Query 027784
Match_columns 219
No_of_seqs 123 out of 230
Neff 3.8
Searched_HMMs 13730
Date Tue Mar 26 01:59:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027784.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027784hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mzba_ a.4.5.42 (A:) Ferric u 17.1 14 0.00099 26.2 0.1 35 79-113 32-67 (134)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 13.7 1E+02 0.0075 17.4 3.4 22 3-24 2-23 (30)
3 d2a65a1 f.54.1.1 (A:5-513) Na( 5.5 5.6E+02 0.041 20.9 6.4 26 66-91 40-67 (509)
4 d1otsa_ f.20.1.1 (A:) Clc chlo 5.4 2.3E+02 0.017 23.2 3.7 43 67-110 399-443 (444)
5 d1mmsa2 d.47.1.1 (A:8-70) Ribo 5.0 78 0.0057 20.6 0.2 13 37-49 25-37 (63)
6 d1qf8a_ g.41.4.1 (A:) Casein k 4.8 91 0.0066 23.8 0.5 47 125-175 72-118 (173)
7 d2gtga1 a.64.1.1 (A:2-79) Sapo 4.4 1.2E+02 0.009 18.5 0.9 16 32-48 60-75 (78)
8 d1znfa_ g.37.1.1 (A:) XFIN, th 4.1 1E+02 0.0073 16.8 0.2 7 144-150 4-10 (26)
9 d2gycg2 d.47.1.1 (G:2-72) Ribo 4.0 80 0.0058 21.1 -0.4 13 37-49 30-42 (71)
10 d1ppjd2 f.23.11.1 (D:196-241) 3.8 4.5E+02 0.033 15.6 4.7 28 109-136 7-37 (46)
No 1
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.05 E-value=14 Score=26.18 Aligned_cols=35 Identities=17% Similarity=-0.018 Sum_probs=27.1
Q ss_pred hHHHHHhhhhhccCC-ccchhhhhhhHHHHHHHHHH
Q 027784 79 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 113 (219)
Q Consensus 79 Pll~Yhv~~y~~r~h-L~DpTeIfnqL~~~kke~~i 113 (219)
|+.+..++...+.++ -++.++|+|+|+.-...+.+
T Consensus 32 h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli 67 (134)
T d1mzba_ 32 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 67 (134)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhccEE
Confidence 777888887777664 58899999988887777644
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.71 E-value=1e+02 Score=17.36 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 027784 3 DLLGWFLVFIFLISLLGILSYQ 24 (219)
Q Consensus 3 ~~~~wilafil~~aLLfl~Vy~ 24 (219)
|...+++.|....++.|..+++
T Consensus 2 e~i~yv~ifac~i~lfffaiff 23 (30)
T d2axtt1 2 ETITYVFIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeehHHHHHHHHHHHHHHHHh
Confidence 5677888887778888888876
No 3
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=5.50 E-value=5.6e+02 Score=20.90 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=19.1
Q ss_pred HhhhHHHHHHhhhhHHHHHhh--hhhcc
Q 027784 66 LITEHWFMFLLSLPYLYFNVR--LYTRR 91 (219)
Q Consensus 66 LLtG~W~~~LLNlPll~Yhv~--~y~~r 91 (219)
++.---.+++..+|++.-... |+.++
T Consensus 40 lipY~~~l~l~gvPll~lE~~lGq~~~~ 67 (509)
T d2a65a1 40 MIPYIIAFLLVGIPLMWIEWAMGRYGGA 67 (509)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 334445788999999998876 67665
No 4
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=5.37 E-value=2.3e+02 Score=23.20 Aligned_cols=43 Identities=9% Similarity=0.041 Sum_probs=29.6
Q ss_pred hhhH--HHHHHhhhhHHHHHhhhhhccCCccchhhhhhhHHHHHHH
Q 027784 67 ITEH--WFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHL 110 (219)
Q Consensus 67 LtG~--W~~~LLNlPll~Yhv~~y~~r~hL~DpTeIfnqL~~~kke 110 (219)
++|+ -+.-++-.-+.+|-+.+..+++.+|| +-+-|+++++++|
T Consensus 399 ltg~~~~~~p~~ia~~~a~~v~~~~~~~siY~-~~l~~~~~~~~~~ 443 (444)
T d1otsa_ 399 MTDNYQLILPMIITGLGATLLAQFTGGKPLYS-AILARTLAKQEAE 443 (444)
T ss_dssp HHCCGGGHHHHHHHHHHHHHHHHTTTCCCHHH-HHHHHHHHHHHHC
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHhhhcc
Confidence 4553 33334445567888888888888998 6677788877765
No 5
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=5.00 E-value=78 Score=20.64 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=10.6
Q ss_pred cCChHHHhhhcCc
Q 027784 37 YINPYDSAAQINM 49 (219)
Q Consensus 37 yiNPiD~c~rLN~ 49 (219)
=+|.+|.|+..|.
T Consensus 25 GiNi~~F~k~fN~ 37 (63)
T d1mmsa2 25 GVNIMEFCKRFNA 37 (63)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 3788999998885
No 6
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.77 E-value=91 Score=23.76 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=37.1
Q ss_pred HHHHHHHHhcccCCCCcccccceeeehhhhhhhhhhhhhccccccccccch
Q 027784 125 CIFWYCGSRCFDTLHESLFGLCEVTFKYVIGYFGLLEEISIDQASVLPTSL 175 (219)
Q Consensus 125 yLY~mI~sLv~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (219)
-||.+|.+-.--. -=|+-.+.=||.-|-||--..+.=++..+||.++
T Consensus 72 ~LYGLIHaRyI~T----~~Gl~~m~eKy~~g~FG~CPRv~C~~~~~LPiGl 118 (173)
T d1qf8a_ 72 MLYGLIHARYILT----NRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGL 118 (173)
T ss_dssp HHHHHHHHHHTTS----HHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEECS
T ss_pred HHHHHhhhheeec----HhHHHHHHHHHhCCCCCCCCCcccCCCccccccc
Confidence 4788888854331 1267777789999999999999999999999876
No 7
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.39 E-value=1.2e+02 Score=18.49 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=12.3
Q ss_pred ccccccCChHHHhhhcC
Q 027784 32 DLEGDYINPYDSAAQIN 48 (219)
Q Consensus 32 DLE~DyiNPiD~c~rLN 48 (219)
-++. ..||-+.|+.++
T Consensus 60 ~l~~-~~~p~~iC~~l~ 75 (78)
T d2gtga1 60 ILLE-EVSPELVCSMLH 75 (78)
T ss_dssp HHHT-TCCHHHHHHHTT
T ss_pred HHHh-CCCHHHHHHHcC
Confidence 3444 679999999886
No 8
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}
Probab=4.07 E-value=1e+02 Score=16.85 Aligned_cols=7 Identities=71% Similarity=1.531 Sum_probs=5.3
Q ss_pred ccceeee
Q 027784 144 GLCEVTF 150 (219)
Q Consensus 144 ~~~~~~~ 150 (219)
|+||-.|
T Consensus 4 glcersf 10 (26)
T d1znfa_ 4 GLCERSF 10 (26)
T ss_dssp SSSCCBC
T ss_pred cchHHHH
Confidence 7888766
No 9
>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.97 E-value=80 Score=21.06 Aligned_cols=13 Identities=15% Similarity=0.105 Sum_probs=10.4
Q ss_pred cCChHHHhhhcCc
Q 027784 37 YINPYDSAAQINM 49 (219)
Q Consensus 37 yiNPiD~c~rLN~ 49 (219)
=+|.+|.|++.|.
T Consensus 30 GiNi~~F~k~fN~ 42 (71)
T d2gycg2 30 GVNIMEFCKAFNA 42 (71)
T ss_dssp SCCSSSSSTTTTT
T ss_pred CcCHHHHHHHHHH
Confidence 4788888988885
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.80 E-value=4.5e+02 Score=15.62 Aligned_cols=28 Identities=14% Similarity=-0.088 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhccc
Q 027784 109 HLRLYKLCYLIILLV---LCIFWYCGSRCFD 136 (219)
Q Consensus 109 ke~~iKLaFYlllFF---~yLY~mI~sLv~~ 136 (219)
|.--+|....+.++. +|..|-+||.+.+
T Consensus 7 K~mG~Kv~~~l~~l~~l~yy~KR~~Ws~lKs 37 (46)
T d1ppjd2 7 KRMGLKMLLMMGLLLPLVYAMKRHKWSVLKS 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 333345444444433 3344888887754
Done!