Query 027783
Match_columns 219
No_of_seqs 152 out of 1010
Neff 7.7
Searched_HMMs 13730
Date Tue Mar 26 01:57:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027783.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027783hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 26.4 15 0.0011 21.6 1.7 27 29-70 22-48 (70)
2 d1xrda1 f.3.1.1 (A:1-52) Light 17.9 41 0.003 19.1 2.4 25 59-83 7-31 (52)
3 d1wfza_ d.224.1.2 (A:) Iron-su 13.1 1.5E+02 0.011 19.8 4.8 73 116-208 58-130 (130)
4 d2v9va1 a.4.5.35 (A:377-437) C 10.6 55 0.004 18.4 1.4 11 32-42 5-15 (61)
5 d1h2vc1 a.118.1.14 (C:29-290) 9.2 3.3E+02 0.024 19.8 6.2 70 102-171 36-114 (262)
6 d1ee8a1 a.156.1.2 (A:122-210) 8.4 54 0.0039 20.4 0.9 18 105-122 24-41 (89)
7 d2g7la2 a.121.1.1 (A:87-230) P 8.3 1.1E+02 0.0077 20.0 2.6 23 2-24 8-30 (144)
8 d1r2za1 a.156.1.2 (A:135-228) 8.2 52 0.0038 20.7 0.8 25 105-129 24-50 (94)
9 d1k3xa1 a.156.1.2 (A:125-213) 8.2 44 0.0032 20.8 0.4 18 105-122 28-45 (89)
10 d1tdza1 a.156.1.2 (A:132-219) 8.1 49 0.0035 20.6 0.6 18 105-122 24-41 (88)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=26.40 E-value=15 Score=21.58 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=18.0
Q ss_pred HHHHHHHhchhhhhhhhhhhcccccccccccchHHHHHHHHH
Q 027783 29 GVGDIAAQYITHATAKSRLQLSVTDADEKFKVNWKRVAVTSS 70 (219)
Q Consensus 29 ~~gD~laQ~~~~~~~~~~~~~~~~~~~~~~~~D~~Rt~~~~~ 70 (219)
.+-|++||.-.... ..++..|++++.+
T Consensus 22 ~ledilaqfeis~~---------------~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVP---------------SAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHH---------------HHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccc---------------hHhHHHHHHHHHH
Confidence 35788888766543 3577777777654
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=17.90 E-value=41 Score=19.11 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=16.7
Q ss_pred cchHHHHHHHHHhcccccchhHHHH
Q 027783 59 KVNWKRVAVTSSFGFGFVGPVGHFW 83 (219)
Q Consensus 59 ~~D~~Rt~~~~~~G~~~~gP~~h~w 83 (219)
-+|.+|++.-.....+..+-..|+-
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfi 31 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFI 31 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799998765555555566666664
No 3
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=13.08 E-value=1.5e+02 Score=19.77 Aligned_cols=73 Identities=12% Similarity=-0.052 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHHhhCCCChHHHHHHHHHhhHHHHHhccccchHhhhhheeeeccccchhhhhHHHHHHHHHHHhhhcc
Q 027783 116 FGPLDLFVFFTYMGFSTGKNVAQVKEDLKRDFLPALVLEGGIWPIVQVANFRYVPVRYQLLYVNIFCLLDSAFLSWVEQQ 195 (219)
Q Consensus 116 ~aP~~~~~f~~~~~~leg~s~~~~~~~lk~~~~~~l~~~~~vWp~~q~inF~~vP~~~Rvlf~n~v~~~W~~yLS~~~~~ 195 (219)
.+.+.+++--++..++.|++++++.+ +.++.. .+.+. +|+. =..|..+.|.++-.-++.-
T Consensus 58 GC~is~AsaS~~tel~~Gkt~~ea~~-i~~~~i------------~~~l~---l~p~----R~~CA~La~~aL~~Al~~y 117 (130)
T d1wfza_ 58 GCGSAIASSSLATEWVKGKTVEEALT-IKNTDI------------AKELC---LPPV----KLHCSMLAEDAIKAALADY 117 (130)
T ss_dssp SCHHHHHHHHHHHHHHTTSBHHHHHH-CCHHHH------------HHHHT---CCGG----GHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHhccCHHHHHh-cCcHHH------------HHHcC---CCcc----hhhHHHHHHHHHHHHHHHH
Confidence 34555666666777889999988865 333211 22232 2332 3578889999999888887
Q ss_pred cchhhhhhhhccc
Q 027783 196 KDAAWKQWFTSFH 208 (219)
Q Consensus 196 ~~~~~~~~~~~~~ 208 (219)
....+++..|+.+
T Consensus 118 ~~k~~~~~~p~~~ 130 (130)
T d1wfza_ 118 KLKQESKSGPSSG 130 (130)
T ss_dssp HHHHHCSSCSCCC
T ss_pred HHhccCccCCCCC
Confidence 7777777777653
No 4
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=10.61 E-value=55 Score=18.35 Aligned_cols=11 Identities=36% Similarity=0.338 Sum_probs=8.5
Q ss_pred HHHHhchhhhh
Q 027783 32 DIAAQYITHAT 42 (219)
Q Consensus 32 D~laQ~~~~~~ 42 (219)
.++||.+.+.+
T Consensus 5 kilaqiiqehr 15 (61)
T d2v9va1 5 KILAQIIQEHR 15 (61)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHHHHH
Confidence 47889988765
No 5
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.17 E-value=3.3e+02 Score=19.81 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhCCCChH---HHHHHHHHhhHHHHHh-ccc-----cchHhhhhheeeecc
Q 027783 102 ARFVATKVAMDSIIFGPLDLFVFFTYMGFSTGKNVA---QVKEDLKRDFLPALVL-EGG-----IWPIVQVANFRYVPV 171 (219)
Q Consensus 102 ~~~v~~Kvl~DQ~v~aP~~~~~f~~~~~~leg~s~~---~~~~~lk~~~~~~l~~-~~~-----vWp~~q~inF~~vP~ 171 (219)
.+..+.+.+++.....|..+..|=+..++++-+..+ ++.+++.+.+-..+.. +|. +-=++++.|+.+++.
T Consensus 36 ~~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~~l~~~~~~~~~~llrFla~L~n~~Vv~~ 114 (262)
T d1h2vc1 36 YKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA 114 (262)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCH
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCCCcH
Confidence 356677888888888898888887778888766532 4444555555555444 221 234566666666655
No 6
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=8.41 E-value=54 Score=20.41 Aligned_cols=18 Identities=6% Similarity=0.038 Sum_probs=14.7
Q ss_pred HHHHHHHhhhhhhhhHHH
Q 027783 105 VATKVAMDSIIFGPLDLF 122 (219)
Q Consensus 105 v~~Kvl~DQ~v~aP~~~~ 122 (219)
.++.+++||-+++-+.+.
T Consensus 24 ~ik~~LlDQ~~iaGiGN~ 41 (89)
T d1ee8a1 24 PLKALLLDQRLAAGVGNI 41 (89)
T ss_dssp BHHHHHHHSSSSTTCCHH
T ss_pred cHHHHHHhccccCCCCcH
Confidence 478899999999988543
No 7
>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.30 E-value=1.1e+02 Score=20.03 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHhhCchHHHHHHH
Q 027783 2 LKLWKWYQNCLAVHPLKTQVISS 24 (219)
Q Consensus 2 ~~l~~~Y~~~l~~~Pl~tk~~ts 24 (219)
+.+...|.+.+.+||-+...+..
T Consensus 8 r~~a~~~r~~l~~HP~~~~l~~~ 30 (144)
T d2g7la2 8 RAVLTSYTLVLFAHPQLARSALV 30 (144)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHhc
Confidence 45678899999999998876654
No 8
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.18 E-value=52 Score=20.74 Aligned_cols=25 Identities=4% Similarity=0.013 Sum_probs=17.4
Q ss_pred HHHHHHHhhhhhhhhHH--HHHHHHHH
Q 027783 105 VATKVAMDSIIFGPLDL--FVFFTYMG 129 (219)
Q Consensus 105 v~~Kvl~DQ~v~aP~~~--~~f~~~~~ 129 (219)
.++.+++||-+++-+.+ ..=+.+.+
T Consensus 24 ~ik~~LlDQ~~~aGiGN~y~~EiLf~a 50 (94)
T d1r2za1 24 SVKALLLDQTVVAGFGNIYVDESLFRA 50 (94)
T ss_dssp BHHHHHHCTTTSSSCCHHHHHHHHHHH
T ss_pred cHHHHHHhccccCCcccHHHHHHHHHH
Confidence 47889999999998843 33344443
No 9
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=8.16 E-value=44 Score=20.80 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=14.9
Q ss_pred HHHHHHHhhhhhhhhHHH
Q 027783 105 VATKVAMDSIIFGPLDLF 122 (219)
Q Consensus 105 v~~Kvl~DQ~v~aP~~~~ 122 (219)
.++.+++||-+++-+.+.
T Consensus 28 ~Ik~~LlDQ~~~aGIGN~ 45 (89)
T d1k3xa1 28 QFAGLLLDQAFLAGLGNY 45 (89)
T ss_dssp CHHHHTTCTTTSBTCCHH
T ss_pred hHHHHHhcCccccccCcH
Confidence 478899999999998543
No 10
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=8.12 E-value=49 Score=20.63 Aligned_cols=18 Identities=6% Similarity=0.071 Sum_probs=14.9
Q ss_pred HHHHHHHhhhhhhhhHHH
Q 027783 105 VATKVAMDSIIFGPLDLF 122 (219)
Q Consensus 105 v~~Kvl~DQ~v~aP~~~~ 122 (219)
.++.+++||-+++-+.+.
T Consensus 24 ~ik~~LldQ~~iaGIGNi 41 (88)
T d1tdza1 24 KIKPYLLEQTLVAGLGNI 41 (88)
T ss_dssp BHHHHHHTSSSSSCCCHH
T ss_pred cHHHHHHhccccCCcChH
Confidence 478899999999888543
Done!