BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027785
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|B Chain B, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|C Chain C, Crystal Structure Of Arabidopsis Thaliana Dj-1d
Length = 396
Score = 315 bits (808), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 149/206 (72%), Positives = 170/206 (82%)
Query: 4 SKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQT 63
S R+VL+LCGDY EDYE VPFQAL AFG++V CPGKK+GD CPTAVH GHQT
Sbjct: 8 SXANSRTVLILCGDYXEDYEVXVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQT 67
Query: 64 YSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASI 123
Y E+RGHNF LNATFDE+D +KYDGLVIPGGRAPEYLA+ SV++LV++FS SGK IASI
Sbjct: 68 YFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASI 127
Query: 124 CHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHP 183
HGQLILAAAD V GRKCTAY V P L+AAGA W+EP T CVVDG++IT ATYEGHP
Sbjct: 128 XHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHP 187
Query: 184 EFIRLFLKALGGTITGSDKRILFLCG 209
EFI+LF+KALGG ITG++KRILFLCG
Sbjct: 188 EFIQLFVKALGGKITGANKRILFLCG 213
Score = 237 bits (605), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 108/189 (57%), Positives = 135/189 (71%)
Query: 6 GGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYS 65
G + +L LCGDY EDYE VPFQ+L A G VDA CP KK+GD CPTA+H G QTYS
Sbjct: 203 GANKRILFLCGDYXEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYS 262
Query: 66 ETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125
E GH FAL FD++ + YD LVIPGGRAPEYLA+N+ V+++V++F NS K +ASI H
Sbjct: 263 EKPGHTFALTTNFDDLVSSSYDALVIPGGRAPEYLALNEHVLNIVKEFXNSEKPVASIXH 322
Query: 126 GQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEF 185
GQ ILAAA V+KGRKCTAYP VK ++ G +W+EP+ + C DGN++TGA + GHPEF
Sbjct: 323 GQQILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAWPGHPEF 382
Query: 186 IRLFLKALG 194
+ LG
Sbjct: 383 VSQLXALLG 391
>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|B Chain B, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|C Chain C, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
Length = 166
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 96/184 (52%), Gaps = 24/184 (13%)
Query: 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
VL L + ED E + P+ L G V A S T + G
Sbjct: 2 KVLFLTANEFEDVELIYPYHRLKEEGHEVYIA----------------SFERGTITGKHG 45
Query: 70 HNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
++ ++ TFD+++P ++D LV+PGGRAPE + +N+ + + RK + GK +ASICHG I
Sbjct: 46 YSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKXFSEGKPVASICHGPQI 105
Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGAT----YEGHPEF 185
L +A V++GRK T+YP +K I AG W++ E VVDGN ++ Y EF
Sbjct: 106 LISAGVLRGRKGTSYPGIKDDXINAGVEWVDAE----VVVDGNWVSSRVPADLYAWXREF 161
Query: 186 IRLF 189
++L
Sbjct: 162 VKLL 165
>pdb|3L18|A Chain A, Ton1285, An Intracellular Protease From Thermococcus
Onnurineus Na1
pdb|3L18|B Chain B, Ton1285, An Intracellular Protease From Thermococcus
Onnurineus Na1
Length = 168
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 28/186 (15%)
Query: 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC--PGKKSGDVCPTAVHQSTGHQTYSET 67
VL L D ED E + P + G V A GK +G
Sbjct: 4 KVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITG------------------K 45
Query: 68 RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127
G++ ++ TF+E+DP ++D LV+PGG+APE + +N+ + + R+ K +ASICHG
Sbjct: 46 HGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGP 105
Query: 128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHP 183
IL +A V+KGR+ T+ ++ +I AGA WI+ E VVDGN ++ G Y
Sbjct: 106 QILISAKVLKGRRGTSTITIRDDVINAGAEWIDAE----VVVDGNWVSSRHPGDLYAWMR 161
Query: 184 EFIRLF 189
EF++L
Sbjct: 162 EFVKLL 167
>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli
pdb|1OI4|B Chain B, Crystal Structure Of Yhbo From Escherichia Coli
Length = 193
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 25/194 (12%)
Query: 6 GGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYS 65
G + + +L D ED E P A +K+G T + + G
Sbjct: 21 GLSKKIAVLITDEFEDSEFTSP-------------ADEFRKAGHEVIT-IEKQAGKTVKG 66
Query: 66 ETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125
+ + ++ + DE+ P ++D L++PGG +P+YL ++ + R F NSGK + +ICH
Sbjct: 67 KKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICH 126
Query: 126 GQLILAAADVVKGRKCTAYPPVKPVLI---AAGASWIEPETMAACVVDGN-IITGATYEG 181
G +L +ADV++GRK TA VKP++I AGA + + E VVD + ++T T +
Sbjct: 127 GPQLLISADVIRGRKLTA---VKPIIIDVKNAGAEFYDQE----VVVDKDQLVTSRTPDD 179
Query: 182 HPEFIRLFLKALGG 195
P F R L+ LG
Sbjct: 180 LPAFNREALRLLGA 193
>pdb|2VRN|A Chain A, The Structure Of The Stress Response Protein Dr1199 From
Deinococcus Radiodurans: A Member Of The Dj-1
Superfamily
pdb|2VRN|B Chain B, The Structure Of The Stress Response Protein Dr1199 From
Deinococcus Radiodurans: A Member Of The Dj-1
Superfamily
Length = 190
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 26/183 (14%)
Query: 9 RSVLLLCGDYMEDYEAMVPFQALLAFG-----VSVDAACPGKKSGDVCPTAVHQSTGHQT 63
+ + +L D +E+ E P A+ A G +S++ GD+ P
Sbjct: 10 KKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQ---------- 59
Query: 64 YSETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIAS 122
+ ++ E+ + YDGL++PGG P+ L + + + VR ++GK IA+
Sbjct: 60 ------EKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAA 113
Query: 123 ICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGH 182
I HG L+ + +G K T++ +K L AGA W++ E CV D ++T +
Sbjct: 114 IXHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEE----CVTDKGVVTSRKPDDL 169
Query: 183 PEF 185
P F
Sbjct: 170 PAF 172
>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing
Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496)
From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution
pdb|3FSE|B Chain B, Crystal Structure Of A Two-Domain Protein Containing
Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496)
From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution
Length = 365
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 3 NSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQ 62
++ GK+ V +L +ED E ++P L G V V S ++
Sbjct: 5 HNNSGKKKVAILIEQAVEDTEFIIPCNGLKQAGFEV---------------VVLGSRXNE 49
Query: 63 TYSETRGH-NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIA 121
Y RG + + T E +++D +VIPGG AP+ N + + V++ GK +A
Sbjct: 50 KYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGXAPDKXRRNPNTVRFVQEAXEQGKLVA 109
Query: 122 SICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT 175
++ HG +L D+++G++ T + + AGA +++ A VVDGN+IT
Sbjct: 110 AVXHGPQVLIEGDLLRGKQATGFIAISKDXXNAGADYLDE----ALVVDGNLIT 159
>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta
pdb|4E08|B Chain B, Crystal Structure Of Drosophila Melanogaster Dj-1beta
Length = 190
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 75 NATFDEIDPTKYDGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILAA 132
+ + ++ K+D +V+PGG AM +S V DL+R + G IA+IC +LA
Sbjct: 57 DTSLAQVASDKFDVVVLPGGLGGSN-AMGESSLVGDLLRSQESGGGLIAAICAAPTVLAK 115
Query: 133 ADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYE 180
V G+ T+YP +KP L+ S+++ +T+ V DGN+IT G YE
Sbjct: 116 HGVASGKSLTSYPSMKPQLV-NNYSYVDDKTV---VKDGNLITSRGPGTAYE 163
>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 72 FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
L AT D D + IPGG L + + +R+ + + + S+C G L+L
Sbjct: 52 LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCSGSLVLG 111
Query: 132 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
AA +++G++ T + +L GA + V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152
>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 72 FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
L AT D D + IPGG L + + +R+ + + + S+C G L+L
Sbjct: 52 LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCTGSLVLG 111
Query: 132 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
AA +++G++ T + +L GA + V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152
>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From
Pseudomonas Fluorescens
pdb|3NOO|B Chain B, Crystal Structure Of C101a Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 72 FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
L AT D D + IPGG L + + +R+ + + + S+ G L+L
Sbjct: 52 LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVATGSLVLG 111
Query: 132 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
AA +++G++ T + +L GA + V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152
>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij)
pdb|2AB0|B Chain B, Crystal Structure Of E. Coli Protein Yajl (Thij)
Length = 205
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 46 KSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGG-RAPEYLAMND 104
+ G TA S G+ + +RG +A E+ +YD +V+PGG + E +
Sbjct: 27 RGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDST 86
Query: 105 SVIDLVRKFSNSGKTIASICHG-QLILAAADVVKGRKCTAYPPVK 148
+++ V++F SG+ +A+IC +L D+ T +P +K
Sbjct: 87 LLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLK 131
>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From
Pseudomonas Fluorescens
pdb|3NOQ|B Chain B, Crystal Structure Of C101s Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 72 FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
L AT D D + IPGG L + + +R+ + + + S+ G L+L
Sbjct: 52 LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLG 111
Query: 132 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
AA +++G++ T + +L GA + V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152
>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas
Fluorescens
pdb|3NON|B Chain B, Crystal Structure Of Isocyanide Hydratase From Pseudomonas
Fluorescens
Length = 231
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 72 FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
L AT D D + IPGG L + + +R+ + + + S+ G L+L
Sbjct: 52 LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVXTGSLVLG 111
Query: 132 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
AA +++G++ T + +L GA + V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152
>pdb|3MGK|A Chain A, Crystal Structure Of Probable ProteaseAMIDASE FROM
Clostridium Acetobutylicum Atcc 824
pdb|3MGK|B Chain B, Crystal Structure Of Probable ProteaseAMIDASE FROM
Clostridium Acetobutylicum Atcc 824
Length = 211
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVK 148
L +PGG +D+ I+ + K I S+C G +L+ A ++ G++ T
Sbjct: 69 LFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKAGILNGKRATTNKRSF 128
Query: 149 PVLIAAGAS--WIEPETMAACVVDGNIITGA 177
+ W++ A V DGNI T +
Sbjct: 129 KWVTEQNEDVLWVKE---ARWVKDGNIYTSS 156
>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein
Length = 208
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 17/146 (11%)
Query: 2 ANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH 61
A +G + +L+ E+ E ++ L+ G V A G K Q G
Sbjct: 3 AXEQGXSKRILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKL---------QVQG- 52
Query: 62 QTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTI 120
+RG T + +D L +PGG + A + +++ L+ FS GK +
Sbjct: 53 -----SRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLV 107
Query: 121 ASICHG-QLILAAADVVKGRKCTAYP 145
A+IC L+ A G + T +P
Sbjct: 108 AAICATPALVFAKQQKFVGARXTCHP 133
>pdb|3EWN|A Chain A, Crystal Structure Of A ThijPFPI FAMILY PROTEIN FROM
PSEUDOMONAS Syringae
Length = 253
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 89 LVIPGGRAPEYLAMNDS-VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPV 147
L PGG A +D+ + K I S+C G LIL AA ++KG K T++
Sbjct: 88 LFAPGGTDGTLAAASDAETLAFXADRGARAKYITSVCSGSLILGAAGLLKGYKATSHWSC 147
Query: 148 KPVLIAAGASWIEPETMAACVVDGNIITGA 177
+ L GA T A V D N ITGA
Sbjct: 148 RDALAGFGAI----PTEARVVRDRNRITGA 173
>pdb|2FEX|A Chain A, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
pdb|2FEX|B Chain B, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
pdb|2FEX|C Chain C, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
Length = 188
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 55 VHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFS 114
VH + + G + ++D +DP D LVIPGG + E D + LV++F
Sbjct: 33 VHATPDGXPVTSXGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAAD-LGGLVKRFR 91
Query: 115 NSGKTIASIC 124
+ + +A IC
Sbjct: 92 DRDRLVAGIC 101
>pdb|3BHN|A Chain A, Crystal Structure Of A Dj-1PFPI-Like Protein (Shew_2856)
From Shewanella Loihica Pv-4 At 1.76 A Resolution
Length = 236
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 101 AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIE 160
A+ D K S + I SIC G +L ++KG+K T P K VL G +
Sbjct: 96 ALQDENFXSALKLDPSRQLIGSICAGSFVLHELGLLKGKKLTTNPDAKAVLQGXGGDVQD 155
Query: 161 PETMAACVVDGNIIT 175
V++GNI T
Sbjct: 156 ----LPLVIEGNIAT 166
>pdb|3N7T|A Chain A, Crystal Structure Of A Macrophage Binding Protein From
Cocci Immitis
Length = 247
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 77/227 (33%), Gaps = 42/227 (18%)
Query: 7 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACP----GKKSGDVCPTAVHQSTGHQ 62
GKR+ L EA+ PF L A G VD A G + + +
Sbjct: 27 GKRTGLFFS-------EALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKV 79
Query: 63 TYSETRGHNFALNATF---DEIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGK 118
+SE +N ++ P Y + + GG Y + ++ + G
Sbjct: 80 LHSEHNHFMEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGG 139
Query: 119 TIASICHGQLILAA------ADVVKGRKCTAYPPVKPVLI-------------------A 153
I ++CHG +L V+K + T + ++I
Sbjct: 140 VIGAVCHGPAMLPGIHDENGDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIADMAQT 199
Query: 154 AGASWIEPETMAA--CVVDGNIITGATYEGHPEFIRLFLKALGGTIT 198
A A ++ PE C VDG I+TGA + R +K G +
Sbjct: 200 ANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGIVN 246
>pdb|2NV0|A Chain A, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV0|B Chain B, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
Length = 196
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 84 TKYDGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILA 131
+ DGL++PGG + + D+ ++ +R+F+ GK + C G +ILA
Sbjct: 37 NEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILA 86
>pdb|2NV2|B Chain B, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|D Chain D, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|F Chain F, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|H Chain H, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|J Chain J, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|L Chain L, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|N Chain N, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|P Chain P, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|R Chain R, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|T Chain T, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|V Chain V, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|X Chain X, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 204
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 84 TKYDGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILA 131
+ DGL++PGG + + D+ ++ +R+F+ GK + C G +ILA
Sbjct: 37 NEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILA 86
>pdb|3L3B|A Chain A, Crystal Structure Of Isoprenoid Biosynthesis Protein With
Amidotransferase-Like Domain From Ehrlichia Chaffeensis
At 1.90a Resolution
pdb|3L3B|B Chain B, Crystal Structure Of Isoprenoid Biosynthesis Protein With
Amidotransferase-Like Domain From Ehrlichia Chaffeensis
At 1.90a Resolution
Length = 242
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 16/138 (11%)
Query: 11 VLLLCG--DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
+L CG D E EA++ L V+ P K V +S G
Sbjct: 29 ILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVE 88
Query: 69 GHNFALNATFD--EIDPTKYDGLVIPGGR--APEYLAM------NDSVI----DLVRKFS 114
A + +D +I ++D LVIPGG A + + ND ++ + VR+F
Sbjct: 89 SARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFY 148
Query: 115 NSGKTIASICHGQLILAA 132
N+ K I ++C ++ A
Sbjct: 149 NAKKPIGAVCISPAVVVA 166
>pdb|1R9G|A Chain A, Three-Dimensional Structure Of Yaae From Bacillus Subtilis
pdb|1R9G|B Chain B, Three-Dimensional Structure Of Yaae From Bacillus Subtilis
Length = 216
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 84 TKYDGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILA 131
+ DGL++PGG + + D+ + +R+F+ GK C G +ILA
Sbjct: 57 NEVDGLILPGGESTTXRRLIDTYQFXEPLREFAAQGKPXFGTCAGLIILA 106
>pdb|3CNE|A Chain A, Crystal Structure Of The Putative Protease I From
Bacteroides Thetaiotaomicron
pdb|3CNE|B Chain B, Crystal Structure Of The Putative Protease I From
Bacteroides Thetaiotaomicron
pdb|3CNE|C Chain C, Crystal Structure Of The Putative Protease I From
Bacteroides Thetaiotaomicron
pdb|3CNE|D Chain D, Crystal Structure Of The Putative Protease I From
Bacteroides Thetaiotaomicron
Length = 175
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 85 KYDGLVIPGGRAPEYLAM------NDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 138
++D LV G A N + ++++ F GK C G + KG
Sbjct: 66 EFDALVFSCGDAVPVFQQYANQPYNVDLXEVIKTFGEKGKXXIGHCAGAXXFDFTGITKG 125
Query: 139 RKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT 175
+K +P KP + A+ + E +DGN T
Sbjct: 126 KKVAVHPLAKPAIQNGIATDEKSE------IDGNFFT 156
>pdb|2YKK|A Chain A, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
Glycoside Hydrolase Family 44
pdb|3ZQ9|A Chain A, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
Glycoside Hydrolase Family 44
Length = 524
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 123 ICHGQL---ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATY 179
+ HGQ I D K RK P+ P + E MAA + GN +TG +
Sbjct: 1 VVHGQTAKTITIKVDTFKDRK-----PISPYIYGTNQDLAGDENMAARRLGGNRMTGYNW 55
Query: 180 EGH 182
E +
Sbjct: 56 ENN 58
>pdb|1VHJ|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHJ|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHJ|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHJ|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHJ|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHJ|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHW|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
pdb|1VHW|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
pdb|1VHW|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
pdb|1VHW|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
pdb|1VHW|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
pdb|1VHW|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
Length = 253
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 17 DYMEDYEAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN 75
D M+ Y + V +A +GV AA G K+ +C + H TG QT SE R +
Sbjct: 171 DVMDKYGIVGVEMEAAGIYGV---AAEYGAKALAICTVSDHIKTGEQTTSEERQN----- 222
Query: 76 ATFDEIDPTKYDGLVI 91
TF+E+ D ++I
Sbjct: 223 -TFNEMIEIALDSVLI 237
>pdb|2YIH|A Chain A, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
Gh Family 44 With Xyloglucan
pdb|2YJQ|A Chain A, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
Glycoside Hydrolase Family 44
pdb|2YJQ|B Chain B, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
Glycoside Hydrolase Family 44
Length = 524
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 123 ICHGQL---ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATY 179
+ HGQ I D K RK P+ P + E MAA + GN +TG +
Sbjct: 1 VVHGQTAKTITIKVDTFKDRK-----PISPYIYGTNQDLAGDENMAARRLGGNRMTGYNW 55
Query: 180 EGH 182
E +
Sbjct: 56 ENN 58
>pdb|3OF3|A Chain A, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|B Chain B, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|C Chain C, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|D Chain D, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|E Chain E, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|F Chain F, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|G Chain G, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|H Chain H, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|I Chain I, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|J Chain J, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|K Chain K, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|L Chain L, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
Length = 241
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 17 DYMEDYEAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN 75
D M+ Y + V +A +GV AA G K+ +C + H TG QT SE R +
Sbjct: 169 DVMDKYGIVGVEMEAAGIYGV---AAEYGAKALAICTVSDHIKTGEQTTSEERQN----- 220
Query: 76 ATFDEIDPTKYDGLVI 91
TF+E+ D ++I
Sbjct: 221 -TFNEMIEIALDSVLI 235
>pdb|1GPW|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1K9V|F Chain F, Structural Evidence For Ammonia Tunelling Across The
(Beta- Alpha)8-Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
Length = 201
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 86 YDGLVIPG----GRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG-QLILAAADVVKGRK 140
YD L IPG G L ND +ID VRK + + +C G QL+ ++ G K
Sbjct: 43 YDLLFIPGVGHFGEGMRRLREND-LIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVK 101
>pdb|2WJZ|B Chain B, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|D Chain D, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|F Chain F, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
Length = 201
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 86 YDGLVIPG----GRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG-QLILAAADVVKGRK 140
YD L IPG G L ND +ID VRK + + +C G QL+ ++ G K
Sbjct: 43 YDLLFIPGVGHFGEGMRRLREND-LIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVK 101
>pdb|1KXJ|A Chain A, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
pdb|1KXJ|B Chain B, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
Length = 205
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 86 YDGLVIPG----GRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG-QLILAAADVVKGRK 140
YD L IPG G L ND +ID VRK + + +C G QL+ ++ G K
Sbjct: 45 YDLLFIPGVGHFGEGMRRLREND-LIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVK 103
>pdb|2VJH|B Chain B, The Structure Of Phycoerythrin From Gloeobacter Violaceus
pdb|2VJH|D Chain D, The Structure Of Phycoerythrin From Gloeobacter Violaceus
Length = 177
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
Query: 99 YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASW 158
Y+A + +D V +++ I S D V G C P LI+AG
Sbjct: 30 YIANGNKRLDAVNAITSNASCIVS-----------DAVSGMICE-----NPGLISAGGXC 73
Query: 159 IEPETMAACVVDGNII 174
MAAC+ DG I+
Sbjct: 74 YTNRRMAACLRDGEIV 89
>pdb|1Q7R|A Chain A, X-Ray Crystallographic Analysis Of A Predicted
Amidotransferase From B. Stearothermophilus At 1.9 A
Resolution
Length = 219
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 87 DGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILA 131
DGLV+PGG + + D + + +++F+ +GK C G ++LA
Sbjct: 62 DGLVLPGGESTTXRRLIDRYGLXEPLKQFAAAGKPXFGTCAGLILLA 108
>pdb|3KKL|A Chain A, Crystal Structure Of Functionally Unknown Hsp33 From
Saccharomyces Cerevisiae
pdb|3KKL|B Chain B, Crystal Structure Of Functionally Unknown Hsp33 From
Saccharomyces Cerevisiae
Length = 244
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 108 DLVRKFSNSGKTIASICHGQLIL-------AAADVVKGRKCTAYP 145
D+ K +G IA+ICHG L+ +++G+ T +P
Sbjct: 122 DIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFP 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,988,814
Number of Sequences: 62578
Number of extensions: 285992
Number of successful extensions: 630
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 37
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)