Query 027784
Match_columns 219
No_of_seqs 123 out of 230
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 01:58:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_T Photosystem II reaction 25.3 80 0.0027 19.8 3.4 22 3-24 2-23 (32)
2 3eyy_A Putative iron uptake re 16.0 37 0.0013 26.1 0.4 35 79-113 33-68 (145)
3 1mzb_A Ferric uptake regulatio 14.1 38 0.0013 25.5 0.1 36 78-113 33-69 (136)
4 3mwm_A ZUR, putative metal upt 12.2 40 0.0014 25.8 -0.4 34 79-112 29-63 (139)
5 4b4a_A TATC, SEC-independent p 11.3 1.5E+02 0.0051 25.3 2.9 28 68-96 67-94 (249)
6 2w57_A Ferric uptake regulatio 11.0 42 0.0015 25.9 -0.6 36 78-113 32-68 (150)
7 2fe3_A Peroxide operon regulat 10.4 56 0.0019 24.9 -0.1 36 78-113 36-72 (145)
8 2xig_A Ferric uptake regulatio 10.0 42 0.0014 25.9 -0.9 36 78-113 41-77 (150)
9 3cjs_B 50S ribosomal protein L 8.5 83 0.0028 22.5 0.2 12 38-49 32-43 (72)
10 2a65_A Leutaa, Na(+):neurotran 8.4 6.6E+02 0.023 23.6 6.4 39 68-106 46-86 (519)
No 1
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=25.30 E-value=80 Score=19.82 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 027784 3 DLLGWFLVFIFLISLLGILSYQ 24 (219)
Q Consensus 3 ~~~~wilafil~~aLLfl~Vy~ 24 (219)
|.+++.+.++.+.+.+|.++++
T Consensus 2 Ea~vYt~ll~~tlgiiFFAI~F 23 (32)
T 3arc_T 2 ETITYVFIFACIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhhhh
Confidence 7788999999999999988887
No 2
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=15.98 E-value=37 Score=26.12 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=27.9
Q ss_pred hHHHHHhhhhhccCC-ccchhhhhhhHHHHHHHHHH
Q 027784 79 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 113 (219)
Q Consensus 79 Pll~Yhv~~y~~r~h-L~DpTeIfnqL~~~kke~~i 113 (219)
|+.++.++.-.++++ -+++++|+|+|+.-...|.+
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 678888887777665 58999999999988877644
No 3
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=14.10 E-value=38 Score=25.55 Aligned_cols=36 Identities=17% Similarity=-0.038 Sum_probs=27.9
Q ss_pred hhHHHHHhhhhhccCC-ccchhhhhhhHHHHHHHHHH
Q 027784 78 LPYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 113 (219)
Q Consensus 78 lPll~Yhv~~y~~r~h-L~DpTeIfnqL~~~kke~~i 113 (219)
-|+.+..++...++++ -++.++|+|+|+.-...+.+
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4678888887776654 58999999999988887654
No 4
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=12.17 E-value=40 Score=25.76 Aligned_cols=34 Identities=12% Similarity=-0.009 Sum_probs=23.8
Q ss_pred hHHHHHhhhhhccCC-ccchhhhhhhHHHHHHHHH
Q 027784 79 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRL 112 (219)
Q Consensus 79 Pll~Yhv~~y~~r~h-L~DpTeIfnqL~~~kke~~ 112 (219)
|+.+..++.-.++++ -++.++|+|+|+.-...+.
T Consensus 29 h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 29 FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 667777776665554 4788888888887766653
No 5
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=11.29 E-value=1.5e+02 Score=25.34 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=21.6
Q ss_pred hhHHHHHHhhhhHHHHHhhhhhccCCccc
Q 027784 68 TEHWFMFLLSLPYLYFNVRLYTRRQHLVD 96 (219)
Q Consensus 68 tG~W~~~LLNlPll~Yhv~~y~~r~hL~D 96 (219)
..-+...+++.|...|.+|++.+. |++.
T Consensus 67 vs~~~g~~~a~P~ilyQiw~Fi~P-gLy~ 94 (249)
T 4b4a_A 67 ISLAVGFIIASPVILYQFWRFIEP-ALYS 94 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-TTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cccH
Confidence 344577899999999999998864 5543
No 6
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=11.00 E-value=42 Score=25.91 Aligned_cols=36 Identities=6% Similarity=-0.105 Sum_probs=27.9
Q ss_pred hhHHHHHhhhhhccCC-ccchhhhhhhHHHHHHHHHH
Q 027784 78 LPYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 113 (219)
Q Consensus 78 lPll~Yhv~~y~~r~h-L~DpTeIfnqL~~~kke~~i 113 (219)
-|+.+..++...++++ -+++++|+|+|+.-...+.+
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4678888887776654 58999999999888777654
No 7
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=10.41 E-value=56 Score=24.94 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=27.9
Q ss_pred hhHHHHHhhhhhccCC-ccchhhhhhhHHHHHHHHHH
Q 027784 78 LPYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 113 (219)
Q Consensus 78 lPll~Yhv~~y~~r~h-L~DpTeIfnqL~~~kke~~i 113 (219)
-|+.+..++...++++ -++.++|+|+|+.-...|.+
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4778888887777664 58999999999888777654
No 8
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=9.98 E-value=42 Score=25.94 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=26.9
Q ss_pred hhHHHHHhhhhhccCC-ccchhhhhhhHHHHHHHHHH
Q 027784 78 LPYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 113 (219)
Q Consensus 78 lPll~Yhv~~y~~r~h-L~DpTeIfnqL~~~kke~~i 113 (219)
-|+.+..++...++++ -+++++|+|+|+.-...|.+
T Consensus 41 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 41 THLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 4778888887776554 48899999988887777644
No 9
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=8.55 E-value=83 Score=22.50 Aligned_cols=12 Identities=17% Similarity=0.105 Sum_probs=11.0
Q ss_pred CChHHHhhhcCc
Q 027784 38 INPYDSAAQINM 49 (219)
Q Consensus 38 iNPiD~c~rLN~ 49 (219)
+|+.|.|+.+|.
T Consensus 32 vni~~f~k~fN~ 43 (72)
T 3cjs_B 32 ANIMEFVKAFNA 43 (72)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799999999996
No 10
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=8.37 E-value=6.6e+02 Score=23.55 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=28.6
Q ss_pred hhHHHHHHhhhhHHHHHhh--hhhccCCccchhhhhhhHHH
Q 027784 68 TEHWFMFLLSLPYLYFNVR--LYTRRQHLVDVTEIYSQLTW 106 (219)
Q Consensus 68 tG~W~~~LLNlPll~Yhv~--~y~~r~hL~DpTeIfnqL~~ 106 (219)
.---.++++.+|++.-... ||.++.+.-.|.+.|+++.+
T Consensus 46 pYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~ 86 (519)
T 2a65_A 46 PYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWR 86 (519)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcC
Confidence 3334678889999888776 76665566688899988753
Done!