIALLRLDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENA 164 (219)
Q Consensus 100 A~d~I~-Ai~rGF~~e~A~~Ll~~Dd~~~e~i~I~dv~~~~~~~~~R~~gRIIGk~G~t~~~IE~~ 164 (219)
++-+.. +...|+++++|.+++. .-. ..+.. +...++.|+...+.++.-++|.|+..|+.+
T Consensus 183 ~eal~~a~~~~Gl~~~~a~~~~~-~~~-~gs~~---~~~~~~~~p~~l~~~v~spgG~t~~gl~~l 243 (247)
T 3gt0_A 183 IEAMADAAVLDGMPRNQAYKFAA-QAV-LGSAK---MVLETGIHPGELKDMVCSPGGTTIEAVATL 243 (247)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHH-HHH-HHHHH---HHHHSCC-----------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH-HHH-HHHHH---HHHHcCCCHHHHHHhcCCCCchHHHHHHHH
Confidence 334444 5568999999999885 221 11111 111246789999999999999999988765
No 94
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=30.22 E-value=30 Score=25.85 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHhhh
Q 027782 96 NLQKCADFVHAFMLGFDVIDAIALLR 121 (219)
Q Consensus 96 ~i~KA~d~I~Ai~rGF~~e~A~~Ll~ 121 (219)
+..|++.++.+| ||.++++|+..|+
T Consensus 13 SpkK~r~va~~I-rG~~v~~Al~~L~ 37 (110)
T 1i4j_A 13 SPRKVRLVVDLI-RGKSLEEARNILR 37 (110)
T ss_dssp CHHHHHHHHHHH-TTCBHHHHHHHHH
T ss_pred CHHHHHHHHHHH-cCCcHHHHHHHHH
Confidence 567888888866 8999999999887
No 95
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=29.36 E-value=1.3e+02 Score=24.07 Aligned_cols=74 Identities=11% Similarity=0.057 Sum_probs=55.4
Q ss_pred EEEeeCCCccccchhcCcc-chhHHHhhcccEEEEEcCCceEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChHHHHHhhh
Q 027782 43 QKVNVPPHRYSPLKKVWMD-IYTPIFEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLR 121 (219)
Q Consensus 43 ~~I~IP~~Rv~~lig~wg~-i~k~i~e~~~~~i~id~~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~rGF~~e~A~~Ll~ 121 (219)
+-+.||...+.-++++.+. +.+.|.+.+++.|-+= .+|.|=|.+ .|+.....+...|+..+.+.++++--++++
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG-~NG~IWi~~----~~~~~~~~v~~aI~~~~~~~~~~~~~~~~~ 167 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIG-LNGKIWVKC----EELSNTLACYRTIMECCQKNDTAAFKDIAK 167 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEE-TTTEEEEEC----SSHHHHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEE-CCcEEEEec----CCHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 5688999999999987666 8888888889999776 569999987 577777777677776345667666555543
No 96
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=28.73 E-value=16 Score=28.86 Aligned_cols=39 Identities=5% Similarity=-0.201 Sum_probs=34.3
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEc
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNL 78 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~ 78 (219)
.....+.||++-.+..||+.|...+...+.+|.++.|.+
T Consensus 102 ~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~~ 140 (144)
T 2cxc_A 102 VKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp EEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred cEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCceE
Confidence 456789999999999999999999999999998887753
No 97
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=28.38 E-value=1.7e+02 Score=24.21 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=49.5
Q ss_pred EEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Q 027782 43 QKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAF 107 (219)
Q Consensus 43 ~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai 107 (219)
+-+.+++..+.-++++.+.+...|.+++++++-+= .+|.|-|.+ .++.....+...|+.+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG-~NG~IWi~~----~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVA-RNGRIHLEC----PNEDLEAIAVMAIKII 209 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEE-TTTEEEEEC----SCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEe-CCCEEEEec----CCHHHHHHHHHHHHHH
Confidence 55789999999999999999998888889999876 479999987 5777777777777765
No 98
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=27.06 E-value=37 Score=25.35 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHhhh
Q 027782 95 SNLQKCADFVHAFMLGFDVIDAIALLR 121 (219)
Q Consensus 95 ~~i~KA~d~I~Ai~rGF~~e~A~~Ll~ 121 (219)
.+..|++.++.+| ||.++++|+..|+
T Consensus 12 ~S~kK~r~va~~I-rG~~v~~Al~~L~ 37 (110)
T 3r8s_S 12 SSAQKVRLVADLI-RGKKVSQALDILT 37 (110)
T ss_dssp SCHHHHHHHHHHH-TTCBHHHHHHHHH
T ss_pred CcHHHHHHHHHHH-cCCcHHHHHHHHh
Confidence 3567888888865 8999999998876
No 99
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=26.44 E-value=57 Score=28.48 Aligned_cols=100 Identities=15% Similarity=0.089 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHHH-cCCCh-----HHHHHhhhcCcceeeeEEecccccc--cchhhhhhhcceecCCCchHHHHHHh
Q 027782 93 DISNLQKCADFVHAFM-LGFDV-----IDAIALLRLDELYVESFEIKDVKTL--RGEHLSRAIGRLSGKGGKTKFAIENA 164 (219)
Q Consensus 93 dp~~i~KA~d~I~Ai~-rGF~~-----e~A~~Ll~~Dd~~~e~i~I~dv~~~--~~~~~~R~~gRIIGk~G~t~~~IE~~ 164 (219)
+|..+..+-+.+++.. +||++ ++++.+++ ++.+.... .-|-+.+.-|+++|-|=.-.=.+..+
T Consensus 75 ~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD---------~ls~~A~~iGAVNTi~~~~g~l~G~NTD~~Gf~~~L 145 (315)
T 3tnl_A 75 GDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLD---------KLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRAL 145 (315)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECTTSTTTGGGGCS---------EECHHHHHHTCCSEEEEETTEEEEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH---------hcCHHHHHhCccceEEecCCEEEEeCCCHHHHHHHH
Confidence 3566666666666643 56543 56666664 12111110 01223334588998776655444444
Q ss_pred hCceEEEcCceEEEeeCCchHHHHHHHHHHHH-cCCCChhh
Q 027782 165 TKTRIVIADTKIHILGSFANIKIARDSLCSLI-LGSPAGKV 204 (219)
Q Consensus 165 Tg~~I~V~~~tV~IiG~~~~i~~Ar~aI~~Li-~g~~~~~V 204 (219)
....+.+.++++.|+|.- .++|-++..|. .|..+=+|
T Consensus 146 ~~~~~~l~gk~~lVlGaG---G~g~aia~~L~~~Ga~~V~i 183 (315)
T 3tnl_A 146 KEAGHDIIGKKMTICGAG---GAATAICIQAALDGVKEISI 183 (315)
T ss_dssp HHTTCCCTTSEEEEECCS---HHHHHHHHHHHHTTCSEEEE
T ss_pred HHcCCCccCCEEEEECCC---hHHHHHHHHHHHCCCCEEEE
Confidence 333455778999999973 56777776666 36533333
No 100
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=25.96 E-value=71 Score=25.69 Aligned_cols=52 Identities=12% Similarity=-0.056 Sum_probs=35.6
Q ss_pred hcceecCCCc-hHHHHHHhhCceEEEcCce-EEEeeCCc-hHHHHHHHHHHHHcC
Q 027782 147 IGRLSGKGGK-TKFAIENATKTRIVIADTK-IHILGSFA-NIKIARDSLCSLILG 198 (219)
Q Consensus 147 ~gRIIGk~G~-t~~~IE~~Tg~~I~V~~~t-V~IiG~~~-~i~~Ar~aI~~Li~g 198 (219)
.-|++|+.|. .+..|...++++|.|.-+- |.|=+.-. ..-.+-+||.++.+.
T Consensus 102 v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~v~~aI~~~~~~ 156 (175)
T 2ja9_A 102 ARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQK 156 (175)
T ss_dssp HHHHHHCTTCCHHHHHHTTCCCEEEEETTTEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred hhHHhcCCCcchHHhhhccCCeEEEEECCcEEEEecCCHHHHHHHHHHHHHHhcc
Confidence 4577777777 8899999999999998764 66543322 233555788874333
No 101
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=30.87 E-value=15 Score=27.43 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=22.2
Q ss_pred cCce--EEEeeCCchHHHHHHHHHHHHc
Q 027782 172 ADTK--IHILGSFANIKIARDSLCSLIL 197 (219)
Q Consensus 172 ~~~t--V~IiG~~~~i~~Ar~aI~~Li~ 197 (219)
+|++ |.+.|.|...+.|+.|+..|=.
T Consensus 59 nGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 59 NGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 4554 8889999999999999999863
No 102
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=23.84 E-value=65 Score=28.11 Aligned_cols=72 Identities=13% Similarity=0.038 Sum_probs=55.8
Q ss_pred EEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCCceEEEEeCCCCCCHHHHHHHHHHHHHHHcCCChHHHHHhh
Q 027782 43 QKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALL 120 (219)
Q Consensus 43 ~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~rGF~~e~A~~Ll 120 (219)
+-+.||...+.-|+++.+.+++.|.+.+++.|-+= .+|.|=|.+ .++.....+...|+++ ...+.++--+++
T Consensus 212 ~l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~vG-~NG~IWI~~----~~~~~~~~i~~aI~~~-e~~~~~q~~~~~ 283 (289)
T 2nn6_G 212 LLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFG-MNGRIWVKA----KTIQQTLILANILEAC-EHMTSDQRKQIF 283 (289)
T ss_dssp EEECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEEE-TTTEEEECC----SSHHHHHHHHHHHHHT-TSSCTTTHHHHH
T ss_pred EEEEEChHHhhhhhcCchhHHHHhcccCCeEEEEE-CCcEEEEec----CChhHHHHHHHHHHHh-hcCCHHHHHHHH
Confidence 45788888888889999999888888889999776 469999986 5777888888888876 556666555544
No 103
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=23.83 E-value=51 Score=28.43 Aligned_cols=40 Identities=15% Similarity=-0.073 Sum_probs=35.8
Q ss_pred eEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCC
Q 027782 41 QFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKA 80 (219)
Q Consensus 41 ~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~ 80 (219)
....+.||++..+..||+.|...+.....+|.++.|.+.+
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 4678999999999999999999999999999999887543
No 104
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=23.25 E-value=67 Score=21.30 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCChHHHHHhhh
Q 027782 101 ADFVHAFMLGFDVIDAIALLR 121 (219)
Q Consensus 101 ~d~I~Ai~rGF~~e~A~~Ll~ 121 (219)
..+=+.+..||+.++|.+-|.
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~ 33 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALE 33 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 466678889999999998886
No 105
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=23.22 E-value=30 Score=29.57 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=21.0
Q ss_pred hhhcceecCCCchHHH--------HHHhhCceEEE
Q 027782 145 RAIGRLSGKGGKTKFA--------IENATKTRIVI 171 (219)
Q Consensus 145 R~~gRIIGk~G~t~~~--------IE~~Tg~~I~V 171 (219)
..++.|||++|..++. ||.+.|+++.+
T Consensus 240 ~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 240 SQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 4689999999998765 56677777765
No 106
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=22.32 E-value=44 Score=21.27 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=18.2
Q ss_pred cCCCChhhhHHHHHHHHHHhhc
Q 027782 197 LGSPAGKVYSKLRAVTARLAER 218 (219)
Q Consensus 197 ~g~~~~~VY~~l~~~~~~~~~~ 218 (219)
.|-..++|++.+.+...++++.
T Consensus 41 lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 41 CGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp HTSCHHHHHHHHHHHHHHHHC-
T ss_pred HCcCHHHHHHHHHHHHHHHHHH
Confidence 3778899999999999998865
No 107
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=22.07 E-value=42 Score=26.13 Aligned_cols=26 Identities=35% Similarity=0.286 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHhhh
Q 027782 95 SNLQKCADFVHAFMLGFDVIDAIALLR 121 (219)
Q Consensus 95 ~~i~KA~d~I~Ai~rGF~~e~A~~Ll~ 121 (219)
.+..|++.++.+| ||.++++|+..|+
T Consensus 33 vSpkK~r~Va~~I-RG~~v~eAl~~L~ 58 (134)
T 2zjr_P 33 MSPRKVRLVVDVI-RGKSVQDAEDLLR 58 (134)
T ss_dssp SCHHHHHHHHHHS-TTSBHHHHHHHHH
T ss_pred CcHHHHHHHHHHH-cCCcHHHHHHHHH
Confidence 3568899888866 8999999998876
No 108
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=21.16 E-value=59 Score=29.52 Aligned_cols=41 Identities=15% Similarity=-0.070 Sum_probs=36.5
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCC
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKA 80 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~ 80 (219)
.....+.||++..+..||+.|...+.....+|.+|.|.+.+
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 34688999999999999999999999999999999887654
No 109
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=20.99 E-value=12 Score=32.00 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=33.6
Q ss_pred hhcceecCCCchHHHHHHhhCceEEEcCce-EEEe-eCCchHHHHHHHHHHHHcCCCC-----hhhhHHHHHH
Q 027782 146 AIGRLSGKGGKTKFAIENATKTRIVIADTK-IHIL-GSFANIKIARDSLCSLILGSPA-----GKVYSKLRAV 211 (219)
Q Consensus 146 ~~gRIIGk~G~t~~~IE~~Tg~~I~V~~~t-V~Ii-G~~~~i~~Ar~aI~~Li~g~~~-----~~VY~~l~~~ 211 (219)
...|++|++|..+..|...++|.|.|.-+- |.|= ++......+-+||.++= -..| ..|-.+|+..
T Consensus 165 ~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~~~~aI~~~e-~~~~~~~l~~~v~~~l~~~ 236 (251)
T 2je6_I 165 KVPRVIGKNKSMYETLTSKSGCSIFVANNGRIWATCPSRFSEEILIEAIRKIE-NESHIKGLTDRIKQFIEEK 236 (251)
T ss_dssp GHHHHHCGGGHHHHHHHTTC---CEECTTSEEEC-----CTTCCTHHHHTTTT-TTTTCC-------------
T ss_pred HhHHHhcCcchHHHHhcccCCeEEEEECCcEEEEeCCCHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHh
Confidence 467889999998999988899999998765 6643 23445556666775542 2223 4455555543
No 110
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=20.44 E-value=2.2e+02 Score=21.83 Aligned_cols=109 Identities=10% Similarity=0.102 Sum_probs=56.8
Q ss_pred cCccchhHHHhhcccEEEEEcCCceEEEEeCCCCCCHHHHHHHHHHHHHHHcC--CChHHHHHhhhcCcceeeeEEeccc
Q 027782 58 VWMDIYTPIFEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLG--FDVIDAIALLRLDELYVESFEIKDV 135 (219)
Q Consensus 58 ~wg~i~k~i~e~~~~~i~id~~~~~V~I~~~~~t~dp~~i~KA~d~I~Ai~rG--F~~e~A~~Ll~~Dd~~~e~i~I~dv 135 (219)
.|.+....+....|+....+ .+.+.|.+... . .+.. ..+..+ |+ +...-..+++..++|.+...
T Consensus 50 ~~~~~l~~vl~~~gl~~~~~--g~vl~V~~~~~---~---~~~~---~~~~~~~~~~---~~~~~~~~~~~~~v~~L~y~ 115 (175)
T 2y3m_A 50 DLDQLFRSVAKIKQLDLWQE--NGIYYFTKGDT---N---TKFA---GKMEEPFPLS---LPMAEEPAQLNTATIKLHFA 115 (175)
T ss_dssp CHHHHHHHHHHHHTCCCEEE--EEEEEEEC-------------------------------------CCCEEEEEECSSS
T ss_pred CHHHHHHHHHHHCCceEEEE--CCEEEEEchHH---H---hhHH---HHHhhhcccc---cccccccCCcEEEEEEEeCC
Confidence 46666677777778877754 34555665321 0 0000 000000 00 00011224566667776543
Q ss_pred ccccchhhhhhhc----ceecCCCchHHHHHHhhCceEEEcC--ceEEEeeCCchHHHHHHHHHHH
Q 027782 136 KTLRGEHLSRAIG----RLSGKGGKTKFAIENATKTRIVIAD--TKIHILGSFANIKIARDSLCSL 195 (219)
Q Consensus 136 ~~~~~~~~~R~~g----RIIGk~G~t~~~IE~~Tg~~I~V~~--~tV~IiG~~~~i~~Ar~aI~~L 195 (219)
. -+.+..... .+++++| .|+++. +++.+-|+.++++.+++.|..|
T Consensus 116 ~---a~~~~~~l~~~~~~l~~~~g------------~v~~d~~tN~liv~~~~~~i~~i~~li~~l 166 (175)
T 2y3m_A 116 K---ASEVMKSLTGGSGSLLSPNG------------SITFDDRSNLLLIQDEPRSVRNIKKLIKEL 166 (175)
T ss_dssp C---HHHHHHHHHCSSSCSSCTTC------------EEEEETTTTEEEEEECHHHHHHHHHHHHHH
T ss_pred C---HHHHHHHHhhCcccccCCCc------------eEEEECCCCEEEEEcCHHHHHHHHHHHHHh
Confidence 2 234444333 4555443 688886 4588899999999999998876
No 111
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=20.28 E-value=75 Score=28.47 Aligned_cols=41 Identities=15% Similarity=-0.040 Sum_probs=35.9
Q ss_pred eeEEEEeeCCCccccchhcCccchhHHHhhcccEEEEEcCC
Q 027782 40 VQFQKVNVPPHRYSPLKKVWMDIYTPIFEQMKIDIRMNLKA 80 (219)
Q Consensus 40 ~~~~~I~IP~~Rv~~lig~wg~i~k~i~e~~~~~i~id~~~ 80 (219)
.....+.||++-.+..||+.|...+.....+|.++.|.+.+
T Consensus 302 ~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~~ 342 (344)
T 1hh2_P 302 NKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPIM 342 (344)
T ss_dssp TTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEECC
T ss_pred CCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeecc
Confidence 34688999999999999999999999999999998886543
Done!