Query 027783
Match_columns 219
No_of_seqs 152 out of 1010
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 01:57:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqc_A Hypothetical 13.2 kDa p 16.5 66 0.0023 22.2 1.7 27 29-70 31-57 (118)
2 2qho_B E3 ubiquitin-protein li 15.6 1.3E+02 0.0046 18.1 2.7 19 128-146 17-35 (53)
3 2hwn_E A kinase binding peptid 8.9 1.9E+02 0.0065 14.7 1.6 11 27-37 10-20 (26)
4 2kii_A Putative uncharacterize 8.7 4.8E+02 0.016 19.5 4.8 70 77-152 3-78 (181)
5 1p58_D Envelope protein M; fla 8.5 3.2E+02 0.011 17.8 3.1 33 6-39 30-62 (75)
6 2jp3_A FXYD domain-containing 6.9 2.8E+02 0.0095 17.8 2.1 39 53-91 5-45 (67)
7 1fs1_B SKP1, cyclin A/CDK2-ass 6.9 4.5E+02 0.015 18.7 3.7 32 116-147 106-139 (141)
8 3c0t_B Mediator of RNA polymer 6.6 1.9E+02 0.0065 15.3 1.0 14 186-199 11-24 (33)
9 3cx5_I Cytochrome B-C1 complex 5.8 4.4E+02 0.015 16.6 2.7 22 6-27 4-25 (65)
10 1z2z_A Probable tRNA pseudouri 5.3 2E+02 0.0068 25.2 1.0 30 166-195 258-288 (446)
No 1
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=16.46 E-value=66 Score=22.15 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=17.8
Q ss_pred HHHHHHHhchhhhhhhhhhhcccccccccccchHHHHHHHHH
Q 027783 29 GVGDIAAQYITHATAKSRLQLSVTDADEKFKVNWKRVAVTSS 70 (219)
Q Consensus 29 ~~gD~laQ~~~~~~~~~~~~~~~~~~~~~~~~D~~Rt~~~~~ 70 (219)
.+-|++||.-.... ..++..|++++.+
T Consensus 31 sledilaqfeis~~---------------sayniqr~l~~ic 57 (118)
T 2vqc_A 31 TLEDILAQFEISVP---------------SAYNIQRALKAIC 57 (118)
T ss_dssp CHHHHHHHHCCCHH---------------HHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccc---------------hHhHHHHHHHHHH
Confidence 35688888766543 3577777777764
No 2
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=15.61 E-value=1.3e+02 Score=18.13 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=15.9
Q ss_pred HHhhCCCChHHHHHHHHHh
Q 027783 128 MGFSTGKNVAQVKEDLKRD 146 (219)
Q Consensus 128 ~~~leg~s~~~~~~~lk~~ 146 (219)
..+|+|+|.+-|.+++++.
T Consensus 17 q~VLqgksR~vIirELqrT 35 (53)
T 2qho_B 17 QVVLQGKSRSVIIRELQRT 35 (53)
T ss_dssp HHHSTTCCHHHHHHHHHHT
T ss_pred HHHhcCCcHHHHHHHHHHh
Confidence 4689999998899988874
No 3
>2hwn_E A kinase binding peptide; PKA, AKAP, dimerization/docking, D/D, regulatory subunit, TR; 1.60A {Rattus norvegicus}
Probab=8.88 E-value=1.9e+02 Score=14.70 Aligned_cols=11 Identities=27% Similarity=0.163 Sum_probs=8.1
Q ss_pred HHHHHHHHHhc
Q 027783 27 LWGVGDIAAQY 37 (219)
Q Consensus 27 l~~~gD~laQ~ 37 (219)
.+.+.|++.|.
T Consensus 10 kmiv~dvmqq~ 20 (26)
T 2hwn_E 10 KMIVSDVMQQC 20 (26)
T ss_pred HHHHHHHHHHH
Confidence 45678888875
No 4
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=8.74 E-value=4.8e+02 Score=19.49 Aligned_cols=70 Identities=10% Similarity=0.043 Sum_probs=46.9
Q ss_pred chhHHHHHHHHHHHhhhhcCCCCCcHHHHHHHHHHhhhhhhhhH------HHHHHHHHHhhCCCChHHHHHHHHHhhHHH
Q 027783 77 GPVGHFWYEGLDRFIRLKLQLPPKSARFVATKVAMDSIIFGPLD------LFVFFTYMGFSTGKNVAQVKEDLKRDFLPA 150 (219)
Q Consensus 77 gP~~h~wy~~Ld~~~~~~~~~~~~~~~~v~~Kvl~DQ~v~aP~~------~~~f~~~~~~leg~s~~~~~~~lk~~~~~~ 150 (219)
|-+...|..+++..++. ..|..+..+.-++.-++.|.. +.-.+...+-.-|.+.+++++.+-+.+...
T Consensus 3 G~I~~~~~~~v~~~~G~------e~w~~i~~~a~~~~~~f~~~~~Y~D~~~~~lv~a~s~~~g~~~~~ll~~fG~~~~~~ 76 (181)
T 2kii_A 3 GIIFNVLEDMVVAQCGM------SVWNELLEKHAPKDRVYVSAKSYAESELFSIVQDVAQRLNMPIQDVVKAFGQFLFNG 76 (181)
T ss_dssp CHHHHHHHHHHHHHTCH------HHHHHHHHHHCCSSCCCCSSCCTTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHcCH------HHHHHHHHHhCCCCCceeeccccCHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 56677888888888853 356666777766666665542 344444455567899999999887766554
Q ss_pred HH
Q 027783 151 LV 152 (219)
Q Consensus 151 l~ 152 (219)
+.
T Consensus 77 ~~ 78 (181)
T 2kii_A 77 LA 78 (181)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 5
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=8.49 E-value=3.2e+02 Score=17.83 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=26.1
Q ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHHHHhchh
Q 027783 6 KWYQNCLAVHPLKTQVISSGFLWGVGDIAAQYIT 39 (219)
Q Consensus 6 ~~Y~~~l~~~Pl~tk~~ts~~l~~~gD~laQ~~~ 39 (219)
..-+++.-|||..+-++. .+...+|+...|++.
T Consensus 30 ~kvE~WilrNp~~al~a~-~~~w~lG~~~~Qrvi 62 (75)
T 1p58_D 30 QRIETWILRHPGFTIMAA-ILAYTIGTTHFQRVL 62 (75)
T ss_pred HHHHHHHHHChHHHHHHH-HHHHHHcCChHHHHH
Confidence 445667889999987777 777888888888775
No 6
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=6.93 E-value=2.8e+02 Score=17.80 Aligned_cols=39 Identities=10% Similarity=0.042 Sum_probs=20.4
Q ss_pred cccccccchHHH--HHHHHHhcccccchhHHHHHHHHHHHh
Q 027783 53 DADEKFKVNWKR--VAVTSSFGFGFVGPVGHFWYEGLDRFI 91 (219)
Q Consensus 53 ~~~~~~~~D~~R--t~~~~~~G~~~~gP~~h~wy~~Ld~~~ 91 (219)
+++.++.+||.+ ..-+.+.+.+|...+....-+..-..+
T Consensus 5 ~e~dpF~YDY~tLRigGLifA~vLfi~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 5 DKGSPFYYDWESLQLGGLIFGGLLCIAGIALALSGKCKCRR 45 (67)
T ss_dssp STTSGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred ccCCCcccchHHheecchhhHHHHHHHHHHHHHcCcccccC
Confidence 445678899874 444444444444444444444444444
No 7
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=6.89 E-value=4.5e+02 Score=18.74 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHhhCCCChHHHHHH--HHHhh
Q 027783 116 FGPLDLFVFFTYMGFSTGKNVAQVKED--LKRDF 147 (219)
Q Consensus 116 ~aP~~~~~f~~~~~~leg~s~~~~~~~--lk~~~ 147 (219)
.-++.-.+--.+...++|++.+++.+. +++||
T Consensus 106 I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~ 139 (141)
T 1fs1_B 106 IKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 139 (141)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHTC-----
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCC
Confidence 334433333344567799999888774 34444
No 8
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=6.63 E-value=1.9e+02 Score=15.33 Aligned_cols=14 Identities=36% Similarity=0.517 Sum_probs=10.4
Q ss_pred HHHHHhhhcccchh
Q 027783 186 SAFLSWVEQQKDAA 199 (219)
Q Consensus 186 ~~yLS~~~~~~~~~ 199 (219)
+-+||++++.+.++
T Consensus 11 tdilsfmksgkraa 24 (33)
T 3c0t_B 11 TDILSFMKSGKRAA 24 (33)
T ss_dssp HHHHHHHHHCCCCG
T ss_pred HHHHHHHHcchHHH
Confidence 55789998887654
No 9
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=5.84 E-value=4.4e+02 Score=16.63 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=14.5
Q ss_pred HHHHHHHhhCchHHHHHHHHHH
Q 027783 6 KWYQNCLAVHPLKTQVISSGFL 27 (219)
Q Consensus 6 ~~Y~~~l~~~Pl~tk~~ts~~l 27 (219)
..|+..++|+..-.-++..|.+
T Consensus 4 ~iY~~~fkRnSty~~~I~~gaf 25 (65)
T 3cx5_I 4 SLYKTFFKRNAVFVGTIFAGAF 25 (65)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHH
Confidence 4799999998854444444443
No 10
>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei}
Probab=5.32 E-value=2e+02 Score=25.24 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=25.1
Q ss_pred eeeeccccchhhhhH-HHHHHHHHHHhhhcc
Q 027783 166 FRYVPVRYQLLYVNI-FCLLDSAFLSWVEQQ 195 (219)
Q Consensus 166 F~~vP~~~Rvlf~n~-v~~~W~~yLS~~~~~ 195 (219)
+.-+|...|.+|++. -|.+||-.+|-.-..
T Consensus 258 ~~~ipr~lr~myv~AyQS~lfN~~lS~Ri~~ 288 (446)
T 1z2z_A 258 FRVLPQNLYRMFVHGYQSYIYNIILCRRIEA 288 (446)
T ss_dssp GTTSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457999999888865 799999999987764
Done!