Query 027785
Match_columns 219
No_of_seqs 178 out of 1346
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 15:09:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01382 PfpI intracellular p 100.0 4.8E-36 1E-40 228.3 17.4 166 10-194 1-166 (166)
2 cd03169 GATase1_PfpI_1 Type 1 100.0 2.8E-35 6E-40 227.0 18.5 180 10-193 1-180 (180)
3 cd03135 GATase1_DJ-1 Type 1 gl 100.0 1.6E-35 3.4E-40 224.7 16.4 162 11-193 1-163 (163)
4 cd03134 GATase1_PfpI_like A ty 100.0 1.6E-35 3.4E-40 225.2 16.3 162 10-191 1-164 (165)
5 TIGR01383 not_thiJ DJ-1 family 100.0 3.6E-35 7.9E-40 226.0 15.1 170 10-199 1-173 (179)
6 cd03137 GATase1_AraC_1 AraC tr 100.0 4.1E-35 8.9E-40 227.3 14.3 170 11-200 1-178 (187)
7 cd03139 GATase1_PfpI_2 Type 1 100.0 3.1E-35 6.7E-40 227.2 11.7 174 11-205 1-181 (183)
8 cd03136 GATase1_AraC_ArgR_like 100.0 1.6E-34 3.4E-39 223.7 14.2 167 11-200 1-176 (185)
9 PRK09393 ftrA transcriptional 100.0 4.2E-34 9.1E-39 239.2 16.5 183 1-206 4-196 (322)
10 PF13278 DUF4066: Putative ami 100.0 1.7E-33 3.7E-38 214.3 14.7 158 14-191 1-166 (166)
11 cd03138 GATase1_AraC_2 AraC tr 100.0 2E-33 4.4E-38 219.2 14.9 169 11-200 1-186 (195)
12 cd03140 GATase1_PfpI_3 Type 1 100.0 8.2E-33 1.8E-37 211.3 14.4 163 11-194 1-167 (170)
13 PRK11574 oxidative-stress-resi 100.0 2E-32 4.3E-37 213.8 16.4 186 8-213 2-194 (196)
14 COG4977 Transcriptional regula 100.0 2.5E-32 5.5E-37 224.3 15.7 178 8-206 10-197 (328)
15 KOG2764 Putative transcription 100.0 7.5E-32 1.6E-36 206.5 15.3 174 8-200 5-180 (247)
16 cd03147 GATase1_Ydr533c_like T 100.0 4.5E-31 9.6E-36 209.9 15.9 177 17-193 20-231 (231)
17 cd03141 GATase1_Hsp31_like Typ 100.0 4.8E-31 1E-35 209.3 15.1 177 17-193 18-221 (221)
18 PRK04155 chaperone protein Hch 100.0 1.1E-30 2.3E-35 213.0 17.0 190 7-196 48-284 (287)
19 COG0693 ThiJ Putative intracel 100.0 1.1E-29 2.4E-34 197.1 18.4 176 8-197 2-186 (188)
20 cd03148 GATase1_EcHsp31_like T 100.0 9.2E-30 2E-34 202.5 15.1 179 15-193 19-231 (232)
21 PF01965 DJ-1_PfpI: DJ-1/PfpI 100.0 1.2E-28 2.5E-33 184.1 11.1 141 37-194 1-147 (147)
22 PRK11780 isoprenoid biosynthes 100.0 3.2E-27 7E-32 185.9 16.8 165 9-180 2-193 (217)
23 cd03133 GATase1_ES1 Type 1 glu 99.9 3.7E-26 8.1E-31 178.8 15.5 172 11-189 1-202 (213)
24 cd03132 GATase1_catalase Type 99.9 2.2E-23 4.7E-28 154.7 13.9 113 8-136 1-114 (142)
25 PRK11249 katE hydroperoxidase 99.8 9.5E-18 2.1E-22 150.9 12.9 114 8-137 597-711 (752)
26 COG3155 ElbB Uncharacterized p 99.5 1.2E-12 2.6E-17 95.7 11.4 174 9-191 2-200 (217)
27 cd01740 GATase1_FGAR_AT Type 1 99.4 9.9E-13 2.2E-17 105.5 11.0 129 11-177 1-136 (238)
28 PRK03619 phosphoribosylformylg 99.4 1.3E-12 2.8E-17 103.5 11.4 93 10-140 2-102 (219)
29 PRK01175 phosphoribosylformylg 99.4 2.2E-12 4.9E-17 104.3 11.0 99 8-138 3-110 (261)
30 COG0047 PurL Phosphoribosylfor 99.3 8.6E-12 1.9E-16 96.7 8.9 93 9-138 3-102 (231)
31 TIGR01737 FGAM_synth_I phospho 99.3 4.4E-11 9.5E-16 95.4 12.1 93 9-139 1-100 (227)
32 TIGR03800 PLP_synth_Pdx2 pyrid 99.0 7E-10 1.5E-14 85.6 7.4 84 10-133 1-86 (184)
33 cd01653 GATase1 Type 1 glutami 99.0 3.4E-09 7.3E-14 73.4 10.2 91 11-130 1-92 (115)
34 PRK13527 glutamine amidotransf 99.0 1.5E-09 3.3E-14 84.9 8.2 90 10-133 2-93 (200)
35 PF13507 GATase_5: CobB/CobQ-l 99.0 1.1E-09 2.3E-14 88.6 6.5 99 9-139 2-112 (259)
36 PRK13526 glutamine amidotransf 99.0 1.6E-09 3.4E-14 82.5 6.9 89 9-138 3-97 (179)
37 PRK13525 glutamine amidotransf 98.8 2.2E-08 4.8E-13 77.6 8.7 85 9-133 2-88 (189)
38 cd03128 GAT_1 Type 1 glutamine 98.8 3.3E-08 7.1E-13 65.4 8.3 91 11-130 1-92 (92)
39 PRK07053 glutamine amidotransf 98.7 2.8E-07 6.2E-12 73.7 11.3 94 8-133 2-99 (234)
40 PRK08250 glutamine amidotransf 98.7 3.2E-07 7E-12 73.5 11.4 93 9-133 1-100 (235)
41 PLN02832 glutamine amidotransf 98.7 9.7E-08 2.1E-12 76.5 7.7 85 9-133 2-88 (248)
42 cd03130 GATase1_CobB Type 1 gl 98.6 2.7E-07 5.8E-12 72.1 9.3 77 24-134 13-92 (198)
43 PRK13143 hisH imidazole glycer 98.6 1.7E-07 3.7E-12 73.3 7.9 85 10-133 2-87 (200)
44 cd01750 GATase1_CobQ Type 1 gl 98.6 2.9E-07 6.3E-12 71.7 7.8 86 11-134 1-89 (194)
45 TIGR01857 FGAM-synthase phosph 98.5 5.4E-07 1.2E-11 86.2 10.3 107 8-139 977-1096(1239)
46 PRK06490 glutamine amidotransf 98.5 1.9E-06 4E-11 69.3 10.8 94 8-133 7-102 (239)
47 cd01749 GATase1_PB Glutamine A 98.5 3.7E-07 8.1E-12 70.4 6.4 83 11-133 1-85 (183)
48 PLN03206 phosphoribosylformylg 98.5 1.4E-06 3.1E-11 83.9 11.4 101 8-140 1037-1149(1307)
49 cd01741 GATase1_1 Subgroup of 98.4 2.2E-06 4.8E-11 66.3 9.7 91 10-133 1-97 (188)
50 TIGR01735 FGAM_synt phosphorib 98.4 2.2E-06 4.7E-11 83.1 10.4 100 8-139 1055-1167(1310)
51 PRK01077 cobyrinic acid a,c-di 98.4 3E-06 6.5E-11 74.3 10.4 90 9-133 246-338 (451)
52 PRK05297 phosphoribosylformylg 98.4 3.7E-06 8E-11 81.7 11.2 99 8-138 1035-1146(1290)
53 CHL00188 hisH imidazole glycer 98.3 2E-06 4.2E-11 67.8 7.6 92 9-140 2-106 (210)
54 COG0311 PDX2 Predicted glutami 98.3 1.3E-06 2.8E-11 65.9 6.2 84 9-132 1-87 (194)
55 cd01748 GATase1_IGP_Synthase T 98.3 2.1E-06 4.5E-11 67.1 6.5 76 22-133 9-87 (198)
56 PRK13141 hisH imidazole glycer 98.3 2.1E-06 4.4E-11 67.5 6.0 84 11-133 2-88 (205)
57 PHA03366 FGAM-synthase; Provis 98.2 8.7E-06 1.9E-10 79.1 10.9 97 8-137 1028-1137(1304)
58 cd01744 GATase1_CPSase Small c 98.2 4.5E-06 9.7E-11 64.1 7.4 75 26-133 11-85 (178)
59 PRK06895 putative anthranilate 98.2 8.6E-06 1.9E-10 63.2 8.4 87 9-133 2-88 (190)
60 PRK05665 amidotransferase; Pro 98.2 2.8E-05 6.2E-10 62.5 10.8 50 84-133 56-107 (240)
61 PRK09065 glutamine amidotransf 98.2 1.8E-05 4E-10 63.5 9.6 50 84-133 53-104 (237)
62 TIGR01739 tegu_FGAM_synt herpe 98.1 1.9E-05 4.2E-10 76.3 11.1 98 8-138 929-1039(1202)
63 PRK13146 hisH imidazole glycer 98.1 1.1E-05 2.4E-10 63.5 7.8 87 9-134 2-94 (209)
64 TIGR00888 guaA_Nterm GMP synth 98.1 1.6E-05 3.4E-10 61.6 7.4 78 22-133 9-86 (188)
65 PF07685 GATase_3: CobB/CobQ-l 97.9 1.1E-05 2.4E-10 60.7 4.3 54 82-135 4-60 (158)
66 PRK07567 glutamine amidotransf 97.9 6E-05 1.3E-09 60.7 8.7 95 9-133 2-109 (242)
67 TIGR00379 cobB cobyrinic acid 97.9 6.2E-05 1.3E-09 66.0 9.4 90 9-133 245-337 (449)
68 PRK13170 hisH imidazole glycer 97.9 2.9E-05 6.3E-10 60.5 6.6 82 10-133 2-86 (196)
69 cd01742 GATase1_GMP_Synthase T 97.9 6.8E-05 1.5E-09 57.6 8.4 76 24-133 11-86 (181)
70 PRK13181 hisH imidazole glycer 97.9 3.4E-05 7.3E-10 60.3 6.8 49 85-133 37-88 (199)
71 TIGR01855 IMP_synth_hisH imida 97.9 4.5E-05 9.8E-10 59.4 7.4 74 23-133 10-87 (196)
72 PF01174 SNO: SNO glutamine am 97.9 2.2E-05 4.7E-10 59.9 5.3 59 85-143 33-100 (188)
73 COG0518 GuaA GMP synthase - Gl 97.9 0.00015 3.2E-09 56.5 9.9 50 84-133 44-95 (198)
74 PRK07765 para-aminobenzoate sy 97.9 6.4E-05 1.4E-09 59.4 8.0 80 24-133 13-92 (214)
75 PRK08007 para-aminobenzoate sy 97.8 5.5E-05 1.2E-09 58.5 6.8 87 13-133 2-88 (187)
76 PRK00784 cobyric acid synthase 97.8 6E-05 1.3E-09 66.8 7.7 49 85-133 290-341 (488)
77 PRK06774 para-aminobenzoate sy 97.8 6E-05 1.3E-09 58.5 6.8 76 25-133 13-88 (191)
78 PLN02617 imidazole glycerol ph 97.8 0.00012 2.6E-09 65.3 9.3 87 8-133 6-95 (538)
79 COG0118 HisH Glutamine amidotr 97.8 8.9E-05 1.9E-09 57.1 7.3 85 9-133 2-90 (204)
80 PRK12564 carbamoyl phosphate s 97.8 0.00014 3.1E-09 61.8 8.6 87 9-133 178-264 (360)
81 PRK05670 anthranilate synthase 97.8 0.00012 2.6E-09 56.7 7.5 80 21-133 9-88 (189)
82 TIGR00566 trpG_papA glutamine 97.8 0.00013 2.7E-09 56.6 7.5 76 25-133 13-88 (188)
83 PRK05637 anthranilate synthase 97.7 0.00015 3.3E-09 57.0 7.6 87 9-133 2-89 (208)
84 PRK13566 anthranilate synthase 97.7 0.00024 5.1E-09 65.6 9.6 90 7-133 525-614 (720)
85 PF00117 GATase: Glutamine ami 97.7 6.2E-05 1.3E-09 58.3 5.1 79 24-133 10-88 (192)
86 cd01745 GATase1_2 Subgroup of 97.7 0.00013 2.8E-09 56.6 6.5 50 84-133 52-116 (189)
87 CHL00197 carA carbamoyl-phosph 97.6 0.00038 8.2E-09 59.5 9.3 87 9-133 193-279 (382)
88 cd01743 GATase1_Anthranilate_S 97.6 0.00032 6.8E-09 54.1 8.0 76 25-133 12-87 (184)
89 PRK08857 para-aminobenzoate sy 97.6 0.00025 5.4E-09 55.1 7.2 86 13-133 2-88 (193)
90 CHL00101 trpG anthranilate syn 97.6 0.0002 4.3E-09 55.6 6.6 76 25-133 13-88 (190)
91 PLN02335 anthranilate synthase 97.6 0.00036 7.8E-09 55.5 8.1 89 8-133 18-107 (222)
92 PRK13152 hisH imidazole glycer 97.6 0.00029 6.2E-09 55.1 7.1 48 85-133 37-89 (201)
93 PRK00758 GMP synthase subunit 97.6 0.00031 6.7E-09 54.1 7.1 43 85-133 40-83 (184)
94 TIGR01815 TrpE-clade3 anthrani 97.6 0.00053 1.2E-08 63.2 9.7 89 8-133 516-604 (717)
95 PRK07649 para-aminobenzoate/an 97.5 0.00035 7.7E-09 54.4 6.9 76 25-133 13-88 (195)
96 COG1797 CobB Cobyrinic acid a, 97.5 0.00061 1.3E-08 58.4 8.5 91 9-133 246-339 (451)
97 cd03144 GATase1_ScBLP_like Typ 97.5 0.00024 5.3E-09 50.2 5.2 87 10-130 1-90 (114)
98 TIGR01368 CPSaseIIsmall carbam 97.5 0.00051 1.1E-08 58.3 8.1 85 10-133 175-259 (358)
99 PRK12838 carbamoyl phosphate s 97.5 0.00043 9.4E-09 58.7 7.6 75 25-133 179-253 (354)
100 PRK13896 cobyrinic acid a,c-di 97.5 0.00035 7.7E-09 60.8 7.0 48 85-133 274-324 (433)
101 PRK13142 hisH imidazole glycer 97.5 0.0003 6.5E-09 54.5 5.9 82 11-133 2-86 (192)
102 PRK14004 hisH imidazole glycer 97.4 0.00053 1.1E-08 54.0 7.0 48 85-133 37-88 (210)
103 cd03146 GAT1_Peptidase_E Type 97.3 0.00068 1.5E-08 53.5 6.5 49 84-133 79-130 (212)
104 PRK06278 cobyrinic acid a,c-di 97.2 0.00087 1.9E-08 59.0 6.6 45 84-133 35-81 (476)
105 COG0512 PabA Anthranilate/para 97.2 0.0024 5.2E-08 49.0 7.9 86 25-143 15-109 (191)
106 PRK05282 (alpha)-aspartyl dipe 97.1 0.0017 3.7E-08 51.9 6.9 51 84-134 78-130 (233)
107 TIGR00313 cobQ cobyric acid sy 97.1 0.0013 2.9E-08 58.1 6.8 49 84-132 283-334 (475)
108 PLN02347 GMP synthetase 97.1 0.0027 5.9E-08 56.8 8.6 90 10-133 12-102 (536)
109 PF09825 BPL_N: Biotin-protein 96.9 0.0053 1.1E-07 52.2 8.4 93 9-132 1-97 (367)
110 PRK00074 guaA GMP synthase; Re 96.9 0.0052 1.1E-07 54.9 8.8 88 9-133 4-91 (511)
111 cd01746 GATase1_CTP_Synthase T 96.9 0.0021 4.6E-08 51.5 5.6 47 84-133 54-100 (235)
112 PLN02771 carbamoyl-phosphate s 96.8 0.0046 9.9E-08 53.3 7.4 75 25-133 252-326 (415)
113 PRK09522 bifunctional glutamin 96.8 0.0052 1.1E-07 55.0 7.5 78 25-133 15-93 (531)
114 KOG3210 Imidazoleglycerol-phos 96.7 0.0033 7.1E-08 47.0 4.7 50 83-132 54-106 (226)
115 PRK11366 puuD gamma-glutamyl-g 96.6 0.0037 8E-08 50.7 4.8 49 85-133 61-123 (254)
116 PRK14607 bifunctional glutamin 96.5 0.008 1.7E-07 54.0 6.7 47 84-133 43-89 (534)
117 PRK06186 hypothetical protein; 96.5 0.0052 1.1E-07 48.9 4.8 48 83-133 51-100 (229)
118 PRK05368 homoserine O-succinyl 96.3 0.028 6.1E-07 46.7 8.6 57 77-133 91-151 (302)
119 PRK05380 pyrG CTP synthetase; 96.3 0.007 1.5E-07 53.7 5.2 46 84-132 342-387 (533)
120 cd01747 GATase1_Glutamyl_Hydro 96.0 0.02 4.3E-07 47.0 6.1 50 84-133 53-108 (273)
121 TIGR01823 PabB-fungal aminodeo 95.9 0.066 1.4E-06 50.0 9.7 47 84-133 52-102 (742)
122 COG0505 CarA Carbamoylphosphat 95.9 0.027 5.9E-07 47.2 6.4 55 77-133 212-266 (368)
123 PLN02327 CTP synthase 95.7 0.021 4.5E-07 51.0 5.3 48 83-133 360-407 (557)
124 COG2071 Predicted glutamine am 95.6 0.026 5.6E-07 44.9 5.1 50 84-133 59-123 (243)
125 TIGR00337 PyrG CTP synthase. C 95.4 0.026 5.6E-07 50.1 5.1 47 84-133 342-388 (525)
126 KOG3179 Predicted glutamine sy 95.3 0.12 2.7E-06 40.0 7.7 50 83-133 57-109 (245)
127 COG1492 CobQ Cobyric acid synt 95.2 0.073 1.6E-06 46.7 6.9 50 84-133 289-341 (486)
128 cd03129 GAT1_Peptidase_E_like 95.0 0.11 2.3E-06 40.9 6.8 50 84-133 79-130 (210)
129 PF13587 DJ-1_PfpI_N: N-termin 94.8 0.047 1E-06 30.6 3.2 27 9-35 1-38 (38)
130 PLN02889 oxo-acid-lyase/anthra 94.8 0.11 2.5E-06 49.3 7.5 48 84-133 130-178 (918)
131 PF03575 Peptidase_S51: Peptid 94.4 0.015 3.2E-07 43.4 0.7 80 26-133 4-85 (154)
132 COG0504 PyrG CTP synthase (UTP 94.4 0.093 2E-06 45.9 5.5 43 86-131 344-386 (533)
133 COG3442 Predicted glutamine am 94.4 0.046 1E-06 42.8 3.3 50 84-133 51-103 (250)
134 KOG2764 Putative transcription 94.0 0.036 7.8E-07 43.7 2.1 55 41-95 193-247 (247)
135 KOG0370 Multifunctional pyrimi 93.8 0.14 3E-06 48.3 5.6 54 75-133 203-256 (1435)
136 TIGR02069 cyanophycinase cyano 93.6 0.29 6.3E-06 39.6 6.7 49 84-132 81-131 (250)
137 PF07722 Peptidase_C26: Peptid 93.4 0.07 1.5E-06 42.2 2.9 50 84-133 57-122 (217)
138 KOG1907 Phosphoribosylformylgl 93.3 0.4 8.7E-06 45.1 7.8 105 9-146 1059-1175(1320)
139 cd03131 GATase1_HTS Type 1 glu 92.4 0.11 2.5E-06 39.6 2.6 56 77-132 54-113 (175)
140 COG4635 HemG Flavodoxin [Energ 92.2 0.77 1.7E-05 34.3 6.6 46 81-128 43-90 (175)
141 PRK02645 ppnK inorganic polyph 91.9 1.7 3.6E-05 36.3 9.3 88 8-128 3-93 (305)
142 KOG2387 CTP synthase (UTP-ammo 91.3 0.43 9.3E-06 41.4 5.1 45 84-131 362-406 (585)
143 COG3340 PepE Peptidase E [Amin 90.6 0.47 1E-05 37.2 4.4 51 84-134 83-135 (224)
144 cd03145 GAT1_cyanophycinase Ty 90.5 0.38 8.2E-06 38.1 3.9 50 84-133 82-133 (217)
145 PF09822 ABC_transp_aux: ABC-t 90.0 6.2 0.00013 32.1 10.8 72 83-161 195-267 (271)
146 PF08532 Glyco_hydro_42M: Beta 88.0 2.2 4.9E-05 33.3 6.6 59 22-121 30-88 (207)
147 COG4285 Uncharacterized conser 88.0 3.6 7.9E-05 32.4 7.4 89 10-129 2-94 (253)
148 PRK03708 ppnK inorganic polyph 87.4 5.8 0.00013 32.6 8.9 89 9-128 1-91 (277)
149 PRK11104 hemG protoporphyrinog 86.9 6.1 0.00013 30.1 8.3 42 83-126 44-87 (177)
150 cd03143 A4_beta-galactosidase_ 86.7 5.8 0.00013 29.2 7.9 60 22-122 26-85 (154)
151 PRK01231 ppnK inorganic polyph 86.4 7.4 0.00016 32.4 9.1 91 9-128 5-97 (295)
152 PRK02155 ppnK NAD(+)/NADH kina 86.4 7.7 0.00017 32.2 9.2 92 8-128 5-98 (291)
153 KOG0623 Glutamine amidotransfe 86.0 4.1 8.9E-05 34.4 7.2 49 85-133 39-90 (541)
154 KOG0026 Anthranilate synthase, 84.5 6.4 0.00014 29.7 7.0 62 83-147 61-132 (223)
155 PRK04539 ppnK inorganic polyph 84.0 16 0.00035 30.4 10.0 96 8-128 5-103 (296)
156 PRK03378 ppnK inorganic polyph 83.4 16 0.00035 30.3 9.8 95 8-131 5-102 (292)
157 PF03698 UPF0180: Uncharacteri 81.8 5.8 0.00013 26.1 5.3 21 22-42 8-28 (80)
158 PF06283 ThuA: Trehalose utili 79.4 10 0.00022 29.7 7.0 42 83-127 50-91 (217)
159 PRK09271 flavodoxin; Provision 78.9 23 0.0005 26.3 8.5 89 10-126 2-94 (160)
160 TIGR01001 metA homoserine O-su 78.7 4.4 9.6E-05 33.6 4.8 106 8-130 35-148 (300)
161 PLN02204 diacylglycerol kinase 77.9 3.9 8.5E-05 37.3 4.7 69 7-97 158-230 (601)
162 PRK03372 ppnK inorganic polyph 77.4 26 0.00056 29.3 9.1 101 8-128 5-107 (306)
163 KOG1224 Para-aminobenzoate (PA 77.1 5.4 0.00012 35.7 5.1 46 84-132 63-110 (767)
164 PRK03094 hypothetical protein; 75.6 12 0.00027 24.6 5.3 21 22-42 8-28 (80)
165 PF09897 DUF2124: Uncharacteri 75.4 6 0.00013 29.2 4.2 110 8-136 19-129 (147)
166 PRK13054 lipid kinase; Reviewe 73.8 5.8 0.00013 32.9 4.4 36 8-43 3-39 (300)
167 PRK11914 diacylglycerol kinase 72.5 9.6 0.00021 31.6 5.4 37 8-44 8-48 (306)
168 PRK02649 ppnK inorganic polyph 72.4 42 0.00092 28.0 9.2 103 9-131 2-107 (305)
169 PRK05568 flavodoxin; Provision 71.4 35 0.00075 24.5 9.0 42 84-125 47-90 (142)
170 COG0062 Uncharacterized conser 71.1 33 0.00072 26.9 7.8 119 9-138 50-172 (203)
171 PF09508 Lact_bio_phlase: Lact 70.5 20 0.00043 33.1 7.1 90 8-128 435-544 (716)
172 KOG4435 Predicted lipid kinase 69.7 3.7 8E-05 35.4 2.3 37 8-44 60-101 (535)
173 PRK14077 pnk inorganic polypho 69.3 44 0.00094 27.7 8.5 89 8-128 10-99 (287)
174 PRK06455 riboflavin synthase; 68.8 17 0.00036 27.2 5.3 36 9-44 2-39 (155)
175 PRK01911 ppnK inorganic polyph 68.1 54 0.0012 27.2 8.9 39 85-131 64-103 (292)
176 PRK06756 flavodoxin; Provision 67.6 45 0.00097 24.2 8.1 86 9-127 2-93 (148)
177 COG1058 CinA Predicted nucleot 65.6 14 0.00031 30.0 4.8 84 9-116 2-106 (255)
178 PRK13055 putative lipid kinase 65.3 9.8 0.00021 32.1 4.1 36 9-44 3-42 (334)
179 cd03142 GATase1_ThuA Type 1 gl 64.7 42 0.0009 26.6 7.2 73 25-127 26-98 (215)
180 PRK00286 xseA exodeoxyribonucl 64.2 18 0.0004 31.7 5.7 57 85-146 192-253 (438)
181 PRK03673 hypothetical protein; 63.2 26 0.00057 30.5 6.3 84 9-116 2-106 (396)
182 PF03853 YjeF_N: YjeF-related 62.9 7.7 0.00017 29.3 2.7 36 8-43 25-60 (169)
183 PF12682 Flavodoxin_4: Flavodo 62.8 3.5 7.7E-05 30.8 0.9 42 82-125 70-111 (156)
184 KOG1622 GMP synthase [Nucleoti 61.7 6.4 0.00014 34.5 2.3 43 84-133 58-104 (552)
185 PRK03670 competence damage-ind 59.5 32 0.00069 27.9 5.9 73 21-116 19-106 (252)
186 COG4242 CphB Cyanophycinase an 59.2 12 0.00026 30.3 3.3 50 83-132 104-155 (293)
187 PF04204 HTS: Homoserine O-suc 59.2 12 0.00025 31.2 3.4 53 77-129 90-146 (298)
188 PF12724 Flavodoxin_5: Flavodo 59.2 15 0.00032 26.7 3.7 44 82-127 40-85 (143)
189 COG4126 Hydantoin racemase [Am 59.2 68 0.0015 25.5 7.3 84 83-182 67-157 (230)
190 PRK04761 ppnK inorganic polyph 58.9 19 0.00041 29.2 4.4 40 81-128 21-60 (246)
191 cd05014 SIS_Kpsf KpsF-like pro 58.6 60 0.0013 22.6 8.5 39 84-127 46-84 (128)
192 PLN02958 diacylglycerol kinase 58.0 20 0.00043 32.1 4.8 38 7-44 110-152 (481)
193 COG4090 Uncharacterized protei 57.7 39 0.00085 24.5 5.3 49 84-135 84-133 (154)
194 PF11760 CbiG_N: Cobalamin syn 57.2 24 0.00052 23.5 4.0 71 107-198 2-78 (84)
195 TIGR01754 flav_RNR ribonucleot 56.7 20 0.00043 25.9 4.0 42 83-126 48-90 (140)
196 PRK02261 methylaspartate mutas 56.6 34 0.00075 24.8 5.2 38 8-45 3-41 (137)
197 TIGR00147 lipid kinase, YegS/R 55.7 19 0.00042 29.5 4.2 37 9-45 2-42 (293)
198 cd01481 vWA_collagen_alpha3-VI 55.5 34 0.00073 25.6 5.2 36 9-44 107-142 (165)
199 PRK14076 pnk inorganic polypho 55.4 94 0.002 28.5 8.8 39 85-131 348-387 (569)
200 PRK06703 flavodoxin; Provision 55.2 35 0.00077 24.8 5.2 43 84-126 47-91 (151)
201 PRK01372 ddl D-alanine--D-alan 54.9 50 0.0011 27.1 6.6 37 8-44 4-45 (304)
202 PRK01215 competence damage-ind 53.7 43 0.00093 27.3 5.8 85 8-116 3-108 (264)
203 PRK13337 putative lipid kinase 53.5 20 0.00044 29.6 4.0 36 9-44 2-41 (304)
204 PRK05569 flavodoxin; Provision 53.3 80 0.0017 22.5 8.3 42 84-126 47-92 (141)
205 PRK14817 NADH dehydrogenase su 52.9 29 0.00063 26.6 4.3 40 82-125 72-111 (181)
206 PF01058 Oxidored_q6: NADH ubi 52.6 21 0.00046 25.7 3.5 41 84-128 44-84 (131)
207 cd02067 B12-binding B12 bindin 52.1 46 0.00099 23.1 5.1 29 16-44 8-36 (119)
208 COG1570 XseA Exonuclease VII, 50.5 40 0.00086 29.7 5.3 58 84-146 192-254 (440)
209 PRK06934 flavodoxin; Provision 49.9 15 0.00032 29.2 2.5 43 82-126 126-168 (221)
210 PRK06411 NADH dehydrogenase su 49.7 34 0.00074 26.3 4.3 40 82-125 71-110 (183)
211 cd02071 MM_CoA_mut_B12_BD meth 49.6 43 0.00092 23.6 4.7 29 16-44 8-36 (122)
212 TIGR02370 pyl_corrinoid methyl 49.6 47 0.001 25.7 5.3 78 9-117 85-163 (197)
213 PRK03767 NAD(P)H:quinone oxido 49.5 86 0.0019 24.1 6.8 101 9-126 2-115 (200)
214 PRK06975 bifunctional uroporph 49.1 90 0.0019 29.2 7.8 97 8-135 3-100 (656)
215 PRK13059 putative lipid kinase 47.9 31 0.00068 28.5 4.2 36 9-44 2-41 (295)
216 PF07505 Gp37_Gp68: Phage prot 47.7 1.6E+02 0.0034 24.2 8.3 46 81-126 184-230 (261)
217 PRK13932 stationary phase surv 47.6 83 0.0018 25.6 6.5 38 8-46 5-42 (257)
218 PLN02935 Bifunctional NADH kin 47.6 1.8E+02 0.004 26.3 9.0 36 85-128 262-297 (508)
219 cd06305 PBP1_methylthioribose_ 47.2 40 0.00086 26.7 4.7 35 10-44 1-38 (273)
220 PF01975 SurE: Survival protei 47.1 46 0.00099 25.9 4.8 38 9-46 1-38 (196)
221 PF12641 Flavodoxin_3: Flavodo 46.7 27 0.00059 26.2 3.3 39 83-125 37-75 (160)
222 PF00885 DMRL_synthase: 6,7-di 46.6 45 0.00097 24.6 4.4 90 8-121 3-103 (144)
223 PLN02929 NADH kinase 46.6 1.1E+02 0.0024 25.5 7.2 35 84-127 63-97 (301)
224 COG1105 FruK Fructose-1-phosph 46.5 64 0.0014 27.1 5.8 47 83-131 127-173 (310)
225 PF12646 DUF3783: Domain of un 46.3 31 0.00067 21.0 3.0 28 13-40 3-30 (58)
226 TIGR02336 1,3-beta-galactosyl- 45.9 86 0.0019 29.3 6.8 87 10-127 440-546 (719)
227 cd02070 corrinoid_protein_B12- 45.8 35 0.00077 26.4 4.0 36 9-44 83-119 (201)
228 PRK06242 flavodoxin; Provision 45.0 38 0.00083 24.5 4.0 44 83-128 41-85 (150)
229 COG0061 nadF NAD kinase [Coenz 44.7 1.8E+02 0.0038 24.0 8.2 38 83-128 53-90 (281)
230 PF02601 Exonuc_VII_L: Exonucl 44.7 47 0.001 27.7 4.9 57 84-145 74-135 (319)
231 PRK14820 NADH dehydrogenase su 44.5 46 0.001 25.5 4.3 40 82-125 70-109 (180)
232 PRK10355 xylF D-xylose transpo 44.2 64 0.0014 26.9 5.6 37 8-44 25-64 (330)
233 PF02310 B12-binding: B12 bind 44.2 21 0.00045 24.7 2.3 35 10-44 2-37 (121)
234 PRK06249 2-dehydropantoate 2-r 44.0 1.1E+02 0.0024 25.3 7.0 39 84-127 71-109 (313)
235 PF13380 CoA_binding_2: CoA bi 43.3 1.1E+02 0.0024 21.3 9.5 88 9-126 1-88 (116)
236 cd00587 HCP_like The HCP famil 42.6 72 0.0016 26.0 5.3 86 86-195 95-180 (258)
237 cd06318 PBP1_ABC_sugar_binding 42.5 40 0.00086 26.9 4.0 34 10-43 1-37 (282)
238 PLN02727 NAD kinase 42.4 1.4E+02 0.0031 29.1 7.9 40 84-131 742-782 (986)
239 PRK12779 putative bifunctional 41.9 1.2E+02 0.0025 29.8 7.5 131 8-143 306-475 (944)
240 cd06310 PBP1_ABC_sugar_binding 41.5 54 0.0012 25.9 4.6 34 10-43 1-37 (273)
241 PRK14075 pnk inorganic polypho 41.4 1.9E+02 0.0041 23.4 8.3 72 10-128 2-73 (256)
242 PRK13302 putative L-aspartate 40.9 2E+02 0.0043 23.5 8.1 36 84-127 66-101 (271)
243 cd01475 vWA_Matrilin VWA_Matri 40.8 70 0.0015 25.0 5.1 36 9-44 109-144 (224)
244 PRK00561 ppnK inorganic polyph 40.7 45 0.00098 27.2 4.0 37 84-128 32-68 (259)
245 PRK14652 UDP-N-acetylenolpyruv 40.3 1.1E+02 0.0024 25.5 6.4 73 102-191 44-116 (302)
246 PF10034 Dpy19: Q-cell neurobl 40.3 14 0.00031 34.2 1.2 46 101-149 503-548 (642)
247 cd01473 vWA_CTRP CTRP for CS 40.1 67 0.0015 24.6 4.8 36 9-44 109-148 (192)
248 PRK08811 uroporphyrinogen-III 39.9 1.2E+02 0.0026 24.6 6.5 98 6-135 16-114 (266)
249 PRK13934 stationary phase surv 39.7 1.4E+02 0.003 24.6 6.6 36 10-46 2-37 (266)
250 cd05008 SIS_GlmS_GlmD_1 SIS (S 39.7 88 0.0019 21.6 5.1 39 84-127 45-83 (126)
251 PRK01185 ppnK inorganic polyph 39.5 2.1E+02 0.0046 23.4 8.2 33 85-128 52-84 (271)
252 cd01538 PBP1_ABC_xylose_bindin 39.5 54 0.0012 26.5 4.4 84 10-124 1-87 (288)
253 TIGR01957 nuoB_fam NADH-quinon 39.4 49 0.0011 24.4 3.7 40 82-125 54-93 (145)
254 TIGR02990 ectoine_eutA ectoine 39.4 1.1E+02 0.0025 24.5 6.1 102 8-135 120-226 (239)
255 TIGR03294 FrhG coenzyme F420 h 38.8 66 0.0014 25.6 4.6 38 84-125 49-86 (228)
256 TIGR02667 moaB_proteo molybden 38.7 1E+02 0.0022 23.0 5.5 35 8-42 4-42 (163)
257 PLN03049 pyridoxine (pyridoxam 38.5 1.6E+02 0.0034 26.3 7.3 36 9-44 60-95 (462)
258 cd01482 vWA_collagen_alphaI-XI 38.3 91 0.002 22.9 5.2 37 8-44 103-139 (164)
259 COG1597 LCB5 Sphingosine kinas 38.2 1.4E+02 0.0031 24.7 6.8 37 9-45 3-43 (301)
260 cd04795 SIS SIS domain. SIS (S 37.8 96 0.0021 19.6 4.7 35 85-124 47-81 (87)
261 PRK01966 ddl D-alanyl-alanine 37.4 1.2E+02 0.0026 25.4 6.3 38 8-45 3-45 (333)
262 COG1832 Predicted CoA-binding 37.4 1.7E+02 0.0036 21.5 8.2 84 8-119 16-99 (140)
263 cd00885 cinA Competence-damage 37.4 59 0.0013 24.6 4.0 33 85-117 58-105 (170)
264 PRK05788 cobalamin biosynthesi 36.9 1.9E+02 0.0041 24.3 7.3 75 104-199 39-119 (315)
265 cd06312 PBP1_ABC_sugar_binding 36.9 74 0.0016 25.2 4.8 85 10-125 1-90 (271)
266 TIGR03702 lip_kinase_YegS lipi 36.1 64 0.0014 26.5 4.3 33 11-43 2-35 (293)
267 PRK13903 murB UDP-N-acetylenol 36.1 2.5E+02 0.0054 24.2 7.9 74 102-194 41-117 (363)
268 PRK13906 murB UDP-N-acetylenol 35.5 1.4E+02 0.003 25.0 6.3 72 102-191 45-116 (307)
269 PF09558 DUF2375: Protein of u 35.4 30 0.00066 21.8 1.7 16 113-128 42-57 (71)
270 PRK00861 putative lipid kinase 34.7 1.3E+02 0.0029 24.7 6.0 34 9-43 3-40 (300)
271 PF02441 Flavoprotein: Flavopr 34.6 97 0.0021 21.9 4.6 35 9-43 1-35 (129)
272 PF00781 DAGK_cat: Diacylglyce 34.4 62 0.0013 22.9 3.5 90 10-132 1-98 (130)
273 PRK10499 PTS system N,N'-diace 34.3 1.6E+02 0.0034 20.3 5.8 33 8-40 3-36 (106)
274 PRK14814 NADH dehydrogenase su 33.9 77 0.0017 24.5 4.0 40 82-125 70-109 (186)
275 TIGR00441 gmhA phosphoheptose 33.8 1.3E+02 0.0027 22.1 5.2 37 84-125 78-114 (154)
276 TIGR01753 flav_short flavodoxi 33.7 1.7E+02 0.0036 20.5 6.2 43 84-127 44-90 (140)
277 PRK14815 NADH dehydrogenase su 33.5 81 0.0018 24.3 4.1 40 82-125 70-109 (183)
278 TIGR00087 surE 5'/3'-nucleotid 33.2 1.9E+02 0.0041 23.3 6.5 36 10-46 2-37 (244)
279 cd01472 vWA_collagen von Wille 33.1 1.4E+02 0.003 21.8 5.4 37 8-44 103-139 (164)
280 PRK05752 uroporphyrinogen-III 32.8 2.6E+02 0.0055 22.3 7.3 97 8-135 3-102 (255)
281 PF13580 SIS_2: SIS domain; PD 32.1 94 0.002 22.3 4.2 36 83-123 101-136 (138)
282 cd02774 MopB_Res-Cmplx1_Nad11- 32.0 3.3E+02 0.0071 23.4 8.5 98 8-125 87-186 (366)
283 PRK10653 D-ribose transporter 32.0 1.2E+02 0.0027 24.4 5.4 37 8-44 26-65 (295)
284 COG1182 AcpD Acyl carrier prot 32.0 2.2E+02 0.0047 22.4 6.3 52 85-143 87-138 (202)
285 cd05710 SIS_1 A subgroup of th 31.8 1.2E+02 0.0026 21.1 4.7 38 85-127 47-84 (120)
286 PLN02918 pyridoxine (pyridoxam 31.8 1.9E+02 0.0041 26.5 6.7 36 9-44 136-171 (544)
287 PRK05320 rhodanese superfamily 31.4 1.2E+02 0.0027 24.5 5.2 63 106-174 162-234 (257)
288 COG4874 Uncharacterized protei 31.3 2.9E+02 0.0063 22.5 7.2 77 21-118 56-132 (318)
289 cd00860 ThrRS_anticodon ThrRS 31.1 1E+02 0.0023 19.7 4.1 33 9-41 2-34 (91)
290 PRK09444 pntB pyridine nucleot 30.9 95 0.0021 27.5 4.6 66 22-96 324-392 (462)
291 COG0041 PurE Phosphoribosylcar 30.9 1.2E+02 0.0026 22.7 4.5 39 9-47 3-43 (162)
292 TIGR02922 conserved hypothetic 30.9 34 0.00075 21.2 1.4 16 113-128 40-55 (67)
293 cd05017 SIS_PGI_PMI_1 The memb 30.9 1.3E+02 0.0029 20.8 4.7 39 84-127 42-80 (119)
294 PRK14816 NADH dehydrogenase su 30.5 1.1E+02 0.0023 23.6 4.3 40 82-125 78-117 (182)
295 TIGR00853 pts-lac PTS system, 30.2 1.7E+02 0.0038 19.6 7.4 82 8-128 3-86 (95)
296 PRK05571 ribose-5-phosphate is 29.8 77 0.0017 23.5 3.4 70 116-199 61-130 (148)
297 cd02065 B12-binding_like B12 b 29.4 1.5E+02 0.0032 20.4 4.8 33 12-44 4-36 (125)
298 PRK07239 bifunctional uroporph 29.3 2.9E+02 0.0062 23.6 7.4 102 3-134 6-116 (381)
299 COG1587 HemD Uroporphyrinogen- 29.3 1.3E+02 0.0029 24.0 5.0 96 9-135 2-98 (248)
300 PRK07308 flavodoxin; Validated 29.2 2E+02 0.0043 20.7 5.6 41 84-126 47-91 (146)
301 COG1941 FrhG Coenzyme F420-red 29.1 1.3E+02 0.0028 24.3 4.7 37 85-127 51-87 (247)
302 PRK00549 competence damage-ind 28.8 89 0.0019 27.3 4.2 83 10-116 2-105 (414)
303 TIGR00237 xseA exodeoxyribonuc 28.7 1.4E+02 0.0031 26.2 5.5 56 85-145 187-247 (432)
304 TIGR00689 rpiB_lacA_lacB sugar 28.4 97 0.0021 22.8 3.7 68 117-199 59-127 (144)
305 cd08195 DHQS Dehydroquinate sy 28.2 1.5E+02 0.0033 25.0 5.5 98 8-127 24-121 (345)
306 COG2242 CobL Precorrin-6B meth 28.2 1.4E+02 0.0031 23.1 4.7 35 85-125 102-136 (187)
307 PRK00414 gmhA phosphoheptose i 28.2 1.3E+02 0.0029 23.0 4.7 38 84-126 110-147 (192)
308 PRK10310 PTS system galactitol 28.2 1.7E+02 0.0037 19.6 4.7 34 9-42 3-38 (94)
309 PLN03050 pyridoxine (pyridoxam 28.0 1.5E+02 0.0032 23.9 5.1 35 9-43 61-95 (246)
310 TIGR01120 rpiB ribose 5-phosph 27.6 94 0.002 22.9 3.5 69 117-199 60-128 (143)
311 PRK12613 galactose-6-phosphate 27.5 88 0.0019 23.0 3.3 69 116-199 57-126 (141)
312 KOG3855 Monooxygenase involved 27.5 39 0.00085 29.6 1.7 19 77-95 28-46 (481)
313 PRK14649 UDP-N-acetylenolpyruv 27.4 1.7E+02 0.0036 24.4 5.4 73 102-191 29-103 (295)
314 COG0812 MurB UDP-N-acetylmuram 27.2 3.4E+02 0.0074 22.6 7.0 74 102-191 29-102 (291)
315 cd06319 PBP1_ABC_sugar_binding 26.5 1.2E+02 0.0026 23.9 4.4 35 10-44 1-38 (277)
316 cd06320 PBP1_allose_binding Pe 26.4 1.3E+02 0.0027 23.8 4.5 34 10-43 1-37 (275)
317 PLN02522 ATP citrate (pro-S)-l 26.3 62 0.0013 29.9 2.8 42 84-129 221-262 (608)
318 cd06322 PBP1_ABC_sugar_binding 26.3 1.3E+02 0.0028 23.6 4.5 33 11-43 2-37 (267)
319 TIGR00685 T6PP trehalose-phosp 26.2 95 0.0021 24.7 3.7 43 85-127 9-51 (244)
320 PRK12436 UDP-N-acetylenolpyruv 26.1 2E+02 0.0043 24.0 5.6 82 85-192 36-117 (305)
321 PF01380 SIS: SIS domain SIS d 26.0 1.5E+02 0.0033 20.3 4.4 37 85-126 53-89 (131)
322 cd06315 PBP1_ABC_sugar_binding 26.0 1.8E+02 0.0039 23.2 5.4 35 9-43 1-38 (280)
323 cd02069 methionine_synthase_B1 25.9 1.8E+02 0.0039 22.8 5.1 37 9-45 89-126 (213)
324 cd05006 SIS_GmhA Phosphoheptos 25.9 1.6E+02 0.0035 22.0 4.7 38 84-126 100-137 (177)
325 PRK13937 phosphoheptose isomer 25.7 1.6E+02 0.0035 22.4 4.8 37 84-125 105-141 (188)
326 PRK02231 ppnK inorganic polyph 25.6 1E+02 0.0023 25.3 3.8 36 85-128 42-77 (272)
327 cd01477 vWA_F09G8-8_type VWA F 25.5 1.8E+02 0.004 22.3 5.0 38 8-45 131-171 (193)
328 PRK12419 riboflavin synthase s 25.3 59 0.0013 24.4 2.1 36 8-43 10-51 (158)
329 PRK13905 murB UDP-N-acetylenol 24.6 2E+02 0.0044 23.8 5.4 74 102-192 39-112 (298)
330 PRK04885 ppnK inorganic polyph 24.4 1.3E+02 0.0029 24.6 4.2 36 85-128 35-72 (265)
331 PRK09130 NADH dehydrogenase su 24.2 2.9E+02 0.0062 26.1 6.8 96 8-125 305-402 (687)
332 PF11382 DUF3186: Protein of u 24.1 1.6E+02 0.0034 24.7 4.7 31 8-38 83-113 (308)
333 PRK13938 phosphoheptose isomer 23.8 2E+02 0.0043 22.3 4.9 40 83-127 111-150 (196)
334 PRK14653 UDP-N-acetylenolpyruv 23.7 1.7E+02 0.0036 24.4 4.7 71 102-191 42-112 (297)
335 cd06295 PBP1_CelR Ligand bindi 23.7 2.6E+02 0.0056 22.0 5.9 37 8-44 3-49 (275)
336 PF11823 DUF3343: Protein of u 23.6 1.9E+02 0.004 18.2 4.0 32 11-44 3-34 (73)
337 cd02068 radical_SAM_B12_BD B12 23.5 77 0.0017 22.2 2.4 65 22-116 3-68 (127)
338 CHL00023 ndhK NADH dehydrogena 23.3 1.8E+02 0.0038 23.3 4.5 40 82-125 68-107 (225)
339 cd07766 DHQ_Fe-ADH Dehydroquin 23.2 4E+02 0.0086 22.2 7.0 38 84-127 77-114 (332)
340 TIGR01118 lacA galactose-6-pho 23.2 1.2E+02 0.0026 22.3 3.3 69 116-199 58-127 (141)
341 cd08197 DOIS 2-deoxy-scyllo-in 23.0 2.7E+02 0.0059 23.8 6.0 96 9-126 24-119 (355)
342 PF13552 DUF4127: Protein of u 22.9 5.6E+02 0.012 23.1 8.4 123 13-142 230-379 (497)
343 cd00363 PFK Phosphofructokinas 22.8 2.3E+02 0.005 24.0 5.5 63 89-159 5-67 (338)
344 COG3075 GlpB Anaerobic glycero 22.8 1.5E+02 0.0033 25.4 4.2 37 8-44 138-174 (421)
345 COG0205 PfkA 6-phosphofructoki 22.5 3.6E+02 0.0079 23.1 6.5 64 88-159 6-69 (347)
346 PRK08621 galactose-6-phosphate 22.4 1.1E+02 0.0025 22.4 3.1 69 116-199 58-127 (142)
347 TIGR03127 RuMP_HxlB 6-phospho 22.4 3.3E+02 0.0072 20.2 9.0 38 84-126 71-108 (179)
348 PTZ00188 adrenodoxin reductase 22.4 2.7E+02 0.0059 25.2 6.0 37 8-47 39-75 (506)
349 cd06316 PBP1_ABC_sugar_binding 22.3 1.6E+02 0.0035 23.6 4.4 33 10-42 1-36 (294)
350 PF01513 NAD_kinase: ATP-NAD k 22.2 74 0.0016 26.1 2.4 38 83-128 74-111 (285)
351 PRK14819 NADH dehydrogenase su 22.1 1.8E+02 0.0039 23.7 4.4 40 82-125 68-107 (264)
352 PRK00061 ribH 6,7-dimethyl-8-r 22.1 1.1E+02 0.0023 22.9 3.0 36 8-43 12-53 (154)
353 KOG2807 RNA polymerase II tran 22.1 2E+02 0.0043 24.4 4.7 43 3-45 158-203 (378)
354 smart00115 CASc Caspase, inter 22.0 2.3E+02 0.0049 22.6 5.1 36 8-43 7-51 (241)
355 PRK07116 flavodoxin; Provision 21.9 94 0.002 22.9 2.7 41 83-125 74-114 (160)
356 TIGR01357 aroB 3-dehydroquinat 21.9 2E+02 0.0044 24.2 5.0 37 84-126 80-116 (344)
357 cd06300 PBP1_ABC_sugar_binding 21.8 1.7E+02 0.0037 23.0 4.4 29 10-38 1-35 (272)
358 PRK13935 stationary phase surv 21.1 4.6E+02 0.01 21.3 6.7 36 10-46 2-37 (253)
359 cd06323 PBP1_ribose_binding Pe 21.0 1.7E+02 0.0036 22.9 4.2 34 11-44 2-38 (268)
360 PRK08040 putative semialdehyde 20.9 5.2E+02 0.011 21.9 7.8 91 8-121 4-94 (336)
361 PF04024 PspC: PspC domain; I 20.8 59 0.0013 20.1 1.1 13 116-128 9-21 (61)
362 COG3233 Predicted deacetylase 20.7 1.8E+02 0.004 23.2 4.1 44 78-121 27-71 (233)
363 PRK11253 ldcA L,D-carboxypepti 20.6 5E+02 0.011 21.6 7.1 32 9-40 2-35 (305)
364 PRK14650 UDP-N-acetylenolpyruv 20.4 1.9E+02 0.0041 24.2 4.4 72 102-191 41-113 (302)
365 KOG1494 NAD-dependent malate d 20.3 5.3E+02 0.011 21.7 8.2 119 8-141 28-170 (345)
366 cd06355 PBP1_FmdD_like Peripla 20.1 4E+02 0.0088 22.1 6.5 54 83-144 186-246 (348)
No 1
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=100.00 E-value=4.8e-36 Score=228.29 Aligned_cols=166 Identities=42% Similarity=0.731 Sum_probs=151.4
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL 89 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 89 (219)
||+|++++||++.|+..+.++|+.+|+++.++|++++ ++.++.|..+.++.++++.++.+||+|
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~----------------~v~~~~g~~i~~~~~~~~~~~~~~D~v 64 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG----------------TTVGKHGYSVTVDATIDEVNPEEYDAL 64 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC----------------ceeccCCceeeccCChhhCCHHHCcEE
Confidence 6999999999999999999999999999999998775 567788999999999988876789999
Q ss_pred EEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEE
Q 027785 90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVV 169 (219)
Q Consensus 90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~ 169 (219)
+||||.++..+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++.+..+.+.+ .+|+
T Consensus 65 vv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~---~~v~ 141 (166)
T TIGR01382 65 VIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIE---VVVV 141 (166)
T ss_pred EECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCC---CEEE
Confidence 9999987655567889999999999999999999999999999999999999999999999998888887743 3899
Q ss_pred cCCeEeCCCCCCHHHHHHHHHHHHc
Q 027785 170 DGNIITGATYEGHPEFIRLFLKALG 194 (219)
Q Consensus 170 dg~liT~~g~~s~~~~~l~li~~l~ 194 (219)
|||+|||+|+.++.+|+.++++.|.
T Consensus 142 dg~iiT~~~~~~~~~fa~~~~~~l~ 166 (166)
T TIGR01382 142 DGNLVTSRVPDDLPAFNREFLKLLG 166 (166)
T ss_pred ECCEEEeCCcccHHHHHHHHHHHhC
Confidence 9999999999999999999999863
No 2
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=2.8e-35 Score=226.99 Aligned_cols=180 Identities=54% Similarity=0.984 Sum_probs=151.0
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL 89 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 89 (219)
||+|+++||+++.|+..|+++|+++|++++++|+++++.++.........+.+.+....|..+.++.+++++++.+||+|
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 80 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL 80 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence 69999999999999999999999999999999999874322111111111122344456888999999998877789999
Q ss_pred EEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEE
Q 027785 90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVV 169 (219)
Q Consensus 90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~ 169 (219)
+||||.++..+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++.+..+.+.. +++
T Consensus 81 iv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~----~v~ 156 (180)
T cd03169 81 VIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDG----VVV 156 (180)
T ss_pred EEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHcCccCCCEEecccchHHHHHHCCCEEeecc----EEE
Confidence 9999987655556789999999999999999999999999999999999999999999999998766665543 889
Q ss_pred cCCeEeCCCCCCHHHHHHHHHHHH
Q 027785 170 DGNIITGATYEGHPEFIRLFLKAL 193 (219)
Q Consensus 170 dg~liT~~g~~s~~~~~l~li~~l 193 (219)
|||+|||+|+.++.+|+.++++.|
T Consensus 157 D~~iiT~~~~~~~~~f~~~~~~~l 180 (180)
T cd03169 157 DGNLVTAQAWPDHPAFLREFLKLL 180 (180)
T ss_pred ECCEEEecCCchHHHHHHHHHHhC
Confidence 999999999999999999999864
No 3
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=100.00 E-value=1.6e-35 Score=224.65 Aligned_cols=162 Identities=36% Similarity=0.587 Sum_probs=143.5
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV 90 (219)
Q Consensus 11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li 90 (219)
|+|+++|||++.|+..+.++|+.+||+++++|+++++ ...++.|..+.++..+++.++.+||+|+
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~~---------------~~~~~~g~~v~~~~~~~~~~~~~~D~li 65 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKL---------------AVGSSHGIKVKADKTLSDVNLDDYDAIV 65 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCCc---------------eEeccCCCEEEecCCHhHcCCCCCCEEE
Confidence 6899999999999999999999999999999998763 2335789999999999988777999999
Q ss_pred EcCCC-CcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEE
Q 027785 91 IPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVV 169 (219)
Q Consensus 91 ipGG~-~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~ 169 (219)
||||. ++..+..++.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+ .+.++.+.. +|+
T Consensus 66 ipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~aglL~g~~~T~~~~~~~~~--~~~~~~~~~----~v~ 139 (163)
T cd03135 66 IPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCYPGFEDKL--GGANYVDEP----VVV 139 (163)
T ss_pred ECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHcCCcCCCeEEECchHHHhc--CCCeEecCC----EEE
Confidence 99998 55556678999999999999999999999999999999999999999998876555 345565553 899
Q ss_pred cCCeEeCCCCCCHHHHHHHHHHHH
Q 027785 170 DGNIITGATYEGHPEFIRLFLKAL 193 (219)
Q Consensus 170 dg~liT~~g~~s~~~~~l~li~~l 193 (219)
|||+|||+|+.++.|+++++|+++
T Consensus 140 dg~l~T~~g~~s~~d~al~li~~l 163 (163)
T cd03135 140 DGNIITSRGPGTAFEFALKIVEAL 163 (163)
T ss_pred ECCEEEcCCcccHHHHHHHHHHhC
Confidence 999999999999999999999874
No 4
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=100.00 E-value=1.6e-35 Score=225.23 Aligned_cols=162 Identities=40% Similarity=0.690 Sum_probs=148.5
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCC-CCCCCCCCcccccCCCcceeccccCC-ccccccCccCCCCCCcc
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG-KKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPTKYD 87 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~D 87 (219)
||+|+++|||++.|+..+.++|+.+|+++++++++ ++ ++.++.|. .+.++..+++.++.+||
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~----------------~v~~~~g~~~i~~d~~~~~~~~~~~D 64 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG----------------EIQGKHGYDTVTVDLTIADVDADDYD 64 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc----------------ccccCcCceeecCCCChHHCCHHHCC
Confidence 69999999999999999999999999999999998 55 57778898 99999999887767899
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceE
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC 167 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~ 167 (219)
+|+||||.++..+..++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++.+.++.+.. +
T Consensus 65 ~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~----~ 140 (165)
T cd03134 65 ALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEE----V 140 (165)
T ss_pred EEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCC----E
Confidence 999999986655567899999999999999999999999999999999999999999999999998877777654 8
Q ss_pred EEcCCeEeCCCCCCHHHHHHHHHH
Q 027785 168 VVDGNIITGATYEGHPEFIRLFLK 191 (219)
Q Consensus 168 v~dg~liT~~g~~s~~~~~l~li~ 191 (219)
++|||+|||+|+.++.+|+..+++
T Consensus 141 v~dg~iiT~~~~~~~~~f~~~~~~ 164 (165)
T cd03134 141 VVDGNLITSRNPDDLPAFNRAILK 164 (165)
T ss_pred EEECCEEEecCcchHHHHHHHHHh
Confidence 999999999999999999999986
No 5
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=100.00 E-value=3.6e-35 Score=226.04 Aligned_cols=170 Identities=30% Similarity=0.476 Sum_probs=146.6
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEE--ecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDA--ACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
||+|+++|||++.|+..+.++|+.+|+++++ +|++++. ++.++.|..+.++..+++.+..+||
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~---------------~v~~~~g~~v~~~~~~~~~~~~~~D 65 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKL---------------PVKGSRGVKILADASLEDVDLEEFD 65 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCc---------------ceEcCCCCEEeCCCCHHHCCcccCC
Confidence 6999999999999999999999999987776 8887542 5778889999999999887667899
Q ss_pred EEEEcCCCC-cccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcce
Q 027785 88 GLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA 166 (219)
Q Consensus 88 ~liipGG~~-~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~ 166 (219)
+|+||||.. ...+..++.+.+||+++++++++|+++|+|+++||++|+|+||++|+||...+.+.+. .+.... .
T Consensus 66 ~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aGlL~g~~~T~~~~~~~~~~~~--~~~~~~---~ 140 (179)
T TIGR01383 66 AIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAAGVLLGKKATCYPGFKEKLLNG--NYSVNE---A 140 (179)
T ss_pred EEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhcCCCCCCcEEECccHHHhccCC--ceeCCC---C
Confidence 999999964 4445678999999999999999999999999999999999999999999877655432 343233 4
Q ss_pred EEEcCCeEeCCCCCCHHHHHHHHHHHHcccccc
Q 027785 167 CVVDGNIITGATYEGHPEFIRLFLKALGGTITG 199 (219)
Q Consensus 167 ~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~ 199 (219)
+++||+++||+|+.++.++++++|+++.|+...
T Consensus 141 ~v~dg~i~T~~g~~a~~d~~l~li~~~~g~~~a 173 (179)
T TIGR01383 141 VVVDGNIITSRGPGTAIEFALALVELLCGKEKA 173 (179)
T ss_pred EEEeCCEEECCChhhHHHHHHHHHHHhcCHHHH
Confidence 899999999999999999999999999887543
No 6
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=4.1e-35 Score=227.29 Aligned_cols=170 Identities=19% Similarity=0.278 Sum_probs=151.1
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCC-------CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCC
Q 027785 11 VLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP 83 (219)
Q Consensus 11 v~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 83 (219)
|+|+++|||++.|+..+.++|+.+| +++.++|++++ ++.++.|.++.+|..+++ .
T Consensus 1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~----------------~v~~~~g~~v~~d~~~~~--~ 62 (187)
T cd03137 1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG----------------PVRSSSGLSLVADAGLDA--L 62 (187)
T ss_pred CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC----------------ceeecCCcEEEcCcCccc--c
Confidence 6899999999999999999999988 89999999876 678889999999998874 3
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH-CCCeEecCC
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEPE 162 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~-~g~~~~~~~ 162 (219)
.+||+|+||||.+......++.+.+||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++ +|...+..+
T Consensus 63 ~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~ 142 (187)
T cd03137 63 AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPD 142 (187)
T ss_pred CCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecC
Confidence 5899999999987655677899999999999999999999999999999999999999999999999988 565555433
Q ss_pred CcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc
Q 027785 163 TMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS 200 (219)
Q Consensus 163 ~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~ 200 (219)
. .+++||+++||+|+.++.|+++++|+++.|+..++
T Consensus 143 ~--~~v~dg~i~Ta~g~~~~~d~~l~li~~~~g~~~a~ 178 (187)
T cd03137 143 V--LYVDDGNVWTSAGVTAGIDLCLHLVREDLGAAVAN 178 (187)
T ss_pred C--EEEecCCEEEcccHHHHHHHHHHHHHHHhCHHHHH
Confidence 2 38899999999999999999999999988875544
No 7
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=3.1e-35 Score=227.16 Aligned_cols=174 Identities=24% Similarity=0.291 Sum_probs=152.7
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCC-----CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785 11 VLLLCGDYMEDYEAMVPFQALLAFG-----VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 85 (219)
Q Consensus 11 v~il~~~g~~~~e~~~~~~~l~~ag-----~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 85 (219)
|+|+++|||++.|+..+.++|+.+| +++.++|++++ ++.++.|..+.+|.++++. .+
T Consensus 1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~----------------~v~~~~g~~i~~d~~~~~~--~~ 62 (183)
T cd03139 1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG----------------PVSSRSGLTVLPDTSFADP--PD 62 (183)
T ss_pred CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC----------------ceEeCCCCEEcCCcccccC--CC
Confidence 6899999999999999999999999 99999999876 6788899999999998864 48
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcc
Q 027785 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA 165 (219)
Q Consensus 86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~ 165 (219)
||+|+||||.++..+..++.+++||+++++++|+|+++|+|+++|+++|+|+|+++|+||...+.+++.+..+....
T Consensus 63 ~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~--- 139 (183)
T cd03139 63 LDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDA--- 139 (183)
T ss_pred CCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCC---
Confidence 99999999987665678899999999999999999999999999999999999999999999999988644432222
Q ss_pred eEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEE
Q 027785 166 ACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRIL 205 (219)
Q Consensus 166 ~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~ 205 (219)
.+++||+++||+|+.++.++++++|+++.++...+ ++.++
T Consensus 140 ~~v~dg~i~T~~g~~a~~~~~l~ii~~~~g~~~a~~~a~~~~ 181 (183)
T cd03139 140 RWVVDGNIWTSGGVSAGIDMALALVARLFGEELAQAVALLIE 181 (183)
T ss_pred EEEecCCEEEcCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhc
Confidence 48999999999999999999999999988885544 44433
No 8
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=100.00 E-value=1.6e-34 Score=223.69 Aligned_cols=167 Identities=16% Similarity=0.165 Sum_probs=148.3
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCC-------CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCC
Q 027785 11 VLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP 83 (219)
Q Consensus 11 v~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 83 (219)
|+|+++|||+..|+..++|+|+.++ |+++++|.+++ ++.++.|.++.+|..+.+.
T Consensus 1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~----------------~v~~~~g~~i~~d~~~~~~-- 62 (185)
T cd03136 1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA----------------PVTSSNGLRVAPDAALEDA-- 62 (185)
T ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC----------------eeecCCCcEEeCCcccccc--
Confidence 6899999999999999999999875 88999998875 6788889999999988754
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH-CCC-eEecC
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGA-SWIEP 161 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~-~g~-~~~~~ 161 (219)
.+||+|+||||.+.. ...++.+++||++++++++.|+++|+|+++|+++|+|+|+++|+||...+.+++ +|. ++.+.
T Consensus 63 ~~~D~liipgg~~~~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~ 141 (185)
T cd03136 63 PPLDYLFVVGGLGAR-RAVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRD 141 (185)
T ss_pred CCCCEEEEeCCCCcc-ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHccccCCCeeEECcccHHHHHHHCCCCccccC
Confidence 589999999997665 678899999999999999999999999999999999999999999999999987 444 44333
Q ss_pred CCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc
Q 027785 162 ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS 200 (219)
Q Consensus 162 ~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~ 200 (219)
.++.||++||++|+.+++++++++++++.++..++
T Consensus 142 ----~~v~dg~i~Ta~g~~~~~d~~l~ii~~~~g~~~a~ 176 (185)
T cd03136 142 ----LFEIDGDRLTCAGGTAALDLMLELIARDHGAALAA 176 (185)
T ss_pred ----eEEEcCCEEEeccHHHHHHHHHHHHHHHhCHHHHH
Confidence 38899999999999999999999999998886544
No 9
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=100.00 E-value=4.2e-34 Score=239.22 Aligned_cols=183 Identities=21% Similarity=0.302 Sum_probs=157.5
Q ss_pred CCCCCCCCCEEEEEecCCCCchhhHHHHHHHHhCC-------CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccc
Q 027785 1 MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFA 73 (219)
Q Consensus 1 ~~~~~~~~~kv~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 73 (219)
|++|+ +++|+|+++|||+..|+..+.|+|+.++ |++++++.+++ ++.++.|..+.
T Consensus 4 ~~~~~--~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~----------------~v~ss~g~~i~ 65 (322)
T PRK09393 4 MMTMH--NHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG----------------PLRAAGGITVV 65 (322)
T ss_pred ccccc--ccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC----------------ceEeCCCcEEe
Confidence 66777 7899999999999999999999997653 68889998775 68889999999
Q ss_pred cccCccCCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH
Q 027785 74 LNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA 153 (219)
Q Consensus 74 ~~~~~~~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~ 153 (219)
+|..+++. ++||+||||||.+... ..++.+.+||+++++++++|++||+|+++||++|+|+|+++|+||...+.+++
T Consensus 66 ~d~~~~~~--~~~D~livpGg~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~Tth~~~~~~~~~ 142 (322)
T PRK09393 66 ADGGLELL--DRADTIVIPGWRGPDA-PVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRATTHWRYAERLQA 142 (322)
T ss_pred CCCCcccc--CCCCEEEECCCCcccc-cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCeeeecHhhHHHHHH
Confidence 99999864 5899999999976543 45889999999999999999999999999999999999999999999999987
Q ss_pred -CCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEE
Q 027785 154 -AGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILF 206 (219)
Q Consensus 154 -~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~ 206 (219)
+|...+..+. .+++|||++||+|..++.+++++++++..+....+ ++.+++
T Consensus 143 ~~p~~~~~~~~--~~v~~g~iiT~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~ 196 (322)
T PRK09393 143 RYPAIRVDPDV--LYVDEGQILTSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVV 196 (322)
T ss_pred HCCCCEEeCCc--eEEecCCEEecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCc
Confidence 6766655542 48899999999999999999999999888775444 444444
No 10
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=100.00 E-value=1.7e-33 Score=214.30 Aligned_cols=158 Identities=25% Similarity=0.348 Sum_probs=135.7
Q ss_pred EecCCCCchhhHHHHHHHHhCC-------CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 14 LCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 14 l~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
|++|||+..|++.+.|+|+.++ |++.+++.+++ ++.++.|..+.++..+++. .++
T Consensus 1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~----------------~v~~s~g~~i~~~~~~~~~--~~~ 62 (166)
T PF13278_consen 1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG----------------PVTSSSGLRIQPDGSLDDA--PDF 62 (166)
T ss_dssp EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC----------------EEEBTTSEEEEESEETCCC--SCC
T ss_pred CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC----------------eeeecCCeEEEeccChhhc--ccC
Confidence 6899999999999999999998 99999999876 7889999999999999974 689
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH-CCCeEecCCCcc
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEPETMA 165 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~-~g~~~~~~~~~~ 165 (219)
|+|+||||........++.+++||+++++++++|+++|+|+++||++|+|+|+++|+||...+.+++ ++...+..+.
T Consensus 63 D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~-- 140 (166)
T PF13278_consen 63 DILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQ-- 140 (166)
T ss_dssp SEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSS--
T ss_pred CEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCC--
Confidence 9999999988434567899999999999999999999999999999999999999999999999998 4666554222
Q ss_pred eEEEcCCeEeCCCCCCHHHHHHHHHH
Q 027785 166 ACVVDGNIITGATYEGHPEFIRLFLK 191 (219)
Q Consensus 166 ~~v~dg~liT~~g~~s~~~~~l~li~ 191 (219)
.+|.|||++||+|..+++|+++++||
T Consensus 141 ~~v~dg~i~Ta~g~~~~~dl~l~li~ 166 (166)
T PF13278_consen 141 LFVDDGNIITAGGPTAAIDLALYLIE 166 (166)
T ss_dssp SEEEETTEEEESSCCHHHHHHHHHHH
T ss_pred EEEECCCeEEecHHHHHHHHHHHHhC
Confidence 49999999999999999999999996
No 11
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=2e-33 Score=219.20 Aligned_cols=169 Identities=22% Similarity=0.235 Sum_probs=147.7
Q ss_pred EEEEecCCCCchhhHHHHHHHHhC------------CCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCc
Q 027785 11 VLLLCGDYMEDYEAMVPFQALLAF------------GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATF 78 (219)
Q Consensus 11 v~il~~~g~~~~e~~~~~~~l~~a------------g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~ 78 (219)
|+|+++|||...++..++|+|+.+ +|+++++|.+++ ++.++.|..+.+|..+
T Consensus 1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~----------------~v~s~~g~~i~~d~~~ 64 (195)
T cd03138 1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG----------------PVLLAGGILILPDATL 64 (195)
T ss_pred CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC----------------eeecCCCceecccccc
Confidence 689999999999999999999964 488999998876 6778889999999988
Q ss_pred cCCCCCCccEEEEcCCCCc-c--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH-C
Q 027785 79 DEIDPTKYDGLVIPGGRAP-E--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-A 154 (219)
Q Consensus 79 ~~~~~~~~D~liipGG~~~-~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~-~ 154 (219)
++. .+||+|+||||.+. . .+..++.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++ +
T Consensus 65 ~~~--~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~t~~~~~~~~~~~~~ 142 (195)
T cd03138 65 ADV--PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRF 142 (195)
T ss_pred ccc--CCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHccCcCCCeeeehHhhHHHHHHHC
Confidence 764 58999999998754 2 4567899999999999999999999999999999999999999999999999987 5
Q ss_pred CCe-EecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc
Q 027785 155 GAS-WIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS 200 (219)
Q Consensus 155 g~~-~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~ 200 (219)
+.. +.+.. .++.||++|||+|+.++.++++++|+++.|+..++
T Consensus 143 p~~~~~~~~---~~v~dg~~~T~~g~~~~~d~al~li~~~~G~~~a~ 186 (195)
T cd03138 143 PKVRLDPDR---VVVTDGNLITAGGAMAWADLALHLIERLAGPELAQ 186 (195)
T ss_pred CCceeccCc---EEEeCCCEEEcccHHHHHHHHHHHHHHHhCHHHHH
Confidence 544 44434 48999999999999999999999999888885533
No 12
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=8.2e-33 Score=211.33 Aligned_cols=163 Identities=27% Similarity=0.427 Sum_probs=140.3
Q ss_pred EEEEecCCCCchhhHHHHHHHHhC-CCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785 11 VLLLCGDYMEDYEAMVPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL 89 (219)
Q Consensus 11 v~il~~~g~~~~e~~~~~~~l~~a-g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 89 (219)
|+|+++|+|++.|+..++++|+++ ++++.+++++++ ++.++.|..+.++.++++.+..+||+|
T Consensus 1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~----------------~v~ss~g~~i~~~~~~~~~~~~~~D~l 64 (170)
T cd03140 1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE----------------PVTSIGGLRVVPDYSLDDLPPEDYDLL 64 (170)
T ss_pred CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC----------------eeEecCCeEEccccchhHCCHhHccEE
Confidence 589999999999999999999997 799999999876 678899999999999988765689999
Q ss_pred EEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCC-CHHHHHHC--CCeEecCCCcce
Q 027785 90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPP-VKPVLIAA--GASWIEPETMAA 166 (219)
Q Consensus 90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~-~~~~l~~~--g~~~~~~~~~~~ 166 (219)
+||||..... ..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||. ..+.++++ +....... .
T Consensus 65 ~I~Gg~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~---~ 140 (170)
T cd03140 65 ILPGGDSWDN-PEAPDLAGLVRQALKQGKPVAAICGATLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEP---Q 140 (170)
T ss_pred EEcCCccccc-CCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccC---c
Confidence 9999976443 3678999999999999999999999999999999999999999985 45555542 44443333 3
Q ss_pred EEEcCCeEeCCCCCCHHHHHHHHHHHHc
Q 027785 167 CVVDGNIITGATYEGHPEFIRLFLKALG 194 (219)
Q Consensus 167 ~v~dg~liT~~g~~s~~~~~l~li~~l~ 194 (219)
+++|||+|||+|. ++.||++++++++.
T Consensus 141 ~v~dg~iiT~~g~-a~~d~al~~i~~l~ 167 (170)
T cd03140 141 AVSDGNLITANGT-APVEFAAEILRALD 167 (170)
T ss_pred EEEcCCEEECCCc-CHHHHHHHHHHHcC
Confidence 8999999999875 58999999999875
No 13
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=100.00 E-value=2e-32 Score=213.82 Aligned_cols=186 Identities=22% Similarity=0.359 Sum_probs=150.8
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
+|||+|+++|||++.|+..|+++|+++|+++.+++..++. ..++.++.|..+.+|..+++++..+||
T Consensus 2 ~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~-------------~~~v~ss~G~~v~~d~~l~~~~~~~~D 68 (196)
T PRK11574 2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDG-------------NLEITCSRGVKLLADAPLVEVADGDFD 68 (196)
T ss_pred CceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCC-------------CceEEcCCCCEEeCCCCHHHCCCCCCC
Confidence 5799999999999999999999999999999999976421 115778889999999999887667899
Q ss_pred EEEEcCCCC-cccccCChHHHHHHHHHHhcCCeEEEEehhHHH-HHhCcccCCceEeeCCCCHHHHHHCC-CeEecCCCc
Q 027785 88 GLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI-LAAADVVKGRKCTAYPPVKPVLIAAG-ASWIEPETM 164 (219)
Q Consensus 88 ~liipGG~~-~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~-La~aGlL~g~~~t~~~~~~~~l~~~g-~~~~~~~~~ 164 (219)
+|+||||.+ ...+..++.+.+||+++++++++|++||+|+++ |+.+|+|+|+++|.++...+. ++ ..+.+..
T Consensus 69 ~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~---~p~~~~~~~~-- 143 (196)
T PRK11574 69 VIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDK---IPAEQWQDKR-- 143 (196)
T ss_pred EEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHh---cccCcccCCC--
Confidence 999999974 444567788999999999999999999999984 677999999999988776543 34 3444433
Q ss_pred ceEEEcC--CeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEecCCchh
Q 027785 165 AACVVDG--NIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLCGVSFC 213 (219)
Q Consensus 165 ~~~v~dg--~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~~~~~~ 213 (219)
++.|+ |+|||+|++++.||++++|+++.|+..++ ++.+++...+.-+
T Consensus 144 --~v~d~~~~iiT~~G~~a~~dlal~li~~~~G~~~a~~va~~~~~~~~~~~~ 194 (196)
T PRK11574 144 --VVWDARVNLLTSQGPGTAIDFALKIIDLLVGREKAHEVASQLVMAAGIYNY 194 (196)
T ss_pred --EEEeCCccEEeCCCcchHHHHHHHHHHHhcCHHHHHHHHhhhccCcccccc
Confidence 66665 99999999999999999999988886544 5555544444433
No 14
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=100.00 E-value=2.5e-32 Score=224.28 Aligned_cols=178 Identities=16% Similarity=0.203 Sum_probs=154.4
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCC-------CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDE 80 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 80 (219)
+.+|+|+++|+|....+..+.+.|+.+| |.+.+++.+++ ++.+++|+.|.+|..+++
T Consensus 10 ~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~----------------~V~ss~G~~i~~d~~~~~ 73 (328)
T COG4977 10 PQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG----------------PVRSSSGLSIAPDGGLEA 73 (328)
T ss_pred ceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC----------------CcccCCCceEecCCcccc
Confidence 5689999999999999999999999886 45677887775 688999999999999997
Q ss_pred CCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH-CCCeEe
Q 027785 81 IDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWI 159 (219)
Q Consensus 81 ~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~-~g~~~~ 159 (219)
.. ++|+++++||.++......+.+..||++.+++|..|+++|+|+++||++|||+||++|+||...+.|++ +|.+..
T Consensus 74 ~~--~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~ 151 (328)
T COG4977 74 AP--PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRV 151 (328)
T ss_pred cC--cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHhcccCCCCeeeccccHHHHHHhCCCCCC
Confidence 64 599999999988765444588999999999999999999999999999999999999999999999987 787774
Q ss_pred cCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcccc-ccc-cceEEE
Q 027785 160 EPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI-TGS-DKRILF 206 (219)
Q Consensus 160 ~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~-~~~-~~~~~~ 206 (219)
... .|++||++|||+|.++++|++++||++..|.. +.+ ++..++
T Consensus 152 ~~~---lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~ 197 (328)
T COG4977 152 TDR---LFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQLVV 197 (328)
T ss_pred CCc---eEEecCCEEEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhh
Confidence 444 59999999999999999999999998777664 444 444444
No 15
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=100.00 E-value=7.5e-32 Score=206.55 Aligned_cols=174 Identities=39% Similarity=0.627 Sum_probs=156.7
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
++++.|+..++.++.|+..+.++|++.|.+|.+++++++. ++.++.+..+.+|..+.+.-..+||
T Consensus 5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~---------------~vkcs~~v~~~~d~~l~D~~~~~yD 69 (247)
T KOG2764|consen 5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKE---------------GVKCSRGVHILPDNALFDVVDSKYD 69 (247)
T ss_pred cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCc---------------ccccccceEecccccchhhcccccc
Confidence 5689999999999999999999999999999999998764 5666777778888777665558999
Q ss_pred EEEEcCC-CCcccccCChHHHHHHHHHHhcCCeEEEEehhH-HHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcc
Q 027785 88 GLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA 165 (219)
Q Consensus 88 ~liipGG-~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~-~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~ 165 (219)
+++|||| .|+..+...+.+.+.+++|.+.+++|++||+|+ .+|+.-|++.|+++|+||...+.+.+-|..|+++.
T Consensus 70 viilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~--- 146 (247)
T KOG2764|consen 70 VIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPR--- 146 (247)
T ss_pred EEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCC---
Confidence 9999999 788889999999999999999999999999999 56666778889999999999999998888898886
Q ss_pred eEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc
Q 027785 166 ACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS 200 (219)
Q Consensus 166 ~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~ 200 (219)
+|.|||++|++|+..+.+|++.|+|.|.|+....
T Consensus 147 -vv~dG~liTSrGpgT~~eFal~lvEqL~GKeka~ 180 (247)
T KOG2764|consen 147 -VVKDGNLITSRGPGTAFEFALKLVEQLGGKEKAN 180 (247)
T ss_pred -eEEeCcEEeccCCCchHHHHHHHHHHhcCchhhh
Confidence 8999999999999999999999999999997753
No 16
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=99.97 E-value=4.5e-31 Score=209.94 Aligned_cols=177 Identities=23% Similarity=0.316 Sum_probs=140.2
Q ss_pred CCCCchhhHHHHHHHHhCCCeEEEecCCCCC-CCCCCcccccCCCc-cee----ccccCCccccccCccCCCCCCccEEE
Q 027785 17 DYMEDYEAMVPFQALLAFGVSVDAACPGKKS-GDVCPTAVHQSTGH-QTY----SETRGHNFALNATFDEIDPTKYDGLV 90 (219)
Q Consensus 17 ~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~-~~~~~~~~~~~~~~-~~~----~~~~g~~i~~~~~~~~~~~~~~D~li 90 (219)
.|++..|+..|+++|+++|++|+++|++++. .++........... ..+ ..+.+..+.++..+++++..+||+|+
T Consensus 20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~ 99 (231)
T cd03147 20 TGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF 99 (231)
T ss_pred cccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence 4889999999999999999999999997642 12211110000000 011 12345577888899999989999999
Q ss_pred EcCCCCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC-------cccCCceEeeCCCC---------------
Q 027785 91 IPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRKCTAYPPV--------------- 147 (219)
Q Consensus 91 ipGG~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a-------GlL~g~~~t~~~~~--------------- 147 (219)
||||.++ ..+..++.++++|+++++++|+|++||+|+.+|+.+ ++++||++|+|+..
T Consensus 100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~ 179 (231)
T cd03147 100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRN 179 (231)
T ss_pred ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccC
Confidence 9999875 458889999999999999999999999999999987 99999999999864
Q ss_pred ----HHHHHHCCCeEecCC--CcceEEEcCCeEeCCCCCCHHHHHHHHHHHH
Q 027785 148 ----KPVLIAAGASWIEPE--TMAACVVDGNIITGATYEGHPEFIRLFLKAL 193 (219)
Q Consensus 148 ----~~~l~~~g~~~~~~~--~~~~~v~dg~liT~~g~~s~~~~~l~li~~l 193 (219)
++.+++.|+.|.+.. .+..+|+|||+||++++.++.++++.|++.|
T Consensus 180 ~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l 231 (231)
T cd03147 180 LESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL 231 (231)
T ss_pred CccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence 445566789988642 1235889999999999999999999999875
No 17
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=99.97 E-value=4.8e-31 Score=209.26 Aligned_cols=177 Identities=28% Similarity=0.465 Sum_probs=141.1
Q ss_pred CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCC--ccee--ccccCCccccccCccCCCCCCccEEEEc
Q 027785 17 DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG--HQTY--SETRGHNFALNATFDEIDPTKYDGLVIP 92 (219)
Q Consensus 17 ~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~--~~~~--~~~~g~~i~~~~~~~~~~~~~~D~liip 92 (219)
+|+++.|+..|+++|.++|++|+++++.+++......++..... +... ....+..+.++..++++++.+||+|+||
T Consensus 18 ~G~~~~E~~~p~~~l~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ip 97 (221)
T cd03141 18 TGLWLEELAHPYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFIP 97 (221)
T ss_pred CccCHHHHHHHHHHHHHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEEC
Confidence 79999999999999999999999999987642111111110000 0000 1234567889999999988899999999
Q ss_pred CCCCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc------ccCCceEeeCCCCH---------------HH
Q 027785 93 GGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYPPVK---------------PV 150 (219)
Q Consensus 93 GG~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG------lL~g~~~t~~~~~~---------------~~ 150 (219)
||.++ ..+..++.+++||+++++++++|++||+|+++|+++| +|+||++|+||... +.
T Consensus 98 GG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~~ 177 (221)
T cd03141 98 GGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDE 177 (221)
T ss_pred CCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHHH
Confidence 99875 3467899999999999999999999999999999999 79999999998754 44
Q ss_pred HHHCCCeEecCC-CcceEEEcCCeEeCCCCCCHHHHHHHHHHHH
Q 027785 151 LIAAGASWIEPE-TMAACVVDGNIITGATYEGHPEFIRLFLKAL 193 (219)
Q Consensus 151 l~~~g~~~~~~~-~~~~~v~dg~liT~~g~~s~~~~~l~li~~l 193 (219)
+++.|++|.+.. .+..+|+|+|+||++|+.++.+|++++|+.|
T Consensus 178 l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l 221 (221)
T cd03141 178 LKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221 (221)
T ss_pred HHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence 677788888643 1235899999999999999999999999864
No 18
>PRK04155 chaperone protein HchA; Provisional
Probab=99.97 E-value=1.1e-30 Score=213.03 Aligned_cols=190 Identities=18% Similarity=0.274 Sum_probs=146.6
Q ss_pred CCCEEEEEec--------------CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCc-ceeccccCCc
Q 027785 7 GKRSVLLLCG--------------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH-QTYSETRGHN 71 (219)
Q Consensus 7 ~~~kv~il~~--------------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~ 71 (219)
.+|||+|++. .|+++.|+..|+++|+++|++|+++|+.+++.....++....+.. .......+..
T Consensus 48 ~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~~d~~v~~~~~~~~~~ 127 (287)
T PRK04155 48 GGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGNPVKFEYWAMPHEDEAVMGFYEKYKSK 127 (287)
T ss_pred CCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccccchhHHHHHHHhhhh
Confidence 3679999985 488999999999999999999999999876432222222211100 0000122333
Q ss_pred cccccCccCC----C--CCCccEEEEcCCCCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc------ccCC
Q 027785 72 FALNATFDEI----D--PTKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKG 138 (219)
Q Consensus 72 i~~~~~~~~~----~--~~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG------lL~g 138 (219)
+..+..++++ . +.+||+||||||+++ ..++.++.+.++|+++++++|+|++||||+++|..+| +++|
T Consensus 128 l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~~~~g~~ll~G 207 (287)
T PRK04155 128 FKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAGVDHGDNPLNG 207 (287)
T ss_pred ccCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCcCCCcccCC
Confidence 4444444333 2 579999999999875 5588999999999999999999999999999999999 9999
Q ss_pred ceEeeCCCC-------------------HHHHHHCCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccc
Q 027785 139 RKCTAYPPV-------------------KPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT 196 (219)
Q Consensus 139 ~~~t~~~~~-------------------~~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~ 196 (219)
|++|+|+.. ++.|++.|+.+++.+.+..+|+|||+||++|+.++.+|++.+++.|..+
T Consensus 208 kkvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~~ 284 (287)
T PRK04155 208 YSICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELLAA 284 (287)
T ss_pred CEEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHHH
Confidence 999998865 5567778999998643345999999999999999999999999987654
No 19
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=197.09 Aligned_cols=176 Identities=40% Similarity=0.707 Sum_probs=152.5
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceecccc-CCccccccCccCCCCCCc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR-GHNFALNATFDEIDPTKY 86 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~ 86 (219)
++||+|++++||+..|+..|+++|+++|+.++++++.++. ..+.++. +..+.++..++++++.+|
T Consensus 2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~--------------~~~~~~~g~~~~~~~~~~~~~~~~~y 67 (188)
T COG0693 2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKG--------------KSVTSKRGGLVVADDKAFDDADAADY 67 (188)
T ss_pred CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCc--------------ceeecccCcceEecccccccCCHhHC
Confidence 4689999999999999999999999999999999998640 0233333 456667778888877899
Q ss_pred cEEEEcCC-CCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc-ccCCceEeeCCCCHHHHHH----CCCeEec
Q 027785 87 DGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-VVKGRKCTAYPPVKPVLIA----AGASWIE 160 (219)
Q Consensus 87 D~liipGG-~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG-lL~g~~~t~~~~~~~~l~~----~g~~~~~ 160 (219)
|+|+|||| .+++....++.+++|++++++++|+|++||+|+++|+.+| +++||++|+++...+.... .|++|++
T Consensus 68 dal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd 147 (188)
T COG0693 68 DALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVD 147 (188)
T ss_pred CEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccccccCCceEeecCchHHHHHhHHHhcCceEec
Confidence 99999999 7887777779999999999999999999999999999999 9999999999999888877 6899998
Q ss_pred CCC-cceEEEcCC-eEeCCCCCCHHHHHHHHHHHHcccc
Q 027785 161 PET-MAACVVDGN-IITGATYEGHPEFIRLFLKALGGTI 197 (219)
Q Consensus 161 ~~~-~~~~v~dg~-liT~~g~~s~~~~~l~li~~l~~~~ 197 (219)
... ...++.||+ ++|+.++.++.+++..+++.+.+..
T Consensus 148 ~~~~~~~vv~dg~~lvt~~~p~~~~~~~~~~~~~l~~~~ 186 (188)
T COG0693 148 APLWTDEVVVDGNALVTGRNPASAPAFALELLKALGGAE 186 (188)
T ss_pred cccCcCCEEEECCeEEEcCCcccHHHHHHHHHHHHhccc
Confidence 831 012899999 9999999999999999999988764
No 20
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=99.97 E-value=9.2e-30 Score=202.54 Aligned_cols=179 Identities=17% Similarity=0.242 Sum_probs=140.6
Q ss_pred ecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCc-ceeccccCCccccccCccCC------CCCCcc
Q 027785 15 CGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH-QTYSETRGHNFALNATFDEI------DPTKYD 87 (219)
Q Consensus 15 ~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~i~~~~~~~~~------~~~~~D 87 (219)
+..||++.|+..|+++|+++|++++++|+.+++.....++....+.. .......+..+..+..++++ ++.+||
T Consensus 19 ~~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYD 98 (232)
T cd03148 19 FSTGNHPVEMLLPLYHLHAAGFDFDVATLSGLPVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEYA 98 (232)
T ss_pred cCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCcCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhce
Confidence 35899999999999999999999999999775321111221110000 00001234556777778776 457999
Q ss_pred EEEEcCCCCcc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcc------cCCceEeeCCCCHH-----------
Q 027785 88 GLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV------VKGRKCTAYPPVKP----------- 149 (219)
Q Consensus 88 ~liipGG~~~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGl------L~g~~~t~~~~~~~----------- 149 (219)
+||+|||+++. .++.++.+.++++++++++|+|++||||+++|..+++ ++||++|+|+..++
T Consensus 99 av~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~~ 178 (232)
T cd03148 99 AVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYMP 178 (232)
T ss_pred EEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhccCCCCCeeeCCcEEecCCCHHHHhhhhcccccc
Confidence 99999998764 5899999999999999999999999999999999998 99999999876543
Q ss_pred ---------HHHHCCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHH
Q 027785 150 ---------VLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL 193 (219)
Q Consensus 150 ---------~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l 193 (219)
.|++.|++|...+....+|+||++||++++.|+..++.++++.|
T Consensus 179 ~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~ 231 (232)
T cd03148 179 GHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEM 231 (232)
T ss_pred CcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence 45567889888743345999999999999999999999999865
No 21
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=99.96 E-value=1.2e-28 Score=184.06 Aligned_cols=141 Identities=39% Similarity=0.721 Sum_probs=122.6
Q ss_pred eEEEecCCCCCCCCCCcccccCCCcceeccccC---CccccccCccCCCCCCccEEEEcCCCC-cccccCC-hHHHHHHH
Q 027785 37 SVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG---HNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMN-DSVIDLVR 111 (219)
Q Consensus 37 ~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~~~~~~~~D~liipGG~~-~~~~~~~-~~l~~~l~ 111 (219)
+|+++++..+. .+.++.| ..+.++..++++++.+||+||||||.+ +..++.+ +.+.++|+
T Consensus 1 ~V~~vs~~~~~---------------~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~ 65 (147)
T PF01965_consen 1 KVDVVSPGDGK---------------EVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLK 65 (147)
T ss_dssp EEEEEESSSSS---------------EEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHH
T ss_pred CEEEEECCCCC---------------eEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHH
Confidence 46677776542 6777888 999999999999999999999999987 5667745 99999999
Q ss_pred HHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEEcC-CeEeCCCCCCHHHHHHHHH
Q 027785 112 KFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG-NIITGATYEGHPEFIRLFL 190 (219)
Q Consensus 112 ~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~dg-~liT~~g~~s~~~~~l~li 190 (219)
++++++|+|++||+|+.+|+.+|+|+|+++|+|+...+.++..|+.|++... .+++|+ |+||++|+.++.+|+++++
T Consensus 66 ~~~~~~k~iaaIC~g~~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~--~~vvD~~nlIT~~~~~~~~~fa~~iv 143 (147)
T PF01965_consen 66 EFYEAGKPIAAICHGPAVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDD--PVVVDGGNLITGRGPGSAIEFALAIV 143 (147)
T ss_dssp HHHHTT-EEEEETTCHHHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSS--SEEEETTTEEEESSGGGHHHHHHHHH
T ss_pred HHHHcCCeEEecCCCcchhhccCccCCceeecCccHHHHHHHCCCEEEecCC--CeEEECCeEEECCChhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999988889999998432 388999 9999999999999999999
Q ss_pred HHHc
Q 027785 191 KALG 194 (219)
Q Consensus 191 ~~l~ 194 (219)
+.|+
T Consensus 144 e~L~ 147 (147)
T PF01965_consen 144 EALG 147 (147)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9874
No 22
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.95 E-value=3.2e-27 Score=185.89 Aligned_cols=165 Identities=25% Similarity=0.326 Sum_probs=127.6
Q ss_pred CEEEEEec-----CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccc-------c
Q 027785 9 RSVLLLCG-----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------A 76 (219)
Q Consensus 9 ~kv~il~~-----~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-------~ 76 (219)
+||+|++. +|+++.|+..|+++|+++|++++++|++++..... .+..+. .+....+..+..+ .
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 76 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVI----NHLTGE-EMGETRNVLVESARIARGEIK 76 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccc----cCcccc-ccccccceeeehhhhhccCCC
Confidence 58999998 99999999999999999999999999977531110 000000 1222223323222 5
Q ss_pred CccCCCCCCccEEEEcCCCCc-----------ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeC-
Q 027785 77 TFDEIDPTKYDGLVIPGGRAP-----------EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY- 144 (219)
Q Consensus 77 ~~~~~~~~~~D~liipGG~~~-----------~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~- 144 (219)
.++++++.+||+||||||.++ +.++.++.+++++++|++++|+|++||+|+++|+.+.. +||++|++
T Consensus 77 ~l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~-~gr~~T~~~ 155 (217)
T PRK11780 77 DLAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG-AGVKLTIGN 155 (217)
T ss_pred chhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc-cCcEEEecC
Confidence 788888889999999999874 22355899999999999999999999999999998632 89999999
Q ss_pred -CCCHHHHHHCCCeEecCCCcceEEEc--CCeEeCCCCC
Q 027785 145 -PPVKPVLIAAGASWIEPETMAACVVD--GNIITGATYE 180 (219)
Q Consensus 145 -~~~~~~l~~~g~~~~~~~~~~~~v~d--g~liT~~g~~ 180 (219)
+.....+++.|++|++.+.. .+|+| +|+||+....
T Consensus 156 ~~~~~~~~~~aGa~~vd~~~~-~vvvD~~~~lvt~~~~~ 193 (217)
T PRK11780 156 DEDTAAAIEKMGGEHVDCPVD-DIVVDEENKVVTTPAYM 193 (217)
T ss_pred ChhhHHHHHHCCCEEEcCCCC-eEEEECCCCEEeCCccc
Confidence 88999999999999987432 25666 7899998743
No 23
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.94 E-value=3.7e-26 Score=178.83 Aligned_cols=172 Identities=25% Similarity=0.330 Sum_probs=128.6
Q ss_pred EEEEe-----cCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccc-------cCc
Q 027785 11 VLLLC-----GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------ATF 78 (219)
Q Consensus 11 v~il~-----~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-------~~~ 78 (219)
++|++ ++||++.|+..|+++|+++|++++++|++++..... .+..+. .+..+.+..+.++ .++
T Consensus 1 ~~~~~~~cg~~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 75 (213)
T cd03133 1 VAVVLSGCGVYDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVV----NHLTGE-AEGESRNVLVESARIARGNIKDL 75 (213)
T ss_pred CEEEEeCCcCCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCcc----cccccc-ccccccceeeehhhhhhcCCCch
Confidence 35666 589999999999999999999999999976532110 000010 2222334444433 678
Q ss_pred cCCCCCCccEEEEcCCCCc-ccc----------cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCC--
Q 027785 79 DEIDPTKYDGLVIPGGRAP-EYL----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYP-- 145 (219)
Q Consensus 79 ~~~~~~~~D~liipGG~~~-~~~----------~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~-- 145 (219)
+++++.+||+|+||||.++ ..+ +.++.++++++++++++|+|++||+|+++|+.++. +||++|+|+
T Consensus 76 ~ev~~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~-kGr~vT~~~~~ 154 (213)
T cd03133 76 AKLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG-EGVEVTIGNDA 154 (213)
T ss_pred HHCCHhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc-cCCeEEccCCH
Confidence 8888889999999999864 222 24789999999999999999999999999999766 999999999
Q ss_pred CCHHHHHHCCCeEecCCCcceEEEc--CCeEeCCCC---CCHHHHHHHH
Q 027785 146 PVKPVLIAAGASWIEPETMAACVVD--GNIITGATY---EGHPEFIRLF 189 (219)
Q Consensus 146 ~~~~~l~~~g~~~~~~~~~~~~v~d--g~liT~~g~---~s~~~~~l~l 189 (219)
..++.+++.|+.|++.+.+ .+++| ||+|||... .+..+.++.|
T Consensus 155 ~~~~~l~~aGa~~~d~~~~-~vvvd~dg~lITs~~~~~~~~~~~~~~~~ 202 (213)
T cd03133 155 GTAAAIEKMGAEHVNCPVE-EIVVDEKNKVVTTPAYMLADSIHEIADGI 202 (213)
T ss_pred HHHHHHHHCCCEEEeCCCC-eEEEECCCCEEeCccccCCCCHHHHHHhH
Confidence 8889999999999976322 24444 899999875 3445555543
No 24
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=99.91 E-value=2.2e-23 Score=154.66 Aligned_cols=113 Identities=25% Similarity=0.370 Sum_probs=102.9
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
++||+|++++||+..|+..+.++|+.+|++++++|++++ ++.++.|..+.++.++++.+..+||
T Consensus 1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~----------------~v~s~~g~~i~~~~~l~~~~~~~~D 64 (142)
T cd03132 1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG----------------GVVDSDGKTLEVDQTYAGAPSVLFD 64 (142)
T ss_pred CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC----------------ceecCCCcEEecceeecCCChhhcC
Confidence 368999999999999999999999999999999999886 5778889999999999987767899
Q ss_pred EEEEcCCCCcc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCccc
Q 027785 88 GLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV 136 (219)
Q Consensus 88 ~liipGG~~~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL 136 (219)
+|+||||.+.. .+..++.+.+||+++++++++|+++|+|+++|+++|+|
T Consensus 65 ~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~aGll 114 (142)
T cd03132 65 AVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAAGIP 114 (142)
T ss_pred EEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHHcCCC
Confidence 99999997643 34678999999999999999999999999999999996
No 25
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.75 E-value=9.5e-18 Score=150.94 Aligned_cols=114 Identities=23% Similarity=0.276 Sum_probs=105.6
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
++||+||+++|++..|+..+.++|..+|..+.+++++++ .+.++.|..+.+|.++.+.++..||
T Consensus 597 gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G----------------~V~~s~G~~I~aD~t~~~~~Sv~FD 660 (752)
T PRK11249 597 GRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMG----------------EVTADDGTVLPIAATFAGAPSLTFD 660 (752)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCC----------------eEECCCCCEEecceeeccCCccCCC
Confidence 789999999999999999999999999999999999876 6788889999999999998777899
Q ss_pred EEEEcCCC-CcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccC
Q 027785 88 GLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVK 137 (219)
Q Consensus 88 ~liipGG~-~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~ 137 (219)
+|+||||. ++..+..++.+++||+++++++|+|+++|+|+.+|+++||.+
T Consensus 661 AVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaAGL~~ 711 (752)
T PRK11249 661 AVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAALKLPD 711 (752)
T ss_pred EEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhcCCCC
Confidence 99999996 556677899999999999999999999999999999999954
No 26
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.46 E-value=1.2e-12 Score=95.75 Aligned_cols=174 Identities=18% Similarity=0.208 Sum_probs=122.4
Q ss_pred CEEEEEe-----cCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCC------cceeccccCCccccccC
Q 027785 9 RSVLLLC-----GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG------HQTYSETRGHNFALNAT 77 (219)
Q Consensus 9 ~kv~il~-----~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~------~~~~~~~~g~~i~~~~~ 77 (219)
|||++++ |||.+..|-...+..+.+.|.++..+.|+..+.+. +++.+| ++....+..+.----..
T Consensus 2 Kkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~Q~hV----iNHlTGE~m~EtRNVLvEsARIaRG~i~~ 77 (217)
T COG3155 2 KKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQQVHV----INHLTGEAMPETRNVLVESARIARGEIRP 77 (217)
T ss_pred ceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCchhhhh----hhhccccccchhhhHHHHHHHHhhccccc
Confidence 6999998 68999999999999999999999999998764332 222222 22222232222222234
Q ss_pred ccCCCCCCccEEEEcCCCCc-ccc----------cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEee--C
Q 027785 78 FDEIDPTKYDGLVIPGGRAP-EYL----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTA--Y 144 (219)
Q Consensus 78 ~~~~~~~~~D~liipGG~~~-~~~----------~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~--~ 144 (219)
+...++.+||++++|||+|+ .++ .-++.+....+.+++.|||++.+|.++.+|..-- =.+.+.|. .
T Consensus 78 l~~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~-g~~~~~TIGnD 156 (217)
T COG3155 78 LAQADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIF-GFPLRLTIGND 156 (217)
T ss_pred hhhcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHc-CCceeEEecCC
Confidence 66677889999999999985 222 3468999999999999999999999999988531 12334454 4
Q ss_pred CCCHHHHHHCCCeEecCCCcceEEE-cCCeEeCCCCCCHHHHHHHHHH
Q 027785 145 PPVKPVLIAAGASWIEPETMAACVV-DGNIITGATYEGHPEFIRLFLK 191 (219)
Q Consensus 145 ~~~~~~l~~~g~~~~~~~~~~~~v~-dg~liT~~g~~s~~~~~l~li~ 191 (219)
+...+.++++|+..++.+.+..++. +.+++|.. +.-++..|-+
T Consensus 157 ~dTa~a~~~mG~eHv~cPvd~iV~D~~~KvvtTP----AYMLA~~Iae 200 (217)
T COG3155 157 IDTAEALEEMGAEHVPCPVDDIVVDEDNKVVTTP----AYMLAQNIAE 200 (217)
T ss_pred ccHHHHHHHhCcccCCCCccceeecCCCceecCh----HHHHHHHHHH
Confidence 4567888899999998887655543 56888853 3444544444
No 27
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.44 E-value=9.9e-13 Score=105.52 Aligned_cols=129 Identities=20% Similarity=0.266 Sum_probs=88.4
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV 90 (219)
Q Consensus 11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li 90 (219)
|+|+.++|.+ .-....++|+++|+++.+++.... +. ...+..+||.|+
T Consensus 1 v~vl~~pG~n--~~~~~~~al~~aG~~v~~v~~~~~-------------------------~~-----~~~~l~~~d~li 48 (238)
T cd01740 1 VAVLRFPGSN--CDRDMAYAFELAGFEAEDVWHNDL-------------------------LA-----GRKDLDDYDGVV 48 (238)
T ss_pred CEEEEcCCcC--CHHHHHHHHHHcCCCEEEEeccCC-------------------------cc-----ccCCHhhCCEEE
Confidence 5899999987 334678899999999998865421 00 011235799999
Q ss_pred EcCCCCc-cccc-----CChH-HHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCC
Q 027785 91 IPGGRAP-EYLA-----MNDS-VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPET 163 (219)
Q Consensus 91 ipGG~~~-~~~~-----~~~~-l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~ 163 (219)
||||... ..+. .... +.++|+++.+++++|++||.|.++|+++|+|.|+. +.++..+...+..+ .+++.
T Consensus 49 ipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~-~~~~~~~~~~~~~~-~~v~~-- 124 (238)
T cd01740 49 LPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGAL-IRNKGLKFICRWQN-RFVTL-- 124 (238)
T ss_pred ECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCcccc-ccCCCCceeccccC-ceEEE--
Confidence 9999642 2221 1223 89999999999999999999999999999999966 66655432221111 22322
Q ss_pred cceEEEcCCeEeCC
Q 027785 164 MAACVVDGNIITGA 177 (219)
Q Consensus 164 ~~~~v~dg~liT~~ 177 (219)
.++.+++++|+.
T Consensus 125 --~v~~~~si~t~~ 136 (238)
T cd01740 125 --RVENNDSPFTKG 136 (238)
T ss_pred --EEcCCCCceecC
Confidence 245667777765
No 28
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.44 E-value=1.3e-12 Score=103.49 Aligned_cols=93 Identities=25% Similarity=0.389 Sum_probs=73.3
Q ss_pred EEEEEecCCCC-chhhHHHHHHHH-hCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 10 SVLLLCGDYME-DYEAMVPFQALL-AFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 10 kv~il~~~g~~-~~e~~~~~~~l~-~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
||+|+.++|.+ +.|+ ..+|+ .+|+++..++.... +..+||
T Consensus 2 ~v~Vl~~~G~n~~~d~---~~a~~~~~G~~~~~v~~~~~-----------------------------------~l~~~D 43 (219)
T PRK03619 2 KVAVIVFPGSNCDRDM---ARALRDLLGAEPEYVWHKET-----------------------------------DLDGVD 43 (219)
T ss_pred EEEEEecCCcChHHHH---HHHHHhcCCCeEEEEecCcC-----------------------------------CCCCCC
Confidence 89999999988 3333 77787 78988877754210 124799
Q ss_pred EEEEcCCCCcc------cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCce
Q 027785 88 GLVIPGGRAPE------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRK 140 (219)
Q Consensus 88 ~liipGG~~~~------~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~ 140 (219)
+|+||||.... .....+.+.+||++++++++++++||+|.++|+++|||+|+-
T Consensus 44 ~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l 102 (219)
T PRK03619 44 AVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGAL 102 (219)
T ss_pred EEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeE
Confidence 99999996421 123457899999999999999999999999999999999953
No 29
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.41 E-value=2.2e-12 Score=104.32 Aligned_cols=99 Identities=22% Similarity=0.318 Sum_probs=73.7
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
++||+|++++|++.. ..+.++|+.+|+++.+++.... .+ . ..+..+||
T Consensus 3 ~~kvaVl~~pG~n~d--~e~~~Al~~aG~~v~~v~~~~~---------------------------~~--~-~~~l~~~D 50 (261)
T PRK01175 3 SIRVAVLRMEGTNCE--DETVKAFRRLGVEPEYVHINDL---------------------------AA--E-RKSVSDYD 50 (261)
T ss_pred CCEEEEEeCCCCCCH--HHHHHHHHHCCCcEEEEeeccc---------------------------cc--c-ccchhhCC
Confidence 458999999999833 3557999999999988865321 00 0 01235799
Q ss_pred EEEEcCCCCc-ccccCC--------hHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCC
Q 027785 88 GLVIPGGRAP-EYLAMN--------DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 138 (219)
Q Consensus 88 ~liipGG~~~-~~~~~~--------~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g 138 (219)
+|+||||.+. ..+... +.+.+.|+++.+++++|.+||.|.++|+++|+|.|
T Consensus 51 gLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg 110 (261)
T PRK01175 51 CLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPG 110 (261)
T ss_pred EEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCC
Confidence 9999999642 222211 23458899999999999999999999999999998
No 30
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.32 E-value=8.6e-12 Score=96.71 Aligned_cols=93 Identities=27% Similarity=0.374 Sum_probs=74.9
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCC-Ccc
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT-KYD 87 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-~~D 87 (219)
+||+|+.++|.+ .-...+.+|+.+|+++..+..+. .... +||
T Consensus 3 ~kvaVi~fpGtN--~d~d~~~A~~~aG~~~~~V~~~d-----------------------------------~~~~~~~d 45 (231)
T COG0047 3 PKVAVLRFPGTN--CDYDMAAAFERAGFEAEDVWHSD-----------------------------------LLLGRDFD 45 (231)
T ss_pred ceEEEEEcCCcC--chHHHHHHHHHcCCCceEEEeee-----------------------------------cccCCCcc
Confidence 599999999988 55666777889999888775432 1112 799
Q ss_pred EEEEcCCCCccc------ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCC
Q 027785 88 GLVIPGGRAPEY------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 138 (219)
Q Consensus 88 ~liipGG~~~~~------~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g 138 (219)
+|++|||++..+ ...-..+++-++++.++++++.+||+|-++|.++|||.|
T Consensus 46 ~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPG 102 (231)
T COG0047 46 GVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPG 102 (231)
T ss_pred EEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCc
Confidence 999999975322 223367899999999999999999999999999999999
No 31
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.30 E-value=4.4e-11 Score=95.36 Aligned_cols=93 Identities=26% Similarity=0.413 Sum_probs=72.0
Q ss_pred CEEEEEecCCCCc-hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 9 RSVLLLCGDYMED-YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 9 ~kv~il~~~g~~~-~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
+||+|+.++|.+. .|. .+.|+.+|+++.++..... . ..++|
T Consensus 1 ~~v~Vl~~~G~n~~~~~---~~al~~~G~~~~~i~~~~~------------------------------~-----l~~~d 42 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDT---VYALRLLGVDAEIVWYEDG------------------------------S-----LPDYD 42 (227)
T ss_pred CeEEEEeCCCcCcHHHH---HHHHHHCCCeEEEEecCCC------------------------------C-----CCCCC
Confidence 3899999998863 344 5788889998888743210 1 23699
Q ss_pred EEEEcCCCCcc------cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCc
Q 027785 88 GLVIPGGRAPE------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR 139 (219)
Q Consensus 88 ~liipGG~~~~------~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~ 139 (219)
+|+||||.... .......+.++|+++.+++++|.+||.|.++|+++|+|+|.
T Consensus 43 ~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~ 100 (227)
T TIGR01737 43 GVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGA 100 (227)
T ss_pred EEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCc
Confidence 99999996421 12234678899999999999999999999999999999984
No 32
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.04 E-value=7e-10 Score=85.59 Aligned_cols=84 Identities=26% Similarity=0.351 Sum_probs=67.3
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL 89 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 89 (219)
||+|+..+| .+....+.|++.|.++.++++.. + ..+||+|
T Consensus 1 ~igvl~~qg----~~~e~~~~l~~~g~~~~~v~~~~----------------------------------~--l~~~d~l 40 (184)
T TIGR03800 1 KIGVLALQG----AVREHARALEALGVEGVEVKRPE----------------------------------Q--LDEIDGL 40 (184)
T ss_pred CEEEEEccC----CHHHHHHHHHHCCCEEEEECChH----------------------------------H--hccCCEE
Confidence 589999998 44557799999999888886521 1 2379999
Q ss_pred EEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 90 VIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 90 iipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+||||.+.. .+..+..+.++|+++.++++++.+||.|..+|+++
T Consensus 41 iipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~ 86 (184)
T TIGR03800 41 IIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKE 86 (184)
T ss_pred EECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhh
Confidence 999997532 23345678999999999999999999999999988
No 33
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=99.04 E-value=3.4e-09 Score=73.39 Aligned_cols=91 Identities=33% Similarity=0.578 Sum_probs=75.1
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV 90 (219)
Q Consensus 11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li 90 (219)
|++++.+++...++..+.+.|+.+++++++++....+ ... .....+||+++
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------~~~-------------~~~~~~~d~li 51 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGP----------------VES-------------DVDLDDYDGLI 51 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCc----------------eec-------------cCChhccCEEE
Confidence 5788999999999999999999999999999987642 100 12346899999
Q ss_pred EcCCCCccc-ccCChHHHHHHHHHHhcCCeEEEEehhHHHH
Q 027785 91 IPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130 (219)
Q Consensus 91 ipGG~~~~~-~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~L 130 (219)
+|||..... ...++.+++|++++.+++++++++|.|++++
T Consensus 52 i~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 52 LPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred ECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 999876432 2246899999999999999999999999998
No 34
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.01 E-value=1.5e-09 Score=84.93 Aligned_cols=90 Identities=20% Similarity=0.300 Sum_probs=72.3
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL 89 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 89 (219)
||+|++.+++....+..+...|+..|+++++..... .++ ..+||+|
T Consensus 2 ~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~--------------------------------~~~--l~~~d~i 47 (200)
T PRK13527 2 KIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRR--------------------------------PGD--LPDCDAL 47 (200)
T ss_pred EEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCC--------------------------------hHH--hccCCEE
Confidence 899999999998888899999999998777764421 012 2369999
Q ss_pred EEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 90 VIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 90 iipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+||||.+.. .......+.++|+++.++++++.+||.|.++|+.+
T Consensus 48 ii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~ 93 (200)
T PRK13527 48 IIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKE 93 (200)
T ss_pred EECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 999997532 22344568999999999999999999999999987
No 35
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.98 E-value=1.1e-09 Score=88.55 Aligned_cols=99 Identities=26% Similarity=0.348 Sum_probs=69.4
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
.||+|+.++|.+ .-.....+|+.+|+++..+....- + -.+.+..+||+
T Consensus 2 pkV~Vl~~pGtN--ce~e~~~A~~~aG~~~~~v~~~dl-------------------------~-----~~~~~l~~~~~ 49 (259)
T PF13507_consen 2 PKVAVLRFPGTN--CERETAAAFENAGFEPEIVHINDL-------------------------L-----SGESDLDDFDG 49 (259)
T ss_dssp -EEEEEE-TTEE--EHHHHHHHHHCTT-EEEEEECCHH-------------------------H-----TTS--GCC-SE
T ss_pred CEEEEEECCCCC--CHHHHHHHHHHcCCCceEEEEEec-------------------------c-----cccCchhhCcE
Confidence 489999999988 556678889999999988754310 0 00113458999
Q ss_pred EEEcCCCCccc-c----------cCChHHHHHHHHHHhc-CCeEEEEehhHHHHHhCcccCCc
Q 027785 89 LVIPGGRAPEY-L----------AMNDSVIDLVRKFSNS-GKTIASICHGQLILAAADVVKGR 139 (219)
Q Consensus 89 liipGG~~~~~-~----------~~~~~l~~~l~~~~~~-~~~v~~ic~G~~~La~aGlL~g~ 139 (219)
|+||||.+..+ + ..++.+.+-|++|.++ ++++.+||+|.++|.++|||.|.
T Consensus 50 lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~ 112 (259)
T PF13507_consen 50 LVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPGG 112 (259)
T ss_dssp EEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT-
T ss_pred EEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCc
Confidence 99999975322 1 2245678899999999 99999999999999999999983
No 36
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.98 E-value=1.6e-09 Score=82.46 Aligned_cols=89 Identities=22% Similarity=0.315 Sum_probs=66.7
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
.||+|+..+|.. ..-...|++.|.++.++.... + ..+||.
T Consensus 3 ~~igVLalqG~~----~Eh~~al~~lG~~v~~v~~~~----------------------------------~--l~~~D~ 42 (179)
T PRK13526 3 QKVGVLAIQGGY----QKHADMFKSLGVEVKLVKFNN----------------------------------D--FDSIDR 42 (179)
T ss_pred cEEEEEECCccH----HHHHHHHHHcCCcEEEECCHH----------------------------------H--HhCCCE
Confidence 589999999944 446778888888766654211 1 237999
Q ss_pred EEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh----CcccCC
Q 027785 89 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA----ADVVKG 138 (219)
Q Consensus 89 liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~----aGlL~g 138 (219)
|++|||.+.. .+..+..+.+.|+++.+ ++++++||.|..+|++ -|+++|
T Consensus 43 LILPGG~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~s~~Lg~idg 97 (179)
T PRK13526 43 LVIPGGESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKGEGYLNLLDL 97 (179)
T ss_pred EEECCChHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHccCCCCCCccE
Confidence 9999996543 44455679999999885 7899999999999999 355555
No 37
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.83 E-value=2.2e-08 Score=77.63 Aligned_cols=85 Identities=24% Similarity=0.382 Sum_probs=64.9
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
+||+|+...|- +......|+.+|.++..+++. .+ ..+||.
T Consensus 2 m~~~i~~~~g~----~~~~~~~l~~~g~~~~~~~~~----------------------------------~~--l~~~dg 41 (189)
T PRK13525 2 MKIGVLALQGA----VREHLAALEALGAEAVEVRRP----------------------------------ED--LDEIDG 41 (189)
T ss_pred CEEEEEEcccC----HHHHHHHHHHCCCEEEEeCCh----------------------------------hH--hccCCE
Confidence 48999998873 344567788899888777431 11 247999
Q ss_pred EEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|++|||.... ....+..+.+++++++++++||.+||.|.++|+.+
T Consensus 42 iii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 88 (189)
T PRK13525 42 LILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKE 88 (189)
T ss_pred EEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 9999997532 23345567899999999999999999999999974
No 38
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.82 E-value=3.3e-08 Score=65.38 Aligned_cols=91 Identities=32% Similarity=0.569 Sum_probs=72.1
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV 90 (219)
Q Consensus 11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li 90 (219)
|+++..++....++..+.+.+++.++.+.+++....+ ... .....++|+++
T Consensus 1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-------------~~~~~~~~~li 51 (92)
T cd03128 1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGP----------------VES-------------DVDLDDYDGLI 51 (92)
T ss_pred CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCc----------------ccc-------------cCCcccCCEEE
Confidence 4678888888888999999999999999999887642 000 12345899999
Q ss_pred EcCCCCccc-ccCChHHHHHHHHHHhcCCeEEEEehhHHHH
Q 027785 91 IPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130 (219)
Q Consensus 91 ipGG~~~~~-~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~L 130 (219)
+|||..... ...+..+.+|++++++++++++++|.|++++
T Consensus 52 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 52 LPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred ECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 999976432 2246899999999999999999999998753
No 39
>PRK07053 glutamine amidotransferase; Provisional
Probab=98.69 E-value=2.8e-07 Score=73.75 Aligned_cols=94 Identities=23% Similarity=0.171 Sum_probs=70.9
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
+++|.|+....++ .+..+.+.|+..|.+++++....+. .... +..+||
T Consensus 2 m~~ilviqh~~~e--~~g~i~~~L~~~g~~~~v~~~~~~~----------------------------~~~~--~~~~~d 49 (234)
T PRK07053 2 MKTAVAIRHVAFE--DLGSFEQVLGARGYRVRYVDVGVDD----------------------------LETL--DALEPD 49 (234)
T ss_pred CceEEEEECCCCC--CChHHHHHHHHCCCeEEEEecCCCc----------------------------cCCC--CccCCC
Confidence 4689999877666 6667899999999999888664321 0011 124799
Q ss_pred EEEEcCCCC-ccc---ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 88 GLVIPGGRA-PEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 88 ~liipGG~~-~~~---~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.|||+||.. +.. .+.-..+.++|+++.+.++|+.+||.|.++|+.+
T Consensus 50 ~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 99 (234)
T PRK07053 50 LLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARA 99 (234)
T ss_pred EEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence 999999863 321 2233578899999999999999999999999987
No 40
>PRK08250 glutamine amidotransferase; Provisional
Probab=98.68 E-value=3.2e-07 Score=73.51 Aligned_cols=93 Identities=15% Similarity=0.217 Sum_probs=67.6
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
+||+|+....++..+ ...+.++.+|+++++.....+ .. +.. +..+||+
T Consensus 1 m~i~vi~h~~~e~~g--~~~~~~~~~g~~~~~~~~~~g-----------------------~~------~p~-~~~~~d~ 48 (235)
T PRK08250 1 MRVHFIIHESFEAPG--AYLKWAENRGYDISYSRVYAG-----------------------EA------LPE-NADGFDL 48 (235)
T ss_pred CeEEEEecCCCCCch--HHHHHHHHCCCeEEEEEccCC-----------------------CC------CCC-CccccCE
Confidence 379999999999554 456777889988888654321 11 111 2347999
Q ss_pred EEEcCCCCc-cc-ccCC-----hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRAP-EY-LAMN-----DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~~-~~-~~~~-----~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+||.||... .. .... ....+||+++.++++|+.+||.|.++|+.+
T Consensus 49 vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 100 (235)
T PRK08250 49 LIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEA 100 (235)
T ss_pred EEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 999999642 21 1122 366899999999999999999999999987
No 41
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=98.65 E-value=9.7e-08 Score=76.53 Aligned_cols=85 Identities=26% Similarity=0.396 Sum_probs=65.8
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
+||+||..+| .+......|+++|.++.+++.. +++ .++|.
T Consensus 2 m~igVLa~qG----~~~e~~~aL~~lG~ev~~v~~~----------------------------------~~L--~~~Dg 41 (248)
T PLN02832 2 MAIGVLALQG----SFNEHIAALRRLGVEAVEVRKP----------------------------------EQL--EGVSG 41 (248)
T ss_pred cEEEEEeCCC----chHHHHHHHHHCCCcEEEeCCH----------------------------------HHh--ccCCE
Confidence 4899999999 4455578888899887776542 122 36899
Q ss_pred EEEcCCCCc--ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~~--~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
||+|||... ..+.....+.+.|+++.++++|+.++|.|.++|++.
T Consensus 42 LILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~ 88 (248)
T PLN02832 42 LIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLIFLAER 88 (248)
T ss_pred EEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 999998742 234444468889999989999999999999999876
No 42
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.63 E-value=2.7e-07 Score=72.09 Aligned_cols=77 Identities=30% Similarity=0.419 Sum_probs=59.5
Q ss_pred hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCc---ccc
Q 027785 24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP---EYL 100 (219)
Q Consensus 24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~---~~~ 100 (219)
+..-.+.|+++|.++.++++..+ +++ .++|+|++|||... ..+
T Consensus 13 y~e~~~~l~~~G~~v~~~s~~~~--------------------------------~~l--~~~D~lilPGG~~~~~~~~L 58 (198)
T cd03130 13 YPENLELLEAAGAELVPFSPLKD--------------------------------EEL--PDADGLYLGGGYPELFAEEL 58 (198)
T ss_pred cHHHHHHHHHCCCEEEEECCCCC--------------------------------CCC--CCCCEEEECCCchHHHHHHH
Confidence 44556788889999988876321 112 24999999998632 345
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc
Q 027785 101 AMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (219)
Q Consensus 101 ~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG 134 (219)
..+..+.+.|+++.+++++|.+||.|.++|++..
T Consensus 59 ~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 59 SANQSMRESIRAFAESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred HhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHh
Confidence 5667899999999999999999999999999864
No 43
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.61 E-value=1.7e-07 Score=73.33 Aligned_cols=85 Identities=22% Similarity=0.255 Sum_probs=64.5
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL 89 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 89 (219)
||+|+-+.+- .+....+.|+.+|+++.+++.. .+ ..+||++
T Consensus 2 ~~~v~~~~~~---~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~--~~~~d~i 42 (200)
T PRK13143 2 MIVIIDYGVG---NLRSVSKALERAGAEVVITSDP----------------------------------EE--ILDADGI 42 (200)
T ss_pred eEEEEECCCc---cHHHHHHHHHHCCCeEEEECCH----------------------------------HH--HccCCEE
Confidence 7888876633 4577788999999988877421 11 1379999
Q ss_pred EEcCCCCcc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 90 VIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 90 iipGG~~~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
++|||.... .+...+.+.++|+++.++++|+.+||.|.++|+++
T Consensus 43 ii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~ 87 (200)
T PRK13143 43 VLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGMQLLFES 87 (200)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence 999864332 23445678999999999999999999999999985
No 44
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.56 E-value=2.9e-07 Score=71.66 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=64.7
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV 90 (219)
Q Consensus 11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li 90 (219)
|+++.++... .+..+...+...|+++.++++.. + +.++|+|+
T Consensus 1 ~~~~~y~~~g--N~~~l~~~~~~~G~~~~~~~~~~----------------------------------~--~~~~d~li 42 (194)
T cd01750 1 IAVIRYPDIS--NFTDLDPLAREPGVDVRYVEVPE----------------------------------G--LGDADLII 42 (194)
T ss_pred CEeecCCCcc--CHHHHHHHHhcCCceEEEEeCCC----------------------------------C--CCCCCEEE
Confidence 4677776544 56677777888899988887642 1 24789999
Q ss_pred EcCCCCc-cccc--CChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc
Q 027785 91 IPGGRAP-EYLA--MNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (219)
Q Consensus 91 ipGG~~~-~~~~--~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG 134 (219)
+|||... ..+. .+..+.+.|+++.++++||.+||.|.++|++.-
T Consensus 43 lpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 43 LPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred ECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 9999742 2221 244688999999999999999999999999874
No 45
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.53 E-value=5.4e-07 Score=86.22 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=77.5
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCC--CCCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI--DPTK 85 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~--~~~~ 85 (219)
..||+|+.++|.+ .-.....+|+.+|+++..+....-. .+ .+ ..+++++ +..+
T Consensus 977 kpkvaIl~~pGtN--ce~d~a~Af~~aG~~~~~v~~~dl~--------------------~~-~i--~~s~~~~~~~l~~ 1031 (1239)
T TIGR01857 977 KPRVVIPVFPGTN--SEYDSAKAFEKEGAEVNLVIFRNLN--------------------EE-AL--VESVETMVDEIDK 1031 (1239)
T ss_pred CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEEecCc--------------------cc-cc--ccchhhhhccccc
Confidence 4699999999988 4456677788899988777543210 00 00 0112111 2358
Q ss_pred ccEEEEcCCCCccc-----------ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCc
Q 027785 86 YDGLVIPGGRAPEY-----------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR 139 (219)
Q Consensus 86 ~D~liipGG~~~~~-----------~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~ 139 (219)
||+|++|||++..+ ...++.+.+-+++|+++++++.+||+|-++|.+.|||.+.
T Consensus 1032 ~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~ 1096 (1239)
T TIGR01857 1032 SQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYG 1096 (1239)
T ss_pred CcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCc
Confidence 99999999975321 2345788999999999999999999999999999999863
No 46
>PRK06490 glutamine amidotransferase; Provisional
Probab=98.48 E-value=1.9e-06 Score=69.29 Aligned_cols=94 Identities=24% Similarity=0.213 Sum_probs=69.8
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
++||.||...+++ ....+.+.|+..|.+++++.+..+. .+ + ++ ..+||
T Consensus 7 ~~~vlvi~h~~~~--~~g~l~~~l~~~g~~~~v~~~~~~~-----------------------~~-p----~~--l~~~d 54 (239)
T PRK06490 7 KRPVLIVLHQERS--TPGRVGQLLQERGYPLDIRRPRLGD-----------------------PL-P----DT--LEDHA 54 (239)
T ss_pred CceEEEEecCCCC--CChHHHHHHHHCCCceEEEeccCCC-----------------------CC-C----Cc--ccccC
Confidence 4689999977777 5666789999999999887654220 00 1 12 24799
Q ss_pred EEEEcCCCCc-cc-ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 88 GLVIPGGRAP-EY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 88 ~liipGG~~~-~~-~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.++|.||... .. ......+.+||+++.+.++|+.+||-|.++|+.+
T Consensus 55 gvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~a 102 (239)
T PRK06490 55 GAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARH 102 (239)
T ss_pred EEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence 9999999753 21 1122457899999999999999999999999987
No 47
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=98.48 E-value=3.7e-07 Score=70.42 Aligned_cols=83 Identities=28% Similarity=0.417 Sum_probs=63.0
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV 90 (219)
Q Consensus 11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li 90 (219)
|+|++.+|... ...+.|++.|.++..+++.. + ..++|.++
T Consensus 1 igvl~~qg~~~----e~~~~l~~~g~~v~~v~~~~----------------------------------~--l~~~dgii 40 (183)
T cd01749 1 IGVLALQGDFR----EHIRALERLGVEVIEVRTPE----------------------------------D--LEGIDGLI 40 (183)
T ss_pred CEEEEecCCcH----HHHHHHHHCCCeEEEECCHH----------------------------------H--hccCCEEE
Confidence 57788877553 33388999999888886521 1 24799999
Q ss_pred EcCCCCc--ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 91 IPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 91 ipGG~~~--~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+|||... ........+.++|+++.++++++.++|.|..+|+.+
T Consensus 41 i~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~ 85 (183)
T cd01749 41 IPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKE 85 (183)
T ss_pred ECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 9998742 112344567899999999999999999999999976
No 48
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.47 E-value=1.4e-06 Score=83.93 Aligned_cols=101 Identities=18% Similarity=0.251 Sum_probs=76.6
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
..||+|+.++|.+ .-.....+|..+|+++..+.... +. -......+|+
T Consensus 1037 ~pkVaVl~~pGtN--~~~e~~~Af~~aGf~~~~V~~~d--------------------------l~----~~~~~L~~~~ 1084 (1307)
T PLN03206 1037 KPKVAIIREEGSN--GDREMAAAFYAAGFEPWDVTMSD--------------------------LL----NGRISLDDFR 1084 (1307)
T ss_pred CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEeee--------------------------cc----ccccccccee
Confidence 4699999999998 55666778889999887765431 00 0011235799
Q ss_pred EEEEcCCCCcc-----------cccCChHHHHHHHHHHh-cCCeEEEEehhHHHHHhCcccCCce
Q 027785 88 GLVIPGGRAPE-----------YLAMNDSVIDLVRKFSN-SGKTIASICHGQLILAAADVVKGRK 140 (219)
Q Consensus 88 ~liipGG~~~~-----------~~~~~~~l~~~l~~~~~-~~~~v~~ic~G~~~La~aGlL~g~~ 140 (219)
.|++|||++.. .+..++.+.+-+++|++ .++++.+||+|-++|.+.|||.|-.
T Consensus 1085 glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~ 1149 (1307)
T PLN03206 1085 GIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQ 1149 (1307)
T ss_pred EEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCc
Confidence 99999997421 23456788999999995 5999999999999999999998753
No 49
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=98.43 E-value=2.2e-06 Score=66.28 Aligned_cols=91 Identities=27% Similarity=0.368 Sum_probs=65.4
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCC---CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFG---VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
||+|+..+.... .....+.|++++ ++++++...... . ..+ ..+|
T Consensus 1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~~----------------------------~-~~~--~~~~ 47 (188)
T cd01741 1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAGE----------------------------L-LPD--LDDY 47 (188)
T ss_pred CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCCC----------------------------C-CCC--cccC
Confidence 477777765543 667778888887 566666544320 0 122 3589
Q ss_pred cEEEEcCCCCcc---cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 87 DGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 87 D~liipGG~~~~---~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|.|+++||.... .....+.+.++|+++.++++++.+||.|.++|+.+
T Consensus 48 dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~ 97 (188)
T cd01741 48 DGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARA 97 (188)
T ss_pred CEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence 999999997532 12223678999999999999999999999999976
No 50
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.38 E-value=2.2e-06 Score=83.08 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=75.7
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
+.||+|+.++|++ .-.....+|+.+|+++..+....- .-...+..+|+
T Consensus 1055 ~p~vail~~pG~N--~~~e~~~Af~~aGf~~~~v~~~dl------------------------------~~~~~~l~~~~ 1102 (1310)
T TIGR01735 1055 RPKVAILREQGVN--GDREMAAAFDRAGFEAWDVHMSDL------------------------------LAGRVHLDEFR 1102 (1310)
T ss_pred CceEEEEECCCCC--CHHHHHHHHHHhCCCcEEEEEecc------------------------------ccCCcchhhee
Confidence 4689999999998 445566688899998777654320 00111235799
Q ss_pred EEEEcCCCCcc-----------cccCChHHHHHHHHHH-hcCCeEEEEehhHHHHH-hCcccCCc
Q 027785 88 GLVIPGGRAPE-----------YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILA-AADVVKGR 139 (219)
Q Consensus 88 ~liipGG~~~~-----------~~~~~~~l~~~l~~~~-~~~~~v~~ic~G~~~La-~aGlL~g~ 139 (219)
.|++|||++.. .+..++.+.+-+++|+ ++++++.+||+|.++|. .+|||.|.
T Consensus 1103 ~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~ 1167 (1310)
T TIGR01735 1103 GLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGT 1167 (1310)
T ss_pred EEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCC
Confidence 99999996421 1345678899999999 78999999999999999 99999874
No 51
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.38 E-value=3e-06 Score=74.29 Aligned_cols=90 Identities=22% Similarity=0.236 Sum_probs=68.4
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
.||+|.-.+-|+. -+..-.+.|+..|.++..+++-.. . +.+++|+
T Consensus 246 ~~iava~d~af~f-~y~e~~~~L~~~g~~~~~~~~~~~-----------------------------~-----~l~~~D~ 290 (451)
T PRK01077 246 VRIAVARDAAFNF-YYPENLELLRAAGAELVFFSPLAD-----------------------------E-----ALPDCDG 290 (451)
T ss_pred ceEEEEecCcccc-cHHHHHHHHHHCCCEEEEeCCcCC-----------------------------C-----CCCCCCE
Confidence 4899998775443 233345778888999988876321 0 1237999
Q ss_pred EEEcCCCC---cccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~---~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|++|||.. ...+..+..+.+.|+++.++|++|.++|.|.++|++.
T Consensus 291 lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~ 338 (451)
T PRK01077 291 LYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGES 338 (451)
T ss_pred EEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence 99999963 2345667789999999999999999999999999975
No 52
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.35 E-value=3.7e-06 Score=81.67 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=74.6
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
+.||+|+.++|.+ .-.....+|+.+|+++..+....- ... .....+|+
T Consensus 1035 ~pkv~il~~pG~N--~~~e~~~Af~~aG~~~~~v~~~dl--------------------------~~~----~~~l~~~~ 1082 (1290)
T PRK05297 1035 RPKVAILREQGVN--SHVEMAAAFDRAGFDAIDVHMSDL--------------------------LAG----RVTLEDFK 1082 (1290)
T ss_pred CCeEEEEECCCCC--CHHHHHHHHHHcCCCeEEEEeecC--------------------------cCC----CCChhhCc
Confidence 4599999999998 456667788899998877654320 000 01235899
Q ss_pred EEEEcCCCCcc-----------cccCChHHHHHHHHHH-hcCCeEEEEehhHHHHHhCc-ccCC
Q 027785 88 GLVIPGGRAPE-----------YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAAD-VVKG 138 (219)
Q Consensus 88 ~liipGG~~~~-----------~~~~~~~l~~~l~~~~-~~~~~v~~ic~G~~~La~aG-lL~g 138 (219)
.|++|||++.. .+..++.+.+-+++|+ ++++++.+||+|.++|.+.| ++.|
T Consensus 1083 ~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~ 1146 (1290)
T PRK05297 1083 GLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPG 1146 (1290)
T ss_pred EEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCC
Confidence 99999996421 1245678899999988 78999999999999999998 7766
No 53
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=98.34 E-value=2e-06 Score=67.78 Aligned_cols=92 Identities=18% Similarity=0.263 Sum_probs=65.8
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
+||+|+-+..- .+......|+..|+++.+++... ++ .++|.
T Consensus 2 ~~v~iid~~~G---N~~sl~~al~~~g~~v~vv~~~~----------------------------------~l--~~~d~ 42 (210)
T CHL00188 2 MKIGIIDYSMG---NLHSVSRAIQQAGQQPCIINSES----------------------------------EL--AQVHA 42 (210)
T ss_pred cEEEEEEcCCc---cHHHHHHHHHHcCCcEEEEcCHH----------------------------------Hh--hhCCE
Confidence 48999998733 45667888888899888774311 11 35899
Q ss_pred EEEcCCCCcc----cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC---------cccCCce
Q 027785 89 LVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA---------DVVKGRK 140 (219)
Q Consensus 89 liipGG~~~~----~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a---------GlL~g~~ 140 (219)
||+||+..+. .+. ...+.+.|+++.++++|+.+||.|.++|++. |+++|+-
T Consensus 43 iIlPG~g~~~~~~~~l~-~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v 106 (210)
T CHL00188 43 LVLPGVGSFDLAMKKLE-KKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQV 106 (210)
T ss_pred EEECCCCchHHHHHHHH-HCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEE
Confidence 9999954422 121 2246677888889999999999999999985 5677743
No 54
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=98.34 E-value=1.3e-06 Score=65.94 Aligned_cols=84 Identities=24% Similarity=0.353 Sum_probs=62.6
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCC-CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFG-VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag-~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
+||+|+...| ++..=.+.+++++ .++..+-. .++ .+..|
T Consensus 1 m~IGVLalQG----~v~EH~~~l~~~~~~e~~~Vk~----------------------------------~~d--L~~~d 40 (194)
T COG0311 1 MKIGVLALQG----AVEEHLEALEKAGGAEVVEVKR----------------------------------PED--LEGVD 40 (194)
T ss_pred CeEEEEEecc----cHHHHHHHHHhhcCCceEEEcC----------------------------------HHH--hccCc
Confidence 3899999999 5556666777775 44333311 122 24799
Q ss_pred EEEEcCCCCc--ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785 88 GLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (219)
Q Consensus 88 ~liipGG~~~--~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~ 132 (219)
+||||||.+. ..+.....+.+-|+++.++|+|+.+.|+|..+||+
T Consensus 41 ~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLak 87 (194)
T COG0311 41 GLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAK 87 (194)
T ss_pred EEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhh
Confidence 9999999763 33555567888999999999999999999999996
No 55
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=98.28 E-value=2.1e-06 Score=67.08 Aligned_cols=76 Identities=24% Similarity=0.251 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccc-
Q 027785 22 YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL- 100 (219)
Q Consensus 22 ~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~- 100 (219)
..+......|++.|+++.+++... + ..++|.|+|||+..+...
T Consensus 9 ~~~~~~~~~l~~~g~~v~v~~~~~----------------------------------~--l~~~d~iiipG~~~~~~~~ 52 (198)
T cd01748 9 GNLRSVANALERLGAEVIITSDPE----------------------------------E--ILSADKLILPGVGAFGDAM 52 (198)
T ss_pred ChHHHHHHHHHHCCCeEEEEcChH----------------------------------H--hccCCEEEECCCCcHHHHH
Confidence 366777899999999888875310 1 236999999987433211
Q ss_pred --cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 101 --AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 101 --~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
...+.+.++|+++.++++||.+||.|.++|+.+
T Consensus 53 ~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~ 87 (198)
T cd01748 53 ANLRERGLIEALKEAIASGKPFLGICLGMQLLFES 87 (198)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccc
Confidence 123457899999999999999999999999997
No 56
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.26 E-value=2.1e-06 Score=67.47 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=60.3
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV 90 (219)
Q Consensus 11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li 90 (219)
|+|+-+. ......+.+.|+..|.+++++... .+ ..+||.||
T Consensus 2 i~~~d~~---~~~~~~i~~~l~~~G~~v~~~~~~----------------------------------~~--l~~~d~ii 42 (205)
T PRK13141 2 IAIIDYG---MGNLRSVEKALERLGAEAVITSDP----------------------------------EE--ILAADGVI 42 (205)
T ss_pred EEEEEcC---CchHHHHHHHHHHCCCeEEEECCH----------------------------------HH--hccCCEEE
Confidence 4445444 335688899999999888886321 11 23699999
Q ss_pred EcCCCCccc-c--cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 91 IPGGRAPEY-L--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 91 ipGG~~~~~-~--~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
||||..... . ...+.+.++|+++.++++|+.+||.|.++|+..
T Consensus 43 ipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~ 88 (205)
T PRK13141 43 LPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGMQLLFES 88 (205)
T ss_pred ECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhc
Confidence 999643221 1 112357899999999999999999999999986
No 57
>PHA03366 FGAM-synthase; Provisional
Probab=98.24 E-value=8.7e-06 Score=79.08 Aligned_cols=97 Identities=22% Similarity=0.178 Sum_probs=75.3
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
..||+|+.++|.+ .-.....+|..+||++..+.... +..... ..+|+
T Consensus 1028 ~prVaIl~~pG~N--~~~e~~~Af~~aGf~~~~v~~~d--------------------------L~~~~~-----l~~f~ 1074 (1304)
T PHA03366 1028 RHRVAVLLLPGCP--GPHALLAAFTNAGFDPYPVSIEE--------------------------LKDGTF-----LDEFS 1074 (1304)
T ss_pred CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEeec--------------------------CCCCCc-----cccce
Confidence 4699999999998 45666778889999988776532 000111 34799
Q ss_pred EEEEcCCCCcc-----------cccCChHHHHHHHHHHh-cCCeEEEEeh-hHHHHHhCcccC
Q 027785 88 GLVIPGGRAPE-----------YLAMNDSVIDLVRKFSN-SGKTIASICH-GQLILAAADVVK 137 (219)
Q Consensus 88 ~liipGG~~~~-----------~~~~~~~l~~~l~~~~~-~~~~v~~ic~-G~~~La~aGlL~ 137 (219)
.|++|||++.. .+..++.+.+.+++|++ +++++.+||+ |.++|.+.|+|.
T Consensus 1075 glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~ 1137 (1304)
T PHA03366 1075 GLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVG 1137 (1304)
T ss_pred EEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCcc
Confidence 99999997531 13467899999999995 5999999999 999999999994
No 58
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=98.24 E-value=4.5e-06 Score=64.08 Aligned_cols=75 Identities=29% Similarity=0.365 Sum_probs=56.7
Q ss_pred HHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCChH
Q 027785 26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDS 105 (219)
Q Consensus 26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~~ 105 (219)
...+.++.+|.++.++..+.. .++.+..+||.|+++||.+.. .+...
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~-------------------------------~~~~~~~~~dgiil~GG~~~~--~~~~~ 57 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTD-------------------------------AEEILKLDPDGIFLSNGPGDP--ALLDE 57 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCC-------------------------------HHHHhhcCCCEEEECCCCCCh--hHhHH
Confidence 457788888988888755421 111222479999999997531 23467
Q ss_pred HHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 106 VIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 106 l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
..++++++.++++||.+||.|.++|+.+
T Consensus 58 ~~~~~~~~~~~~~PvlGIC~G~Q~l~~~ 85 (178)
T cd01744 58 AIKTVRKLLGKKIPIFGICLGHQLLALA 85 (178)
T ss_pred HHHHHHHHHhCCCCEEEECHHHHHHHHH
Confidence 8899999999999999999999999975
No 59
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=98.21 E-value=8.6e-06 Score=63.19 Aligned_cols=87 Identities=15% Similarity=0.301 Sum_probs=62.2
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
|||+|+=. .++.-..+.+.|++.|.+++++..+.. ..+++ ..||.
T Consensus 2 ~~iliid~---~dsf~~~i~~~l~~~g~~~~v~~~~~~------------------------------~~~~l--~~~d~ 46 (190)
T PRK06895 2 TKLLIINN---HDSFTFNLVDLIRKLGVPMQVVNVEDL------------------------------DLDEV--ENFSH 46 (190)
T ss_pred cEEEEEeC---CCchHHHHHHHHHHcCCcEEEEECCcc------------------------------ChhHh--ccCCE
Confidence 46666643 222345589999999999988865421 01222 36899
Q ss_pred EEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|||.||.+.. ...+.+.++|++ +++++|+.+||-|.++|+.+
T Consensus 47 iIi~gGp~~~--~~~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~ 88 (190)
T PRK06895 47 ILISPGPDVP--RAYPQLFAMLER-YHQHKSILGVCLGHQTLCEF 88 (190)
T ss_pred EEECCCCCCh--HHhhHHHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 9999988732 134567889986 78899999999999999987
No 60
>PRK05665 amidotransferase; Provisional
Probab=98.17 E-value=2.8e-05 Score=62.46 Aligned_cols=50 Identities=20% Similarity=0.401 Sum_probs=41.0
Q ss_pred CCccEEEEcCCCC-cc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRA-PE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~-~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
..||.+||.||.. +. ..+.-..+.+||++++++++++.+||-|.++||.+
T Consensus 56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~A 107 (240)
T PRK05665 56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALL 107 (240)
T ss_pred ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHH
Confidence 4799999999964 32 12223568999999999999999999999999987
No 61
>PRK09065 glutamine amidotransferase; Provisional
Probab=98.16 E-value=1.8e-05 Score=63.49 Aligned_cols=50 Identities=28% Similarity=0.515 Sum_probs=40.9
Q ss_pred CCccEEEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.+||.|||.||.... ..+....+.+||+++.++++||.+||-|.++|+.+
T Consensus 53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 104 (237)
T PRK09065 53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHA 104 (237)
T ss_pred hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHH
Confidence 479999999997531 12223567999999999999999999999999987
No 62
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.15 E-value=1.9e-05 Score=76.32 Aligned_cols=98 Identities=17% Similarity=0.123 Sum_probs=75.2
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
..||+|+.++|.+ .-.....+|..+||++..+....- ..... ..+|+
T Consensus 929 ~p~VaIl~~pG~N--~~~e~~~Af~~aGf~~~~v~~~dl--------------------------~~~~~-----l~~f~ 975 (1202)
T TIGR01739 929 RHQVAVLLLPGQS--VPHGLLAALTNAGFDPRIVSITEL--------------------------KKTDF-----LDTFS 975 (1202)
T ss_pred CCeEEEEeCCCCC--CHHHHHHHHHHcCCceEEEEeccC--------------------------CCCCc-----hhheE
Confidence 4589999999998 556667788899999888765421 00111 23799
Q ss_pred EEEEcCCCCcc-----------cccCChHHHHHHHHHHh-cCCeEEEEeh-hHHHHHhCcccCC
Q 027785 88 GLVIPGGRAPE-----------YLAMNDSVIDLVRKFSN-SGKTIASICH-GQLILAAADVVKG 138 (219)
Q Consensus 88 ~liipGG~~~~-----------~~~~~~~l~~~l~~~~~-~~~~v~~ic~-G~~~La~aGlL~g 138 (219)
.|++|||++.. .+..++.+.+.+++|++ .++++.+||+ |.++|.+.|+|..
T Consensus 976 glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~ 1039 (1202)
T TIGR01739 976 GLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGY 1039 (1202)
T ss_pred EEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcC
Confidence 99999997521 13457899999999995 5999999999 9999999999853
No 63
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.13 E-value=1.1e-05 Score=63.50 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=56.7
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCe--EEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVS--VDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~--v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
+||+|+=|..-+ +......|++.|.+ +.+++. -+++ .++
T Consensus 2 ~~~~iid~g~gn---~~s~~~al~~~g~~~~v~~~~~----------------------------------~~~l--~~~ 42 (209)
T PRK13146 2 MTVAIIDYGSGN---LRSAAKALERAGAGADVVVTAD----------------------------------PDAV--AAA 42 (209)
T ss_pred CeEEEEECCCCh---HHHHHHHHHHcCCCccEEEECC----------------------------------HHHh--cCC
Confidence 589988776444 45556788888873 333321 1222 479
Q ss_pred cEEEEcCCCCcc----cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc
Q 027785 87 DGLVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (219)
Q Consensus 87 D~liipGG~~~~----~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG 134 (219)
|.|||||+.... .+........+++..++.++|+.+||.|.++|++++
T Consensus 43 d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~ 94 (209)
T PRK13146 43 DRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERG 94 (209)
T ss_pred CEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcc
Confidence 999999975321 122222233455555678999999999999999984
No 64
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=98.07 E-value=1.6e-05 Score=61.58 Aligned_cols=78 Identities=19% Similarity=0.318 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCccccc
Q 027785 22 YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLA 101 (219)
Q Consensus 22 ~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~ 101 (219)
.-...+...|++.|++++++..+.. .++++..++|.||+|||.+...
T Consensus 9 ~~~~~l~~~l~~~g~~~~~~~~~~~-------------------------------~~~~~~~~~~glii~Gg~~~~~-- 55 (188)
T TIGR00888 9 QYTQLIARRLRELGVYSELVPNTTP-------------------------------LEEIREKNPKGIILSGGPSSVY-- 55 (188)
T ss_pred hHHHHHHHHHHHcCCEEEEEeCCCC-------------------------------HHHHhhcCCCEEEECCCCCCcC--
Confidence 3456677889999998888755421 1111112467999999975322
Q ss_pred CChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 102 MNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+.....|+++..++++||.+||.|.++|+.+
T Consensus 56 -~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~ 86 (188)
T TIGR00888 56 -AENAPRADEKIFELGVPVLGICYGMQLMAKQ 86 (188)
T ss_pred -cCCchHHHHHHHhCCCCEEEECHHHHHHHHh
Confidence 2234678888899999999999999999976
No 65
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.95 E-value=1.1e-05 Score=60.69 Aligned_cols=54 Identities=26% Similarity=0.450 Sum_probs=45.6
Q ss_pred CCCCccEEEEcCCCCc---ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcc
Q 027785 82 DPTKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV 135 (219)
Q Consensus 82 ~~~~~D~liipGG~~~---~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGl 135 (219)
.++++|+|++|||.-. ..+.++..+.+.|+++.++|++|.++|.|-.+|.++=.
T Consensus 4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 3578999999999742 33566788999999999999999999999999997643
No 66
>PRK07567 glutamine amidotransferase; Provisional
Probab=97.94 E-value=6e-05 Score=60.70 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=57.4
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCe---EEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVS---VDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 85 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~---v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 85 (219)
|+|+|+-....+........+.|+..+.. +.++....+ +.... +..+
T Consensus 2 ~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~--~~~~ 51 (242)
T PRK07567 2 KPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDRE----------------------------PLPDL--DLDD 51 (242)
T ss_pred CcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccC----------------------------CCCCC--CHhh
Confidence 45877776554443236667777777654 443322211 00011 2357
Q ss_pred ccEEEEcCCCCc-ccc--cCCh---HHH----HHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 86 YDGLVIPGGRAP-EYL--AMND---SVI----DLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 86 ~D~liipGG~~~-~~~--~~~~---~l~----~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
||.+||.||... ... ...+ .+. ++++...++++||.+||.|.++|+.+
T Consensus 52 ~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a 109 (242)
T PRK07567 52 YSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHH 109 (242)
T ss_pred ccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHH
Confidence 999999999742 211 1122 233 44555558999999999999999987
No 67
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.94 E-value=6.2e-05 Score=66.01 Aligned_cols=90 Identities=21% Similarity=0.294 Sum_probs=67.2
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
.||+|+-.+-|+..= ..=.+.|++.|.++..+++-.+ . ++ +++|+
T Consensus 245 ~~Iava~d~afnFy~-~~~~~~L~~~g~~~~~~~~~~d-----------------------------~---~l--~~~d~ 289 (449)
T TIGR00379 245 VRIAVAQDQAFNFYY-QDNLDALTHNAAELVPFSPLED-----------------------------T---EL--PDVDA 289 (449)
T ss_pred cEEEEEechhhceeH-HHHHHHHHHCCCEEEEECCccC-----------------------------C---CC--CCCCE
Confidence 479988877665411 2345667778988888876421 1 11 27899
Q ss_pred EEEcCCCCc---ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~~---~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|+||||... ..+..+..+.+.|+++.++|++|.++|.|-++|++.
T Consensus 290 l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~ 337 (449)
T TIGR00379 290 VYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQS 337 (449)
T ss_pred EEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence 999999742 235557789999999999999999999999999976
No 68
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.93 E-value=2.9e-05 Score=60.54 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=52.3
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL 89 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 89 (219)
+|+|+=|..- -+..+...|++.|.++.++... +++ .++|.|
T Consensus 2 ~i~iid~g~g---n~~s~~~~l~~~g~~~~~v~~~----------------------------------~~~--~~~d~i 42 (196)
T PRK13170 2 NVVIIDTGCA---NLSSVKFAIERLGYEPVVSRDP----------------------------------DVI--LAADKL 42 (196)
T ss_pred eEEEEeCCCc---hHHHHHHHHHHCCCeEEEECCH----------------------------------HHh--CCCCEE
Confidence 6777665433 3455666888889888777432 112 257899
Q ss_pred EEcCCCCcccc---cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 90 VIPGGRAPEYL---AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 90 iipGG~~~~~~---~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|+||+..+... .....+.++|+ +.++||.+||.|.++|+.+
T Consensus 43 IlPG~G~~~~~~~~l~~~~l~~~i~---~~~~PilGIClG~Qll~~~ 86 (196)
T PRK13170 43 FLPGVGTAQAAMDQLRERELIDLIK---ACTQPVLGICLGMQLLGER 86 (196)
T ss_pred EECCCCchHHHHHHHHHcChHHHHH---HcCCCEEEECHHHHHHhhh
Confidence 99985432211 11122444554 4589999999999999987
No 69
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.92 E-value=6.8e-05 Score=57.55 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=50.9
Q ss_pred hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCC
Q 027785 24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMN 103 (219)
Q Consensus 24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~ 103 (219)
...+...|+..|.++.++..+.. .++.+..++|.||+|||.+.......
T Consensus 11 ~~~~~~~l~~~G~~~~~~~~~~~-------------------------------~~~~~~~~~dgvIl~Gg~~~~~~~~~ 59 (181)
T cd01742 11 THLIARRVRELGVYSEILPNTTP-------------------------------LEEIKLKNPKGIILSGGPSSVYEEDA 59 (181)
T ss_pred HHHHHHHHHhcCceEEEecCCCC-------------------------------hhhhcccCCCEEEECCCccccccccc
Confidence 35568888889988887755421 11112347999999999753221112
Q ss_pred hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 104 DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 104 ~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+.+. ++..+.++|+.+||.|.++|+.+
T Consensus 60 ~~~~---~~~~~~~~PilGIC~G~Qll~~~ 86 (181)
T cd01742 60 PRVD---PEIFELGVPVLGICYGMQLIAKA 86 (181)
T ss_pred chhh---HHHHhcCCCEEEEcHHHHHHHHh
Confidence 3333 44455699999999999999985
No 70
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.92 E-value=3.4e-05 Score=60.28 Aligned_cols=49 Identities=16% Similarity=0.320 Sum_probs=38.2
Q ss_pred CccEEEEcCCCCccc-c--cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 85 KYDGLVIPGGRAPEY-L--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 85 ~~D~liipGG~~~~~-~--~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
++|.||+||+..+.. . .....+.++|+++.+.++||.+||.|.++|+.+
T Consensus 37 ~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~ 88 (199)
T PRK13181 37 GADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFES 88 (199)
T ss_pred cCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhh
Confidence 689999999654211 1 112346788999999999999999999999997
No 71
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=97.91 E-value=4.5e-05 Score=59.45 Aligned_cols=74 Identities=26% Similarity=0.229 Sum_probs=52.9
Q ss_pred hhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCccc---
Q 027785 23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEY--- 99 (219)
Q Consensus 23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~--- 99 (219)
.+..+...|+..|.+++++..+. + ..++|.|++||+.....
T Consensus 10 n~~~l~~~l~~~g~~v~v~~~~~----------------------------------~--l~~~d~lii~G~~~~~~~~~ 53 (196)
T TIGR01855 10 NLGSVKRALKRVGAEPVVVKDSK----------------------------------E--AELADKLILPGVGAFGAAMA 53 (196)
T ss_pred HHHHHHHHHHHCCCcEEEEcCHH----------------------------------H--hccCCEEEECCCCCHHHHHH
Confidence 67888889999998887775211 1 13699999998543211
Q ss_pred -ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 100 -LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 100 -~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+.... +..+++++.+.++||.++|.|.++|+.+
T Consensus 54 ~l~~~~-~~~l~~~~~~~~~pvlGiC~G~Qll~~~ 87 (196)
T TIGR01855 54 RLRENG-LDLFVELVVRLGKPVLGICLGMQLLFER 87 (196)
T ss_pred HHHHcC-cHHHHHHHHhCCCCEEEECHHHHHhhhc
Confidence 11112 3445587888999999999999999998
No 72
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=97.91 E-value=2.2e-05 Score=59.87 Aligned_cols=59 Identities=31% Similarity=0.521 Sum_probs=41.4
Q ss_pred CccEEEEcCCCCc--ccccCChHHHHHHHHHHhcC-CeEEEEehhHHHHHhC------cccCCceEee
Q 027785 85 KYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA------DVVKGRKCTA 143 (219)
Q Consensus 85 ~~D~liipGG~~~--~~~~~~~~l~~~l~~~~~~~-~~v~~ic~G~~~La~a------GlL~g~~~t~ 143 (219)
+.|.||||||... ..+.....+.+-|+++.+.| +||.+.|+|..+||+. ..|.+..+++
T Consensus 33 ~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~v~~~~q~~Lg~ldi~V 100 (188)
T PF01174_consen 33 GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKEVEGQGQPLLGLLDITV 100 (188)
T ss_dssp T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEEECSSCCTSS--EEEEE
T ss_pred cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhhhhhcccccccceeEEE
Confidence 6899999999753 23445567899999999998 9999999999999974 2344445554
No 73
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=97.89 E-value=0.00015 Score=56.54 Aligned_cols=50 Identities=32% Similarity=0.508 Sum_probs=41.6
Q ss_pred CCccEEEEcCCCCcccccC--ChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAPEYLAM--NDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~--~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
..+|.+||.||+..-.... .+...+||++....+++|.+||.|.++||.+
T Consensus 44 ~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~ 95 (198)
T COG0518 44 DSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKA 95 (198)
T ss_pred cCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHH
Confidence 3569999999985322233 6889999999999999999999999999975
No 74
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=97.89 E-value=6.4e-05 Score=59.43 Aligned_cols=80 Identities=19% Similarity=0.360 Sum_probs=57.7
Q ss_pred hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCC
Q 027785 24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMN 103 (219)
Q Consensus 24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~ 103 (219)
.....+.|++.|+++.++..+... + + ...+. ...||.|||.||++.. .+.
T Consensus 13 ~~~~~~~l~~~G~~~~~~~~~~~~------------------------~-~--~~~~~-~~~~dgliisGGp~~~--~~~ 62 (214)
T PRK07765 13 VFNLVQYLGQLGVEAEVWRNDDPR------------------------L-A--DEAAV-AAQFDGVLLSPGPGTP--ERA 62 (214)
T ss_pred HHHHHHHHHHcCCcEEEEECCCcC------------------------H-H--HHHHh-hcCCCEEEECCCCCCh--hhc
Confidence 345677888999999888665310 0 0 01111 2369999999998632 234
Q ss_pred hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 104 DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 104 ~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
....+|++++.++++||.+||-|.++|+.+
T Consensus 63 ~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a 92 (214)
T PRK07765 63 GASIDMVRACAAAGTPLLGVCLGHQAIGVA 92 (214)
T ss_pred chHHHHHHHHHhCCCCEEEEccCHHHHHHH
Confidence 556799999999999999999999999987
No 75
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=97.85 E-value=5.5e-05 Score=58.53 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=58.0
Q ss_pred EEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEc
Q 027785 13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIP 92 (219)
Q Consensus 13 il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liip 92 (219)
|++-|+++..- ..+.+.|++.|.++.++..+.. +++++...+||.||+.
T Consensus 2 il~idn~Dsft-~nl~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iils 50 (187)
T PRK08007 2 ILLIDNYDSFT-WNLYQYFCELGADVLVKRNDAL------------------------------TLADIDALKPQKIVIS 50 (187)
T ss_pred EEEEECCCccH-HHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHHhcCCCEEEEc
Confidence 44545544222 3467888888998888765421 1222222368999999
Q ss_pred CCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 93 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 93 GG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
||++... +......+++. +++++||.+||-|.++|+.+
T Consensus 51 ~GPg~p~--~~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a 88 (187)
T PRK08007 51 PGPCTPD--EAGISLDVIRH-YAGRLPILGVCLGHQAMAQA 88 (187)
T ss_pred CCCCChH--HCCccHHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence 9986321 23345666765 57889999999999999987
No 76
>PRK00784 cobyric acid synthase; Provisional
Probab=97.84 E-value=6e-05 Score=66.80 Aligned_cols=49 Identities=18% Similarity=0.351 Sum_probs=40.2
Q ss_pred CccEEEEcCCCCcc---cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 85 KYDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 85 ~~D~liipGG~~~~---~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
++|.|++|||.... .+..+..+.+.|+++.++|++|.++|.|-.+|++.
T Consensus 290 ~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~ 341 (488)
T PRK00784 290 DADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR 341 (488)
T ss_pred cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhh
Confidence 78999999997421 22345568899999999999999999999999974
No 77
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=97.83 E-value=6e-05 Score=58.50 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785 25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND 104 (219)
Q Consensus 25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~ 104 (219)
..+.+.|++.|.++.++..+.. .++++...++|.||+-||++... +..
T Consensus 13 ~nl~~~l~~~~~~~~v~~~~~~------------------------------~~~~~~~~~~~~iilsgGP~~~~--~~~ 60 (191)
T PRK06774 13 YNLYQYFCELGTEVMVKRNDEL------------------------------QLTDIEQLAPSHLVISPGPCTPN--EAG 60 (191)
T ss_pred HHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHHhcCCCeEEEcCCCCChH--hCC
Confidence 4478888999999988865431 12222223689999999986321 223
Q ss_pred HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 105 SVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
....+++. +++++||.+||-|.++|+.+
T Consensus 61 ~~~~~i~~-~~~~~PiLGIC~G~Qlla~~ 88 (191)
T PRK06774 61 ISLAVIRH-FADKLPILGVCLGHQALGQA 88 (191)
T ss_pred CchHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence 34566654 57799999999999999987
No 78
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.82 E-value=0.00012 Score=65.26 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=61.4
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
.++|+|+=|..= .+......|+..|+++.++... ++ ...+|
T Consensus 6 ~~~i~iiDyG~G---N~~sl~~al~~~G~~v~~v~~~----------------------------------~~--l~~~D 46 (538)
T PLN02617 6 DSEVTLLDYGAG---NVRSVRNAIRHLGFTIKDVQTP----------------------------------ED--ILNAD 46 (538)
T ss_pred CCeEEEEECCCC---CHHHHHHHHHHCCCeEEEECCh----------------------------------hh--hccCC
Confidence 468887765433 4556677888889888766321 11 24799
Q ss_pred EEEEcCCCCccc---ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 88 GLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 88 ~liipGG~~~~~---~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.||+||+..... ......+.+.|+++.+.++|+.+||.|.++|+++
T Consensus 47 ~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~ 95 (538)
T PLN02617 47 RLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFES 95 (538)
T ss_pred EEEECCCCCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence 999999754321 1122347788999999999999999999999975
No 79
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=97.82 E-value=8.9e-05 Score=57.12 Aligned_cols=85 Identities=26% Similarity=0.298 Sum_probs=62.8
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
++|+|+=|.- -.+......|+++|+++.+.+... ++ ...|.
T Consensus 2 ~~i~IIDyg~---GNL~Sv~~Aler~G~~~~vs~d~~----------------------------------~i--~~AD~ 42 (204)
T COG0118 2 MMVAIIDYGS---GNLRSVKKALERLGAEVVVSRDPE----------------------------------EI--LKADK 42 (204)
T ss_pred CEEEEEEcCc---chHHHHHHHHHHcCCeeEEecCHH----------------------------------HH--hhCCE
Confidence 4788887653 356777888889998876643321 12 36999
Q ss_pred EEEcCCCC---cc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRA---PE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~---~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
||+||=.. ++ .+. ...+.+.|++..+.++|+.+||-|.++|.+.
T Consensus 43 liLPGVGaf~~am~~L~-~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~ 90 (204)
T COG0118 43 LILPGVGAFGAAMANLR-ERGLIEAIKEAVESGKPFLGICLGMQLLFER 90 (204)
T ss_pred EEecCCCCHHHHHHHHH-hcchHHHHHHHHhcCCCEEEEeHhHHhhhhc
Confidence 99998422 22 233 3478999999999999999999999999875
No 80
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=97.77 E-value=0.00014 Score=61.76 Aligned_cols=87 Identities=24% Similarity=0.283 Sum_probs=61.8
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
+||+++=+ |+. ......|.+.|.++.++..+. +++++...++|.
T Consensus 178 ~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~~DG 221 (360)
T PRK12564 178 YKVVAIDF-GVK----RNILRELAERGCRVTVVPATT-------------------------------TAEEILALNPDG 221 (360)
T ss_pred CEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCC-------------------------------CHHHHHhcCCCE
Confidence 46666554 332 357778888898888875432 112222226999
Q ss_pred EEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|+++||++.. .+.+..+++++++.++++||.+||.|.++|+.+
T Consensus 222 IvLSgGPgdp--~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a 264 (360)
T PRK12564 222 VFLSNGPGDP--AALDYAIEMIRELLEKKIPIFGICLGHQLLALA 264 (360)
T ss_pred EEEeCCCCCh--HHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 9999998632 223678899999999899999999999999976
No 81
>PRK05670 anthranilate synthase component II; Provisional
Probab=97.77 E-value=0.00012 Score=56.69 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=55.1
Q ss_pred chhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccc
Q 027785 21 DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL 100 (219)
Q Consensus 21 ~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~ 100 (219)
++=.....+.|++.|+++.++..+... ...+++ .++|.|||.||++...
T Consensus 9 d~f~~~i~~~l~~~g~~~~v~~~~~~~---------------------------~~~~~~---~~~dglIlsgGpg~~~- 57 (189)
T PRK05670 9 DSFTYNLVQYLGELGAEVVVYRNDEIT---------------------------LEEIEA---LNPDAIVLSPGPGTPA- 57 (189)
T ss_pred CchHHHHHHHHHHCCCcEEEEECCCCC---------------------------HHHHHh---CCCCEEEEcCCCCChH-
Confidence 334466788888999999888664310 001222 2489999999886321
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 101 AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 101 ~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+......+|++ ..+++||.+||-|.++|+.+
T Consensus 58 -d~~~~~~~l~~-~~~~~PvLGIClG~Qlla~a 88 (189)
T PRK05670 58 -EAGISLELIRE-FAGKVPILGVCLGHQAIGEA 88 (189)
T ss_pred -HcchHHHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence 22345677776 46789999999999999987
No 82
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=97.76 E-value=0.00013 Score=56.56 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785 25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND 104 (219)
Q Consensus 25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~ 104 (219)
....+.|+..|+++.++..+.. +++++...++|.|||.||++... +..
T Consensus 13 ~~~~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iilsgGpg~p~--~~~ 60 (188)
T TIGR00566 13 YNLVQYFCELGAEVVVKRNDSL------------------------------TLQEIEALLPLLIVISPGPCTPN--EAG 60 (188)
T ss_pred HHHHHHHHHcCCceEEEECCCC------------------------------CHHHHHhcCCCEEEEcCCCCChh--hcc
Confidence 3466778888988877754421 11222223589999999986321 223
Q ss_pred HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 105 SVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
...++++++ ++++||.+||.|.++|+.+
T Consensus 61 ~~~~~i~~~-~~~~PvLGIC~G~Qll~~~ 88 (188)
T TIGR00566 61 ISLEAIRHF-AGKLPILGVCLGHQAMGQA 88 (188)
T ss_pred hhHHHHHHh-ccCCCEEEECHHHHHHHHH
Confidence 347888877 6789999999999999977
No 83
>PRK05637 anthranilate synthase component II; Provisional
Probab=97.73 E-value=0.00015 Score=57.01 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=57.9
Q ss_pred CEEEEEec-CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 9 RSVLLLCG-DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 9 ~kv~il~~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
+||+++=+ |+|. ..+.+.|+..|..++++..+.. ++++....||
T Consensus 2 ~~il~iD~~dsf~----~nl~~~l~~~g~~~~v~~~~~~-------------------------------~~~l~~~~~~ 46 (208)
T PRK05637 2 THVVLIDNHDSFV----YNLVDAFAVAGYKCTVFRNTVP-------------------------------VEEILAANPD 46 (208)
T ss_pred CEEEEEECCcCHH----HHHHHHHHHCCCcEEEEeCCCC-------------------------------HHHHHhcCCC
Confidence 46655543 3433 5578889999999888865421 1222223689
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.||+-||++... +.....++++... .++||.+||.|.++|+.+
T Consensus 47 ~iIlsgGPg~~~--d~~~~~~li~~~~-~~~PiLGIClG~Qlla~a 89 (208)
T PRK05637 47 LICLSPGPGHPR--DAGNMMALIDRTL-GQIPLLGICLGFQALLEH 89 (208)
T ss_pred EEEEeCCCCCHH--HhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHH
Confidence 999988887421 2223456665543 579999999999999987
No 84
>PRK13566 anthranilate synthase; Provisional
Probab=97.71 E-value=0.00024 Score=65.58 Aligned_cols=90 Identities=16% Similarity=0.111 Sum_probs=67.1
Q ss_pred CCCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 7 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 7 ~~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
.++||+||=+.. .-...+.+.|+..|.++.++..+.. ...++ ..++
T Consensus 525 ~g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~----------------------------~~~~~---~~~~ 570 (720)
T PRK13566 525 EGKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFA----------------------------EEMLD---RVNP 570 (720)
T ss_pred CCCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCC----------------------------hhHhh---hcCC
Confidence 367887777653 3467888999999999998876531 01111 1369
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|.|||.||.+.. .+..+.++|++..++++||.+||-|.++|+.+
T Consensus 571 DgVVLsgGpgsp---~d~~~~~lI~~a~~~~iPILGIClG~QlLa~a 614 (720)
T PRK13566 571 DLVVLSPGPGRP---SDFDCKATIDAALARNLPIFGVCLGLQAIVEA 614 (720)
T ss_pred CEEEECCCCCCh---hhCCcHHHHHHHHHCCCcEEEEehhHHHHHHH
Confidence 999998887642 22347899999999999999999999999987
No 85
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=97.71 E-value=6.2e-05 Score=58.27 Aligned_cols=79 Identities=29% Similarity=0.514 Sum_probs=59.4
Q ss_pred hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCC
Q 027785 24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMN 103 (219)
Q Consensus 24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~ 103 (219)
...+...|++.|.+++++...... ....+ +..+||.++|+||.+... +.
T Consensus 10 ~~~l~~~l~~~~~~~~v~~~~~~~---------------------------~~~~~--~~~~~d~iii~Gg~~~~~--d~ 58 (192)
T PF00117_consen 10 THSLVRALRELGIDVEVVRVDSDF---------------------------EEPLE--DLDDYDGIIISGGPGSPY--DI 58 (192)
T ss_dssp HHHHHHHHHHTTEEEEEEETTGGH---------------------------HHHHH--HTTTSSEEEEECESSSTT--SH
T ss_pred HHHHHHHHHHCCCeEEEEECCCch---------------------------hhhhh--hhcCCCEEEECCcCCccc--cc
Confidence 356778888999888888654310 00011 235899999999987432 25
Q ss_pred hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 104 DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 104 ~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+...++++++.++++|+.+||.|.++|+.+
T Consensus 59 ~~~~~~i~~~~~~~~PilGIC~G~Q~la~~ 88 (192)
T PF00117_consen 59 EGLIELIREARERKIPILGICLGHQILAHA 88 (192)
T ss_dssp HHHHHHHHHHHHTTSEEEEETHHHHHHHHH
T ss_pred cccccccccccccceEEEEEeehhhhhHHh
Confidence 788999999999999999999999999986
No 86
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.68 E-value=0.00013 Score=56.58 Aligned_cols=50 Identities=30% Similarity=0.480 Sum_probs=38.8
Q ss_pred CCccEEEEcCCCCccc---------------ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAPEY---------------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~~~---------------~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
..+|.||+|||.+... ..++....++++++.+.++||.+||.|.++|+.+
T Consensus 52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~ 116 (189)
T cd01745 52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVA 116 (189)
T ss_pred hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHH
Confidence 3699999999974210 1112345889999999999999999999999976
No 87
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=97.64 E-value=0.00038 Score=59.52 Aligned_cols=87 Identities=21% Similarity=0.310 Sum_probs=61.4
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
+||+++=+ |+. ..+...|++.|.++.++..+. +.+++...++|.
T Consensus 193 ~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~~dg 236 (382)
T CHL00197 193 LKIIVIDF-GVK----YNILRRLKSFGCSITVVPATS-------------------------------PYQDILSYQPDG 236 (382)
T ss_pred CEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCC-------------------------------CHHHHhccCCCE
Confidence 56666655 444 447888888999888874331 112222236999
Q ss_pred EEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|++.||++.. ......++.++++.+.+.||.+||.|-++|+.+
T Consensus 237 IilSgGPg~p--~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a 279 (382)
T CHL00197 237 ILLSNGPGDP--SAIHYGIKTVKKLLKYNIPIFGICMGHQILSLA 279 (382)
T ss_pred EEEcCCCCCh--hHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHH
Confidence 9999998732 123456777888877789999999999999976
No 88
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=97.63 E-value=0.00032 Score=54.05 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785 25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND 104 (219)
Q Consensus 25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~ 104 (219)
......|++.|.++.++..+... ..+.+ ...+|.||+.||.+... +.
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~----------------------------~~~~~--~~~~dgvil~gG~~~~~--~~- 58 (184)
T cd01743 12 YNLVQYLRELGAEVVVVRNDEIT----------------------------LEELE--LLNPDAIVISPGPGHPE--DA- 58 (184)
T ss_pred HHHHHHHHHcCCceEEEeCCCCC----------------------------HHHHh--hcCCCEEEECCCCCCcc--cc-
Confidence 45667888899999888775421 00112 24699999988876321 12
Q ss_pred HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 105 SVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.....+++...+++|+.+||-|.++|+.+
T Consensus 59 ~~~~~i~~~~~~~~PvlGIC~G~Qlla~~ 87 (184)
T cd01743 59 GISLEIIRALAGKVPILGVCLGHQAIAEA 87 (184)
T ss_pred hhHHHHHHHHhcCCCEEEECHhHHHHHHH
Confidence 24555556667889999999999999987
No 89
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=97.61 E-value=0.00025 Score=55.14 Aligned_cols=86 Identities=17% Similarity=0.274 Sum_probs=56.6
Q ss_pred EEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEc
Q 027785 13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIP 92 (219)
Q Consensus 13 il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liip 92 (219)
|++-|.++... ....+.|++.|+.+.++..+... + ..+.+ .++|.+++-
T Consensus 2 il~id~~dsft-~~~~~~l~~~g~~~~~~~~~~~~------------------------~---~~~~~---~~~~~iils 50 (193)
T PRK08857 2 LLMIDNYDSFT-YNLYQYFCELGAQVKVVRNDEID------------------------I---DGIEA---LNPTHLVIS 50 (193)
T ss_pred EEEEECCCCcH-HHHHHHHHHCCCcEEEEECCCCC------------------------H---HHHhh---CCCCEEEEe
Confidence 34444444222 34788899999999888655210 0 01222 258999999
Q ss_pred CCCC-cccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 93 GGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 93 GG~~-~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
||++ +. +......+++. .+++.||.+||-|.++|+.+
T Consensus 51 gGp~~~~---~~~~~~~~i~~-~~~~~PiLGIClG~Qlia~a 88 (193)
T PRK08857 51 PGPCTPN---EAGISLQAIEH-FAGKLPILGVCLGHQAIAQV 88 (193)
T ss_pred CCCCChH---HCcchHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 9875 32 23334567765 57899999999999999986
No 90
>CHL00101 trpG anthranilate synthase component 2
Probab=97.61 E-value=0.0002 Score=55.56 Aligned_cols=76 Identities=13% Similarity=0.067 Sum_probs=51.3
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785 25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND 104 (219)
Q Consensus 25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~ 104 (219)
..+.+.|+..|.++.++..+.. .+.++....+|.|||.||++... +..
T Consensus 13 ~~l~~~l~~~g~~~~v~~~~~~------------------------------~~~~~~~~~~dgiiisgGpg~~~--~~~ 60 (190)
T CHL00101 13 YNLVQSLGELNSDVLVCRNDEI------------------------------DLSKIKNLNIRHIIISPGPGHPR--DSG 60 (190)
T ss_pred HHHHHHHHhcCCCEEEEECCCC------------------------------CHHHHhhCCCCEEEECCCCCChH--HCc
Confidence 5577888888988877654421 11122223699999999986321 122
Q ss_pred HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 105 SVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+...+.+.++.++|+.+||-|.++|+.+
T Consensus 61 -~~~~i~~~~~~~~PiLGIClG~Qlla~~ 88 (190)
T CHL00101 61 -ISLDVISSYAPYIPILGVCLGHQSIGYL 88 (190)
T ss_pred -chHHHHHHhcCCCcEEEEchhHHHHHHH
Confidence 2333444577899999999999999986
No 91
>PLN02335 anthranilate synthase
Probab=97.60 E-value=0.00036 Score=55.48 Aligned_cols=89 Identities=16% Similarity=0.230 Sum_probs=58.7
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
.+||+|+ | +.+.--..+.+.|++.|.++.++..+.. .++++....+|
T Consensus 18 ~~~ilvi--D-~~dsft~~i~~~L~~~g~~~~v~~~~~~------------------------------~~~~~~~~~~d 64 (222)
T PLN02335 18 NGPIIVI--D-NYDSFTYNLCQYMGELGCHFEVYRNDEL------------------------------TVEELKRKNPR 64 (222)
T ss_pred cCcEEEE--E-CCCCHHHHHHHHHHHCCCcEEEEECCCC------------------------------CHHHHHhcCCC
Confidence 4577777 3 2222346688889999999999855321 11111123689
Q ss_pred EEEEcCCCC-cccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 88 GLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 88 ~liipGG~~-~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.|||.||++ +.. .....+++++ ....+||.+||.|.++|+.+
T Consensus 65 ~iVisgGPg~p~d---~~~~~~~~~~-~~~~~PiLGIClG~QlLa~a 107 (222)
T PLN02335 65 GVLISPGPGTPQD---SGISLQTVLE-LGPLVPLFGVCMGLQCIGEA 107 (222)
T ss_pred EEEEcCCCCChhh---ccchHHHHHH-hCCCCCEEEecHHHHHHHHH
Confidence 999999987 432 1233555654 45679999999999999975
No 92
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.57 E-value=0.00029 Score=55.14 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=34.6
Q ss_pred CccEEEEcCCCCccc----ccCChHHHHHHHHH-HhcCCeEEEEehhHHHHHhC
Q 027785 85 KYDGLVIPGGRAPEY----LAMNDSVIDLVRKF-SNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 85 ~~D~liipGG~~~~~----~~~~~~l~~~l~~~-~~~~~~v~~ic~G~~~La~a 133 (219)
.+|.||+||+..+.. +... .+...|+++ +++++||.+||.|.++|+.+
T Consensus 37 ~~d~lilPG~g~~~~~~~~l~~~-~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~ 89 (201)
T PRK13152 37 KADKLLLPGVGSFKEAMKNLKEL-GFIEALKEQVLVQKKPILGICLGMQLFLER 89 (201)
T ss_pred CCCEEEECCCCchHHHHHHHHHc-CcHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence 589999999865322 1112 234555554 58899999999999999987
No 93
>PRK00758 GMP synthase subunit A; Validated
Probab=97.57 E-value=0.00031 Score=54.12 Aligned_cols=43 Identities=28% Similarity=0.568 Sum_probs=33.1
Q ss_pred Cc-cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 85 KY-DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 85 ~~-D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
++ |.|+++||.... ....+.+|++ +.++||.+||.|.++|+.+
T Consensus 40 ~~~dgivi~Gg~~~~---~~~~~~~~l~---~~~~PilGIC~G~Q~L~~a 83 (184)
T PRK00758 40 AFEDGLILSGGPDIE---RAGNCPEYLK---ELDVPILGICLGHQLIAKA 83 (184)
T ss_pred hcCCEEEECCCCChh---hccccHHHHH---hCCCCEEEEeHHHHHHHHh
Confidence 45 999999987422 2334666776 4589999999999999987
No 94
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=97.56 E-value=0.00053 Score=63.22 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=64.9
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
.+||+|+=+. +.....+.+.|+..|+++.++..... ...++ ..++|
T Consensus 516 ~~~IlVID~g---ds~~~~l~~~L~~~G~~v~vv~~~~~----------------------------~~~~~---~~~~D 561 (717)
T TIGR01815 516 GRRILLVDHE---DSFVHTLANYLRQTGASVTTLRHSHA----------------------------EAAFD---ERRPD 561 (717)
T ss_pred CCEEEEEECC---ChhHHHHHHHHHHCCCeEEEEECCCC----------------------------hhhhh---hcCCC
Confidence 5688888654 33467888999999999988754321 00011 23699
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.|||.||.+.. .+....++|++..++++||.+||.|.++|+.+
T Consensus 562 gLILsgGPGsp---~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a 604 (717)
T TIGR01815 562 LVVLSPGPGRP---ADFDVAGTIDAALARGLPVFGVCLGLQGMVEA 604 (717)
T ss_pred EEEEcCCCCCc---hhcccHHHHHHHHHCCCCEEEECHHHHHHhhh
Confidence 99998887642 12345788899999999999999999999987
No 95
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=97.52 E-value=0.00035 Score=54.39 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=51.9
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785 25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND 104 (219)
Q Consensus 25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~ 104 (219)
..+.+.|++.|.++.++..+.. .++++...+||.||+.||++... +..
T Consensus 13 ~nl~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iIlsgGP~~p~--~~~ 60 (195)
T PRK07649 13 FNLVQFLGELGQELVVKRNDEV------------------------------TISDIENMKPDFLMISPGPCSPN--EAG 60 (195)
T ss_pred HHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHhhCCCCEEEECCCCCChH--hCC
Confidence 3478889999999988865421 01111123689999999986321 122
Q ss_pred HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 105 SVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.....++. ++.++|+.+||-|.++|+.+
T Consensus 61 ~~~~~i~~-~~~~~PvLGIClG~Qlla~~ 88 (195)
T PRK07649 61 ISMEVIRY-FAGKIPIFGVCLGHQSIAQV 88 (195)
T ss_pred CchHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 34555554 45789999999999999986
No 96
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.50 E-value=0.00061 Score=58.44 Aligned_cols=91 Identities=21% Similarity=0.301 Sum_probs=71.8
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
.||+|..-.-|+. =+-.-++.|+.+|.++.++||-.+. ++ +++.|+
T Consensus 246 ~rIAVA~D~AF~F-yY~~nl~~Lr~~GAelv~FSPL~D~--------------------------------~l-P~~~D~ 291 (451)
T COG1797 246 VRIAVARDAAFNF-YYPENLELLREAGAELVFFSPLADE--------------------------------EL-PPDVDA 291 (451)
T ss_pred ceEEEEecchhcc-ccHHHHHHHHHCCCEEEEeCCcCCC--------------------------------CC-CCCCCE
Confidence 5888876554442 3445678899999999999985421 11 236999
Q ss_pred EEEcCCCC---cccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~---~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|+||||.- +..+..++.+.+.|+++++.|++|.+=|.|-..|.++
T Consensus 292 vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~ 339 (451)
T COG1797 292 VYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGES 339 (451)
T ss_pred EEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhh
Confidence 99999963 3457889999999999999999999999999999876
No 97
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.50 E-value=0.00024 Score=50.18 Aligned_cols=87 Identities=21% Similarity=0.282 Sum_probs=55.7
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL 89 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 89 (219)
+|+|..-+|.+..-+......|+..- .++.++.+. | .+..++ ..+|.|
T Consensus 1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~--------------------------I-~~~~~~----~~ad~l 48 (114)
T cd03144 1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE--------------------------L-AVGPWE----SKTALL 48 (114)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH--------------------------H-hcCchh----hCCCEE
Confidence 36677777877777777777776533 333333221 0 011122 379999
Q ss_pred EEcCCCCc---ccccCChHHHHHHHHHHhcCCeEEEEehhHHHH
Q 027785 90 VIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130 (219)
Q Consensus 90 iipGG~~~---~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~L 130 (219)
|+|||... ..+.. .. .+.|+++.++++++.+||.|+.+.
T Consensus 49 VlPGGa~~~~~~~L~~-~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 49 VVPGGADLPYCRALNG-KG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred EECCCChHHHHHHHHh-hC-cHHHHHHHHCCCcEEEEecCccce
Confidence 99997532 22322 23 788888889999999999999765
No 98
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=97.49 E-value=0.00051 Score=58.30 Aligned_cols=85 Identities=24% Similarity=0.312 Sum_probs=59.0
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL 89 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 89 (219)
||+++=+ |+. ......|.+.|.++.++..+. +++++....+|.|
T Consensus 175 ~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~pDGI 218 (358)
T TIGR01368 175 RVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDT-------------------------------DAEEIKKYNPDGI 218 (358)
T ss_pred EEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCC-------------------------------CHHHHHhhCCCEE
Confidence 5555543 433 457778888898887774321 1222221246999
Q ss_pred EEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
||+||++.. ...+..+++++++.+ ++||.+||.|.++|+.+
T Consensus 219 iLSgGPgdp--~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a 259 (358)
T TIGR01368 219 FLSNGPGDP--AAVEPAIETIRKLLE-KIPIFGICLGHQLLALA 259 (358)
T ss_pred EECCCCCCH--HHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHH
Confidence 999998632 234667888998887 99999999999999976
No 99
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=97.49 E-value=0.00043 Score=58.66 Aligned_cols=75 Identities=23% Similarity=0.321 Sum_probs=53.6
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785 25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND 104 (219)
Q Consensus 25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~ 104 (219)
....+.|.+.|..+.++..+.. .+++....+|.||++||++.. .+..
T Consensus 179 ~ni~~~L~~~G~~v~vvp~~~~-------------------------------~~~i~~~~~DGIiLsgGPgdp--~~~~ 225 (354)
T PRK12838 179 KSILRSLSKRGCKVTVLPYDTS-------------------------------LEEIKNLNPDGIVLSNGPGDP--KELQ 225 (354)
T ss_pred HHHHHHHHHCCCeEEEEECCCC-------------------------------HHHHhhcCCCEEEEcCCCCCh--HHhH
Confidence 5567777788888877744321 112212369999999998631 2345
Q ss_pred HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 105 SVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
...++++++.++ +|+.+||.|.++|+.+
T Consensus 226 ~~~~~i~~~~~~-~PvlGIClG~QlLa~a 253 (354)
T PRK12838 226 PYLPEIKKLISS-YPILGICLGHQLIALA 253 (354)
T ss_pred HHHHHHHHHhcC-CCEEEECHHHHHHHHH
Confidence 677888888877 9999999999999976
No 100
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.48 E-value=0.00035 Score=60.75 Aligned_cols=48 Identities=27% Similarity=0.495 Sum_probs=39.3
Q ss_pred CccEEEEcCCCCc---ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 85 KYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 85 ~~D~liipGG~~~---~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
++|+|++|||... ..+..+... +-|+++.++|++|.++|.|-++|++.
T Consensus 274 ~~D~l~lpGG~~e~~~~~L~~n~~~-~~i~~~~~~G~pi~aeCGG~q~L~~~ 324 (433)
T PRK13896 274 DCDGVYLPGGYPELHADALADSPAL-DELADRAADGLPVLGECGGLMALAES 324 (433)
T ss_pred CCCEEEeCCCchhhHHHHHHhCCcH-HHHHHHHHCCCcEEEEehHHHHhhcc
Confidence 7899999999742 224444445 88999999999999999999999985
No 101
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.47 E-value=0.0003 Score=54.51 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=55.4
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV 90 (219)
Q Consensus 11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li 90 (219)
|+|+=|..- .+......|++.|.++.++... +++ .++|.||
T Consensus 2 i~iidyg~g---N~~s~~~al~~~g~~~~~v~~~----------------------------------~~l--~~~D~lI 42 (192)
T PRK13142 2 IVIVDYGLG---NISNVKRAIEHLGYEVVVSNTS----------------------------------KII--DQAETII 42 (192)
T ss_pred EEEEEcCCc---cHHHHHHHHHHcCCCEEEEeCH----------------------------------HHh--ccCCEEE
Confidence 677766544 4456667777788877776422 112 3689999
Q ss_pred EcCCCCccc---ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 91 IPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 91 ipGG~~~~~---~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+||+..... ..+...+.+.|++ ..++|+.+||.|-++|++.
T Consensus 43 lPG~g~~~~~~~~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~ 86 (192)
T PRK13142 43 LPGVGHFKDAMSEIKRLNLNAILAK--NTDKKMIGICLGMQLMYEH 86 (192)
T ss_pred ECCCCCHHHHHHHHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhh
Confidence 999854221 1112236777777 5689999999999999976
No 102
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.43 E-value=0.00053 Score=54.04 Aligned_cols=48 Identities=27% Similarity=0.450 Sum_probs=38.8
Q ss_pred CccEEEEcCCCCcc----cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 85 KYDGLVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 85 ~~D~liipGG~~~~----~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
++|.||+||+.... .+. ...+.++|+++.++++|+.+||.|.++|+++
T Consensus 37 ~~d~iIlPG~g~~~~~~~~l~-~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~ 88 (210)
T PRK14004 37 NSKALILPGDGHFDKAMENLN-STGLRSTIDKHVESGKPLFGICIGFQILFES 88 (210)
T ss_pred cCCEEEECCCCchHHHHHHHH-HcCcHHHHHHHHHcCCCEEEECHhHHHHHHh
Confidence 78999999986421 122 2358889999999999999999999999985
No 103
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.33 E-value=0.00068 Score=53.49 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=39.0
Q ss_pred CCccEEEEcCCCCc---ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~---~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
..+|+|++|||.-. ..+. ...+.+.|++.+++|++++++|.|+.++...
T Consensus 79 ~~ad~I~l~GG~~~~~~~~l~-~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 79 LEADVIYVGGGNTFNLLAQWR-EHGLDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred hcCCEEEECCchHHHHHHHHH-HcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 47999999998532 1222 2357888999899999999999999999984
No 104
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.22 E-value=0.00087 Score=59.01 Aligned_cols=45 Identities=36% Similarity=0.597 Sum_probs=34.0
Q ss_pred CCccEEEEcCCCCc--ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~--~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.++|+||+|||.-. ..+ ...+.+.|+++ |+||.+||.|-++|++.
T Consensus 35 ~~~D~lILPGG~~~~~~~l--~~~l~~~i~~~---g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 35 KDLDGLIIPGGSLVESGSL--TDELKKEILNF---DGYIIGICSGFQILSEK 81 (476)
T ss_pred ccCCEEEECCCchhhcchH--HHHHHHHHHHc---CCeEEEEcHHHHhcccc
Confidence 47999999998421 111 24566666666 99999999999999987
No 105
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.20 E-value=0.0024 Score=49.00 Aligned_cols=86 Identities=22% Similarity=0.354 Sum_probs=61.4
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785 25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND 104 (219)
Q Consensus 25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~ 104 (219)
..+++.|+..|.++.++..+.- +...++..++|+|+|..|+|... +..
T Consensus 15 yNLv~yl~~lg~~v~V~rnd~~------------------------------~~~~~~~~~pd~iviSPGPG~P~--d~G 62 (191)
T COG0512 15 YNLVQYLRELGAEVTVVRNDDI------------------------------SLELIEALKPDAIVISPGPGTPK--DAG 62 (191)
T ss_pred HHHHHHHHHcCCceEEEECCcc------------------------------CHHHHhhcCCCEEEEcCCCCChH--Hcc
Confidence 5678889998988888765521 11122334689999988887432 455
Q ss_pred HHHHHHHHHHhcCCeEEEEehhHHHHHhC---------cccCCceEee
Q 027785 105 SVIDLVRKFSNSGKTIASICHGQLILAAA---------DVVKGRKCTA 143 (219)
Q Consensus 105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a---------GlL~g~~~t~ 143 (219)
...+.|+++ ....||.+||.|-+.|+.+ ....||.-..
T Consensus 63 ~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HGK~s~i 109 (191)
T COG0512 63 ISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSII 109 (191)
T ss_pred hHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCCCcCCeeeee
Confidence 688888888 7778999999999999987 2566665533
No 106
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.14 E-value=0.0017 Score=51.88 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=40.1
Q ss_pred CCccEEEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc
Q 027785 84 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (219)
Q Consensus 84 ~~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG 134 (219)
...|+|+|+||.... .......+.+.|++.+++|+++++.|+|+.+++...
T Consensus 78 ~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 78 ENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTI 130 (233)
T ss_pred hcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence 478999999997532 122344688889999999999999999999888653
No 107
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.13 E-value=0.0013 Score=58.09 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=40.3
Q ss_pred CCccEEEEcCCCCcc---cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785 84 TKYDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (219)
Q Consensus 84 ~~~D~liipGG~~~~---~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~ 132 (219)
+++|+|++|||.... ....+..+.+.|+++.++|++|.++|.|-++|++
T Consensus 283 ~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~ 334 (475)
T TIGR00313 283 TGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGK 334 (475)
T ss_pred ccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhh
Confidence 478999999997421 1224556889999999999999999999999998
No 108
>PLN02347 GMP synthetase
Probab=97.11 E-value=0.0027 Score=56.80 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=56.2
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL 89 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 89 (219)
+|+|+=+-. .-...+...+++.|..+.++..+.. .+++....+|.|
T Consensus 12 ~IlIID~G~---~~t~~I~r~lrelgv~~~v~p~~~~-------------------------------~~~i~~~~~dgI 57 (536)
T PLN02347 12 VVLILDYGS---QYTHLITRRVRELGVYSLLLSGTAS-------------------------------LDRIASLNPRVV 57 (536)
T ss_pred EEEEEECCC---cHHHHHHHHHHHCCCeEEEEECCCC-------------------------------HHHHhcCCCCEE
Confidence 566654432 2235567788888988777644321 222222368999
Q ss_pred EEcCCCCcccccCChHHH-HHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 90 VIPGGRAPEYLAMNDSVI-DLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 90 iipGG~~~~~~~~~~~l~-~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|++||++.......+.+. .+++...+.+.||.+||.|.++|+.+
T Consensus 58 ILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~a 102 (536)
T PLN02347 58 ILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQK 102 (536)
T ss_pred EECCCCCcccccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHH
Confidence 999997532222223222 33344445789999999999999987
No 109
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=96.93 E-value=0.0053 Score=52.23 Aligned_cols=93 Identities=22% Similarity=0.331 Sum_probs=66.5
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhC---CCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAF---GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 85 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~a---g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 85 (219)
++|+|.--+|.....+...+..|+.. .|.|..++.+. |. ...+. ..
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~--------------------------l~-~~pw~----~~ 49 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE--------------------------LL-NEPWQ----SK 49 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH--------------------------hh-cCccc----cC
Confidence 37899999999998998999989853 46666664321 11 11122 36
Q ss_pred ccEEEEcCCCCcccc-cCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785 86 YDGLVIPGGRAPEYL-AMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (219)
Q Consensus 86 ~D~liipGG~~~~~~-~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~ 132 (219)
++++|+|||..-... .-++.-.+.||++.++|..-.++|+|+.+-.+
T Consensus 50 ~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 50 CALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYASS 97 (367)
T ss_pred CcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence 899999999753221 22456688899999999999999999977664
No 110
>PRK00074 guaA GMP synthase; Reviewed
Probab=96.93 E-value=0.0052 Score=54.85 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=56.7
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
.+|+||=+ |.+ -...+...+++.|...+++..+.. .++++..++|.
T Consensus 4 ~~i~vlD~-Gsq--~~~li~r~lrelg~~~~v~p~~~~-------------------------------~~~l~~~~~dg 49 (511)
T PRK00074 4 DKILILDF-GSQ--YTQLIARRVRELGVYSEIVPYDIS-------------------------------AEEIRAFNPKG 49 (511)
T ss_pred CEEEEEEC-CCC--cHHHHHHHHHHCCCeEEEEECCCC-------------------------------HHHHhccCCCE
Confidence 46887766 333 345567888899987777743321 11222125799
Q ss_pred EEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
||++||...-.-...+.+. +...+.++||.+||.|.++|+.+
T Consensus 50 IIlsGGp~sv~~~~~p~~~---~~i~~~~~PvLGIC~G~QlLa~~ 91 (511)
T PRK00074 50 IILSGGPASVYEEGAPRAD---PEIFELGVPVLGICYGMQLMAHQ 91 (511)
T ss_pred EEECCCCcccccCCCcccc---HHHHhCCCCEEEECHHHHHHHHH
Confidence 9999997532111223332 44566799999999999999986
No 111
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=96.91 E-value=0.0021 Score=51.52 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=38.7
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
..+|.|+++||.+... .+....+++...+.++|+.+||.|.++|+.+
T Consensus 54 ~~~dgivl~GG~~~~~---~~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~ 100 (235)
T cd01746 54 KGADGILVPGGFGIRG---VEGKILAIKYARENNIPFLGICLGMQLAVIE 100 (235)
T ss_pred ccCCEEEECCCCCCcc---hhhHHHHHHHHHHCCceEEEEEhHHHHHHHH
Confidence 4799999999986432 3466788999999999999999999988654
No 112
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=96.84 E-value=0.0046 Score=53.34 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785 25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND 104 (219)
Q Consensus 25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~ 104 (219)
..++..|++.|.++.++..+. +.+++...++|.||+.||+|.. ...+
T Consensus 252 ~nIlr~L~~~G~~v~VvP~~~-------------------------------~~~ei~~~~pDGIiLSnGPGDP--~~~~ 298 (415)
T PLN02771 252 HNILRRLASYGCKITVVPSTW-------------------------------PASEALKMKPDGVLFSNGPGDP--SAVP 298 (415)
T ss_pred HHHHHHHHHcCCeEEEECCCC-------------------------------CHHHHhhcCCCEEEEcCCCCCh--hHhh
Confidence 566677777788777774432 1122222369999999998632 2345
Q ss_pred HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 105 SVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
...+.+++.. .++||.+||.|.++|+.+
T Consensus 299 ~~ie~ik~l~-~~iPIlGICLGhQlLa~A 326 (415)
T PLN02771 299 YAVETVKELL-GKVPVFGICMGHQLLGQA 326 (415)
T ss_pred HHHHHHHHHH-hCCCEEEEcHHHHHHHHh
Confidence 6777777766 478999999999999977
No 113
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=96.77 E-value=0.0052 Score=55.03 Aligned_cols=78 Identities=13% Similarity=0.048 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCc-ccccCC
Q 027785 25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EYLAMN 103 (219)
Q Consensus 25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~-~~~~~~ 103 (219)
..+.+.|+..|.++.+++.+.. .+..++++...++|.|||-||++. ......
T Consensus 15 ~nl~~~lr~~g~~v~V~~~~~~---------------------------~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~ 67 (531)
T PRK09522 15 YNLADQLRSNGHNVVIYRNHIP---------------------------AQTLIERLATMSNPVLMLSPGPGVPSEAGCM 67 (531)
T ss_pred HHHHHHHHHCCCCEEEEECCCC---------------------------CccCHHHHHhcCcCEEEEcCCCCChhhCCCC
Confidence 5578888999998888875421 011122222235889999999873 322222
Q ss_pred hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 104 DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 104 ~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+ ++.+....++||.+||.|.++|+.+
T Consensus 68 ~----~i~~~~~~~iPILGIClG~QlLa~a 93 (531)
T PRK09522 68 P----ELLTRLRGKLPIIGICLGHQAIVEA 93 (531)
T ss_pred H----HHHHHHhcCCCEEEEcHHHHHHHHh
Confidence 2 3333345689999999999999987
No 114
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=96.70 E-value=0.0033 Score=46.98 Aligned_cols=50 Identities=26% Similarity=0.482 Sum_probs=38.9
Q ss_pred CCCccEEEEcCCCCc--ccccCChHHHHHHHHHHhcC-CeEEEEehhHHHHHh
Q 027785 83 PTKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAA 132 (219)
Q Consensus 83 ~~~~D~liipGG~~~--~~~~~~~~l~~~l~~~~~~~-~~v~~ic~G~~~La~ 132 (219)
..+.|+||||||... ..+..-..+.+-|.++..++ +++-+.|+|..+|.+
T Consensus 54 ~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ 106 (226)
T KOG3210|consen 54 LAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQ 106 (226)
T ss_pred HhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhh
Confidence 358999999999763 22333344888888888877 999999999998875
No 115
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=96.58 E-value=0.0037 Score=50.74 Aligned_cols=49 Identities=24% Similarity=0.340 Sum_probs=38.4
Q ss_pred CccEEEEcCCC-Ccc--------c-----ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 85 KYDGLVIPGGR-APE--------Y-----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 85 ~~D~liipGG~-~~~--------~-----~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.+|.|+++||. ... . ..++....++|+.+.++++||.+||-|.++|+.+
T Consensus 61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva 123 (254)
T PRK11366 61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVA 123 (254)
T ss_pred hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence 59999999984 221 0 1122456899999999999999999999999977
No 116
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=96.48 E-value=0.008 Score=54.01 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=35.8
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
..+|.||+.||++... +.....++++. ...+.||.+||-|.++|+.+
T Consensus 43 ~~~d~vIlsgGP~~p~--~~~~~~~li~~-~~~~~PvLGIClG~QlLa~a 89 (534)
T PRK14607 43 LNPSHIVISPGPGRPE--EAGISVEVIRH-FSGKVPILGVCLGHQAIGYA 89 (534)
T ss_pred cCCCEEEECCCCCChh--hCCccHHHHHH-hhcCCCEEEEcHHHHHHHHH
Confidence 3689999999987321 22334667776 46789999999999999986
No 117
>PRK06186 hypothetical protein; Validated
Probab=96.46 E-value=0.0052 Score=48.88 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=39.9
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHH--HHhC
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI--LAAA 133 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~--La~a 133 (219)
..++|.|+||||+|.+ .-+--+..++.+.+++.|+.+||-|.++ +..+
T Consensus 51 l~~~dgilvpgGfg~r---g~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~a 100 (229)
T PRK06186 51 LAGFDGIWCVPGSPYR---NDDGALTAIRFARENGIPFLGTCGGFQHALLEYA 100 (229)
T ss_pred HhhCCeeEeCCCCCcc---cHhHHHHHHHHHHHcCCCeEeechhhHHHHHHHH
Confidence 3579999999999853 4567788899999999999999999984 5544
No 118
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=96.33 E-value=0.028 Score=46.67 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=38.2
Q ss_pred CccCCCCCCccEEEEcCCCCc-ccccC---ChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 77 TFDEIDPTKYDGLVIPGGRAP-EYLAM---NDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 77 ~~~~~~~~~~D~liipGG~~~-~~~~~---~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+++++....||.+||.|..-. ....+ -+++.+++....++.+++.+||-|+++++.+
T Consensus 91 ~~~~i~~~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~a 151 (302)
T PRK05368 91 TFEDIKDEKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYH 151 (302)
T ss_pred CHHHhccCCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence 455665578999999998632 11111 1234444444445689999999999998865
No 119
>PRK05380 pyrG CTP synthetase; Validated
Probab=96.32 E-value=0.007 Score=53.73 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=38.5
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~ 132 (219)
..+|.|++|||+|... .+..+.+++.+.++++|+.+||.|.++++-
T Consensus 342 ~~~DGIIlpGGfG~~~---~~g~i~~i~~a~e~~iPiLGIClGmQll~v 387 (533)
T PRK05380 342 KGVDGILVPGGFGERG---IEGKILAIRYARENNIPFLGICLGMQLAVI 387 (533)
T ss_pred hcCCEEEecCCCCccc---cccHHHHHHHHHHCCCcEEEEchHHHHHHH
Confidence 5799999999987532 345678899999999999999999987775
No 120
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=95.99 E-value=0.02 Score=46.99 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=32.0
Q ss_pred CCccEEEEcCCCC-cccccCChHHHHHHHHHH---hcC--CeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFS---NSG--KTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~-~~~~~~~~~l~~~l~~~~---~~~--~~v~~ic~G~~~La~a 133 (219)
..+|.|++|||.. .......+....+++... ++| .||.++|.|..+|+.+
T Consensus 53 ~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~ 108 (273)
T cd01747 53 KSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTYL 108 (273)
T ss_pred hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHH
Confidence 4689999999863 221112233334444444 444 7999999999988873
No 121
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=95.89 E-value=0.066 Score=50.03 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=34.0
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhc----CCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS----GKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~----~~~v~~ic~G~~~La~a 133 (219)
..||.|||.||+|... ++.-..++++..+. ..||.+||.|.++|+.+
T Consensus 52 ~~~D~VVIspGPG~p~---~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a 102 (742)
T TIGR01823 52 PLFDAIVVGPGPGNPN---NAQDMGIISELWELANLDEVPVLGICLGFQSLCLA 102 (742)
T ss_pred cCCCEEEECCCCCCcc---chhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhh
Confidence 4799999999987421 22334455555543 49999999999999987
No 122
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=95.87 E-value=0.027 Score=47.25 Aligned_cols=55 Identities=27% Similarity=0.415 Sum_probs=44.1
Q ss_pred CccCCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 77 TFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 77 ~~~~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+.+++-.-++|.||+.-|+|-. ..-+..++.|++..+..+|+.+||.|-++||-|
T Consensus 212 ~~eeIl~~~pDGiflSNGPGDP--~~~~~~i~~ik~l~~~~iPifGICLGHQllalA 266 (368)
T COG0505 212 SAEEILALNPDGIFLSNGPGDP--APLDYAIETIKELLGTKIPIFGICLGHQLLALA 266 (368)
T ss_pred CHHHHHhhCCCEEEEeCCCCCh--hHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHh
Confidence 3444333579999999988732 345778999999999999999999999999976
No 123
>PLN02327 CTP synthase
Probab=95.67 E-value=0.021 Score=50.95 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=37.3
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
..++|.|++|||+|... ....+..++.+.++++|+.+||.|.++++-.
T Consensus 360 L~~~DGIvvpGGfG~~~---~~G~i~ai~~are~~iP~LGIClGmQl~vie 407 (557)
T PLN02327 360 LKGADGILVPGGFGDRG---VEGKILAAKYARENKVPYLGICLGMQIAVIE 407 (557)
T ss_pred hccCCEEEeCCCCCCcc---cccHHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence 35899999999987532 2344667787888999999999999877643
No 124
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=95.63 E-value=0.026 Score=44.93 Aligned_cols=50 Identities=30% Similarity=0.507 Sum_probs=39.8
Q ss_pred CCccEEEEcCCCC--cc-------------cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRA--PE-------------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~--~~-------------~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+..|.|+++||.. +. +..++..-+..|+++.++++||.+||=|.++|.-+
T Consensus 59 ~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa 123 (243)
T COG2071 59 DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVA 123 (243)
T ss_pred hhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHH
Confidence 4689999999932 21 12345567899999999999999999999999855
No 125
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=95.45 E-value=0.026 Score=50.15 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=36.9
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.++|.|++|||++... .+..+..++.+.+++.|+.+||.|.++++.+
T Consensus 342 ~~~dGIiLpGG~G~~~---~~g~i~ai~~a~e~~iP~LGIClG~Qll~i~ 388 (525)
T TIGR00337 342 KGVDGILVPGGFGERG---VEGKILAIKYARENNIPFLGICLGMQLAVIE 388 (525)
T ss_pred cCCCEEEeCCCCCChh---hcChHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence 4699999999987532 3445567787888999999999999877643
No 126
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=95.31 E-value=0.12 Score=40.00 Aligned_cols=50 Identities=32% Similarity=0.594 Sum_probs=38.6
Q ss_pred CCCccEEEEcCCCCcccccCC---hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 83 PTKYDGLVIPGGRAPEYLAMN---DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~---~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.+.||.++|.|...... .+. -.|..++++.....+.|++||-|-+++|++
T Consensus 57 l~ky~gfvIsGS~~dAf-~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara 109 (245)
T KOG3179|consen 57 LEKYDGFVISGSKHDAF-SDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARA 109 (245)
T ss_pred hhhhceEEEeCCccccc-ccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHh
Confidence 35799999999764221 222 357778888888889999999999999987
No 127
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=95.18 E-value=0.073 Score=46.71 Aligned_cols=50 Identities=18% Similarity=0.411 Sum_probs=34.8
Q ss_pred CCccEEEEcCCCCc-ccc--cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAP-EYL--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~-~~~--~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.++|++++||.... .++ .+...+-.-|.++.+++.+|.+||.|-++|.+.
T Consensus 289 ~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~ 341 (486)
T COG1492 289 RDADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRR 341 (486)
T ss_pred CCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhh
Confidence 35999999998653 111 122233345566667799999999999999975
No 128
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=94.97 E-value=0.11 Score=40.89 Aligned_cols=50 Identities=18% Similarity=0.356 Sum_probs=36.8
Q ss_pred CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
...|+|+++||.-... ......+.+-|++.+.+|.++++.|+|+.++...
T Consensus 79 ~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 79 LEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred hhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 4799999999964321 1222335555666677999999999999999984
No 129
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=94.83 E-value=0.047 Score=30.59 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=20.8
Q ss_pred CEEEEEecC-----------CCCchhhHHHHHHHHhCC
Q 027785 9 RSVLLLCGD-----------YMEDYEAMVPFQALLAFG 35 (219)
Q Consensus 9 ~kv~il~~~-----------g~~~~e~~~~~~~l~~ag 35 (219)
|||+|++.. |+...|++.|+++|.++|
T Consensus 1 kkiLiV~Ts~~~~~~~~~~TG~wl~E~~hpy~~f~~aG 38 (38)
T PF13587_consen 1 KKILIVVTSHDKLGDTGRPTGFWLSELAHPYYVFTDAG 38 (38)
T ss_dssp SEEEEEE---SEECTTTEE--B-HHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCcccccCCCCcceeccHHHhhHHHHHHHCc
Confidence 588888842 888999999999999986
No 130
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=94.78 E-value=0.11 Score=49.27 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=33.6
Q ss_pred CCccEEEEcCCCCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
..||.|||-+|+|. ....+.....++|++. .+.||.+||.|.++|+.+
T Consensus 130 ~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~ 178 (918)
T PLN02889 130 KAFDNIVISPGPGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYV 178 (918)
T ss_pred cCCCEEEECCCCCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHh
Confidence 36899999999873 2111112235556543 479999999999999986
No 131
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=94.42 E-value=0.015 Score=43.43 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=52.4
Q ss_pred HHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCccc--ccCC
Q 027785 26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEY--LAMN 103 (219)
Q Consensus 26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~--~~~~ 103 (219)
...++|++.|++++.+...... .....+.+ ...|+|++.||.-... ....
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~~--------------------------~~~~~~~i--~~ad~I~~~GG~~~~l~~~l~~ 55 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDRN--------------------------DADILEAI--READAIFLGGGDTFRLLRQLKE 55 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSCG--------------------------HHHHHHHH--HHSSEEEE--S-HHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEeccCCC--------------------------hHHHHHHH--HhCCEEEECCCCHHHHHHHHHh
Confidence 4578899999988777554310 00111222 3699999999964321 2334
Q ss_pred hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 104 DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 104 ~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
..+.+.|++.+++|+++++..+|+.++...
T Consensus 56 t~l~~~i~~~~~~G~vi~G~SAGA~i~~~~ 85 (154)
T PF03575_consen 56 TGLDEAIREAYRKGGVIIGTSAGAMILGPS 85 (154)
T ss_dssp TTHHHHHHHHHHTTSEEEEETHHHHCTSSB
T ss_pred CCHHHHHHHHHHCCCEEEEEChHHhhccCc
Confidence 568999999999999999999999887554
No 132
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=94.38 E-value=0.093 Score=45.95 Aligned_cols=43 Identities=23% Similarity=0.423 Sum_probs=36.3
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHH
Q 027785 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131 (219)
Q Consensus 86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La 131 (219)
+|.++||||+|.+ .-+--+.-++.+.+++.|..+||.|.++..
T Consensus 344 ~dgIlVPGGFG~R---G~eGkI~Ai~yAREn~iP~lGIClGmQ~av 386 (533)
T COG0504 344 VDGILVPGGFGYR---GVEGKIAAIRYARENNIPFLGICLGMQLAV 386 (533)
T ss_pred CCEEEeCCCCCcC---chHHHHHHHHHHHhcCCCEEEEchhHHHHH
Confidence 8999999999853 456677788888899999999999998543
No 133
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=94.37 E-value=0.046 Score=42.83 Aligned_cols=50 Identities=20% Similarity=0.332 Sum_probs=37.9
Q ss_pred CCccEEEEcCCCCc-cc-ccCC-hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAP-EY-LAMN-DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~-~~-~~~~-~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
..||++++-||..- .. ..++ ..-..-|++..+.++|+.+||.|.++|.+-
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y 103 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY 103 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence 47999999887642 11 1222 455677888889999999999999999975
No 134
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=94.04 E-value=0.036 Score=43.71 Aligned_cols=55 Identities=44% Similarity=0.773 Sum_probs=42.7
Q ss_pred ecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCC
Q 027785 41 ACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGR 95 (219)
Q Consensus 41 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~ 95 (219)
+.+.++.++.+.+..+..++++.+...-|.+...+.+|+++....||.|++|||.
T Consensus 193 v~~~~~~~e~~a~~~~~~~~~~v~~~~~g~~~~~~~~~dd~~~~syD~ivlPgg~ 247 (247)
T KOG2764|consen 193 VAPEKKAGEACATADHDLEGRQVPVEKVGHNFAKTVAWDDAAVSSYDLIVLPGGR 247 (247)
T ss_pred cCCCchhcceecceehhhhcCcceeeccccceEEEEEehhhhcccccEEEecCCC
Confidence 6677666677777777666666677777777777777999888899999999984
No 135
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=93.78 E-value=0.14 Score=48.29 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=43.1
Q ss_pred ccCccCCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 75 NATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 75 ~~~~~~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+..+.+ .+||.|++..|+|... ..+.+.+-+++..+.++||++||.|-++||.|
T Consensus 203 ~~~i~~---~~yDGlflSNGPGdPe--~~~~~v~~vr~lL~~~~PvfGIClGHQllA~A 256 (1435)
T KOG0370|consen 203 DYPIAK---EEYDGLFLSNGPGDPE--LCPLLVQNVRELLESNVPVFGICLGHQLLALA 256 (1435)
T ss_pred Cccccc---cccceEEEeCCCCCch--hhHHHHHHHHHHHhCCCCeEEEehhhHHHHHh
Confidence 444544 3899999999987432 35678888888888889999999999999987
No 136
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=93.56 E-value=0.29 Score=39.62 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=39.3
Q ss_pred CCccEEEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785 84 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (219)
Q Consensus 84 ~~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~ 132 (219)
...|+|++.||.-.. .......+.+.|++.+++|.++++..+|+.++..
T Consensus 81 ~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~ 131 (250)
T TIGR02069 81 SNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSD 131 (250)
T ss_pred hhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhccc
Confidence 478999999997432 1234567888999999999999999999987754
No 137
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=93.45 E-value=0.07 Score=42.23 Aligned_cols=50 Identities=32% Similarity=0.560 Sum_probs=30.7
Q ss_pred CCccEEEEcCCC-Cc--ccc-------------cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGR-AP--EYL-------------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~-~~--~~~-------------~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
...|.|++|||. .. ... .++.--..+++.+.++++||.+||-|.++|.-+
T Consensus 57 ~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~ 122 (217)
T PF07722_consen 57 DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVA 122 (217)
T ss_dssp HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHH
T ss_pred hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHH
Confidence 368999999997 32 111 112234667777778999999999999988653
No 138
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=93.33 E-value=0.4 Score=45.07 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=70.3
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
.||+|+--+|.+ .-..+...|..+||+..=+..+.- +.-+ ...++|--
T Consensus 1059 PkVAilREeGvN--g~rEMa~af~~AgF~~~DVtmtDl-------------------------L~G~-----~~ld~frG 1106 (1320)
T KOG1907|consen 1059 PKVAILREEGVN--GDREMAAAFYAAGFETVDVTMTDL-------------------------LAGR-----HHLDDFRG 1106 (1320)
T ss_pred CceEEeeccccc--cHHHHHHHHHHcCCceeeeeeehh-------------------------hcCc-----eeHhHhcc
Confidence 399999999988 566777789999997654433210 0011 22346888
Q ss_pred EEEcCCCCc-----------ccccCChHHHHHHHHHHh-cCCeEEEEehhHHHHHhCcccCCceEeeCCC
Q 027785 89 LVIPGGRAP-----------EYLAMNDSVIDLVRKFSN-SGKTIASICHGQLILAAADVVKGRKCTAYPP 146 (219)
Q Consensus 89 liipGG~~~-----------~~~~~~~~l~~~l~~~~~-~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~ 146 (219)
|+.+||+.- .....++.+..=..+|++ +..+-.+||+|.++++..|.+- -.+-.+|.
T Consensus 1107 laf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i~-p~~~~~p~ 1175 (1320)
T KOG1907|consen 1107 LAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWIG-PEVGKWPD 1175 (1320)
T ss_pred eeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHhcccC-ccccCCCc
Confidence 888898641 123557777776677776 4677889999999999988654 23434443
No 139
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=92.37 E-value=0.11 Score=39.61 Aligned_cols=56 Identities=18% Similarity=0.324 Sum_probs=37.4
Q ss_pred CccCCCCCCccEEEEcCCCCc-ccc---cCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785 77 TFDEIDPTKYDGLVIPGGRAP-EYL---AMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (219)
Q Consensus 77 ~~~~~~~~~~D~liipGG~~~-~~~---~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~ 132 (219)
+++++....||.+||.|.+-. ..+ .--+++.+.+....++..++.++|-|+++...
T Consensus 54 ~~~~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~ 113 (175)
T cd03131 54 TFDDIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALY 113 (175)
T ss_pred CHHHccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 466666678999999997631 111 11124555555555788999999999987554
No 140
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=92.20 E-value=0.77 Score=34.35 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=35.1
Q ss_pred CCCCCccEEEEcCCCCcccccCChHHHHHHHHHHh--cCCeEEEEehhHH
Q 027785 81 IDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHGQL 128 (219)
Q Consensus 81 ~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~--~~~~v~~ic~G~~ 128 (219)
.++.+||+++|...- ...+.++.+.+|++++.+ ..+|.+..|.+..
T Consensus 43 ~~l~~ydavVIgAsI--~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~vnl~ 90 (175)
T COG4635 43 PALEDYDAVVIGASI--RYGHFHEAVQSFVKKHAEALSTKPSAFFSVNLT 90 (175)
T ss_pred cChhhCceEEEecch--hhhhhHHHHHHHHHHHHHHHhcCCceEEEeehh
Confidence 345689999995432 233567899999999988 6899999998764
No 141
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.94 E-value=1.7 Score=36.34 Aligned_cols=88 Identities=20% Similarity=0.174 Sum_probs=54.8
Q ss_pred CCEEEEEecCCCCc--hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785 8 KRSVLLLCGDYMED--YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 85 (219)
Q Consensus 8 ~~kv~il~~~g~~~--~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 85 (219)
.+||+++.-++-.. ..+....+.|.+.|+++.+....... .+.. .+.......
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~--------------------~~~~-----~~~~~~~~~ 57 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKD--------------------NPYP-----VFLASASEL 57 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhh--------------------cccc-----chhhccccC
Confidence 46899998876433 23556667788899987775433210 0000 011111236
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh-hHH
Q 027785 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH-GQL 128 (219)
Q Consensus 86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~-G~~ 128 (219)
+|++++.||.| .++..++.+...+.|+++|-. |..
T Consensus 58 ~d~vi~~GGDG--------T~l~~~~~~~~~~~pv~gin~~G~l 93 (305)
T PRK02645 58 IDLAIVLGGDG--------TVLAAARHLAPHDIPILSVNVGGHL 93 (305)
T ss_pred cCEEEEECCcH--------HHHHHHHHhccCCCCEEEEecCCcc
Confidence 89999999865 355566666677899999987 654
No 142
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=91.32 E-value=0.43 Score=41.39 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=35.6
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHH
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La 131 (219)
...|-++||||+|.+ .-+--+.-++.+.+++.|..+||.|.++..
T Consensus 362 ~~adGilvPGGFG~R---GveG~i~Aak~ARen~iP~LGiCLGmQ~Av 406 (585)
T KOG2387|consen 362 KSADGILVPGGFGDR---GVEGKILAAKWARENKIPFLGICLGMQLAV 406 (585)
T ss_pred ccCCeEEeCCccccc---chhHHHHHHHHHHhcCCCeEeeehhhhHHH
Confidence 368999999999864 345566667777889999999999987543
No 143
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=90.60 E-value=0.47 Score=37.21 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=39.0
Q ss_pred CCccEEEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc
Q 027785 84 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (219)
Q Consensus 84 ~~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG 134 (219)
.+-|+|+|.||.--. ...+...+.+.|++..++|++.++..+|+.+-...+
T Consensus 83 ~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~p~I 135 (224)
T COG3340 83 MKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAGPTI 135 (224)
T ss_pred hhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeecCce
Confidence 468999998886321 123445689999999999999999999997666553
No 144
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=90.54 E-value=0.38 Score=38.06 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=40.1
Q ss_pred CCccEEEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
...|+|++.||.-.. .......+.+.|++.+++|.++++..+|+.++...
T Consensus 82 ~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 82 RDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 478999999996432 22345578899999999999999999999998754
No 145
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=90.03 E-value=6.2 Score=32.11 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=39.7
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEE-EEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecC
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIA-SICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEP 161 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~-~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~ 161 (219)
+.++|+|+|+|...+ -.+.-..-|.++..+|..+. .+-....-+. +...+.. ...+...+.|..+|..+.+.
T Consensus 195 P~~~d~Lvi~~P~~~----ls~~e~~~l~~yl~~GG~ll~~~d~~~~~~~--~~~~~~~-~~~~~L~~lL~~~Gi~~~~~ 267 (271)
T PF09822_consen 195 PDDADVLVIAGPKTD----LSEEELYALDQYLMNGGKLLILLDPFSVELQ--GLWAGGA-QRDSNLNDLLEEYGIRINPG 267 (271)
T ss_pred CCCCCEEEEECCCCC----CCHHHHHHHHHHHHcCCeEEEEECCcccccc--ccccccc-ccccCHHHHHHHcCCEeCCC
Confidence 468999999885432 34566666777776665544 3333322111 2111111 11566677777777665544
No 146
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=87.98 E-value=2.2 Score=33.31 Aligned_cols=59 Identities=24% Similarity=0.405 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCccccc
Q 027785 22 YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLA 101 (219)
Q Consensus 22 ~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~ 101 (219)
.++...+..|.+.|+.+++++++. +...|.+||+|.-. .
T Consensus 30 ~~~~~~y~al~~~gi~vDvv~~~~------------------------------------dL~~Ykllv~P~~~-----~ 68 (207)
T PF08532_consen 30 DQVRGWYRALRELGIPVDVVSPDD------------------------------------DLSGYKLLVLPSLY-----I 68 (207)
T ss_dssp HHHHHHHHHHHTTT--EEEE-TTS--------------------------------------TT-SEEEES--S-----C
T ss_pred HHHHHHHHHHHHcCCceEEecCcC------------------------------------CcccCcEEEEeeEE-----E
Confidence 356778889999999999997652 12369999999743 3
Q ss_pred CChHHHHHHHHHHhcCCeEE
Q 027785 102 MNDSVIDLVRKFSNSGKTIA 121 (219)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~v~ 121 (219)
-++.+.+.|+++.++|..+.
T Consensus 69 l~~~~~~~L~~yV~~GG~li 88 (207)
T PF08532_consen 69 LSPEFAERLRAYVENGGTLI 88 (207)
T ss_dssp --HHH---HHHHHT-SS-EE
T ss_pred EChHHHHHHHHHHHCCCEEE
Confidence 57888899999999876554
No 147
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=87.95 E-value=3.6 Score=32.44 Aligned_cols=89 Identities=21% Similarity=0.355 Sum_probs=59.1
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCC---CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFG---VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
+|.|.-.+|.+...+-.....|+.-- +.+..+... .+ .+..|.+ .-
T Consensus 2 ~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~--------------------------~L-i~EpW~~----~T 50 (253)
T COG4285 2 NVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDAQ--------------------------FL-IKEPWEE----TT 50 (253)
T ss_pred ceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeeeh--------------------------ee-ecCcchh----ce
Confidence 68888889999988888888887532 344444221 11 1223543 35
Q ss_pred cEEEEcCCCCccc-ccCChHHHHHHHHHHhcCCeEEEEehhHHH
Q 027785 87 DGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLI 129 (219)
Q Consensus 87 D~liipGG~~~~~-~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~ 129 (219)
-+|++|||..... -.-++..-+-|....++|.-..+||+|..+
T Consensus 51 ~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF 94 (253)
T COG4285 51 LLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGGYF 94 (253)
T ss_pred EEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence 6899999975321 122455567777788889999999999864
No 148
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.36 E-value=5.8 Score=32.63 Aligned_cols=89 Identities=15% Similarity=0.158 Sum_probs=51.5
Q ss_pred CEEEEEecCCCCc--hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 9 RSVLLLCGDYMED--YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 9 ~kv~il~~~g~~~--~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
+||+|+...+-.. ..+......|+..|+++.+....... . + ... .....+....++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~----------------~----~-~~~-~~~~~~~~~~~~ 58 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEH----------------L----P-EFS-EEDVLPLEEMDV 58 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhh----------------c----C-ccc-ccccccccccCC
Confidence 3799998765432 23445666788899988875422110 0 0 000 000111112368
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
|++++.||.|. +++.++ .+..+.||.+|-.|..
T Consensus 59 d~vi~iGGDGT--------lL~a~~-~~~~~~pi~gIn~G~l 91 (277)
T PRK03708 59 DFIIAIGGDGT--------ILRIEH-KTKKDIPILGINMGTL 91 (277)
T ss_pred CEEEEEeCcHH--------HHHHHH-hcCCCCeEEEEeCCCC
Confidence 99999998663 344455 5556888998888874
No 149
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=86.92 E-value=6.1 Score=30.08 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=29.6
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHh--cCCeEEEEehh
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHG 126 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~--~~~~v~~ic~G 126 (219)
..+||.||+.++.-.. ...+.+.+|+++... ++|+++..|.|
T Consensus 44 l~~yD~vIlGspi~~G--~~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 44 LSDYDRVVIGASIRYG--HFHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred HHHCCEEEEECccccC--CcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 3579998886543222 235788899887543 68888888887
No 150
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=86.67 E-value=5.8 Score=29.18 Aligned_cols=60 Identities=25% Similarity=0.440 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCccccc
Q 027785 22 YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLA 101 (219)
Q Consensus 22 ~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~ 101 (219)
.++...+..|.+.|+.+++++++. +..+|++||+|.-..
T Consensus 26 ~~~~~~~~~l~~~gi~~d~v~~~~------------------------------------~l~~y~~vi~P~~~~----- 64 (154)
T cd03143 26 DLALALYRALRELGIPVDVVPPDA------------------------------------DLSGYKLVVLPDLYL----- 64 (154)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC------------------------------------CcccCCEEEECchhc-----
Confidence 467788888889999998886432 113799999997532
Q ss_pred CChHHHHHHHHHHhcCCeEEE
Q 027785 102 MNDSVIDLVRKFSNSGKTIAS 122 (219)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~v~~ 122 (219)
..+...+.|+++.++|..+.+
T Consensus 65 ~~~~~~~~l~~~v~~GG~li~ 85 (154)
T cd03143 65 LSDATAAALRAYVENGGTLVA 85 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEE
Confidence 356888999999998876554
No 151
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.43 E-value=7.4 Score=32.36 Aligned_cols=91 Identities=16% Similarity=0.139 Sum_probs=51.6
Q ss_pred CEEEEEecCCCCc-hh-hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 9 RSVLLLCGDYMED-YE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 9 ~kv~il~~~g~~~-~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
++|+|+.-++-.. .+ +..+.+.|.+.|+++.+....... . ......... ..+. ...+
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~----------------~-~~~~~~~~~---~~~~-~~~~ 63 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEV----------------L-PGHGLQTVS---RKLL-GEVC 63 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhh----------------c-Ccccccccc---hhhc-ccCC
Confidence 3799998765532 22 335556677888887765432110 0 000000000 1111 1368
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
|++++.||.|. ++..++.+...+.||.+|-.|..
T Consensus 64 d~vi~~GGDGt--------~l~~~~~~~~~~~Pvlgin~G~l 97 (295)
T PRK01231 64 DLVIVVGGDGS--------LLGAARALARHNVPVLGINRGRL 97 (295)
T ss_pred CEEEEEeCcHH--------HHHHHHHhcCCCCCEEEEeCCcc
Confidence 99999998653 44445556667889999988864
No 152
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=86.42 E-value=7.7 Score=32.16 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=52.4
Q ss_pred CCEEEEEecCCCCchh--hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785 8 KRSVLLLCGDYMEDYE--AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 85 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e--~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 85 (219)
.++|+|+.-.+-.... +......|+..|+++.+....... .. ... +. .....+. ...
T Consensus 5 ~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~----------------~~-~~~--~~-~~~~~~~-~~~ 63 (291)
T PRK02155 5 FKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARN----------------IG-LTG--YP-ALTPEEI-GAR 63 (291)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhh----------------cC-ccc--cc-ccChhHh-ccC
Confidence 4679999876553222 455556677888877664322110 00 000 00 0011222 136
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
+|++|+.||.| .+++.++.+...+.|+.+|-.|..
T Consensus 64 ~d~vi~~GGDG--------t~l~~~~~~~~~~~pilGIn~G~l 98 (291)
T PRK02155 64 ADLAVVLGGDG--------TMLGIGRQLAPYGVPLIGINHGRL 98 (291)
T ss_pred CCEEEEECCcH--------HHHHHHHHhcCCCCCEEEEcCCCc
Confidence 89999999865 345556666667888888888774
No 153
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=86.04 E-value=4.1 Score=34.37 Aligned_cols=49 Identities=29% Similarity=0.443 Sum_probs=37.7
Q ss_pred CccEEEEcCC--CCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 85 KYDGLVIPGG--RAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 85 ~~D~liipGG--~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
..|-||+||- +++ .+......+.+-|++..+.+||+.+||.|.++|-..
T Consensus 39 ~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~g 90 (541)
T KOG0623|consen 39 NADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALFDG 90 (541)
T ss_pred cCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhcc
Confidence 5788999973 232 222345678888999999999999999999988653
No 154
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=84.51 E-value=6.4 Score=29.71 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=40.9
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC----------cccCCceEeeCCCC
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA----------DVVKGRKCTAYPPV 147 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a----------GlL~g~~~t~~~~~ 147 (219)
...++-|+|..|+|.. .+..--.+-|+++ ....|+.++|.|-+.+.++ ++..||..-.|.+.
T Consensus 61 ~~NP~~LliSPGPG~P--~DsGIs~~~i~~f-~~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~ 132 (223)
T KOG0026|consen 61 RKNPRGLLISPGPGTP--QDSGISLQTVLEL-GPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDE 132 (223)
T ss_pred hcCCCeEEecCCCCCC--ccccchHHHHHHh-CCCCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccCC
Confidence 3457888887777632 1344445556654 4567899999999987765 46777766666554
No 155
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.97 E-value=16 Score=30.36 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=53.1
Q ss_pred CCEEEEEecCCCCc-hh-hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceec-cccCCccccccCccCCCCC
Q 027785 8 KRSVLLLCGDYMED-YE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYS-ETRGHNFALNATFDEIDPT 84 (219)
Q Consensus 8 ~~kv~il~~~g~~~-~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~i~~~~~~~~~~~~ 84 (219)
.+||+|+.-++-.. .+ +....+.|.+.|+++.+-.....+ +. ... ...+... ....+. ..
T Consensus 5 ~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~-~~------------~~~~~~~~~~~---~~~~~~-~~ 67 (296)
T PRK04539 5 FHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKE-GC------------IYTQDTVGCHI---VNKTEL-GQ 67 (296)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccc-cc------------hhccccccccc---cchhhc-Cc
Confidence 46899998765432 22 335556677888887664321100 00 000 0001111 011122 13
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
+.|++++.||.| .++.-.+.+...+.||.+|-.|..
T Consensus 68 ~~D~vi~lGGDG--------T~L~aa~~~~~~~~PilGIN~G~l 103 (296)
T PRK04539 68 YCDLVAVLGGDG--------TFLSVAREIAPRAVPIIGINQGHL 103 (296)
T ss_pred CCCEEEEECCcH--------HHHHHHHHhcccCCCEEEEecCCC
Confidence 589999999865 355555666667889999998873
No 156
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.41 E-value=16 Score=30.32 Aligned_cols=95 Identities=15% Similarity=0.151 Sum_probs=53.6
Q ss_pred CCEEEEEecCCCCc-hh-hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785 8 KRSVLLLCGDYMED-YE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 85 (219)
Q Consensus 8 ~~kv~il~~~g~~~-~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 85 (219)
.++|+|+.-++-.. .+ +....+.|.+.|+++.+-..... .. +........+.+. ..+
T Consensus 5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~----------------~~----~~~~~~~~~~~~~-~~~ 63 (292)
T PRK03378 5 FKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAH----------------EL----QLKNVKTGTLAEI-GQQ 63 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh----------------hc----Ccccccccchhhc-CCC
Confidence 46899998764432 22 33455667788887766432111 00 0000000111222 236
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH-HHH
Q 027785 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL-ILA 131 (219)
Q Consensus 86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~-~La 131 (219)
+|++++.||.| .++.-.+.+...+.||.+|-.|.. +|+
T Consensus 64 ~d~vi~lGGDG--------T~L~aa~~~~~~~~Pilgin~G~lGFl~ 102 (292)
T PRK03378 64 ADLAIVVGGDG--------NMLGAARVLARYDIKVIGINRGNLGFLT 102 (292)
T ss_pred CCEEEEECCcH--------HHHHHHHHhcCCCCeEEEEECCCCCccc
Confidence 89999999865 345555666666789999998883 444
No 157
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=81.80 E-value=5.8 Score=26.11 Aligned_cols=21 Identities=19% Similarity=-0.141 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHhCCCeEEEec
Q 027785 22 YEAMVPFQALLAFGVSVDAAC 42 (219)
Q Consensus 22 ~e~~~~~~~l~~ag~~v~~~s 42 (219)
..+....+.|+..||+|.-+.
T Consensus 8 ~~Ls~v~~~L~~~GyeVv~l~ 28 (80)
T PF03698_consen 8 EGLSNVKEALREKGYEVVDLE 28 (80)
T ss_pred CCchHHHHHHHHCCCEEEecC
Confidence 367788999999999886654
No 158
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=79.41 E-value=10 Score=29.72 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=28.1
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
..+||+||+....+.. .++.-.+-|+++.++|+.++++..++
T Consensus 50 L~~~Dvvv~~~~~~~~---l~~~~~~al~~~v~~Ggglv~lH~~~ 91 (217)
T PF06283_consen 50 LKGYDVVVFYNTGGDE---LTDEQRAALRDYVENGGGLVGLHGAA 91 (217)
T ss_dssp HCT-SEEEEE-SSCCG---S-HHHHHHHHHHHHTT-EEEEEGGGG
T ss_pred hcCCCEEEEECCCCCc---CCHHHHHHHHHHHHcCCCEEEEcccc
Confidence 3589999998765311 35677778888888999999998443
No 159
>PRK09271 flavodoxin; Provisional
Probab=78.91 E-value=23 Score=26.29 Aligned_cols=89 Identities=15% Similarity=0.045 Sum_probs=45.1
Q ss_pred EEEEEecC--CCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 10 SVLLLCGD--YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 10 kv~il~~~--g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
||.|+-.. |....=.-.+.+.|...|+++++....... + .... .+..++|
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~------------------------~--~~~~--~~~~~~d 53 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQT------------------------L--AEYP--LDPEDYD 53 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEeccccc------------------------c--cccc--cCcccCC
Confidence 66666654 333222334457777888887765432210 0 0001 1234789
Q ss_pred EEEEcCC-CCccccc-CChHHHHHHHHHHhcCCeEEEEehh
Q 027785 88 GLVIPGG-RAPEYLA-MNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 88 ~liipGG-~~~~~~~-~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
+|+|... .+...++ .-..+.++|.....++|.++.+++|
T Consensus 54 ~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 54 LYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred EEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 9998653 2222111 1233444444443467878877776
No 160
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=78.70 E-value=4.4 Score=33.56 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=59.6
Q ss_pred CCEEEEEec-CCCCchhhHHHHHHHHhCC--CeEEEecCCCCCCCCCCcccccCCCcceeccccCCcccc-ccCccCCCC
Q 027785 8 KRSVLLLCG-DYMEDYEAMVPFQALLAFG--VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFAL-NATFDEIDP 83 (219)
Q Consensus 8 ~~kv~il~~-~g~~~~e~~~~~~~l~~ag--~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~-~~~~~~~~~ 83 (219)
+.||+||-. |.=...| ..+...|.... .+++++.+..... -+ ++ -..+.. =.+++++..
T Consensus 35 pL~I~ILNLMP~K~~TE-~Q~lRlL~ntplqv~i~~~~~~sh~~------k~---------t~-~~hl~~fY~~f~~ik~ 97 (300)
T TIGR01001 35 PLEILILNLMPKKIETE-NQFLRLLSNSPLQVNITLLRTDSRKS------KN---------TP-IEHLNKFYTTFEAVKD 97 (300)
T ss_pred ceeEEEEecCCccHHHH-HHHHHHhcCCCCceEEEEEEeccccC------CC---------CC-HHHHHHHhhCHHHHhc
Confidence 678888864 3333333 33455554444 4466766653210 00 00 000100 124666656
Q ss_pred CCccEEEEcCCCCc----ccccCChHHHHHHHHHHhcCCeEEEEehhHHHH
Q 027785 84 TKYDGLVIPGGRAP----EYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130 (219)
Q Consensus 84 ~~~D~liipGG~~~----~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~L 130 (219)
..||.+||.|.+-. +...--+++.+.+....++......+|-|+...
T Consensus 98 ~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAa 148 (300)
T TIGR01001 98 RKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAG 148 (300)
T ss_pred CCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 78999999997521 112223567777776677788889999999753
No 161
>PLN02204 diacylglycerol kinase
Probab=77.94 E-value=3.9 Score=37.27 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=40.7
Q ss_pred CCCEEEEEecCC----CCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCC
Q 027785 7 GKRSVLLLCGDY----MEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID 82 (219)
Q Consensus 7 ~~~kv~il~~~g----~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 82 (219)
++||+.|++.|- -....+-.+...|.++++++.++-.... |.....-..+.+..
T Consensus 158 r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~a----------------------ghA~d~~~~~~~~~ 215 (601)
T PLN02204 158 RPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERA----------------------GHAFDVMASISNKE 215 (601)
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCc----------------------chHHHHHHHHhhhh
Confidence 367899988762 1112333577788999988777655432 11111111122222
Q ss_pred CCCccEEEEcCCCCc
Q 027785 83 PTKYDGLVIPGGRAP 97 (219)
Q Consensus 83 ~~~~D~liipGG~~~ 97 (219)
...||.||+.||.|.
T Consensus 216 l~~~D~VVaVGGDGt 230 (601)
T PLN02204 216 LKSYDGVIAVGGDGF 230 (601)
T ss_pred ccCCCEEEEEcCccH
Confidence 357999999999884
No 162
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.45 E-value=26 Score=29.33 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=54.2
Q ss_pred CCEEEEEecCCCCc-hh-hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785 8 KRSVLLLCGDYMED-YE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 85 (219)
Q Consensus 8 ~~kv~il~~~g~~~-~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 85 (219)
++||+|+.-++-.. .+ +..+...|...|+++.+......... . . ......|..+..-....+. ..+
T Consensus 5 ~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~-----~---~---~~~~~~~~~~~~~~~~~~~-~~~ 72 (306)
T PRK03372 5 SRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLG-----A---T---HPAPDDFRAMEVVDADPDA-ADG 72 (306)
T ss_pred ccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhc-----c---c---ccccccccccccccchhhc-ccC
Confidence 36899998765432 22 34555567788888877543211000 0 0 0000000000000000111 235
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
.|++++.||.| .++...+.+...+.||.+|-.|..
T Consensus 73 ~D~vi~lGGDG--------T~L~aar~~~~~~~PilGIN~G~l 107 (306)
T PRK03372 73 CELVLVLGGDG--------TILRAAELARAADVPVLGVNLGHV 107 (306)
T ss_pred CCEEEEEcCCH--------HHHHHHHHhccCCCcEEEEecCCC
Confidence 89999999865 455666777778889999998875
No 163
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=77.13 E-value=5.4 Score=35.74 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=32.3
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhc--CCeEEEEehhHHHHHh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS--GKTIASICHGQLILAA 132 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~--~~~v~~ic~G~~~La~ 132 (219)
..||+|+|-.|+|.. ..+.-+..+.+.... ..||.+||.|-+.|+-
T Consensus 63 ~~FDaIVVgPGPG~P---~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l 110 (767)
T KOG1224|consen 63 VAFDAIVVGPGPGSP---MCAADIGICLRLLLECRDIPILGICLGFQALGL 110 (767)
T ss_pred cccceEEecCCCCCC---CcHHHHHHHHHHHHhcCCCceeeeehhhHhHhh
Confidence 469999998777632 234445555555554 4899999999987763
No 164
>PRK03094 hypothetical protein; Provisional
Probab=75.63 E-value=12 Score=24.57 Aligned_cols=21 Identities=24% Similarity=-0.069 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHhCCCeEEEec
Q 027785 22 YEAMVPFQALLAFGVSVDAAC 42 (219)
Q Consensus 22 ~e~~~~~~~l~~ag~~v~~~s 42 (219)
..+..+.+.|+..||+|.-+.
T Consensus 8 ~~Ls~i~~~L~~~GYeVv~l~ 28 (80)
T PRK03094 8 QSLTDVQQALKQKGYEVVQLR 28 (80)
T ss_pred cCcHHHHHHHHHCCCEEEecC
Confidence 367788999999999886653
No 165
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=75.42 E-value=6 Score=29.18 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=55.5
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
..||.++=.+|+...=+-......|.-+.+..++... .. .+.+....++.|..+ +++....+.|
T Consensus 19 ~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~-d~----------e~a~~l~~~~~Gmq~-----~~~~~~~~~D 82 (147)
T PF09897_consen 19 GEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPDA-DL----------EKARKLEVTDIGMQV-----LGEKKDPHPD 82 (147)
T ss_dssp -SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEETT--G----------GG-EEEEEETTEEE------EEEE--S-EE
T ss_pred CCeEEEeCCCcccccHHHHHHHHHhhhccceeecCCC-Ch----------hhhheeeccCccccc-----ccccCCCCCC
Confidence 5688888888887432222233333333355444322 10 000112233344442 2222223499
Q ss_pred EEEEcCCCCccccc-CChHHHHHHHHHHhcCCeEEEEehhHHHHHhCccc
Q 027785 88 GLVIPGGRAPEYLA-MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV 136 (219)
Q Consensus 88 ~liipGG~~~~~~~-~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL 136 (219)
+|++-||....... ..+.+.+.|.+..... |.++|-=. ++.++|..
T Consensus 83 ~vVlmGGLAMP~~~v~~e~v~~li~ki~~~~--iiGiCFms-~F~kagW~ 129 (147)
T PF09897_consen 83 VVVLMGGLAMPKSGVTPEDVNELIKKISPKK--IIGICFMS-MFEKAGWD 129 (147)
T ss_dssp EEEEEGGGGSTTTS--HHHHHHHHHHHEEEE--EEEEEETT-HHHHTTHH
T ss_pred EEEEEcccccCCCCCCHHHHHHHHHHhCcCC--EEEEehHH-HHHHcCCc
Confidence 99999998643322 3356777777766544 99999844 67777754
No 166
>PRK13054 lipid kinase; Reviewed
Probab=73.82 E-value=5.8 Score=32.85 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=23.5
Q ss_pred CCEEEEEecCCCC-chhhHHHHHHHHhCCCeEEEecC
Q 027785 8 KRSVLLLCGDYME-DYEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 8 ~~kv~il~~~g~~-~~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
++|+.|++.+... ...+......|.++|+++++...
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t 39 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVT 39 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEe
Confidence 4688877765432 23455666778889988776444
No 167
>PRK11914 diacylglycerol kinase; Reviewed
Probab=72.49 E-value=9.6 Score=31.60 Aligned_cols=37 Identities=19% Similarity=0.034 Sum_probs=24.0
Q ss_pred CCEEEEEecCCCC----chhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYME----DYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~----~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
++|+.|++.|..- ...+......|+..|+++.++..+
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~ 48 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGT 48 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeC
Confidence 4689888876321 123345677888999888765443
No 168
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.43 E-value=42 Score=28.05 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=55.1
Q ss_pred CEEEEEecCCCC-chh-hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 9 RSVLLLCGDYME-DYE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 9 ~kv~il~~~g~~-~~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
+||+|+.-++-. ..+ +....+.|.+.|+++.+......... . .... ......+ +.. ....+. ..+.
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~-~--~~~~-----~~~~~~~--~~~-~~~~~~-~~~~ 69 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILG-Y--ANPD-----QPVCHTG--IDQ-LVPPGF-DSSM 69 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcC-c--cccc-----ccccccc--ccc-cChhhc-ccCc
Confidence 579999876543 222 34555667788988876543211000 0 0000 0000000 000 011121 1358
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH-HHH
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL-ILA 131 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~-~La 131 (219)
|++++.||.| .++...+.+...+.||.+|-.|.. +|+
T Consensus 70 Dlvi~iGGDG--------TlL~aar~~~~~~iPilGIN~G~lGFLt 107 (305)
T PRK02649 70 KFAIVLGGDG--------TVLSAARQLAPCGIPLLTINTGHLGFLT 107 (305)
T ss_pred CEEEEEeCcH--------HHHHHHHHhcCCCCcEEEEeCCCCcccc
Confidence 9999999865 456666777778899999998875 344
No 169
>PRK05568 flavodoxin; Provisional
Probab=71.41 E-value=35 Score=24.46 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=24.6
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHh--cCCeEEEEeh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICH 125 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~--~~~~v~~ic~ 125 (219)
.++|.|++....-.........+..|+.+... ++|.++.+|+
T Consensus 47 ~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~~~~k~~~~f~t 90 (142)
T PRK05568 47 KGADVVALGSPAMGDEVLEEGEMEPFVESISSLVKGKKLVLFGS 90 (142)
T ss_pred HhCCEEEEECCccCcccccchhHHHHHHHhhhhhCCCEEEEEEc
Confidence 47999998654211111112456666666533 6788888877
No 170
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=71.14 E-value=33 Score=26.87 Aligned_cols=119 Identities=22% Similarity=0.256 Sum_probs=70.6
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
++|+|++-+|-+.-|-......|...|+.|+++-....+........... +...-..+..+.. ..+ .+.++|+
T Consensus 50 ~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~---~~l~~~~~v~~~~---~~~-~~~~~dv 122 (203)
T COG0062 50 RRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANL---KSLGIGGVVKIKE---LED-EPESADV 122 (203)
T ss_pred CEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHH---HhhcCCcceeecc---ccc-ccccCCE
Confidence 57999999999999999999999999999988876543211000000000 0000001111111 110 1334555
Q ss_pred EE----EcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCC
Q 027785 89 LV----IPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 138 (219)
Q Consensus 89 li----ipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g 138 (219)
|| =.|..++ -.+++...|....+++++|.++-.=+-+-+.+|-.-|
T Consensus 123 IVDalfG~G~~g~----lrep~a~~Ie~iN~~~~pivAVDiPSGl~~dtG~~~~ 172 (203)
T COG0062 123 IVDALFGTGLSGP----LREPFASLIEAINASGKPIVAVDIPSGLDADTGEVLG 172 (203)
T ss_pred EEEeceecCCCCC----CccHHHHHHHHHHhcCCceEEEeCCCCcCCCCCcccC
Confidence 44 2333332 3467778888888999999999987777777765433
No 171
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=70.50 E-value=20 Score=33.07 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=61.3
Q ss_pred CCEEEEEecCC----------------CCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCc
Q 027785 8 KRSVLLLCGDY----------------MEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHN 71 (219)
Q Consensus 8 ~~kv~il~~~g----------------~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 71 (219)
+.||+||-..| -+..++.++++.|.-..++|+++|=+.
T Consensus 435 ~~kVAvLn~WGklRsW~~~~v~Hal~ykq~ysy~GilEaLSGlp~dV~FISFdD-------------------------- 488 (716)
T PF09508_consen 435 PFKVAVLNSWGKLRSWQCHMVAHALYYKQIYSYIGILEALSGLPFDVEFISFDD-------------------------- 488 (716)
T ss_dssp SSEEEEEESSGGGGTTTTT-SSTT---TTTHHHHHHHHHHHTSSSEEEEEEHHH--------------------------
T ss_pred cceEEEeechhhhchhhhcccccccchhhhhhHHHHHHHhcCCCceeEEecHHH--------------------------
Confidence 67999998542 123678899999999999999997542
Q ss_pred cccccCccCCCCCCccEEEEcCCCCc----ccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 72 FALNATFDEIDPTKYDGLVIPGGRAP----EYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 72 i~~~~~~~~~~~~~~D~liipGG~~~----~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
|..+ .+ +++.|+||=.|-.+. .....++.+..-|+++..+|.-..+++.-+.
T Consensus 489 i~~~----gi-~~didViINaGdA~TA~SGG~~W~d~~iv~~lr~fV~~GGGfIGVGEPsA 544 (716)
T PF09508_consen 489 IREN----GI-LEDIDVIINAGDAGTAWSGGENWKDPKIVTALREFVYNGGGFIGVGEPSA 544 (716)
T ss_dssp HHHH-----S--TT--EEEEEESTTSTTT-GGGGG-HHHHHHHHHHHHTT-EEEEEESTEE
T ss_pred Hhhc----CC-cccCCEEEecCcccccccCccccCCHHHHHHHHHHHHcCCCEEEcCCCcc
Confidence 1111 11 357899998875432 2246789999999999999998888886543
No 172
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=69.71 E-value=3.7 Score=35.40 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=23.9
Q ss_pred CCEEEEEecCCCC-----chhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYME-----DYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~-----~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+|||.|++.+..+ ..=.-...-+|.-+|++|+++-.+
T Consensus 60 ~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd 101 (535)
T KOG4435|consen 60 PKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTD 101 (535)
T ss_pred cceEEEEechhhccchhhhhhhcccchheeeccceEEEEecC
Confidence 6899999975222 111233444567789999998765
No 173
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.32 E-value=44 Score=27.70 Aligned_cols=89 Identities=20% Similarity=0.219 Sum_probs=53.0
Q ss_pred CCEEEEEecCCCCchhhH-HHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 8 KRSVLLLCGDYMEDYEAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~-~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
.+||+|+.-++-+..++. ...+.|.+.|.++.+-..... .. ...+. ...+. ..++
T Consensus 10 ~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~----------------~~-~~~~~------~~~~~-~~~~ 65 (287)
T PRK14077 10 IKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAE----------------IL-DLPGY------GLDEL-FKIS 65 (287)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhh----------------hh-ccccc------chhhc-ccCC
Confidence 468999987653333333 345557677877766432211 00 00010 11222 1368
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
|++|+.||.| .+++..+.+...+.||.+|-.|..
T Consensus 66 Dlvi~iGGDG--------T~L~aa~~~~~~~~PilGIN~G~l 99 (287)
T PRK14077 66 DFLISLGGDG--------TLISLCRKAAEYDKFVLGIHAGHL 99 (287)
T ss_pred CEEEEECCCH--------HHHHHHHHhcCCCCcEEEEeCCCc
Confidence 9999999865 456666777777899999999884
No 174
>PRK06455 riboflavin synthase; Provisional
Probab=68.81 E-value=17 Score=27.21 Aligned_cols=36 Identities=3% Similarity=-0.094 Sum_probs=24.2
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhC--CCeEEEecCC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAF--GVSVDAACPG 44 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~a--g~~v~~~s~~ 44 (219)
+||+|+...-....=+.+..+.|.+. +.++.++..-
T Consensus 2 ~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VP 39 (155)
T PRK06455 2 MKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVP 39 (155)
T ss_pred cEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 58999997633333367888999984 4666666443
No 175
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.12 E-value=54 Score=27.22 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=29.6
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH-HHH
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL-ILA 131 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~-~La 131 (219)
++|++++.||.| .++.-.+.+...+.||.+|-.|.. +|+
T Consensus 64 ~~dlvi~lGGDG--------T~L~aa~~~~~~~~PilGIN~G~lGFLt 103 (292)
T PRK01911 64 SADMVISIGGDG--------TFLRTATYVGNSNIPILGINTGRLGFLA 103 (292)
T ss_pred CCCEEEEECCcH--------HHHHHHHHhcCCCCCEEEEecCCCCccc
Confidence 689999999865 455666666677899999999885 444
No 176
>PRK06756 flavodoxin; Provisional
Probab=67.59 E-value=45 Score=24.20 Aligned_cols=86 Identities=10% Similarity=0.116 Sum_probs=47.6
Q ss_pred CEEEEEecCCCCchhh--HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 9 RSVLLLCGDYMEDYEA--MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~--~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
+||.|+-+...--.+. -.+.+.|+..|.++++......+ ...+ ..+|
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~-----------------------------~~~~--~~~~ 50 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSP-----------------------------EASI--LEQY 50 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccC-----------------------------CHHH--HhcC
Confidence 4777776653333332 33456677778877766443210 0122 2478
Q ss_pred cEEEEcCCC-CcccccCChHHHHHHHHHH---hcCCeEEEEehhH
Q 027785 87 DGLVIPGGR-APEYLAMNDSVIDLVRKFS---NSGKTIASICHGQ 127 (219)
Q Consensus 87 D~liipGG~-~~~~~~~~~~l~~~l~~~~---~~~~~v~~ic~G~ 127 (219)
|.|++.... +... ..+.+..|+.+.. -++++++.+++|.
T Consensus 51 d~vi~gspt~~~g~--~p~~~~~fl~~l~~~~l~~k~~~~fgt~~ 93 (148)
T PRK06756 51 DGIILGAYTWGDGD--LPDDFLDFYDAMDSIDLTGKKAAVFGSCD 93 (148)
T ss_pred CeEEEEeCCCCCCC--CcHHHHHHHHHHhcCCCCCCEEEEEeCCC
Confidence 998885422 1111 1234777777653 3688888887754
No 177
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=65.58 E-value=14 Score=29.99 Aligned_cols=84 Identities=14% Similarity=0.239 Sum_probs=53.1
Q ss_pred CEEEEEec------CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCC
Q 027785 9 RSVLLLCG------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID 82 (219)
Q Consensus 9 ~kv~il~~------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 82 (219)
++++|+.- -........-+.+.|...|+.+.....-++..+ .|. ..+...
T Consensus 2 ~~a~iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~---------------------~I~--~~l~~a- 57 (255)
T COG1058 2 MKAEIIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVGDNPD---------------------RIV--EALREA- 57 (255)
T ss_pred ceEEEEEEccceecCceecchHHHHHHHHHhcCceEEEEEecCCCHH---------------------HHH--HHHHHH-
Confidence 35655552 245566778888999999998877655443100 011 112222
Q ss_pred CCCccEEEEcCCCCcc---------------cccCChHHHHHHHHHHhc
Q 027785 83 PTKYDGLVIPGGRAPE---------------YLAMNDSVIDLVRKFSNS 116 (219)
Q Consensus 83 ~~~~D~liipGG~~~~---------------~~~~~~~l~~~l~~~~~~ 116 (219)
...+|+||+.||.||- .+..++..+++|.+++.+
T Consensus 58 ~~r~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~~~~al~~i~~~~~~ 106 (255)
T COG1058 58 SERADVVITTGGLGPTHDDLTAEAVAKALGRPLVLDEEALAMIEEKYAK 106 (255)
T ss_pred HhCCCEEEECCCcCCCccHhHHHHHHHHhCCCcccCHHHHHHHHHHHHh
Confidence 2359999999999862 124567888899888874
No 178
>PRK13055 putative lipid kinase; Reviewed
Probab=65.29 E-value=9.8 Score=32.11 Aligned_cols=36 Identities=11% Similarity=-0.005 Sum_probs=23.8
Q ss_pred CEEEEEecCCCC----chhhHHHHHHHHhCCCeEEEecCC
Q 027785 9 RSVLLLCGDYME----DYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 9 ~kv~il~~~g~~----~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+|+.|++.|..- ...+......|+.+|+++.+....
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~ 42 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTT 42 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEee
Confidence 588888876322 123456677888999887765443
No 179
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=64.68 E-value=42 Score=26.56 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=43.7
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785 25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND 104 (219)
Q Consensus 25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~ 104 (219)
..+...|+..|++|++.+.+.. +..+++-...+||+||.-+-.+... -++
T Consensus 26 ~~~~~~L~~~gf~V~~~~~~d~----------------------------~~~~~~~~L~~~D~lV~~~~~~~~~--l~~ 75 (215)
T cd03142 26 GTIAAALAEYGFDVQTATLDEP----------------------------EHGLTEEVLAETDVLLWWGHIAHDE--VKD 75 (215)
T ss_pred HHHHHHHHhcCcEEEEEeccCc----------------------------cccCCHhHHhcCCEEEEeCCCCcCc--CCH
Confidence 3456678889999986644321 1223332346899999843322122 245
Q ss_pred HHHHHHHHHHhcCCeEEEEehhH
Q 027785 105 SVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 105 ~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
...+-++++.++|.=++++-.|.
T Consensus 76 eq~~~l~~~V~~GgGlv~lHsg~ 98 (215)
T cd03142 76 EIVERVHRRVLDGMGLIVLHSGH 98 (215)
T ss_pred HHHHHHHHHHHcCCCEEEECCCc
Confidence 55566666777787777777665
No 180
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=64.22 E-value=18 Score=31.70 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=32.8
Q ss_pred CccEEEEc-CCCCcccc--cCChHHHHHHHHHHhcCCe-EEEEehhHH-HHHhCcccCCceEeeCCC
Q 027785 85 KYDGLVIP-GGRAPEYL--AMNDSVIDLVRKFSNSGKT-IASICHGQL-ILAAADVVKGRKCTAYPP 146 (219)
Q Consensus 85 ~~D~liip-GG~~~~~~--~~~~~l~~~l~~~~~~~~~-v~~ic~G~~-~La~aGlL~g~~~t~~~~ 146 (219)
.+|+|||. ||.+.+++ -+++.+.+.|. +...| |.||+|=.= .|+ .+...+++.|...
T Consensus 192 ~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~---~~~~Pvis~IGHE~D~tl~--D~vAd~ra~TPta 253 (438)
T PRK00286 192 GEDVLIVARGGGSLEDLWAFNDEAVARAIA---ASRIPVISAVGHETDFTIA--DFVADLRAPTPTA 253 (438)
T ss_pred CCCEEEEecCCCCHHHhhccCcHHHHHHHH---cCCCCEEEeccCCCCccHH--HHhhhccCCChHH
Confidence 38999998 44444443 23455555544 44555 677887652 333 5556667666543
No 181
>PRK03673 hypothetical protein; Provisional
Probab=63.17 E-value=26 Score=30.46 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=50.2
Q ss_pred CEEEEEecC------CCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCC
Q 027785 9 RSVLLLCGD------YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID 82 (219)
Q Consensus 9 ~kv~il~~~------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 82 (219)
+|+.|+.-- ...+.....+...|...|+++...+.-++..+ .|. ..+...
T Consensus 2 ~~v~Iis~GdEll~G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~---------------------~i~--~~l~~a- 57 (396)
T PRK03673 2 LRVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLD---------------------ALV--AILRER- 57 (396)
T ss_pred CEEEEEEecccCCCCeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHH---------------------HHH--HHHHHH-
Confidence 377776631 22234556667778888988766544322100 011 112221
Q ss_pred CCCccEEEEcCCCCcc---------------cccCChHHHHHHHHHHhc
Q 027785 83 PTKYDGLVIPGGRAPE---------------YLAMNDSVIDLVRKFSNS 116 (219)
Q Consensus 83 ~~~~D~liipGG~~~~---------------~~~~~~~l~~~l~~~~~~ 116 (219)
...+|+||+.||.|+. .+..++...++|++++++
T Consensus 58 ~~~~DlVI~tGGlGpt~dD~t~~avA~a~g~~L~~d~e~~~~i~~~f~~ 106 (396)
T PRK03673 58 SQHADVLIVNGGLGPTSDDLSALAAATAAGEGLVLHEEWLAEMERFFAE 106 (396)
T ss_pred hccCCEEEEcCCCCCCCcccHHHHHHHHcCCCceeCHHHHHHHHHHHHh
Confidence 2469999999998752 124578899999988864
No 182
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=62.85 E-value=7.7 Score=29.29 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=30.1
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
.++|.|++.+|-+.-+-......|...|++|.++..
T Consensus 25 ~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp T-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEE
Confidence 579999999999999999999999999999988433
No 183
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=62.81 E-value=3.5 Score=30.77 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=28.3
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 82 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 82 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
+..+||.||| |.+-... .-.+.+..||++..-+||.|+-.|+
T Consensus 70 d~~~YD~I~l-G~PvW~~-~~~~pv~tFL~~~~~~gK~v~~F~T 111 (156)
T PF12682_consen 70 DLSDYDTIFL-GTPVWWG-TPPPPVRTFLEQYDFSGKTVIPFCT 111 (156)
T ss_dssp -GGG-SEEEE-EEEEETT-EE-CHHHHHHHCTTTTTSEEEEEEE
T ss_pred CcccCCEEEE-echHHcC-CCCHHHHHHHHhcCCCCCcEEEEEe
Confidence 4568999998 4432211 2356899999988778998888876
No 184
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=61.75 E-value=6.4 Score=34.50 Aligned_cols=43 Identities=19% Similarity=0.370 Sum_probs=31.0
Q ss_pred CCccEEEEcCCCCcc---cc-cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAPE---YL-AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~~---~~-~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
..|-.+||.||+..- .. .-++. .++-+.+|.+||.|.++++.-
T Consensus 58 ~~~rgiIiSGGP~SVya~dAP~~dp~-------if~~~vpvLGICYGmQ~i~~~ 104 (552)
T KOG1622|consen 58 YGPRGIIISGGPNSVYAEDAPSFDPA-------IFELGVPVLGICYGMQLINKL 104 (552)
T ss_pred CCceEEEEeCCCCccccCcCCCCChh-------HhccCCcceeehhHHHHHHHH
Confidence 468899999997532 22 22343 345579999999999999863
No 185
>PRK03670 competence damage-inducible protein A; Provisional
Probab=59.52 E-value=32 Score=27.92 Aligned_cols=73 Identities=22% Similarity=0.244 Sum_probs=43.1
Q ss_pred chhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcc--
Q 027785 21 DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPE-- 98 (219)
Q Consensus 21 ~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~-- 98 (219)
+.....+...|...|+++.....-++.. ..|. ..+...-...+|+||+.||.|+.
T Consensus 19 dtN~~~la~~L~~~G~~v~~~~iV~Dd~---------------------~~I~--~~l~~a~~~~~DlVIttGGlGpt~d 75 (252)
T PRK03670 19 DSNSAFIAQKLTEKGYWVRRITTVGDDV---------------------EEIK--SVVLEILSRKPEVLVISGGLGPTHD 75 (252)
T ss_pred ehhHHHHHHHHHHCCCEEEEEEEcCCCH---------------------HHHH--HHHHHHhhCCCCEEEECCCccCCCC
Confidence 4455667778888998876554322100 0011 11222111258999999997742
Q ss_pred -------------cccCChHHHHHHHHHHhc
Q 027785 99 -------------YLAMNDSVIDLVRKFSNS 116 (219)
Q Consensus 99 -------------~~~~~~~l~~~l~~~~~~ 116 (219)
.+..++...+.|++++++
T Consensus 76 D~T~eava~a~g~~l~~~~e~~~~i~~~~~~ 106 (252)
T PRK03670 76 DVTMLAVAEALGRELVLCEDCLERIKEFYEE 106 (252)
T ss_pred CchHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 135678888888888864
No 186
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=59.24 E-value=12 Score=30.25 Aligned_cols=50 Identities=12% Similarity=0.288 Sum_probs=41.9
Q ss_pred CCCccEEEEcCCCCccc--ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785 83 PTKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~ 132 (219)
....+.||+.||..... ...+-++.+-|++.+.+|..|++...|+.++..
T Consensus 104 v~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G~avgGTSAGAavM~~ 155 (293)
T COG4242 104 VENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRGIAVGGTSAGAAVMSD 155 (293)
T ss_pred HHhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcCceecccccchhhcCC
Confidence 35789999999976532 456889999999999999999999999988764
No 187
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=59.23 E-value=12 Score=31.20 Aligned_cols=53 Identities=30% Similarity=0.473 Sum_probs=34.6
Q ss_pred CccCCCCCCccEEEEcCCCCc----ccccCChHHHHHHHHHHhcCCeEEEEehhHHH
Q 027785 77 TFDEIDPTKYDGLVIPGGRAP----EYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129 (219)
Q Consensus 77 ~~~~~~~~~~D~liipGG~~~----~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~ 129 (219)
+++++....||.+||.|.+-. +...--+++.+.+....++......+|-|+.+
T Consensus 90 ~~~~i~~~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqA 146 (298)
T PF04204_consen 90 TFDEIKDRKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQA 146 (298)
T ss_dssp -HHHCTTS-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHH
T ss_pred CHHHHhhCCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHH
Confidence 466666678999999997521 11222356777777777778899999999986
No 188
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=59.20 E-value=15 Score=26.70 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=28.0
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHH--hcCCeEEEEehhH
Q 027785 82 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFS--NSGKTIASICHGQ 127 (219)
Q Consensus 82 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~--~~~~~v~~ic~G~ 127 (219)
+..+||+||+.++.-.. .-.+.+.+||++.. -++++++.++.|.
T Consensus 40 ~~~~yD~vi~gspiy~g--~~~~~~~~fi~~~~~~l~~k~v~~f~~~~ 85 (143)
T PF12724_consen 40 DLSDYDAVIFGSPIYAG--RIPGEMREFIKKNKDNLKNKKVALFSVGG 85 (143)
T ss_pred ccccCCEEEEEEEEECC--cCCHHHHHHHHHHHHHHcCCcEEEEEEeC
Confidence 45689999996653222 24567889998754 3566666555543
No 189
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=59.17 E-value=68 Score=25.54 Aligned_cols=84 Identities=17% Similarity=0.184 Sum_probs=51.6
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceE---eeCCCCHHHHH----HCC
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKC---TAYPPVKPVLI----AAG 155 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~---t~~~~~~~~l~----~~g 155 (219)
...+|+++|..- .+ +..+-+|+.+ ++||.++|.++...|.. -|||+ |+.+...+.++ .+|
T Consensus 67 ~~GvdaiiIaCf-------~D-Pgl~~~Re~~--~~PviGi~eAsv~~A~~---vgrrfsViTtt~rs~~il~~lv~~~g 133 (230)
T COG4126 67 EQGVDAIIIACF-------SD-PGLAAARERA--AIPVIGICEASVLAALF---VGRRFSVITTTERSRPILEELVRSYG 133 (230)
T ss_pred ccCCcEEEEEec-------CC-hHHHHHHHHh--CCCceehhHHHHHHHHH---hcceEEEEecCcccHHHHHHHHHhcC
Confidence 345899998641 23 7778888877 78999999999877743 67775 45555544443 344
Q ss_pred CeEecCCCcceEEEcCCeEeCCCCCCH
Q 027785 156 ASWIEPETMAACVVDGNIITGATYEGH 182 (219)
Q Consensus 156 ~~~~~~~~~~~~v~dg~liT~~g~~s~ 182 (219)
....... ..-.|..+.+=.++.+-
T Consensus 134 ~s~~~~~---vrstdl~vL~l~~~~~~ 157 (230)
T COG4126 134 LSRHCRS---VRSTDLPVLALEGPPEE 157 (230)
T ss_pred ccccccc---eeeCCCCcccccCChHH
Confidence 2222111 13346666666664333
No 190
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=58.94 E-value=19 Score=29.15 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=30.7
Q ss_pred CCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 81 IDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 81 ~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
.++.++|++++.||.| .++..++.+...+.||.+|-.|..
T Consensus 21 ~~~~~~Dlvi~iGGDG--------TlL~a~~~~~~~~~PvlGIN~G~l 60 (246)
T PRK04761 21 VPIEEADVIVALGGDG--------FMLQTLHRYMNSGKPVYGMNRGSV 60 (246)
T ss_pred CCcccCCEEEEECCCH--------HHHHHHHHhcCCCCeEEEEeCCCC
Confidence 3456799999999865 456667777777889999988874
No 191
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=58.57 E-value=60 Score=22.61 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=31.7
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
.+-|++|+.+-.| .++.+.++++.+.++|.++.+++...
T Consensus 46 ~~~d~vi~iS~sG-----~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 46 TPGDVVIAISNSG-----ETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3568888876544 57899999999999999999998854
No 192
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=58.02 E-value=20 Score=32.05 Aligned_cols=38 Identities=8% Similarity=0.068 Sum_probs=23.6
Q ss_pred CCCEEEEEecCCC---Cchhh-H-HHHHHHHhCCCeEEEecCC
Q 027785 7 GKRSVLLLCGDYM---EDYEA-M-VPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 7 ~~~kv~il~~~g~---~~~e~-~-~~~~~l~~ag~~v~~~s~~ 44 (219)
++||+.|++.|.. ..... . .....|+.++++++++-..
T Consensus 110 ~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~ 152 (481)
T PLN02958 110 RPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETK 152 (481)
T ss_pred CCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEecc
Confidence 3679998887621 11222 2 3445888999988776544
No 193
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.75 E-value=39 Score=24.48 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=32.8
Q ss_pred CCccEEEEcCCCCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcc
Q 027785 84 TKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV 135 (219)
Q Consensus 84 ~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGl 135 (219)
...|++++-||... ..-...+...+++.+. .++.+.++|-= .+..++|.
T Consensus 84 n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~--~~kkliGvCfm-~mF~ragW 133 (154)
T COG4090 84 NSADVVVLLGGLAMPKIGVTPDDAKELLEEL--GNKKLIGVCFM-NMFERAGW 133 (154)
T ss_pred ccccEEEEEcccccCcCCCCHHHHHHHHHhc--CCCceEEeeHH-HHHHHcCc
Confidence 35899999999864 2223345566776633 35679999984 46777764
No 194
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=57.24 E-value=24 Score=23.45 Aligned_cols=71 Identities=27% Similarity=0.406 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCeEEEEehhHH-HHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEEc--CCeE---eCCCCC
Q 027785 107 IDLVRKFSNSGKTIASICHGQL-ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVD--GNII---TGATYE 180 (219)
Q Consensus 107 ~~~l~~~~~~~~~v~~ic~G~~-~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~d--g~li---T~~g~~ 180 (219)
.+++++.+.+...+..+|.--. +=.-+.+|.+|. .++. .++.| |+.+ .++-..
T Consensus 2 ~~~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~------------------~DPa---Vvvvde~g~~vIplL~GH~G 60 (84)
T PF11760_consen 2 KDLLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKD------------------TDPA---VVVVDEDGRFVIPLLGGHRG 60 (84)
T ss_dssp ---HHHHCCC-SEEEEES-HHHHHHHHHHH---TT------------------T--E---EEEE-TT--EEEEEE-TTTT
T ss_pred hhHHHHHHcCCCeEEEEeCcHHHHHHhChhhcccC------------------CCCC---EEEEeCCCCEEEEeccCCcc
Confidence 4678899998888888886443 333346665532 2222 13333 4443 444455
Q ss_pred CHHHHHHHHHHHHccccc
Q 027785 181 GHPEFIRLFLKALGGTIT 198 (219)
Q Consensus 181 s~~~~~l~li~~l~~~~~ 198 (219)
.+.+++..+.+.+++...
T Consensus 61 Gan~lA~~iA~~lga~~V 78 (84)
T PF11760_consen 61 GANELARQIAELLGAQPV 78 (84)
T ss_dssp -HHHHHHHHHHHTT-EE-
T ss_pred hHHHHHHHHHHHhCCEEE
Confidence 589999999999888754
No 195
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=56.74 E-value=20 Score=25.90 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=28.4
Q ss_pred CCCccEEEEcCCC-CcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 83 PTKYDGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 83 ~~~~D~liipGG~-~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
..+||.++|.... +... ..+.+..|+.+...++|.++.+++|
T Consensus 48 ~~~~d~iilgs~t~~~g~--~p~~~~~fl~~l~~~~k~~avfgtg 90 (140)
T TIGR01754 48 PENYDLVFLGTWTWERGR--TPDEMKDFIAELGYKPSNVAIFGTG 90 (140)
T ss_pred hhhCCEEEEEcCeeCCCc--CCHHHHHHHHHhcccCCEEEEEEcC
Confidence 3479999886542 2221 2357888888776688888888876
No 196
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=56.56 E-value=34 Score=24.85 Aligned_cols=38 Identities=18% Similarity=-0.010 Sum_probs=27.1
Q ss_pred CCEEEEEec-CCCCchhhHHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCG-DYMEDYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
.+||.+... ..............|+.+||++..+..+-
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~v 41 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMT 41 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 456655544 34555677778888999999999987654
No 197
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=55.74 E-value=19 Score=29.47 Aligned_cols=37 Identities=5% Similarity=-0.084 Sum_probs=24.7
Q ss_pred CEEEEEecC--CCC--chhhHHHHHHHHhCCCeEEEecCCC
Q 027785 9 RSVLLLCGD--YME--DYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 9 ~kv~il~~~--g~~--~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
+|++|++-+ |-. ...+..+...|...|+++.+.....
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~ 42 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWE 42 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 589998877 432 2234456777888898887765543
No 198
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=55.50 E-value=34 Score=25.57 Aligned_cols=36 Identities=19% Similarity=0.051 Sum_probs=30.9
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+|++|++.||.+..++..+...|+.+|..+-.++..
T Consensus 107 ~kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~ 142 (165)
T cd01481 107 PQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGAR 142 (165)
T ss_pred CeEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC
Confidence 589999999999888999999999999877666553
No 199
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.36 E-value=94 Score=28.46 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=29.5
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH-HHH
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL-ILA 131 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~-~La 131 (219)
+.|++|+.||.| .++.-.+.+...+.||.+|-.|.. +|+
T Consensus 348 ~~dlvi~lGGDG--------T~L~aa~~~~~~~~PilGin~G~lGFL~ 387 (569)
T PRK14076 348 EISHIISIGGDG--------TVLRASKLVNGEEIPIICINMGTVGFLT 387 (569)
T ss_pred CCCEEEEECCcH--------HHHHHHHHhcCCCCCEEEEcCCCCCcCc
Confidence 589999999865 455566666667899999999885 444
No 200
>PRK06703 flavodoxin; Provisional
Probab=55.23 E-value=35 Score=24.84 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=21.6
Q ss_pred CCccEEEEcCCC-Cccccc-CChHHHHHHHHHHhcCCeEEEEehh
Q 027785 84 TKYDGLVIPGGR-APEYLA-MNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~-~~~~~~-~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
.++|.|+|.... +...++ .-..+.+++++..-+++.++.++.|
T Consensus 47 ~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g 91 (151)
T PRK06703 47 LAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSG 91 (151)
T ss_pred hcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccC
Confidence 468888885421 211111 1123444444333457777777665
No 201
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=54.86 E-value=50 Score=27.07 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=27.1
Q ss_pred CCEEEEEecCCCCc-----hhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYMED-----YEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~~-----~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
++||+|+.-....+ .....+.+.|++.|+++..+...
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 46899888443333 34478889999999999998654
No 202
>PRK01215 competence damage-inducible protein A; Provisional
Probab=53.74 E-value=43 Score=27.35 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=48.7
Q ss_pred CCEEEEEec-CC-----CCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCC
Q 027785 8 KRSVLLLCG-DY-----MEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI 81 (219)
Q Consensus 8 ~~kv~il~~-~g-----~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~ 81 (219)
++|++|+.. +. ..+.....+...|...|+++.....-++.. ..|. ..+...
T Consensus 3 ~~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~---------------------~~I~--~~l~~a 59 (264)
T PRK01215 3 KWFAWIITIGNELLIGRTVNTNASWIARRLTYLGYTVRRITVVMDDI---------------------EEIV--SAFREA 59 (264)
T ss_pred CCEEEEEEEChhccCCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCH---------------------HHHH--HHHHHH
Confidence 458988864 21 123344566777888998876554322100 0010 112222
Q ss_pred CCCCccEEEEcCCCCcc---------------cccCChHHHHHHHHHHhc
Q 027785 82 DPTKYDGLVIPGGRAPE---------------YLAMNDSVIDLVRKFSNS 116 (219)
Q Consensus 82 ~~~~~D~liipGG~~~~---------------~~~~~~~l~~~l~~~~~~ 116 (219)
...+|+||+.||.|+. .+..++...++|++++++
T Consensus 60 -~~~~DlVIttGG~g~t~dD~t~eaia~~~g~~l~~~~e~~~~l~~~~~~ 108 (264)
T PRK01215 60 -IDRADVVVSTGGLGPTYDDKTNEGFAKALGVELELNEDALRMILEKYEK 108 (264)
T ss_pred -hcCCCEEEEeCCCcCChhhhHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Confidence 1357999999998742 124567888888877764
No 203
>PRK13337 putative lipid kinase; Reviewed
Probab=53.47 E-value=20 Score=29.65 Aligned_cols=36 Identities=11% Similarity=0.025 Sum_probs=23.3
Q ss_pred CEEEEEecCCCC----chhhHHHHHHHHhCCCeEEEecCC
Q 027785 9 RSVLLLCGDYME----DYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 9 ~kv~il~~~g~~----~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+|+.|++.|..- ...+......|+++|+++++....
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~ 41 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATT 41 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 588888876322 123445566788899887776554
No 204
>PRK05569 flavodoxin; Provisional
Probab=53.28 E-value=80 Score=22.50 Aligned_cols=42 Identities=10% Similarity=0.102 Sum_probs=25.0
Q ss_pred CCccEEEEcCCC-CcccccCChHHHHHHHHHH---hcCCeEEEEehh
Q 027785 84 TKYDGLVIPGGR-APEYLAMNDSVIDLVRKFS---NSGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~-~~~~~~~~~~l~~~l~~~~---~~~~~v~~ic~G 126 (219)
.++|.|++.... +... ...+.+..|+.++. -++|.++.++++
T Consensus 47 ~~~d~iilgsPty~~~~-~~~~~~~~~~~~l~~~~~~~K~v~~f~t~ 92 (141)
T PRK05569 47 LEADAVAFGSPSMDNNN-IEQEEMAPFLDQFKLTPNENKKCILFGSY 92 (141)
T ss_pred hhCCEEEEECCCcCCCc-CChHHHHHHHHHhhccCcCCCEEEEEeCC
Confidence 479999985432 1111 11245666666654 368888888864
No 205
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=52.89 E-value=29 Score=26.65 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=30.8
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 82 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 82 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
++.++|+++|.|... ......++.+.++..+-|+|.++++
T Consensus 72 sPR~ADillVeG~VT----~~m~~~l~~~~e~~p~pK~VIAvGa 111 (181)
T PRK14817 72 SPRQADLLMVVGTVN----CKQAPILQRVYEQMADPKWVMAFGV 111 (181)
T ss_pred CCcceeEEEEEecCC----ccchHHHHHHHHHcccCCEEEEecc
Confidence 567899999998652 2345677888888889999998865
No 206
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=52.56 E-value=21 Score=25.68 Aligned_cols=41 Identities=10% Similarity=0.228 Sum_probs=33.1
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
.+.|+++|-|+-. ..+....++++++.++.+.|.++++=+.
T Consensus 44 ~~~diliVeG~v~----~~~~~~~e~~~~~~~~a~~vIAvGtCA~ 84 (131)
T PF01058_consen 44 EEADILIVEGSVP----RNMEEALEWLKELRPKAKAVIAVGTCAS 84 (131)
T ss_dssp TTTEEEEEESBEE----TGGEEHHHHHHHHHGCSSEEEEEHHHHH
T ss_pred cCceEEEEEeecc----CCchHHHHHHHHHccCCceeEcCCCccc
Confidence 4799999988642 1346789999999999999999988664
No 207
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=52.12 E-value=46 Score=23.11 Aligned_cols=29 Identities=21% Similarity=0.058 Sum_probs=21.8
Q ss_pred cCCCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 16 GDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 16 ~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
........+..+...|+..||++..+...
T Consensus 8 ~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 8 GGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 34556677788889999999999776543
No 208
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=50.49 E-value=40 Score=29.71 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=33.6
Q ss_pred CCccEEEEcCCCC-ccccc--CChHHHHHHHHHHhcCCe-EEEEehhH-HHHHhCcccCCceEeeCCC
Q 027785 84 TKYDGLVIPGGRA-PEYLA--MNDSVIDLVRKFSNSGKT-IASICHGQ-LILAAADVVKGRKCTAYPP 146 (219)
Q Consensus 84 ~~~D~liipGG~~-~~~~~--~~~~l~~~l~~~~~~~~~-v~~ic~G~-~~La~aGlL~g~~~t~~~~ 146 (219)
.++|+|||.=|.| .++++ +++.+ .+..++...| |-+|+|-+ +.|+ .+..+.++.|...
T Consensus 192 ~~~DvlIVaRGGGSiEDLW~FNdE~v---aRAi~~s~iPvISAVGHEtD~tL~--DfVAD~RApTPTa 254 (440)
T COG1570 192 GDVDVLIVARGGGSIEDLWAFNDEIV---ARAIAASRIPVISAVGHETDFTLA--DFVADLRAPTPTA 254 (440)
T ss_pred CCCCEEEEecCcchHHHHhccChHHH---HHHHHhCCCCeEeecccCCCccHH--HhhhhccCCCchH
Confidence 4699999984444 34432 23333 4566666666 56677766 2333 4556666666443
No 209
>PRK06934 flavodoxin; Provisional
Probab=49.92 E-value=15 Score=29.23 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=31.5
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 82 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 82 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
+..+||.|+| |.+-+.. .-.+.+..||.+..-.||.|+.+|+-
T Consensus 126 dl~~YD~I~I-G~PIWwg-~~P~~V~tFLe~~d~~GK~I~pF~T~ 168 (221)
T PRK06934 126 NLADYDQIFI-GYPIWWY-KMPMVMYSFFEQHDFSGKTLIPFTTH 168 (221)
T ss_pred hHHhCCEEEE-Ecchhhc-cccHHHHHHHHhcCCCCCEEEEEEec
Confidence 3458999998 4443211 23578999999888889999999973
No 210
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=49.74 E-value=34 Score=26.32 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=29.0
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 82 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 82 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
++.+.|+++|.|.... .....+..+.++..+-|+|.++++
T Consensus 71 sPr~aDvllV~G~vt~----~~~~~l~~~~e~mp~pk~VIA~Ga 110 (183)
T PRK06411 71 SPRQADLMIVAGTLTN----KMAPALRRLYDQMPEPKWVISMGS 110 (183)
T ss_pred CCCceeEEEEEeCCCc----cchHHHHHHHHHcCcCCeEEEEec
Confidence 4668999999987532 235566666677777899988865
No 211
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=49.60 E-value=43 Score=23.60 Aligned_cols=29 Identities=28% Similarity=0.014 Sum_probs=22.1
Q ss_pred cCCCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 16 GDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 16 ~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
..+............|+.+||++......
T Consensus 8 ~gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 8 GLDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 34455566777888899999999888765
No 212
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=49.58 E-value=47 Score=25.68 Aligned_cols=78 Identities=14% Similarity=0.039 Sum_probs=48.3
Q ss_pred CEEEEEecC-CCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 9 RSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 9 ~kv~il~~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
.||.+...+ +............|+.+||++..+..+-.+ +.-.+.+.-..+|
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~---------------------------e~~v~~~~~~~pd 137 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPI---------------------------DTVVEKVKKEKPL 137 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCH---------------------------HHHHHHHHHcCCC
Confidence 466555544 566677888889999999999998765421 1112222234789
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcC
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSG 117 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~ 117 (219)
+|.+..... ...+.+.++++...+.+
T Consensus 138 ~v~lS~~~~----~~~~~~~~~i~~l~~~~ 163 (197)
T TIGR02370 138 MLTGSALMT----TTMYGQKDINDKLKEEG 163 (197)
T ss_pred EEEEccccc----cCHHHHHHHHHHHHHcC
Confidence 888865332 22345666666666664
No 213
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=49.55 E-value=86 Score=24.12 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=49.4
Q ss_pred CEEEEEecCCCC--chhhHHHHHHHHh-CCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccc---cccCccCCC
Q 027785 9 RSVLLLCGDYME--DYEAMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFA---LNATFDEID 82 (219)
Q Consensus 9 ~kv~il~~~g~~--~~e~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~---~~~~~~~~~ 82 (219)
+||+|+-+...- ..=+-.+.+.+.+ .|.+++++........ .+....+.... +...++++
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l- 67 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPE-------------EVAKKAGGKTDQAAPVATPDEL- 67 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCH-------------HHHHhcCCCcccCCCccCHHHH-
Confidence 378888865432 2223334555665 7888888766421100 00000010000 00113333
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHh-------cCCeEEEEehh
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN-------SGKTIASICHG 126 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~-------~~~~v~~ic~G 126 (219)
.++|.|++....-. -...+.+..|+.+... .+|+++.++++
T Consensus 68 -~~aD~ii~gsPty~--g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~ 115 (200)
T PRK03767 68 -ADYDAIIFGTPTRF--GNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTST 115 (200)
T ss_pred -HhCCEEEEEecccC--CCchHHHHHHHHHhccccccCCccCCEEEEEEeC
Confidence 47999888543211 1234667777777532 26666666664
No 214
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=49.13 E-value=90 Score=29.16 Aligned_cols=97 Identities=15% Similarity=0.120 Sum_probs=53.4
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
.++|+|--..+ ........|+..|+++..+..-. +...... -..+..+.++ .+||
T Consensus 3 ~~~VLVTRp~~----qa~~la~~L~~~G~~vi~~Pli~------------------i~p~~~~-~~l~~~l~~L--~~yd 57 (656)
T PRK06975 3 AFTVVVTRPDG----QSAALAAQLAAAGLDVLDFPLLD------------------IAPVADD-APLRAALARL--SDYA 57 (656)
T ss_pred CCEEEEeCcHh----HHHHHHHHHHHcCCCEEEcccEE------------------eeCCCCh-HHHHHHHHhC--CCCC
Confidence 45777766654 44666778889998876652210 0000000 0001112333 4899
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH-HHHhCcc
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL-ILAAADV 135 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~-~La~aGl 135 (219)
+||+....+... +.+.++.....+.++++|+.++. .|.+.|+
T Consensus 58 ~iIFTS~nAV~~------~~~~l~~~~~~~~~i~AVG~~Ta~aL~~~Gi 100 (656)
T PRK06975 58 LVVFVSPNAVDR------ALARLDAIWPHALPVAVVGPGSVAALARHGI 100 (656)
T ss_pred EEEEECHHHHHH------HHHHHHhhCccCCeEEEECHHHHHHHHHcCC
Confidence 999998766543 12222222234667888988887 5666665
No 215
>PRK13059 putative lipid kinase; Reviewed
Probab=47.91 E-value=31 Score=28.45 Aligned_cols=36 Identities=14% Similarity=-0.031 Sum_probs=23.5
Q ss_pred CEEEEEecCCCC----chhhHHHHHHHHhCCCeEEEecCC
Q 027785 9 RSVLLLCGDYME----DYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 9 ~kv~il~~~g~~----~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+|+.|++.|..- ..++......|+++|+++.+....
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~ 41 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRIS 41 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEcc
Confidence 478887766322 234455677888999987765544
No 216
>PF07505 Gp37_Gp68: Phage protein Gp37/Gp68; InterPro: IPR011101 This entry is represented by Burkholderia phage phiE125, Gp37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=47.70 E-value=1.6e+02 Score=24.16 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=27.6
Q ss_pred CCCCCccEEEEcCCCCcccccCChHHHHHHHHHH-hcCCeEEEEehh
Q 027785 81 IDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFS-NSGKTIASICHG 126 (219)
Q Consensus 81 ~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~-~~~~~v~~ic~G 126 (219)
.+....|.||+-|-.|+..-+-++.-..-|++++ +++.++..--.|
T Consensus 184 ~~~~~IdWVIvGGESG~~ARp~~~~Wvr~irdqC~~~gvpFffKQwG 230 (261)
T PF07505_consen 184 LDLEGIDWVIVGGESGPGARPMHPDWVRSIRDQCAAAGVPFFFKQWG 230 (261)
T ss_pred ccCCCCCEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 3445789999865455433234555444444444 567778777777
No 217
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=47.65 E-value=83 Score=25.64 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=32.6
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (219)
.+||++--=||+....+..+.+.|+..| +|.+++|...
T Consensus 5 ~M~ILltNDDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 42 (257)
T PRK13932 5 KPHILVCNDDGIEGEGIHVLAASMKKIG-RVTVVAPAEP 42 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHhCC-CEEEEcCCCC
Confidence 3577777778999999999999999887 8999999764
No 218
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=47.64 E-value=1.8e+02 Score=26.25 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=27.5
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
++|++|+.||.|. ++.-.+.+.....||.+|-.|..
T Consensus 262 ~~DlVIsiGGDGT--------lL~Aar~~~~~~iPILGIN~G~L 297 (508)
T PLN02935 262 KVDLVITLGGDGT--------VLWAASMFKGPVPPVVPFSMGSL 297 (508)
T ss_pred CCCEEEEECCcHH--------HHHHHHHhccCCCcEEEEeCCCc
Confidence 6899999998663 45555666667889999988865
No 219
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=47.22 E-value=40 Score=26.67 Aligned_cols=35 Identities=9% Similarity=-0.041 Sum_probs=22.7
Q ss_pred EEEEEecC---CCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 10 SVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 10 kv~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+|++++.. .|...-+.++.+.+++.|+++.+....
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 38 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDAG 38 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 47888752 333334456667788889998886543
No 220
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=47.08 E-value=46 Score=25.89 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=32.0
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (219)
|||++--=||+....+..+.+.|++.|.+|.+++|...
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALGHDVVVVAPDSE 38 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTSSEEEEEEESSS
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 37888888999999999999999888899999999764
No 221
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=46.66 E-value=27 Score=26.18 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=26.1
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
..+||.|++-.+.- .-..++.+.+||++.. +|.|+..++
T Consensus 37 ~~~yD~i~lG~w~d--~G~~d~~~~~fl~~l~--~KkV~lF~T 75 (160)
T PF12641_consen 37 LEDYDLIFLGFWID--KGTPDKDMKEFLKKLK--GKKVALFGT 75 (160)
T ss_pred CCCCCEEEEEcCcc--CCCCCHHHHHHHHHcc--CCeEEEEEe
Confidence 36899999955532 2245789999999965 455554444
No 222
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=46.59 E-value=45 Score=24.57 Aligned_cols=90 Identities=13% Similarity=0.144 Sum_probs=49.3
Q ss_pred CCEEEEEecCCCCc---hhhHHHHHHHHhCCC---eEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCC
Q 027785 8 KRSVLLLCGDYMED---YEAMVPFQALLAFGV---SVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI 81 (219)
Q Consensus 8 ~~kv~il~~~g~~~---~e~~~~~~~l~~ag~---~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~ 81 (219)
+.||+|+....... .=+....+.|...|. +++++...+ ..-+++....-+..
T Consensus 3 ~~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPG---------------------a~ElP~a~~~l~~~- 60 (144)
T PF00885_consen 3 GLRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPG---------------------AFELPLAAKRLAES- 60 (144)
T ss_dssp TEEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESS---------------------GGGHHHHHHHHHHC-
T ss_pred CCEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCC---------------------HHHHHHHHHHHhcc-
Confidence 56999999874332 222346777888886 677765433 11222322332322
Q ss_pred CCCCccEEEEcCC--CCc--c-cccCChHHHHHHHHHHhcCCeEE
Q 027785 82 DPTKYDGLVIPGG--RAP--E-YLAMNDSVIDLVRKFSNSGKTIA 121 (219)
Q Consensus 82 ~~~~~D~liipGG--~~~--~-~~~~~~~l~~~l~~~~~~~~~v~ 121 (219)
.+||+++..|- .|. . .+-.+.....+.+-..+.++||.
T Consensus 61 --~~~Davi~lG~VI~G~T~H~~~v~~~v~~gl~~lsl~~~~PV~ 103 (144)
T PF00885_consen 61 --GRYDAVIALGCVIRGETDHFEYVANAVSRGLMDLSLEYGIPVI 103 (144)
T ss_dssp --STESEEEEEEEEE--SSTHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred --cCccEEEEeccccCCCchHHHHHHHHHHHHHHHHhccCCccEE
Confidence 36999999883 232 1 11223344555555567788865
No 223
>PLN02929 NADH kinase
Probab=46.55 E-value=1.1e+02 Score=25.54 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=26.2
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
.+.|++|+.||.|. ++...+.+ ..+.||.+|-.|+
T Consensus 63 ~~~Dlvi~lGGDGT--------~L~aa~~~-~~~iPvlGIN~Gp 97 (301)
T PLN02929 63 RDVDLVVAVGGDGT--------LLQASHFL-DDSIPVLGVNSDP 97 (301)
T ss_pred CCCCEEEEECCcHH--------HHHHHHHc-CCCCcEEEEECCC
Confidence 46899999998763 44444555 6789999999983
No 224
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=46.52 E-value=64 Score=27.07 Aligned_cols=47 Identities=23% Similarity=0.342 Sum_probs=36.9
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHH
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La 131 (219)
..+.|++++.|..-+ .+ ......+|++...++++.++-=|+|..+.+
T Consensus 127 l~~~d~VvlsGSlP~-g~-~~d~y~~li~~~~~~g~~vilD~Sg~~L~~ 173 (310)
T COG1105 127 LESDDIVVLSGSLPP-GV-PPDAYAELIRILRQQGAKVILDTSGEALLA 173 (310)
T ss_pred cccCCEEEEeCCCCC-CC-CHHHHHHHHHHHHhcCCeEEEECChHHHHH
Confidence 457899888876422 22 356788999999999999999999998876
No 225
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.33 E-value=31 Score=21.00 Aligned_cols=28 Identities=18% Similarity=0.057 Sum_probs=23.7
Q ss_pred EEecCCCCchhhHHHHHHHHhCCCeEEE
Q 027785 13 LLCGDYMEDYEAMVPFQALLAFGVSVDA 40 (219)
Q Consensus 13 il~~~g~~~~e~~~~~~~l~~ag~~v~~ 40 (219)
++++.|++..++..+++.+++.|..+.+
T Consensus 3 ~ll~~g~~~~el~~~l~~~r~~~~~~~~ 30 (58)
T PF12646_consen 3 FLLFSGFSGEELDKFLDALRKAGIPIPL 30 (58)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCCcce
Confidence 5778899999999999999999874433
No 226
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=45.91 E-value=86 Score=29.29 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=60.7
Q ss_pred EEEEEecCCC----------------CchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccc
Q 027785 10 SVLLLCGDYM----------------EDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFA 73 (219)
Q Consensus 10 kv~il~~~g~----------------~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 73 (219)
||+||-..|- +..++.++++.|.-+.++|+++|=+. |.
T Consensus 440 kvavLn~WG~~RsW~~~~v~ha~~ykq~ysy~GvlE~LSG~p~dV~FisFdD--------------------------i~ 493 (719)
T TIGR02336 440 KVAVLNSWGKMRSWMAFQVAHALPYKQTYSYYGILECLSGMPVEVEFISFDD--------------------------IL 493 (719)
T ss_pred eEEEEecccccchHhhhhhhhhhhhhhhhhHHHHHHHhcCCCeeEEEecHHH--------------------------Hh
Confidence 8999985432 33566777788877888888886542 00
Q ss_pred cccCccCCCCCCccEEEEcCCCCc----ccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 74 LNATFDEIDPTKYDGLVIPGGRAP----EYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 74 ~~~~~~~~~~~~~D~liipGG~~~----~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
.+ .+ +.+.|+||=.|..+. .....++.+...|+++.++|.-+.+++.-.
T Consensus 494 ~~----gi-~~didViIN~G~a~ta~SGG~~W~d~~~~~aLr~fV~~GGglIGVgDps 546 (719)
T TIGR02336 494 EH----GI-DSDIDVIINGGDADTAWSGGDVWTNPKLVETVRAWVRGGGGFVGVGEPS 546 (719)
T ss_pred hc----CC-CcCCcEEEecCcccccccCccccCCHHHHHHHHHHHHcCCeEEEEECCc
Confidence 01 11 357889888775432 124668999999999999999888888754
No 227
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=45.77 E-value=35 Score=26.41 Aligned_cols=36 Identities=17% Similarity=0.021 Sum_probs=25.9
Q ss_pred CEEEEEecC-CCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 9 RSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 9 ~kv~il~~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
.||.+...+ .............|+.+||++..+..+
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 466666655 444456778889999999999777654
No 228
>PRK06242 flavodoxin; Provisional
Probab=45.01 E-value=38 Score=24.47 Aligned_cols=44 Identities=23% Similarity=0.337 Sum_probs=29.6
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHh-cCCeEEEEehhHH
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN-SGKTIASICHGQL 128 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~-~~~~v~~ic~G~~ 128 (219)
..++|.|++....- .....+.+.+||.+... ++|+++.+|++.+
T Consensus 41 ~~~~d~ii~g~pvy--~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~ 85 (150)
T PRK06242 41 LSEYDLIGFGSGIY--FGKFHKSLLKLIEKLPPVSGKKAFIFSTSGL 85 (150)
T ss_pred HhHCCEEEEeCchh--cCCcCHHHHHHHHhhhhhcCCeEEEEECCCC
Confidence 35899999854311 12245778888887654 6888888887654
No 229
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=44.73 E-value=1.8e+02 Score=23.95 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=30.2
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
...+|++++-||.| .++...+.+.+.+.+|.++-.|..
T Consensus 53 ~~~~d~ivvlGGDG--------tlL~~~~~~~~~~~pilgin~G~l 90 (281)
T COG0061 53 EEKADLIVVLGGDG--------TLLRAARLLARLDIPVLGINLGHL 90 (281)
T ss_pred ccCceEEEEeCCcH--------HHHHHHHHhccCCCCEEEEeCCCc
Confidence 36799999988754 567777888888899999999954
No 230
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=44.71 E-value=47 Score=27.72 Aligned_cols=57 Identities=25% Similarity=0.313 Sum_probs=31.5
Q ss_pred CCccEEEEc-CCCCccccc--CChHHHHHHHHHHhcCCe-EEEEehhHH-HHHhCcccCCceEeeCC
Q 027785 84 TKYDGLVIP-GGRAPEYLA--MNDSVIDLVRKFSNSGKT-IASICHGQL-ILAAADVVKGRKCTAYP 145 (219)
Q Consensus 84 ~~~D~liip-GG~~~~~~~--~~~~l~~~l~~~~~~~~~-v~~ic~G~~-~La~aGlL~g~~~t~~~ 145 (219)
.+||+|+|. ||.+.+++. +++.+.+-| ++...| |.||+|-.= .|+ .+...+++.|..
T Consensus 74 ~~~Dviii~RGGGs~eDL~~FN~e~varai---~~~~~PvisaIGHe~D~ti~--D~vAd~ra~TPt 135 (319)
T PF02601_consen 74 DDFDVIIIIRGGGSIEDLWAFNDEEVARAI---AASPIPVISAIGHETDFTIA--DFVADLRAPTPT 135 (319)
T ss_pred ccccEEEEecCCCChHHhcccChHHHHHHH---HhCCCCEEEecCCCCCchHH--HHHHHhhCCCHH
Confidence 369999998 444334432 345555444 443444 677777652 222 445555665543
No 231
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=44.54 E-value=46 Score=25.53 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=30.4
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 82 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 82 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
++.++|+++|-|.-. ......++.++++..+-|+|.++++
T Consensus 70 sPR~aDillVeG~VT----~~m~~~l~~~~e~~p~pk~VIAvGa 109 (180)
T PRK14820 70 SPRQADMLMVMGTIA----KKMAPVLKQVYLQMAEPRWVVAVGA 109 (180)
T ss_pred CCccceEEEEEecCC----cccHHHHHHHHHhcCCCCeEEEEec
Confidence 467899999998642 2346777777777779999998865
No 232
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=44.16 E-value=64 Score=26.94 Aligned_cols=37 Identities=5% Similarity=-0.089 Sum_probs=28.4
Q ss_pred CCEEEEEec---CCCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCG---DYMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~---~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+++|++++. +.|...-+.++.+.+...|+++.+....
T Consensus 25 ~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~ 64 (330)
T PRK10355 25 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSAN 64 (330)
T ss_pred CceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 578999996 3455566777788888899999887654
No 233
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=44.16 E-value=21 Score=24.74 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=26.5
Q ss_pred EEEEEec-CCCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 10 SVLLLCG-DYMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 10 kv~il~~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
|+.+... .......+..+...|+++|+++.++...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 4444444 4556789999999999999999988554
No 234
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=44.02 E-value=1.1e+02 Score=25.31 Aligned_cols=39 Identities=10% Similarity=0.138 Sum_probs=25.2
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
..+|+|||+--. .....+.+.++.....+..|..+.+|.
T Consensus 71 ~~~D~vilavK~-----~~~~~~~~~l~~~~~~~~~iv~lqNG~ 109 (313)
T PRK06249 71 PPCDWVLVGLKT-----TANALLAPLIPQVAAPDAKVLLLQNGL 109 (313)
T ss_pred CCCCEEEEEecC-----CChHhHHHHHhhhcCCCCEEEEecCCC
Confidence 578999986311 123456667776666666777777764
No 235
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=43.33 E-value=1.1e+02 Score=21.30 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=46.9
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
|+|+|+=...-...=-...+..|.+.|+++..+.++.+. -.|.+ .-.++.+. +...|+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~-------------------i~G~~--~y~sl~e~-p~~iDl 58 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE-------------------ILGIK--CYPSLAEI-PEPIDL 58 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE-------------------ETTEE---BSSGGGC-SST-SE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE-------------------ECcEE--eeccccCC-CCCCCE
Confidence 456666533211112344666777799999999887642 11222 22345552 578898
Q ss_pred EEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 89 liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
++|.- ..+.+.++++++.+.|..-+-+..|
T Consensus 59 avv~~--------~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 59 AVVCV--------PPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp EEE-S---------HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred EEEEc--------CHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 88853 2356777788877777555545544
No 236
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=42.57 E-value=72 Score=26.04 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=57.9
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcc
Q 027785 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA 165 (219)
Q Consensus 86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~ 165 (219)
.-++.|.|..++. .......++.++.-+++-.|....-++.-++++|+.++. +. .+ ..++
T Consensus 95 ~Gv~~ivGC~n~~--~~~~~~~~iakeL~k~d~LVlt~GC~a~~l~k~gl~~~~--g~----------~~---giP~--- 154 (258)
T cd00587 95 PGVALIVGCNNDK--KQDKAYADIAKELMKRGVMVLATGCAAEALLKLGLEDGA--GI----------LG---GLPI--- 154 (258)
T ss_pred CeEEEEEeCCCCC--ccchHHHHHHHHHHhCCEEEEecchHHHHHHhcCCcccc--cc----------cc---CCCc---
Confidence 4566666655553 456788999999999999999988899999999998872 10 00 0111
Q ss_pred eEEEcCCeEeCCCCCCHHHHHHHHHHHHcc
Q 027785 166 ACVVDGNIITGATYEGHPEFIRLFLKALGG 195 (219)
Q Consensus 166 ~~v~dg~liT~~g~~s~~~~~l~li~~l~~ 195 (219)
+..=| +|.....+..++.++.+.+++
T Consensus 155 -vl~~G---sCvD~~~ai~~A~~lA~~fg~ 180 (258)
T cd00587 155 -VFDMG---NCVDNSHAANLALKLANMFGG 180 (258)
T ss_pred -eeecc---cchhHHHHHHHHHHHHHHhCC
Confidence 33334 555556666777777777664
No 237
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.47 E-value=40 Score=26.87 Aligned_cols=34 Identities=6% Similarity=-0.194 Sum_probs=21.7
Q ss_pred EEEEEecC---CCCchhhHHHHHHHHhCCCeEEEecC
Q 027785 10 SVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 10 kv~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
||++++.+ .|...-+.++.+.+++.|+++.+...
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~ 37 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELISTDA 37 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 47888753 33334445666777788998876544
No 238
>PLN02727 NAD kinase
Probab=42.38 E-value=1.4e+02 Score=29.11 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=30.4
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH-HHH
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL-ILA 131 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~-~La 131 (219)
...|++|+.||.| .++.-.+.+.....||.+|-.|.. +|+
T Consensus 742 ~~~DLVIvLGGDG--------TlLrAar~~~~~~iPILGINlGrLGFLT 782 (986)
T PLN02727 742 ERVDFVACLGGDG--------VILHASNLFRGAVPPVVSFNLGSLGFLT 782 (986)
T ss_pred cCCCEEEEECCcH--------HHHHHHHHhcCCCCCEEEEeCCCccccc
Confidence 3689999999865 455666666677889999999976 444
No 239
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=41.85 E-value=1.2e+02 Score=29.83 Aligned_cols=131 Identities=16% Similarity=0.214 Sum_probs=67.1
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCC-c-------ceeccccCCccc------
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG-H-------QTYSETRGHNFA------ 73 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~-~-------~~~~~~~g~~i~------ 73 (219)
.|||+|+ |.-+..++.... |.+.|++|.++-....++-.-...+....- + ..+ ...|..+.
T Consensus 306 gkkVaVI---GsGPAGLsaA~~-Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l-~~~Gv~f~~n~~vG 380 (944)
T PRK12779 306 KPPIAVV---GSGPSGLINAYL-LAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKI-KLLGGRFVKNFVVG 380 (944)
T ss_pred CCeEEEE---CCCHHHHHHHHH-HHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHH-HhhcCeEEEeEEec
Confidence 5788877 444556666444 667899999986543222111111111000 0 001 11233322
Q ss_pred cccCccCCCCCCccEEEEcCCCC-cccc--cCC-----hHHHHHHHHHH---------------hcCCeEEEEehhHHHH
Q 027785 74 LNATFDEIDPTKYDGLVIPGGRA-PEYL--AMN-----DSVIDLVRKFS---------------NSGKTIASICHGQLIL 130 (219)
Q Consensus 74 ~~~~~~~~~~~~~D~liipGG~~-~~~~--~~~-----~~l~~~l~~~~---------------~~~~~v~~ic~G~~~L 130 (219)
.+.++++.....||+|||.-|.. +..+ +.. -...+||.... ..|+.|+-|+.|-..+
T Consensus 381 ~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~ 460 (944)
T PRK12779 381 KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAM 460 (944)
T ss_pred cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHH
Confidence 23344444334699999987753 3321 111 12356665421 1468899999998776
Q ss_pred HhCccc--CCceEee
Q 027785 131 AAADVV--KGRKCTA 143 (219)
Q Consensus 131 a~aGlL--~g~~~t~ 143 (219)
..+..+ .|.++|.
T Consensus 461 D~A~ta~R~Ga~Vtl 475 (944)
T PRK12779 461 DAARTAKRLGGNVTI 475 (944)
T ss_pred HHHHHHHHcCCEEEE
Confidence 655432 3445554
No 240
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.48 E-value=54 Score=25.94 Aligned_cols=34 Identities=18% Similarity=0.047 Sum_probs=22.5
Q ss_pred EEEEEecC---CCCchhhHHHHHHHHhCCCeEEEecC
Q 027785 10 SVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 10 kv~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
||+|++.+ .|...-..++.+.+++.|+++.+...
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 37 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGP 37 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 68888854 22333345666777888999888754
No 241
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.40 E-value=1.9e+02 Score=23.41 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=43.3
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL 89 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 89 (219)
|++|+--+. .........+.|.+.|+.+.+.... . . ...+.|++
T Consensus 2 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~------------------------------~---~--~~~~~d~v 45 (256)
T PRK14075 2 KLGIFYREE-KEKEAKFLKEKISKEHEVVEFCEAS------------------------------A---S--GKVTADLI 45 (256)
T ss_pred EEEEEeCcc-HHHHHHHHHHHHHHcCCeeEeeccc------------------------------c---c--ccCCCCEE
Confidence 677774444 4456666677777777655432110 0 0 11367999
Q ss_pred EEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
++.||.|. ++..++.+ +.||.+|-.|..
T Consensus 46 i~iGGDGT--------~L~a~~~~---~~Pilgin~G~l 73 (256)
T PRK14075 46 IVVGGDGT--------VLKAAKKV---GTPLVGFKAGRL 73 (256)
T ss_pred EEECCcHH--------HHHHHHHc---CCCEEEEeCCCC
Confidence 99998764 23333333 788888887763
No 242
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=40.93 E-value=2e+02 Score=23.46 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=23.8
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
.+.|+|+++-+.. ...++..++.++|+.+...+.|+
T Consensus 66 ~~~D~Vvi~tp~~--------~h~e~~~~aL~aGk~Vi~~s~ga 101 (271)
T PRK13302 66 THADIVVEAAPAS--------VLRAIVEPVLAAGKKAIVLSVGA 101 (271)
T ss_pred cCCCEEEECCCcH--------HHHHHHHHHHHcCCcEEEecchh
Confidence 4689999986432 23555566667788777666554
No 243
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=40.77 E-value=70 Score=25.03 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=30.0
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+|+.|++.||....++..+...++..|..+..++..
T Consensus 109 ~kvvillTDG~s~~~~~~~a~~lk~~gv~i~~VgvG 144 (224)
T cd01475 109 PRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVG 144 (224)
T ss_pred CeEEEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCC
Confidence 689999999988777888888899999888777653
No 244
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.68 E-value=45 Score=27.19 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=26.8
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
.++|++++.||.| .++..++.+...+.||.+|-.|..
T Consensus 32 ~~~D~vi~iGGDG--------T~L~a~~~~~~~~iPilGIN~G~l 68 (259)
T PRK00561 32 DGADYLFVLGGDG--------FFVSTAANYNCAGCKVVGINTGHL 68 (259)
T ss_pred CCCCEEEEECCcH--------HHHHHHHHhcCCCCcEEEEecCCC
Confidence 3689999999865 355556666667788888887753
No 245
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=40.35 E-value=1.1e+02 Score=25.45 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEEcCCeEeCCCCCC
Q 027785 102 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEG 181 (219)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s 181 (219)
..+++...++...+++.++..++.|+-+|..-+-++|--+... .. ...+..+++.+++.+...
T Consensus 44 ~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~gvVI~l~----------------~~-~~~i~~~~~~v~v~AG~~ 106 (302)
T PRK14652 44 DPDALSALLRAVRELGVPLSILGGGANTLVADAGVRGVVLRLP----------------QD-FPGESTDGGRLVLGAGAP 106 (302)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEeeEEEEec----------------CC-cceEEecCCEEEEECCCc
Confidence 3467888888888889999999999987643322222111110 00 001345667888888888
Q ss_pred HHHHHHHHHH
Q 027785 182 HPEFIRLFLK 191 (219)
Q Consensus 182 ~~~~~l~li~ 191 (219)
..++...+.+
T Consensus 107 ~~~L~~~~~~ 116 (302)
T PRK14652 107 ISRLPARAHA 116 (302)
T ss_pred HHHHHHHHHH
Confidence 9899888876
No 246
>PF10034 Dpy19: Q-cell neuroblast polarisation; InterPro: IPR018732 This entry represents the Dpy-19 protein from Caenorhabditis elegans and its homologues in other Metazoa, including mammals. In C. elegans, Dpy-19 is required to orient neuroblasts QL and QR correctly on the anterior/posterior (A/P) axis. These neuroblasts are born in the same A/P position, but polarise and migrate left/right asymmetrically, where QL migrates toward the posterior and QR migrates toward the anterior. After their migrations, QL (but not QR) switches on the Hox gene mab-5. Dpy-19 is required along with Unc-40 to express Mab-5 correctly in the Q cell descendants []. A mammalian dpy-19 homologue was found to be expressed in GABAergic neurons []. The mammalian homologue of Mab-5 is the Gsh2 homeobox transcription factor, which plays a crucial role in the development of GABAergic neurons. ; GO: 0016021 integral to membrane
Probab=40.30 E-value=14 Score=34.17 Aligned_cols=46 Identities=11% Similarity=0.250 Sum_probs=34.9
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHH
Q 027785 101 AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKP 149 (219)
Q Consensus 101 ~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~ 149 (219)
++.+++++||+..-+.+...+ ....++|.-.+-.||.+|-||++++
T Consensus 503 pd~~eL~~WIk~nt~~~AvFA---GsM~lma~vkL~T~r~ivnHPhYEd 548 (642)
T PF10034_consen 503 PDTEELMEWIKSNTPPDAVFA---GSMPLMASVKLCTGRPIVNHPHYED 548 (642)
T ss_pred cCHHHHHHHHHhcCCCCCeec---cCcchHHHHHHhcCCccccCcccCC
Confidence 345789999998766654333 2345888888999999999999863
No 247
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=40.15 E-value=67 Score=24.63 Aligned_cols=36 Identities=17% Similarity=-0.048 Sum_probs=29.4
Q ss_pred CEEEEEecCCCCch----hhHHHHHHHHhCCCeEEEecCC
Q 027785 9 RSVLLLCGDYMEDY----EAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 9 ~kv~il~~~g~~~~----e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+||+||+.||.+.. .+..+...++..|..+..++..
T Consensus 109 ~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG 148 (192)
T cd01473 109 PKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVG 148 (192)
T ss_pred CeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEec
Confidence 68999999998853 3566777899999998888775
No 248
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=39.90 E-value=1.2e+02 Score=24.64 Aligned_cols=98 Identities=13% Similarity=0.043 Sum_probs=55.1
Q ss_pred CCCCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785 6 GGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 85 (219)
Q Consensus 6 ~~~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 85 (219)
+..+||+|--..+ ........|++.|.++..+..=. +....... .+..+..+ .+
T Consensus 16 l~g~~IlvTRp~~----q~~~l~~~L~~~G~~~~~~P~i~------------------i~~~~~~~--~~~~l~~l--~~ 69 (266)
T PRK08811 16 DAAWTLISLRPSG----EHAPLRRAVARHGGRLLALSPWR------------------LQRLDTAQ--ARDALRQA--LA 69 (266)
T ss_pred CCCCEEEEeCCHH----HHHHHHHHHHHCCCcEEEcCcee------------------ecCCCchh--HHHHHhhc--cc
Confidence 4478887776655 44666788999998876652210 00000000 11223333 48
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH-HHHhCcc
Q 027785 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL-ILAAADV 135 (219)
Q Consensus 86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~-~La~aGl 135 (219)
||+|++....+.+.+. .++......+.++++|+.++. .|.+.|+
T Consensus 70 ~d~iiftS~NAV~~~~------~~~~~~~~~~~~~~AVG~~TA~aL~~~G~ 114 (266)
T PRK08811 70 APIVVFTSPAAVRAAH------RLLPLQRPARAHWLSVGEGTARALQACGI 114 (266)
T ss_pred CCEEEEECHHHHHHHH------HHhcccCccCCeEEEECHHHHHHHHHcCC
Confidence 9999998866654321 111111224677889998886 4455554
No 249
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=39.74 E-value=1.4e+02 Score=24.57 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=31.2
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCC
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (219)
||++--=||+....+..+.+.|+..| +|.+++|...
T Consensus 2 ~ILlTNDDGi~apGi~aL~~al~~~g-~V~VvAP~~e 37 (266)
T PRK13934 2 KILVTNDDGVHSPGLRLLYEFVSPLG-EVDVVAPETP 37 (266)
T ss_pred eEEEEcCCCCCCHHHHHHHHHHHhCC-cEEEEccCCC
Confidence 67777778999999999999999887 8999999764
No 250
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=39.73 E-value=88 Score=21.63 Aligned_cols=39 Identities=8% Similarity=0.047 Sum_probs=30.8
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
.+-|++|+..-.| ..+.+.+.++.+.++|.++.+++...
T Consensus 45 ~~~d~~I~iS~sG-----~t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 45 DEDTLVIAISQSG-----ETADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CCCcEEEEEeCCc-----CCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 3577777766443 46789999999999999999998853
No 251
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.51 E-value=2.1e+02 Score=23.43 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=21.6
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
+.|++++.||.|.. +.-.+ ....||.+|-.|..
T Consensus 52 ~~D~vi~lGGDGT~--------L~a~~---~~~~PilGIN~G~l 84 (271)
T PRK01185 52 NADVIITIGGDGTI--------LRTLQ---RAKGPILGINMGGL 84 (271)
T ss_pred CCCEEEEEcCcHHH--------HHHHH---HcCCCEEEEECCCC
Confidence 58999999998752 22222 22358888888764
No 252
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=39.51 E-value=54 Score=26.46 Aligned_cols=84 Identities=14% Similarity=0.035 Sum_probs=46.6
Q ss_pred EEEEEecC---CCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 10 SVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 10 kv~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
+|+|++.+ .|...-+.++.+.+++.|+++.+......+. .....+..+....+
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~------------------------~~~~~i~~~~~~~v 56 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKELGAEVIVQNANGDPA------------------------KQISQIENMIAKGV 56 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHH------------------------HHHHHHHHHHHcCC
Confidence 37788854 3344445566777778899988876543210 00011111122468
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEe
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASIC 124 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic 124 (219)
|.+++.+.. ......++++..+++.||+.+.
T Consensus 57 dgiii~~~~-------~~~~~~~l~~l~~~~ipvV~~~ 87 (288)
T cd01538 57 DVLVIAPVD-------GEALASAVEKAADAGIPVIAYD 87 (288)
T ss_pred CEEEEecCC-------hhhHHHHHHHHHHCCCCEEEEC
Confidence 988886522 1223456666666777777663
No 253
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=39.41 E-value=49 Score=24.45 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=23.8
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 82 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 82 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
++.+.|+++|.|.-... ....+.-+.++..+-|.|.++++
T Consensus 54 sPr~aDvllVtG~vt~~----~~~~l~~~~e~~p~pk~VIA~Gs 93 (145)
T TIGR01957 54 SPRQADVMIVAGTVTKK----MAPALRRLYDQMPEPKWVISMGA 93 (145)
T ss_pred CCCcceEEEEecCCcHH----HHHHHHHHHHhccCCceEEEecc
Confidence 45679999999864321 22233333333445888887754
No 254
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=39.35 E-value=1.1e+02 Score=24.47 Aligned_cols=102 Identities=12% Similarity=0.028 Sum_probs=52.6
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCcccccc---CccCCCCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNA---TFDEIDPT 84 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~---~~~~~~~~ 84 (219)
-+||+++.+ +...=-....+.|+.+|++|.-+..-+...+ ..+ -.+.++. ...+++.+
T Consensus 120 ~~RIalvTP--Y~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~---~~i--------------a~i~p~~i~~~~~~~~~~ 180 (239)
T TIGR02990 120 VRRISLLTP--YTPETSRPMAQYFAVRGFEIVNFTCLGLTDD---REM--------------ARISPDCIVEAALAAFDP 180 (239)
T ss_pred CCEEEEECC--CcHHHHHHHHHHHHhCCcEEeeeeccCCCCC---cee--------------eecCHHHHHHHHHHhcCC
Confidence 468888774 3332334456778889998866533221000 000 0111111 11222346
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH--HHHhCcc
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL--ILAAADV 135 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~--~La~aGl 135 (219)
+.|+||+.+.. + +.-.+++-|.+. -||||.+.-.... .|-.+|+
T Consensus 181 ~aDAifisCTn----L-rt~~vi~~lE~~--lGkPVlsSNqat~W~~Lr~~G~ 226 (239)
T TIGR02990 181 DADALFLSCTA----L-RAATCAQRIEQA--IGKPVVTSNQATAWRCLRLCGD 226 (239)
T ss_pred CCCEEEEeCCC----c-hhHHHHHHHHHH--HCCCEEEHHHHHHHHHHHHcCC
Confidence 89999998632 1 123344444433 3999988777764 4445553
No 255
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=38.85 E-value=66 Score=25.63 Aligned_cols=38 Identities=8% Similarity=0.283 Sum_probs=29.5
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
.+.|+++|-|.-.. ++....+.+++..++.|.|.++++
T Consensus 49 ~~~dil~VeG~i~~----~~~~~~~~~~~~~~~ak~vVA~Gt 86 (228)
T TIGR03294 49 PEMDVALVEGSVCL----QDEHSLEEIKELREKAKVVVALGA 86 (228)
T ss_pred CCccEEEEeCCCCC----CccHHHHHHHHHhccCCEEEEeec
Confidence 46899999886531 344578889999999999998865
No 256
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=38.73 E-value=1e+02 Score=23.01 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=21.1
Q ss_pred CCEEEEEecCC----CCchhhHHHHHHHHhCCCeEEEec
Q 027785 8 KRSVLLLCGDY----MEDYEAMVPFQALLAFGVSVDAAC 42 (219)
Q Consensus 8 ~~kv~il~~~g----~~~~e~~~~~~~l~~ag~~v~~~s 42 (219)
+.||+|+.... ..+..-..+...|++.|+++....
T Consensus 4 ~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~ 42 (163)
T TIGR02667 4 PLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRA 42 (163)
T ss_pred ccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEE
Confidence 46898886432 222233455666888888776543
No 257
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=38.46 E-value=1.6e+02 Score=26.27 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=32.6
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+||.|++.+|-+.-|-......|...|++|.++-+.
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~ 95 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPK 95 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEEC
Confidence 689999999999999999999999999999888654
No 258
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=38.28 E-value=91 Score=22.89 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=30.2
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
.+|+.|++.||....++......++..|+++..++.+
T Consensus 103 ~~k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g 139 (164)
T cd01482 103 VPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVK 139 (164)
T ss_pred CCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 4688999999988767777788899999988888664
No 259
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=38.24 E-value=1.4e+02 Score=24.75 Aligned_cols=37 Identities=11% Similarity=-0.006 Sum_probs=25.1
Q ss_pred CEEEEEecC----CCCchhhHHHHHHHHhCCCeEEEecCCC
Q 027785 9 RSVLLLCGD----YMEDYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 9 ~kv~il~~~----g~~~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
+|+.+++.+ +-....+....+.|+.+|+++...-...
T Consensus 3 ~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~ 43 (301)
T COG1597 3 KKALLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEE 43 (301)
T ss_pred ceEEEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeec
Confidence 566666644 2344567778888999998887765544
No 260
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=37.78 E-value=96 Score=19.62 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=27.2
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEe
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASIC 124 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic 124 (219)
+=|++++..-.| ..+.+.+.++...++|.++.+++
T Consensus 47 ~~d~~i~iS~sg-----~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 47 KGDVVIALSYSG-----RTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCEEEEEECCC-----CCHHHHHHHHHHHHcCCeEEEEe
Confidence 457777665333 36789999999999999999998
No 261
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=37.43 E-value=1.2e+02 Score=25.40 Aligned_cols=38 Identities=26% Similarity=0.101 Sum_probs=26.8
Q ss_pred CCEEEEEecCCCCchhh-----HHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCGDYMEDYEA-----MVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~-----~~~~~~l~~ag~~v~~~s~~~ 45 (219)
++||+|+..-...+.|+ ..+.+.|++.||++..+-.+.
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~ 45 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITK 45 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECC
Confidence 46899998654444444 467788888899998776554
No 262
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=37.36 E-value=1.7e+02 Score=21.53 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=55.6
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
.|+|+++=...--.-.-......|.+.||++.-+.|.-.. ..-.|.+.. .++.+++ ...|
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~-----------------~eiLG~k~y--~sL~dIp-e~ID 75 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAG-----------------EEILGEKVY--PSLADIP-EPID 75 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccch-----------------HHhcCchhh--hcHHhCC-CCCc
Confidence 6789998765555556677778888999999999884320 011132222 2455553 6788
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCe
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKT 119 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~ 119 (219)
+|-| ++..+.+.+.++++.+.+..
T Consensus 76 iVdv--------FR~~e~~~~i~~eal~~~~k 99 (140)
T COG1832 76 IVDV--------FRRSEAAPEVAREALEKGAK 99 (140)
T ss_pred EEEE--------ecChhhhHHHHHHHHhhCCC
Confidence 8776 45677888888888887733
No 263
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=37.36 E-value=59 Score=24.56 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=22.8
Q ss_pred CccEEEEcCCCCccc---------------ccCChHHHHHHHHHHhcC
Q 027785 85 KYDGLVIPGGRAPEY---------------LAMNDSVIDLVRKFSNSG 117 (219)
Q Consensus 85 ~~D~liipGG~~~~~---------------~~~~~~l~~~l~~~~~~~ 117 (219)
.+|+||+.||.|+.. +..++...++|++++.+.
T Consensus 58 ~~dlVIttGG~G~t~~D~t~ea~~~~~~~~l~~~~e~~~~i~~~~~~~ 105 (170)
T cd00885 58 RADLVITTGGLGPTHDDLTREAVAKAFGRPLVLDEEALERIEARFARR 105 (170)
T ss_pred CCCEEEECCCCCCCCCChHHHHHHHHhCCCcccCHHHHHHHHHHHHhc
Confidence 689999999987531 234566777777776543
No 264
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=36.89 E-value=1.9e+02 Score=24.32 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHhcCCeEEEEehhH-HHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEEc--CCeE---eCC
Q 027785 104 DSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVD--GNII---TGA 177 (219)
Q Consensus 104 ~~l~~~l~~~~~~~~~v~~ic~G~-~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~d--g~li---T~~ 177 (219)
..+.+|+++.+.+...+..||.-- .+=.-+.+|..|. .++.+ +|+| |+.+ .++
T Consensus 39 ~~~~~~~~~~f~~~d~iIfI~A~GIaVR~IAP~l~dK~------------------~DPaV---vvvDe~G~~vIsLLsG 97 (315)
T PRK05788 39 EGFADAFEEAFGCYDALIFIMATGIAVRVIAPLLKDKW------------------SDPAV---VVVDEKGKFVISLLSG 97 (315)
T ss_pred CCHHHHHHHHHhcCCeEEEEEChHHHHHHhchhhhccC------------------cCCCE---EEEeCCCCEEEEcccC
Confidence 568899999999887777776543 3333346665533 33332 4443 3433 333
Q ss_pred CCCCHHHHHHHHHHHHcccccc
Q 027785 178 TYEGHPEFIRLFLKALGGTITG 199 (219)
Q Consensus 178 g~~s~~~~~l~li~~l~~~~~~ 199 (219)
-...+.+++..+.+.+++....
T Consensus 98 H~GGAN~LA~~iA~~lga~pVI 119 (315)
T PRK05788 98 HHGGANELARDLAKILGAVPVI 119 (315)
T ss_pred CcccHHHHHHHHHHHhCCEEEE
Confidence 4456899999999999888653
No 265
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.86 E-value=74 Score=25.20 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=46.1
Q ss_pred EEEEEecCC----CCchhhHHHHHHHHhCCCeEEEecCCC-CCCCCCCcccccCCCcceeccccCCccccccCccCCCCC
Q 027785 10 SVLLLCGDY----MEDYEAMVPFQALLAFGVSVDAACPGK-KSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 84 (219)
Q Consensus 10 kv~il~~~g----~~~~e~~~~~~~l~~ag~~v~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 84 (219)
||++++.+. |...-+.++.+.+.+.|+.+.+...+. ++. .. ...++.+...
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~~~~~~~---------------------~~---~~~i~~l~~~ 56 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGPETFDVA---------------------DM---ARLIEAAIAA 56 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECCCCCCHH---------------------HH---HHHHHHHHHh
Confidence 577777542 222334456667777899988876543 210 00 0011121223
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
..|++++.+.. ...+.+.++...+++.+++.+..
T Consensus 57 ~vdgiii~~~~-------~~~~~~~l~~~~~~~ipvV~~~~ 90 (271)
T cd06312 57 KPDGIVVTIPD-------PDALDPAIKRAVAAGIPVISFNA 90 (271)
T ss_pred CCCEEEEeCCC-------hHHhHHHHHHHHHCCCeEEEeCC
Confidence 68998886521 12234456666667778877753
No 266
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=36.14 E-value=64 Score=26.53 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=20.0
Q ss_pred EEEEecCCC-CchhhHHHHHHHHhCCCeEEEecC
Q 027785 11 VLLLCGDYM-EDYEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 11 v~il~~~g~-~~~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
+.+++.+.. ....+......|+++|+++++...
T Consensus 2 ~~~I~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t 35 (293)
T TIGR03702 2 ALLILNGKQADNEDVREAVGDLRDEGIQLHVRVT 35 (293)
T ss_pred EEEEEeCCccchhHHHHHHHHHHHCCCeEEEEEe
Confidence 455554432 223455667788889988776633
No 267
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=36.08 E-value=2.5e+02 Score=24.20 Aligned_cols=74 Identities=16% Similarity=0.313 Sum_probs=50.8
Q ss_pred CChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEEc--CCeEeCCCC
Q 027785 102 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVD--GNIITGATY 179 (219)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~d--g~liT~~g~ 179 (219)
..+.+.+.++...+++.++.-++.|+.+|..-+-++|--+.... . .+.++ +..+++++.
T Consensus 41 s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~GvVI~l~~----------------~---~i~i~~~~~~v~vgAG 101 (363)
T PRK13903 41 STEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFDGTVVRVAT----------------R---GVTVDCGGGLVRAEAG 101 (363)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCccEEEEEeCC----------------C---cEEEeCCCCEEEEEcC
Confidence 44678888888888899999999999887554434442222110 0 12233 678888888
Q ss_pred CCHHHHHHHHHH-HHc
Q 027785 180 EGHPEFIRLFLK-ALG 194 (219)
Q Consensus 180 ~s~~~~~l~li~-~l~ 194 (219)
..+.+++....+ -+.
T Consensus 102 ~~~~~l~~~a~~~GL~ 117 (363)
T PRK13903 102 AVWDDVVARTVEAGLG 117 (363)
T ss_pred CCHHHHHHHHHHcCCc
Confidence 899999988886 344
No 268
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=35.54 E-value=1.4e+02 Score=24.96 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=47.2
Q ss_pred CChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEEcCCeEeCCCCCC
Q 027785 102 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEG 181 (219)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s 181 (219)
..+.+.+.++.+.+++.++..++.|+-+|...+-++|.-+.+. . ...+..+++.+++++...
T Consensus 45 ~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~GvvI~l~-----------------~-l~~i~~~~~~v~v~aG~~ 106 (307)
T PRK13906 45 KNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIRGIVISLL-----------------S-LDHIEVSDDAIIAGSGAA 106 (307)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcceEEEEec-----------------C-ccceEEeCCEEEEECCCc
Confidence 4467888888888899999999999987754433333222110 0 001344566788877778
Q ss_pred HHHHHHHHHH
Q 027785 182 HPEFIRLFLK 191 (219)
Q Consensus 182 ~~~~~l~li~ 191 (219)
..++.....+
T Consensus 107 ~~~l~~~~~~ 116 (307)
T PRK13906 107 IIDVSRVARD 116 (307)
T ss_pred HHHHHHHHHH
Confidence 8888877765
No 269
>PF09558 DUF2375: Protein of unknown function (DUF2375); InterPro: IPR014271 Two members of this family are found in Colwellia psychrerythraea (strain 34H / ATCC BAA-681) and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by IPR013424 from INTERPRO.
Probab=35.36 E-value=30 Score=21.80 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.5
Q ss_pred HHhcCCeEEEEehhHH
Q 027785 113 FSNSGKTIASICHGQL 128 (219)
Q Consensus 113 ~~~~~~~v~~ic~G~~ 128 (219)
.+++||.|.++|.|-.
T Consensus 42 ~Fr~GKsIiAVleGe~ 57 (71)
T PF09558_consen 42 SFRRGKSIIAVLEGEC 57 (71)
T ss_pred HHcCCceEEEEEcCce
Confidence 4678999999999864
No 270
>PRK00861 putative lipid kinase; Reviewed
Probab=34.67 E-value=1.3e+02 Score=24.68 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=18.1
Q ss_pred CEEEEEecCCCC----chhhHHHHHHHHhCCCeEEEecC
Q 027785 9 RSVLLLCGDYME----DYEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 9 ~kv~il~~~g~~----~~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
+|+.|++.|..- ...+......|.. +.++++...
T Consensus 3 ~~~~iI~NP~sG~~~~~~~~~~i~~~l~~-~~~~~~~~t 40 (300)
T PRK00861 3 RSACLIFNPVAGQGNPEVDLALIRAILEP-EMDLDIYLT 40 (300)
T ss_pred ceEEEEECCCCCCCchhhhHHHHHHHHHh-cCceEEEEc
Confidence 588888876321 1233444555655 356555443
No 271
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=34.65 E-value=97 Score=21.93 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=28.2
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
|||++.+.-..........+..|.+.|+++.++-.
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S 35 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLS 35 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEES
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 58999998888888888999999999999986644
No 272
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=34.37 E-value=62 Score=22.86 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=47.6
Q ss_pred EEEEEecCCCCc--hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc-
Q 027785 10 SVLLLCGDYMED--YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY- 86 (219)
Q Consensus 10 kv~il~~~g~~~--~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~- 86 (219)
|+.|++.|..-. .++..+...|+..+.++++....... . ...+.. ... ...+
T Consensus 1 k~~vi~Np~sG~~~~~~~~v~~~l~~~~~~~~~~~t~~~~-~-------------------~~~~~~---~~~--~~~~~ 55 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAKWKKVEPALRAAGIDYEVIETESAG-H-------------------AEALAR---ILA--LDDYP 55 (130)
T ss_dssp SEEEEEETTSTTSHHHHHHHHHHHHHTTCEEEEEEESSTT-H-------------------HHHHHH---HHH--HTTS-
T ss_pred CEEEEECCCCCCCchhHHHHHHHHHHcCCceEEEEEeccc-h-------------------HHHHHH---HHh--hccCc
Confidence 466666652222 12345677788888777665443210 0 000100 111 1244
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhcCC----eEEEEehhHH-HHHh
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGK----TIASICHGQL-ILAA 132 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~----~v~~ic~G~~-~La~ 132 (219)
|.|++.||.| .+...+....+... +++-+-.|+. .+++
T Consensus 56 ~~ivv~GGDG--------Tl~~vv~~l~~~~~~~~~~l~iiP~GT~N~~ar 98 (130)
T PF00781_consen 56 DVIVVVGGDG--------TLNEVVNGLMGSDREDKPPLGIIPAGTGNDFAR 98 (130)
T ss_dssp SEEEEEESHH--------HHHHHHHHHCTSTSSS--EEEEEE-SSS-HHHH
T ss_pred cEEEEEcCcc--------HHHHHHHHHhhcCCCccceEEEecCCChhHHHH
Confidence 9999999865 34455566666655 7777777763 4443
No 273
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=34.29 E-value=1.6e+02 Score=20.33 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=23.3
Q ss_pred CCEEEEEecCCCCchhhH-HHHHHHHhCCCeEEE
Q 027785 8 KRSVLLLCGDYMEDYEAM-VPFQALLAFGVSVDA 40 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~-~~~~~l~~ag~~v~~ 40 (219)
++||.++...|+...=+. -.....+..|.++++
T Consensus 3 ~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V 36 (106)
T PRK10499 3 KKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVII 36 (106)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEE
Confidence 468999999999876555 455555666765554
No 274
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=33.87 E-value=77 Score=24.48 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=25.8
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 82 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 82 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
++.++|+++|.|.... ...+.+.-+.++..+-|+|.++++
T Consensus 70 sPR~ADvllVtG~VT~----~m~~~l~~~yeqmp~pk~VIAvGs 109 (186)
T PRK14814 70 SPRQADMILVLGTITY----KMAPVLRQIYDQMAEPKFVISVGA 109 (186)
T ss_pred CcccceEEEEeccCch----hhHHHHHHHHHhcCCCCeEEEecc
Confidence 4678999999885321 233444444555556888888865
No 275
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=33.81 E-value=1.3e+02 Score=22.13 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=31.2
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
.+-|++|+....| .++.+++.++.+.++|.++.+++.
T Consensus 78 ~~~D~~i~iS~sG-----~t~~~~~~~~~a~~~g~~ii~iT~ 114 (154)
T TIGR00441 78 QKGDVLLGISTSG-----NSKNVLKAIEAAKDKGMKTITLAG 114 (154)
T ss_pred CCCCEEEEEcCCC-----CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4568888877655 478899999999999999999997
No 276
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=33.74 E-value=1.7e+02 Score=20.51 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=24.2
Q ss_pred CCccEEEEcCCC-CcccccCChHHHHHHHHHH---hcCCeEEEEehhH
Q 027785 84 TKYDGLVIPGGR-APEYLAMNDSVIDLVRKFS---NSGKTIASICHGQ 127 (219)
Q Consensus 84 ~~~D~liipGG~-~~~~~~~~~~l~~~l~~~~---~~~~~v~~ic~G~ 127 (219)
.++|.|++.... +....+ .+.+..|+.+.. -+++.++.+++|.
T Consensus 44 ~~~d~iilgspty~~g~~p-~~~~~~f~~~l~~~~~~gk~~~vfgt~g 90 (140)
T TIGR01753 44 LSYDAVLLGCSTWGDEDLE-QDDFEPFFEELEDIDLGGKKVALFGSGD 90 (140)
T ss_pred hcCCEEEEEcCCCCCCCCC-cchHHHHHHHhhhCCCCCCEEEEEecCC
Confidence 358988886543 221111 245556655544 3577777777654
No 277
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=33.50 E-value=81 Score=24.27 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=27.7
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 82 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 82 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
++.++|+++|.|.-. ....+.+.-+.++..+-|+|.++++
T Consensus 70 SPR~ADillVtG~VT----~~m~~~l~r~ye~~p~pK~VIAvGs 109 (183)
T PRK14815 70 SPRQADVMIVAGTVT----YKMALAVRRIYDQMPEPKWVIAMGA 109 (183)
T ss_pred CCccccEEEEeCcCc----hhhHHHHHHHHHhCCCCCEEEEecc
Confidence 467899999988532 1234555556667778899988854
No 278
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=33.17 E-value=1.9e+02 Score=23.34 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=31.6
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCC
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (219)
||+|--=||+....+..+++.|+..| +|.+++|...
T Consensus 2 ~ILltNDDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 37 (244)
T TIGR00087 2 KILLTNDDGIHSPGIRALYQALKELG-EVTVVAPARQ 37 (244)
T ss_pred eEEEECCCCCCCHhHHHHHHHHHhCC-CEEEEeCCCC
Confidence 67777778999999999999999988 8999999764
No 279
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=33.12 E-value=1.4e+02 Score=21.82 Aligned_cols=37 Identities=22% Similarity=0.114 Sum_probs=29.3
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
.+|+.|++.||....+.......++..|..+..+...
T Consensus 103 ~~~~iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g 139 (164)
T cd01472 103 VPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVK 139 (164)
T ss_pred CCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEECC
Confidence 4689999999987767766777788888888777654
No 280
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=32.78 E-value=2.6e+02 Score=22.35 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=51.4
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
.+||+|--... ........|+..|+++..+..-. +. +... ...+ +..+.++ .+||
T Consensus 3 g~~vlvTRp~~----~~~~l~~~l~~~G~~~~~~P~i~---------i~------p~~~--~~~~--~~~l~~l--~~~d 57 (255)
T PRK05752 3 GWRLLLTRPAE----ECAALAASLAEAGIFSSSLPLLA---------IE------PLPE--TPEQ--RALLLEL--DRYC 57 (255)
T ss_pred CCEEEECCcHH----HHHHHHHHHHHcCCCEEEcCcEE---------Ee------eCCC--CHHH--HHHHhcC--CCCC
Confidence 46776665544 44667788999998876652210 00 0000 0000 1112333 4799
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHh--cCCeEEEEehhHH-HHHhCcc
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHGQL-ILAAADV 135 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~--~~~~v~~ic~G~~-~La~aGl 135 (219)
+||+..-.+.+. +.+++++... ...++++|+.++. .|.+.|+
T Consensus 58 ~iifTS~naV~~------~~~~l~~~~~~~~~~~~~aVG~~Ta~al~~~G~ 102 (255)
T PRK05752 58 AVIVVSKPAARL------GLELLDRYWPQPPQQPWFSVGAATAAILQDYGL 102 (255)
T ss_pred EEEEECHHHHHH------HHHHHHhhCCCCcCCEEEEECHHHHHHHHHcCC
Confidence 999987555422 3333332221 2367888988886 5555554
No 281
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=32.13 E-value=94 Score=22.33 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=25.6
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEE
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASI 123 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~i 123 (219)
..+=|+||+....| +++.+++.++...++|..+.++
T Consensus 101 ~~~gDvli~iS~SG-----~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 101 IRPGDVLIVISNSG-----NSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp --TT-EEEEEESSS------SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCEEEEECCCC-----CCHHHHHHHHHHHHCCCEEEEE
Confidence 45678888876554 5788999999999999988876
No 282
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=32.04 E-value=3.3e+02 Score=23.38 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=55.8
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCe-EEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVS-VDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~-v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
+.+|+++..+.....|.......++..|.. ++.-...... . ......+. .....++++++ +.
T Consensus 87 ~~~i~~i~g~~~t~E~~~~lkkl~~~lgs~n~d~~~~~~~~-~-------------~~~~~~~~-~~~~~sl~die--~a 149 (366)
T cd02774 87 FSKLNFIIGSKIDLETLFYYKKLLNKLGSLNTNSNNFLENN-N-------------YFNLDLEN-YLFNNSLKNLD--KS 149 (366)
T ss_pred cccEEEEECCCCCHHHHHHHHHHHHHhCCCceecccccccc-c-------------cccccccC-CccCCCHHHHh--hC
Confidence 357999999988888888888877755532 1110000000 0 00000011 11234566663 89
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhc-CCeEEEEeh
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNS-GKTIASICH 125 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~-~~~v~~ic~ 125 (219)
|++++.|..-. ...|-+-..|++.+.+ +..|..|..
T Consensus 150 d~illiG~n~~---~e~Pvl~~rlrka~~~~~~ki~vi~~ 186 (366)
T cd02774 150 DLCLLIGSNLR---VESPILNIRLRNRYNKGNKKIFVIGN 186 (366)
T ss_pred CEEEEEcCCcc---hhhHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99999985421 2467788888888755 566766654
No 283
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=32.04 E-value=1.2e+02 Score=24.40 Aligned_cols=37 Identities=8% Similarity=-0.098 Sum_probs=23.8
Q ss_pred CCEEEEEecC---CCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+++|++++.+ .|...-+.++...+++.|+++.+....
T Consensus 26 ~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~~~~~ 65 (295)
T PRK10653 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ 65 (295)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 5688988853 223334455666777889998776443
No 284
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=32.00 E-value=2.2e+02 Score=22.36 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=38.8
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEee
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTA 143 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~ 143 (219)
..|.++|.-.. .++.-...|..||-.....||..--.-.|+. ||+.|||+-.
T Consensus 87 aAD~vVi~~PM--~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~-----GLl~gKKv~~ 138 (202)
T COG1182 87 AADKVVIAAPM--YNFNIPAQLKAYIDHIAVAGKTFKYTENGPV-----GLLTGKKVLI 138 (202)
T ss_pred hcCeEEEEecc--cccCCCHHHHHHHHHHhcCCceEEeccCCcc-----cccCCceEEE
Confidence 46777774321 1244567899999999999999988888885 8889988653
No 285
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=31.82 E-value=1.2e+02 Score=21.06 Aligned_cols=38 Identities=5% Similarity=0.163 Sum_probs=29.8
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
+-|++|+....| ..+.+.+.++.+.++|.++.+++...
T Consensus 47 ~~dl~I~iS~SG-----~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (120)
T cd05710 47 EKSVVILASHSG-----NTKETVAAAKFAKEKGATVIGLTDDE 84 (120)
T ss_pred CCcEEEEEeCCC-----CChHHHHHHHHHHHcCCeEEEEECCC
Confidence 458888776544 46889999999999999999988743
No 286
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=31.77 E-value=1.9e+02 Score=26.46 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=32.4
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
++|+|++.+|-+.-|-......|...|++|.++-+.
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~ 171 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPK 171 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcC
Confidence 589999999999999999999999999999988654
No 287
>PRK05320 rhodanese superfamily protein; Provisional
Probab=31.36 E-value=1.2e+02 Score=24.55 Aligned_cols=63 Identities=14% Similarity=0.240 Sum_probs=34.6
Q ss_pred HHHHHHHHHh--cCCeEEEEehh-------HHHHHhCcccCCceEee-CCCCHHHHHHCCCeEecCCCcceEEEcCCeE
Q 027785 106 VIDLVRKFSN--SGKTIASICHG-------QLILAAADVVKGRKCTA-YPPVKPVLIAAGASWIEPETMAACVVDGNII 174 (219)
Q Consensus 106 l~~~l~~~~~--~~~~v~~ic~G-------~~~La~aGlL~g~~~t~-~~~~~~~l~~~g~~~~~~~~~~~~v~dg~li 174 (219)
+..|+++... ++++|+.+|++ +..|.+.|.- ++.. .-....+.++.+...++.+ .||-|+++-
T Consensus 162 ~~~~l~~~~~~~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~---~V~~L~GGi~~w~~~~~~~~~~G~---~fVFD~R~~ 234 (257)
T PRK05320 162 FPEALAAHRADLAGKTVVSFCTGGIRCEKAAIHMQEVGID---NVYQLEGGILKYFEEVGGAHYDGD---CFVFDYRTA 234 (257)
T ss_pred hHHHHHhhhhhcCCCeEEEECCCCHHHHHHHHHHHHcCCc---ceEEeccCHHHHHHhCCCCeeeee---eeeecCeee
Confidence 3445654432 68899999998 4555555542 1221 1122344455554445544 477787764
No 288
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=31.28 E-value=2.9e+02 Score=22.50 Aligned_cols=77 Identities=17% Similarity=0.029 Sum_probs=45.8
Q ss_pred chhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccc
Q 027785 21 DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL 100 (219)
Q Consensus 21 ~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~ 100 (219)
..|+....+-|+++|.+|.++...+++..|.+. -|..=|++- ..-.+++.|---..+.+
T Consensus 56 ~~Ef~amve~L~~~GvdV~ifddtg~~~TPDsv-------------------FPNNWFSTh--~~g~v~LyPM~~~nRRl 114 (318)
T COG4874 56 MSEFNAMVEGLRQAGVDVVIFDDTGQGETPDSV-------------------FPNNWFSTH--EAGEVFLYPMACANRRL 114 (318)
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCCCCCccc-------------------CCCcccccC--cCCeEEEeeccCccccc
Confidence 368888999999999999999887654222111 111112222 12334444543223445
Q ss_pred cCChHHHHHHHHHHhcCC
Q 027785 101 AMNDSVIDLVRKFSNSGK 118 (219)
Q Consensus 101 ~~~~~l~~~l~~~~~~~~ 118 (219)
.+.+.+++.+++-++-.+
T Consensus 115 ER~~~lid~lk~~~~v~~ 132 (318)
T COG4874 115 ERPEALIDTLKQGFAVKK 132 (318)
T ss_pred cchHHHHHHHHhhhhhhh
Confidence 667789999987776443
No 289
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=31.11 E-value=1e+02 Score=19.68 Aligned_cols=33 Identities=15% Similarity=-0.013 Sum_probs=25.1
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEe
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAA 41 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~ 41 (219)
.+|.|+..+.-...+.......|+..|+++.+-
T Consensus 2 ~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d 34 (91)
T cd00860 2 VQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVD 34 (91)
T ss_pred eEEEEEeeCchHHHHHHHHHHHHHHCCCEEEEE
Confidence 567888776655557777788899999988773
No 290
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=30.93 E-value=95 Score=27.54 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHhCCCeEEEec-CCCCCCCCCCcccccCCCcceeccccCCccccccCccCCC--CCCccEEEEcCCCC
Q 027785 22 YEAMVPFQALLAFGVSVDAAC-PGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID--PTKYDGLVIPGGRA 96 (219)
Q Consensus 22 ~e~~~~~~~l~~ag~~v~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~--~~~~D~liipGG~~ 96 (219)
..+....+.|++.|.+|++.= |--+.. ..|.+....+.+.+...-...++++ -++.|+.+|.|-..
T Consensus 324 h~v~el~~~L~~~Gv~V~faIHPVAGRM---------PGHMNVLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGAND 392 (462)
T PRK09444 324 YPVAEITEKLRARGINVRFGIHPVAGRL---------PGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGAND 392 (462)
T ss_pred HHHHHHHHHHHHCCCeEEEEeccccccC---------CCcceeEEeecCCCHHHHHhHHhhccccccCCEEEEecCcc
Confidence 577888999999999998842 211110 0112233344444443333445554 35899999999764
No 291
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=30.92 E-value=1.2e+02 Score=22.70 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=30.6
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCC--CeEEEecCCCCC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFG--VSVDAACPGKKS 47 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag--~~v~~~s~~~~~ 47 (219)
++|+|++....+-.-.-...++|...| |++.++|-+..|
T Consensus 3 ~~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTP 43 (162)
T COG0041 3 PKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTP 43 (162)
T ss_pred ceEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCH
Confidence 389999987666666677788888887 788899988754
No 292
>TIGR02922 conserved hypothetical protein TIGR02922. Two members of this family are found in Colwellia psychrerythraea 34H and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by TIGR02595.
Probab=30.91 E-value=34 Score=21.21 Aligned_cols=16 Identities=31% Similarity=0.742 Sum_probs=13.2
Q ss_pred HHhcCCeEEEEehhHH
Q 027785 113 FSNSGKTIASICHGQL 128 (219)
Q Consensus 113 ~~~~~~~v~~ic~G~~ 128 (219)
-+++||.|.++|.|-.
T Consensus 40 eFkrGKsIiAV~EGe~ 55 (67)
T TIGR02922 40 EFKRGKSIIAVCEGEI 55 (67)
T ss_pred HHcCCCeEEEEEecce
Confidence 3678999999999864
No 293
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=30.88 E-value=1.3e+02 Score=20.79 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=30.4
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
.+-|++|+....| ..+.+++.++.+.++|.++.+++...
T Consensus 42 ~~~dl~I~iS~SG-----~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 42 DRKTLVIAVSYSG-----NTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCCCEEEEEECCC-----CCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3568888876544 56889999999999999999998543
No 294
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=30.45 E-value=1.1e+02 Score=23.59 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=26.4
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 82 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 82 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
++.+.|+++|.|.-.. .....+.-+.++..+-|+|.++++
T Consensus 78 sPRhADvllVtG~VT~----~m~~~l~~~~e~~p~pK~VIAvGs 117 (182)
T PRK14816 78 SPRQADMIMVCGTITN----KMAPVLKRLYDQMADPKYVIAVGG 117 (182)
T ss_pred CCCcceEEEEecCCcc----hhHHHHHHHHHhcCCCCEEEEecc
Confidence 4668999999885431 233444445555678899888865
No 295
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=30.22 E-value=1.7e+02 Score=19.61 Aligned_cols=82 Identities=20% Similarity=0.188 Sum_probs=46.0
Q ss_pred CCEEEEEecCCCCchhh-HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 8 KRSVLLLCGDYMEDYEA-MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~-~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
.+||.++...|+.-+=+ ..+.+.+.+.|+++++....-. .+.+. ..++
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~------------------------------~~~~~-~~~~ 51 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYG------------------------------AAGEK-LDDA 51 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHH------------------------------HHHhh-cCCC
Confidence 47899999998774311 2234455566777665543211 01111 2468
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHh-cCCeEEEEehhHH
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSN-SGKTIASICHGQL 128 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~-~~~~v~~ic~G~~ 128 (219)
|++++.. +-....+-+++..+ .+.||..|-.-.+
T Consensus 52 Dvill~p--------qi~~~~~~i~~~~~~~~ipv~~I~~~~Y 86 (95)
T TIGR00853 52 DVVLLAP--------QVAYMLPDLKKETDKKGIPVEVINGAQY 86 (95)
T ss_pred CEEEECc--------hHHHHHHHHHHHhhhcCCCEEEeChhhc
Confidence 9888742 12234444554443 4789988876655
No 296
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=29.78 E-value=77 Score=23.49 Aligned_cols=70 Identities=20% Similarity=0.141 Sum_probs=45.0
Q ss_pred cCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcc
Q 027785 116 SGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGG 195 (219)
Q Consensus 116 ~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~ 195 (219)
.|-.+++.+.|..+.| .=.+|-+++.-+........ .-..|.|+++=++-.-+.+++..+++.+..
T Consensus 61 ~GIliCGtGiG~siaA--NK~~GIRAA~~~d~~~A~~a------------r~hNnaNVL~lG~r~ig~~~a~~iv~~fl~ 126 (148)
T PRK05571 61 RGILICGTGIGMSIAA--NKVKGIRAALCHDTYSAHLA------------REHNNANVLALGARVIGPELAKDIVDAFLA 126 (148)
T ss_pred EEEEEcCCcHHHHHHH--hcCCCeEEEEECCHHHHHHH------------HHhcCCcEEEECccccCHHHHHHHHHHHHc
Confidence 3444555555665554 55677777665553322211 135678888888888899999999997776
Q ss_pred cccc
Q 027785 196 TITG 199 (219)
Q Consensus 196 ~~~~ 199 (219)
....
T Consensus 127 t~F~ 130 (148)
T PRK05571 127 TEFE 130 (148)
T ss_pred CCCC
Confidence 6553
No 297
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=29.40 E-value=1.5e+02 Score=20.36 Aligned_cols=33 Identities=18% Similarity=-0.009 Sum_probs=23.6
Q ss_pred EEEecCCCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 12 LLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 12 ~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+.....+............|+.+|+++..+...
T Consensus 4 ~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~ 36 (125)
T cd02065 4 GATVGGDVHDIGKNIVAIALRDNGFEVIDLGVD 36 (125)
T ss_pred EEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCC
Confidence 333344555667777788899999999988654
No 298
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=29.34 E-value=2.9e+02 Score=23.63 Aligned_cols=102 Identities=13% Similarity=-0.005 Sum_probs=53.5
Q ss_pred CCCCCCCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCC
Q 027785 3 NSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID 82 (219)
Q Consensus 3 ~~~~~~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 82 (219)
++|...+||+|--. . ........|++.|.++..+..-. +. +. .....+ +..+..+.
T Consensus 6 ~~pL~g~rIlvtr~-~----~a~~la~~L~~~G~~~~~~P~i~---------i~------~~--~~~~~~--~~~~~~l~ 61 (381)
T PRK07239 6 SAPLAGFTVGVTAA-R----RAEELAALLERRGARVVHAPALR---------IV------PL--ADDDEL--RAATRALI 61 (381)
T ss_pred CCCCCCcEEEEecc-C----CHHHHHHHHHHcCCeEEEecCEE---------Ee------cC--CCcHHH--HHHHHHHH
Confidence 34555789988853 2 34566678888898876652210 00 00 000000 11122222
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHH--------HhcCCeEEEEehhHH-HHHhCc
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKF--------SNSGKTIASICHGQL-ILAAAD 134 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~--------~~~~~~v~~ic~G~~-~La~aG 134 (219)
..+||+|++..+.+...+ .+++++. .-.+..+++++.++. .|.+.|
T Consensus 62 ~~~~d~vvfTS~ngv~~~------~~~l~~~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~G 116 (381)
T PRK07239 62 AAPPDIVVATTGIGFRGW------VEAADGWGLADELLEALSSARLLARGPKATGAIRAAG 116 (381)
T ss_pred cCCCCEEEEeChHHHHHH------HHHHHHcCChHHHHHHHcCCeEEEECccHHHHHHHcC
Confidence 247999999987765432 2222211 124667888888776 444444
No 299
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=29.33 E-value=1.3e+02 Score=23.98 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=53.5
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
+||+|.-... ........|+.+|+++..+..-.- ..... -...+.+++ .||+
T Consensus 2 ~~vlvtR~~~----~~~~~~~~l~~~G~~~~~~P~i~~--------------------~~~~~--l~~~l~~l~--~~d~ 53 (248)
T COG1587 2 MRVLVTRPRE----QAEELAALLRKAGAEPLELPLIEI--------------------EPLPD--LEVALEDLD--SADW 53 (248)
T ss_pred cEEEEeCchh----hhHHHHHHHHhCCCcceeecceee--------------------ecchh--HHHHHhccc--cCCE
Confidence 4677766662 556778889999987766533110 00000 123344443 3999
Q ss_pred EEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH-HHHhCcc
Q 027785 89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL-ILAAADV 135 (219)
Q Consensus 89 liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~-~La~aGl 135 (219)
|++....+...+ .+.+...-.. .-.++.+++++..+. .|.+.|+
T Consensus 54 vvfTS~~av~~~--~~~l~~~~~~-~~~~~~i~aVG~~Ta~~l~~~G~ 98 (248)
T COG1587 54 VVFTSPNAVRFF--FEALKEQGLD-ALKNKKIAAVGEKTAEALRKLGI 98 (248)
T ss_pred EEEECHHHHHHH--HHHHHhhccc-ccccCeEEEEcHHHHHHHHHhCC
Confidence 999876654321 1111111111 234688999998886 5555554
No 300
>PRK07308 flavodoxin; Validated
Probab=29.19 E-value=2e+02 Score=20.66 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=22.6
Q ss_pred CCccEEEEcCCC-CcccccCChHHHHHHHHHH---hcCCeEEEEehh
Q 027785 84 TKYDGLVIPGGR-APEYLAMNDSVIDLVRKFS---NSGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~-~~~~~~~~~~l~~~l~~~~---~~~~~v~~ic~G 126 (219)
.++|.|++.... +...+ .+.+.+|+.... -+++.++.+..|
T Consensus 47 ~~~d~vi~g~~t~g~G~~--p~~~~~fl~~l~~~~l~~k~~~vfG~G 91 (146)
T PRK07308 47 EDADIAIVATYTYGDGEL--PDEIVDFYEDLADLDLSGKIYGVVGSG 91 (146)
T ss_pred ccCCEEEEEeCccCCCCC--CHHHHHHHHHHhcCCCCCCEEEEEeeC
Confidence 468888884322 22221 234555655543 356777777775
No 301
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=29.07 E-value=1.3e+02 Score=24.29 Aligned_cols=37 Identities=14% Similarity=0.351 Sum_probs=30.6
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
+.|+++|-|+-. ++.-++.+++..++.+.|.|+++=+
T Consensus 51 EvDValVEGsV~------~ee~lE~v~ElRekakivVA~GsCA 87 (247)
T COG1941 51 EVDVALVEGSVC------DEEELELVKELREKAKIVVALGSCA 87 (247)
T ss_pred cccEEEEecccC------cHHHHHHHHHHHHhCcEEEEEecch
Confidence 499999988643 6778889999999999999887644
No 302
>PRK00549 competence damage-inducible protein A; Provisional
Probab=28.76 E-value=89 Score=27.34 Aligned_cols=83 Identities=11% Similarity=0.205 Sum_probs=49.0
Q ss_pred EEEEEec-C-----CCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCC
Q 027785 10 SVLLLCG-D-----YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP 83 (219)
Q Consensus 10 kv~il~~-~-----g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 83 (219)
|++|+.. + ...+.....+...|...|+++.....-++. . ..|. ..+... .
T Consensus 2 ~~~ii~~G~Ell~G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd--~-------------------~~I~--~~l~~a-~ 57 (414)
T PRK00549 2 KAEIIAVGTELLLGQIVNTNAQFLSEKLAELGIDVYHQTVVGDN--P-------------------ERLL--SALEIA-E 57 (414)
T ss_pred EEEEEEecccccCCceeEhhHHHHHHHHHHCCCeEEEEEEeCCC--H-------------------HHHH--HHHHHh-c
Confidence 6776653 1 223444556777788899887655432210 0 0011 112222 2
Q ss_pred CCccEEEEcCCCCcc--c-------------ccCChHHHHHHHHHHhc
Q 027785 84 TKYDGLVIPGGRAPE--Y-------------LAMNDSVIDLVRKFSNS 116 (219)
Q Consensus 84 ~~~D~liipGG~~~~--~-------------~~~~~~l~~~l~~~~~~ 116 (219)
.++|+||+.||.|+. + +..++...++|++++++
T Consensus 58 ~~~DlVItTGGlGpt~dD~t~ea~a~~~g~~l~~~~~~~~~i~~~~~~ 105 (414)
T PRK00549 58 ERSDLIITTGGLGPTKDDLTKETVAKFLGRELVLDEEALAKIEDYFAK 105 (414)
T ss_pred cCCCEEEECCCCCCCCCccHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 479999999998752 1 24578889999988864
No 303
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=28.68 E-value=1.4e+02 Score=26.22 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=30.9
Q ss_pred CccEEEEcCCCC-cccc--cCChHHHHHHHHHHhcCCe-EEEEehhHH-HHHhCcccCCceEeeCC
Q 027785 85 KYDGLVIPGGRA-PEYL--AMNDSVIDLVRKFSNSGKT-IASICHGQL-ILAAADVVKGRKCTAYP 145 (219)
Q Consensus 85 ~~D~liipGG~~-~~~~--~~~~~l~~~l~~~~~~~~~-v~~ic~G~~-~La~aGlL~g~~~t~~~ 145 (219)
++|+|||.=|.| .+++ -+++.+.+.| ++...| |.||+|=.= -|+ .+....++.|..
T Consensus 187 ~~dviii~RGGGs~eDL~~Fn~e~~~rai---~~~~~Pvis~iGHe~D~ti~--D~vAd~ra~TPt 247 (432)
T TIGR00237 187 ECDVLIVGRGGGSLEDLWSFNDEKVARAI---FLSKIPIISAVGHETDFTIS--DFVADLRAPTPS 247 (432)
T ss_pred CCCEEEEecCCCCHHHhhhcCcHHHHHHH---HcCCCCEEEecCcCCCccHH--HHhhhccCCCcH
Confidence 589999984434 3443 2344554444 555555 667777552 222 455556666543
No 304
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=28.42 E-value=97 Score=22.84 Aligned_cols=68 Identities=19% Similarity=0.070 Sum_probs=43.1
Q ss_pred CCeEEEEehhHHHHHhCcccCCceEeeCCCCHH-HHHHCCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcc
Q 027785 117 GKTIASICHGQLILAAADVVKGRKCTAYPPVKP-VLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGG 195 (219)
Q Consensus 117 ~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~-~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~ 195 (219)
|-.+++.+.|..+.| .=.+|-++..-|.... .+.+ -..|.|+++=++-.-+.++++.+++.+..
T Consensus 59 GIliCGtGiG~siaA--NK~~GIraa~~~d~~~A~~ar-------------~hNnaNVl~lGar~ig~~~a~~iv~~fL~ 123 (144)
T TIGR00689 59 GILICGTGIGMSIAA--NKFKGIRAALCVDEYTAALAR-------------QHNDANVLCLGSRVVGVELALSIVDAFLT 123 (144)
T ss_pred EEEEcCCcHHHHHHH--hcCCCeEEEEECCHHHHHHHH-------------HhcCCcEEEECccccCHHHHHHHHHHHHc
Confidence 344555555555544 5556767666554332 2221 35678888888877888999999998776
Q ss_pred cccc
Q 027785 196 TITG 199 (219)
Q Consensus 196 ~~~~ 199 (219)
....
T Consensus 124 t~f~ 127 (144)
T TIGR00689 124 TQFE 127 (144)
T ss_pred CCCC
Confidence 6553
No 305
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=28.25 E-value=1.5e+02 Score=24.98 Aligned_cols=98 Identities=12% Similarity=0.058 Sum_probs=52.1
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
.+|+.|+.-++....-...+.+.|...|+++.++...+....+. +..-. .+ -..+.+......|
T Consensus 24 ~~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~------------~~~v~--~~--~~~~~~~~~~r~d 87 (345)
T cd08195 24 GSKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKS------------LETLE--KL--YDALLEAGLDRKS 87 (345)
T ss_pred CCeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCC------------HHHHH--HH--HHHHHHcCCCCCC
Confidence 36788887666654334445667777887666443322110000 00000 00 0011122223568
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
+|+-.||....+ +-+++...+.++.++..|.+-.
T Consensus 88 ~IIaiGGGsv~D------~ak~vA~~~~rgip~i~VPTT~ 121 (345)
T cd08195 88 LIIALGGGVVGD------LAGFVAATYMRGIDFIQIPTTL 121 (345)
T ss_pred eEEEECChHHHh------HHHHHHHHHhcCCCeEEcchhH
Confidence 898888865432 4456666677899999998854
No 306
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=28.23 E-value=1.4e+02 Score=23.06 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=25.8
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
.+|++||-|| + .-+.++++.-+..+.|..+.+-+.
T Consensus 102 ~~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 102 SPDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred CCCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEEee
Confidence 7999999776 3 346778888877777776666554
No 307
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=28.18 E-value=1.3e+02 Score=23.03 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=31.2
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
.+-|++|+....| .++.+++.++.+.++|.++.+++.-
T Consensus 110 ~~~Dv~I~iS~SG-----~t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 110 REGDVLLGISTSG-----NSGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4568888876554 5788999999999999999999875
No 308
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=28.17 E-value=1.7e+02 Score=19.58 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=26.5
Q ss_pred CEEEEEecCCCCchhh--HHHHHHHHhCCCeEEEec
Q 027785 9 RSVLLLCGDYMEDYEA--MVPFQALLAFGVSVDAAC 42 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~--~~~~~~l~~ag~~v~~~s 42 (219)
+||.++...|+.-+-+ ....+.|.+.|+++++..
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~ 38 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQ 38 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4899999999876665 455588889998877765
No 309
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=27.99 E-value=1.5e+02 Score=23.94 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=31.9
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
++|.|++.+|-+.-+-......|...|++|.++-+
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEc
Confidence 68999999999999999999999999999998864
No 310
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=27.56 E-value=94 Score=22.89 Aligned_cols=69 Identities=17% Similarity=0.088 Sum_probs=42.5
Q ss_pred CCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccc
Q 027785 117 GKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT 196 (219)
Q Consensus 117 ~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~ 196 (219)
|-.+++.+.|..+.| .=.+|-++..-+........ .-..|.|+++=++-.-+.+++..+++.+...
T Consensus 60 GIliCGtGiG~siaA--NK~~GIraa~~~d~~~A~~a------------r~hNnaNvl~lG~r~~g~~~a~~iv~~fl~t 125 (143)
T TIGR01120 60 GILICGTGIGMSIAA--NKFAGIRAALCSEPYMAQMS------------RLHNDANVLCLGERVVGLELAKSIVDAWLGT 125 (143)
T ss_pred EEEEcCCcHHHHHHH--hcCCCeEEEEECCHHHHHHH------------HHhcCCcEEEECcceeCHHHHHHHHHHHHcC
Confidence 344555555555444 45567676655543322211 1346778888888777889999999877766
Q ss_pred ccc
Q 027785 197 ITG 199 (219)
Q Consensus 197 ~~~ 199 (219)
...
T Consensus 126 ~f~ 128 (143)
T TIGR01120 126 QFE 128 (143)
T ss_pred CCC
Confidence 553
No 311
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=27.47 E-value=88 Score=22.99 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=44.8
Q ss_pred cCCeEEEEehhHHHHHhCcccCCceEeeCCCCH-HHHHHCCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHc
Q 027785 116 SGKTIASICHGQLILAAADVVKGRKCTAYPPVK-PVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALG 194 (219)
Q Consensus 116 ~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~-~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~ 194 (219)
.|-.+++.+.|..+.| .=.+|-++..-|+.. ..+.+ -..|-|+++=++-.-+.+++..+++.+.
T Consensus 57 ~GIliCGtGiG~siaA--NKv~GIRaA~~~d~~~A~~ar-------------~hNnaNVl~lG~r~ig~~~a~~iv~~fL 121 (141)
T PRK12613 57 LGIMVDAYGAGPFMVA--TKLKGMVAAEVSDERSAYMTR-------------GHNNARMITMGAEIVGPELAKNIAKGFV 121 (141)
T ss_pred eEEEEcCCCHhHhhhh--hcCCCeEEEEECCHHHHHHHH-------------HHcCCcEEEECccccCHHHHHHHHHHHH
Confidence 3444555555665544 555776766655433 22222 3567788888888889999999999777
Q ss_pred ccccc
Q 027785 195 GTITG 199 (219)
Q Consensus 195 ~~~~~ 199 (219)
.....
T Consensus 122 ~t~f~ 126 (141)
T PRK12613 122 TGPYD 126 (141)
T ss_pred cCCCC
Confidence 66553
No 312
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=27.45 E-value=39 Score=29.64 Aligned_cols=19 Identities=32% Similarity=0.629 Sum_probs=13.8
Q ss_pred CccCCCCCCccEEEEcCCC
Q 027785 77 TFDEIDPTKYDGLVIPGGR 95 (219)
Q Consensus 77 ~~~~~~~~~~D~liipGG~ 95 (219)
+....+...||+||+-||+
T Consensus 28 s~~~~~~~~~dVvIvGgGp 46 (481)
T KOG3855|consen 28 SAKSTDTAKYDVVIVGGGP 46 (481)
T ss_pred ccccCCcccCCEEEECCch
Confidence 3444455689999998886
No 313
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=27.44 E-value=1.7e+02 Score=24.36 Aligned_cols=73 Identities=11% Similarity=0.024 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEEcCC--eEeCCCC
Q 027785 102 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN--IITGATY 179 (219)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~dg~--liT~~g~ 179 (219)
..+++.+.++...+++.++.-++.|+-+|...+-++|--+..... + + .+..+++ .+++.+.
T Consensus 29 ~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~GvVI~l~~~--------~--~-------~i~~~~~~~~v~v~AG 91 (295)
T PRK14649 29 TPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFDGLVARYRGQ--------R--W-------ELHEHGDTAEVWVEAG 91 (295)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcCeEEEEecCC--------C--c-------EEEEeCCcEEEEEEcC
Confidence 346788888888888999999999999888776556533322110 0 0 1233443 7888888
Q ss_pred CCHHHHHHHHHH
Q 027785 180 EGHPEFIRLFLK 191 (219)
Q Consensus 180 ~s~~~~~l~li~ 191 (219)
..+.+++...++
T Consensus 92 ~~~~~l~~~~~~ 103 (295)
T PRK14649 92 APMAGTARRLAA 103 (295)
T ss_pred CcHHHHHHHHHH
Confidence 899999988876
No 314
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=27.22 E-value=3.4e+02 Score=22.62 Aligned_cols=74 Identities=9% Similarity=0.034 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEEcCCeEeCCCCCC
Q 027785 102 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEG 181 (219)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s 181 (219)
+.+.+.+.++...+++-|+.-++.|+-+|-..+-++|--...-.. ... ....++..+++.+...
T Consensus 29 ~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~gvvi~~~~~-------------~~~---~~~~~~~~i~a~aG~~ 92 (291)
T COG0812 29 DIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIGGVVIKLGKL-------------NFI---EIEGDDGLIEAGAGAP 92 (291)
T ss_pred CHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCceEEEEcccc-------------cce---eeeccCCeEEEccCCc
Confidence 347899999999989999999999998777665444422111100 000 0222333888888899
Q ss_pred HHHHHHHHHH
Q 027785 182 HPEFIRLFLK 191 (219)
Q Consensus 182 ~~~~~l~li~ 191 (219)
+.+++...++
T Consensus 93 ~~~l~~~~~~ 102 (291)
T COG0812 93 WHDLVRFALE 102 (291)
T ss_pred HHHHHHHHHH
Confidence 9999998886
No 315
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.53 E-value=1.2e+02 Score=23.93 Aligned_cols=35 Identities=9% Similarity=-0.042 Sum_probs=21.1
Q ss_pred EEEEEecC---CCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 10 SVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 10 kv~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+|+|++.+ .|...-+.++.+.+++.|+++.++...
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 38 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKALGYDAVELSAE 38 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHhcCCeEEEecCC
Confidence 47777753 333334455556667788888776443
No 316
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=26.36 E-value=1.3e+02 Score=23.81 Aligned_cols=34 Identities=15% Similarity=-0.053 Sum_probs=20.6
Q ss_pred EEEEEecCC---CCchhhHHHHHHHHhCCCeEEEecC
Q 027785 10 SVLLLCGDY---MEDYEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 10 kv~il~~~g---~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
||++++.+- |...-+.++.+.++..|+++.+...
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~ 37 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAA 37 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEcc
Confidence 578888641 2222233555667778998877643
No 317
>PLN02522 ATP citrate (pro-S)-lyase
Probab=26.31 E-value=62 Score=29.91 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=29.1
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHH
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~ 129 (219)
++-++|++-|-.|- .+.+++.+++++.. .+|||++++.|..-
T Consensus 221 p~Tk~IvlygEiGg---~~e~~f~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 221 PQIKMIVVLGELGG---RDEYSLVEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred CCCCEEEEEEecCc---hhHHHHHHHHHHhc-CCCCEEEEeccCCC
Confidence 34556666553221 23468889998876 78999999998854
No 318
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.26 E-value=1.3e+02 Score=23.57 Aligned_cols=33 Identities=6% Similarity=-0.324 Sum_probs=20.5
Q ss_pred EEEEecC---CCCchhhHHHHHHHHhCCCeEEEecC
Q 027785 11 VLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 11 v~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
|++++.+ .|...-+.++.+.++..|+++.+...
T Consensus 2 i~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~i~~~ 37 (267)
T cd06322 2 IGASLLTQQHPFYIELANAMKEEAKKQKVNLIVSIA 37 (267)
T ss_pred eeEeecCcccHHHHHHHHHHHHHHHhcCCEEEEecC
Confidence 6666654 33334455666677778998876543
No 319
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=26.24 E-value=95 Score=24.68 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=27.3
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
+||--++|-...+.....++.+.+.|++..+..+..++|.+|-
T Consensus 9 D~DGTL~~~~~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR 51 (244)
T TIGR00685 9 DYDGTLSEIVPDPDAAVVSDRLLTILQKLAARPHNAIWIISGR 51 (244)
T ss_pred ecCccccCCcCCCcccCCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 4666666644333333446788888888887766666666665
No 320
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=26.15 E-value=2e+02 Score=24.02 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=50.4
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCc
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETM 164 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~ 164 (219)
.+|+++.|. ..+.+.+.++.+.+++.|+..++.|+-++...+=++|--+... . +
T Consensus 36 ~a~~vv~p~--------~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~GvvI~l~-~----l------------- 89 (305)
T PRK12436 36 KADVFVAPT--------NYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIRGITVSLI-H----I------------- 89 (305)
T ss_pred eEEEEEecC--------CHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCeeEEEEEeC-C----c-------------
Confidence 466666664 3467888888778889999999999987743221222111110 0 0
Q ss_pred ceEEEcCCeEeCCCCCCHHHHHHHHHHH
Q 027785 165 AACVVDGNIITGATYEGHPEFIRLFLKA 192 (219)
Q Consensus 165 ~~~v~dg~liT~~g~~s~~~~~l~li~~ 192 (219)
..+..+++.+++.+.....++...+.+.
T Consensus 90 ~~i~~~~~~v~v~aG~~~~~L~~~~~~~ 117 (305)
T PRK12436 90 TGVTVTGTTIVAQCGAAIIDVSRIALDH 117 (305)
T ss_pred CcEEEeCCEEEEEeCCcHHHHHHHHHHc
Confidence 0134456667777777777887777764
No 321
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.02 E-value=1.5e+02 Score=20.33 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=28.1
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
+-|.+|+..-.| ..+.+.+.++...+++.++.+|+..
T Consensus 53 ~~d~vi~is~sg-----~~~~~~~~~~~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 53 PDDLVIIISYSG-----ETRELIELLRFAKERGAPVILITSN 89 (131)
T ss_dssp TTEEEEEEESSS-----TTHHHHHHHHHHHHTTSEEEEEESS
T ss_pred ccceeEeeeccc-----cchhhhhhhHHHHhcCCeEEEEeCC
Confidence 457777765333 4688999999888999999888853
No 322
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.02 E-value=1.8e+02 Score=23.21 Aligned_cols=35 Identities=11% Similarity=-0.066 Sum_probs=22.4
Q ss_pred CEEEEEecC---CCCchhhHHHHHHHHhCCCeEEEecC
Q 027785 9 RSVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 9 ~kv~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
|+|++++.+ .|...=+.++.+.+++.||++.+...
T Consensus 1 ~~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~~~~~~~ 38 (280)
T cd06315 1 KNIIFVASDLKNGGILGVGEGVREAAKAIGWNLRILDG 38 (280)
T ss_pred CeEEEEecccCCcHHHHHHHHHHHHHHHcCcEEEEECC
Confidence 478888864 23223344555777788998877644
No 323
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=25.93 E-value=1.8e+02 Score=22.82 Aligned_cols=37 Identities=14% Similarity=-0.095 Sum_probs=27.9
Q ss_pred CEEEEEecC-CCCchhhHHHHHHHHhCCCeEEEecCCC
Q 027785 9 RSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 9 ~kv~il~~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
.||.+...+ +..+.........|+.+||++..+..+-
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v 126 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV 126 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 466666555 5566777788889999999999987654
No 324
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=25.88 E-value=1.6e+02 Score=21.97 Aligned_cols=38 Identities=11% Similarity=0.055 Sum_probs=30.4
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
.+-|++|+....| .++.+++.++.+.++|.++.+|+..
T Consensus 100 ~~~Dv~I~iS~SG-----~t~~~i~~~~~ak~~Ga~vI~IT~~ 137 (177)
T cd05006 100 QPGDVLIGISTSG-----NSPNVLKALEAAKERGMKTIALTGR 137 (177)
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3567877766444 5789999999999999999999864
No 325
>PRK13937 phosphoheptose isomerase; Provisional
Probab=25.67 E-value=1.6e+02 Score=22.39 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=30.4
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
.+-|++|+....| .++.+.+.++...++|.++.+++.
T Consensus 105 ~~~Dl~i~iS~sG-----~t~~~~~~~~~ak~~g~~~I~iT~ 141 (188)
T PRK13937 105 RPGDVLIGISTSG-----NSPNVLAALEKARELGMKTIGLTG 141 (188)
T ss_pred CCCCEEEEEeCCC-----CcHHHHHHHHHHHHCCCeEEEEeC
Confidence 3558888876554 478899999999999999999987
No 326
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.65 E-value=1e+02 Score=25.29 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=27.4
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
++|++++.||.| .++...+.+...+.||.+|-.|..
T Consensus 42 ~~d~vi~iGGDG--------T~L~aa~~~~~~~~PilgIn~G~l 77 (272)
T PRK02231 42 RAQLAIVIGGDG--------NMLGRARVLAKYDIPLIGINRGNL 77 (272)
T ss_pred CCCEEEEECCcH--------HHHHHHHHhccCCCcEEEEeCCCC
Confidence 589999999865 455556666667889999988854
No 327
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=25.52 E-value=1.8e+02 Score=22.33 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=28.8
Q ss_pred CCEEEEEecCCCCc---hhhHHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCGDYMED---YEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~~g~~~---~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
.+|+.|++.+|... .+...+...|+..|..+..++...
T Consensus 131 v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGiG~ 171 (193)
T cd01477 131 YKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAFTQ 171 (193)
T ss_pred CCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 36899999876432 356677888999999998887754
No 328
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=25.26 E-value=59 Score=24.42 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=23.7
Q ss_pred CCEEEEEecCCCC---chhhHHHHHHHHhCCC---eEEEecC
Q 027785 8 KRSVLLLCGDYME---DYEAMVPFQALLAFGV---SVDAACP 43 (219)
Q Consensus 8 ~~kv~il~~~g~~---~~e~~~~~~~l~~ag~---~v~~~s~ 43 (219)
..||+|+.....+ ..=+.+..+.|.+.|. +++++..
T Consensus 10 ~~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~V 51 (158)
T PRK12419 10 PQRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDV 51 (158)
T ss_pred CCEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 5699999976333 3445667778888883 3555543
No 329
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=24.59 E-value=2e+02 Score=23.79 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=47.0
Q ss_pred CChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEEcCCeEeCCCCCC
Q 027785 102 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEG 181 (219)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s 181 (219)
..+++.+.++.+.+++.++..++.|+-++...+-++|.-+..... ...+..+++.+|+.+...
T Consensus 39 s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~gvvI~l~~~-----------------l~~i~~~~~~v~v~aG~~ 101 (298)
T PRK13905 39 DIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIRGVVIRLGKG-----------------LNEIEVEGNRITAGAGAP 101 (298)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcceEEEEecCC-----------------cceEEecCCEEEEECCCc
Confidence 346788888888888999999999987654322122222111100 001334566788888888
Q ss_pred HHHHHHHHHHH
Q 027785 182 HPEFIRLFLKA 192 (219)
Q Consensus 182 ~~~~~l~li~~ 192 (219)
..++..++.+.
T Consensus 102 ~~~L~~~l~~~ 112 (298)
T PRK13905 102 LIKLARFAAEA 112 (298)
T ss_pred HHHHHHHHHHc
Confidence 88888888863
No 330
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.39 E-value=1.3e+02 Score=24.55 Aligned_cols=36 Identities=17% Similarity=0.397 Sum_probs=26.6
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHh--cCCeEEEEehhHH
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHGQL 128 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~--~~~~v~~ic~G~~ 128 (219)
++|.+++.||.| .+++-++.+.. .+.|+.+|-.|..
T Consensus 35 ~~Dlvi~iGGDG--------T~L~a~~~~~~~~~~iPilGIN~G~l 72 (265)
T PRK04885 35 NPDIVISVGGDG--------TLLSAFHRYENQLDKVRFVGVHTGHL 72 (265)
T ss_pred CCCEEEEECCcH--------HHHHHHHHhcccCCCCeEEEEeCCCc
Confidence 579999999865 35555666555 5888898888875
No 331
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=24.20 E-value=2.9e+02 Score=26.05 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=53.9
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCC-eEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGV-SVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~-~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
+.+|+++..+.....+...+...++..|. .++.- ..+...+ . ....+.. ...+++++ .+.
T Consensus 305 ~~~ia~i~g~~~~~E~~~~lkkl~~~lGs~nid~~-~~~~~~~-------------~-~~~~~~~--~~~si~dI--e~A 365 (687)
T PRK09130 305 GEKIAAIAGDLADVESMFALKDLMQKLGSSNLDCR-QDGAKLD-------------P-SLRASYL--FNTTIAGI--EEA 365 (687)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHcCCCccccc-cchhhhh-------------h-hhhccCC--CCCCHHHH--HhC
Confidence 35799999888777777777777776553 12110 0000000 0 0001111 12345555 478
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhcCC-eEEEEeh
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGK-TIASICH 125 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~-~v~~ic~ 125 (219)
|.+++-|..-. ...+.+...|++..++|. .|+.|..
T Consensus 366 D~IlliG~Np~---~eaPvl~~rirka~~~g~~kIivIdp 402 (687)
T PRK09130 366 DAILLIGANPR---FEAPVLNARIRKRWRAGGFKIAVIGE 402 (687)
T ss_pred CEEEEEccCcc---cccHHHHHHHHHHHHcCCCeEEEEcC
Confidence 99999885421 235778888888887774 6666654
No 332
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=24.14 E-value=1.6e+02 Score=24.67 Aligned_cols=31 Identities=23% Similarity=0.128 Sum_probs=28.7
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeE
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSV 38 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v 38 (219)
.++|+|+..|+.+..++..+.+.|..+|.++
T Consensus 83 g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v 113 (308)
T PF11382_consen 83 GRSVAVVTLPGADDEDVDAVRELLEQAGATV 113 (308)
T ss_pred CCEEEEEEcCCCChHHHHHHHHHHHHCCCeE
Confidence 6899999999999999999999999999655
No 333
>PRK13938 phosphoheptose isomerase; Provisional
Probab=23.85 E-value=2e+02 Score=22.30 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=32.0
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
..+-|++|+....| ..+.+++.++...++|.++.+++...
T Consensus 111 ~~~~DllI~iS~SG-----~t~~vi~a~~~Ak~~G~~vI~iT~~~ 150 (196)
T PRK13938 111 ARPGDTLFAISTSG-----NSMSVLRAAKTARELGVTVVAMTGES 150 (196)
T ss_pred CCCCCEEEEEcCCC-----CCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 35678888876554 47889999999999999999998733
No 334
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=23.68 E-value=1.7e+02 Score=24.42 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=48.7
Q ss_pred CChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEEcCCeEeCCCCCC
Q 027785 102 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEG 181 (219)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s 181 (219)
..+.+.+.++...+ +.++.-++.|+-+|...+-++|--+.... + . .+..+++.+++.....
T Consensus 42 s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~gvVI~l~~-----~----------~---~i~i~~~~v~v~AG~~ 102 (297)
T PRK14653 42 STNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMDFVVVSTER-----L----------D---DIFVDNDKIICESGLS 102 (297)
T ss_pred CHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCccEEEEEeCC-----c----------C---ceEEeCCEEEEeCCCc
Confidence 34568888877777 99999999999988877545552222100 0 0 1334567788888888
Q ss_pred HHHHHHHHHH
Q 027785 182 HPEFIRLFLK 191 (219)
Q Consensus 182 ~~~~~l~li~ 191 (219)
..+++.+..+
T Consensus 103 l~~L~~~~~~ 112 (297)
T PRK14653 103 LKKLCLVAAK 112 (297)
T ss_pred HHHHHHHHHH
Confidence 8899888886
No 335
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=23.67 E-value=2.6e+02 Score=21.98 Aligned_cols=37 Identities=11% Similarity=-0.099 Sum_probs=23.3
Q ss_pred CCEEEEEecC------CC----CchhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGD------YM----EDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~------g~----~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
++.|+|+++. .. ...-+.++...++..|+++.+...+
T Consensus 3 s~~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~v~~~~ 49 (275)
T cd06295 3 TDTIALVVPEPHERDQSFSDPFFLSLLGGIADALAERGYDLLLSFVS 49 (275)
T ss_pred ceEEEEEecCccccccccCCchHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5689999964 12 2222334566777789998877543
No 336
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=23.55 E-value=1.9e+02 Score=18.22 Aligned_cols=32 Identities=19% Similarity=0.071 Sum_probs=24.3
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
=.+++|+... +.......|+.+|+.+.++..-
T Consensus 3 ~~~i~F~st~--~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 3 YYLITFPSTH--DAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred eEEEEECCHH--HHHHHHHHHHHCCCcEEEeCCC
Confidence 3566666554 8888899999999988888543
No 337
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=23.52 E-value=77 Score=22.25 Aligned_cols=65 Identities=11% Similarity=-0.024 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCC-CCccEEEEcCCCCcccc
Q 027785 22 YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP-TKYDGLVIPGGRAPEYL 100 (219)
Q Consensus 22 ~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~-~~~D~liipGG~~~~~~ 100 (219)
..+..+...+++.|+++...-... .+..++.+.. .++|+|.+..-... .
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~----------------------------~~~~~~~~~~~~~pdiv~~S~~~~~--~ 52 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLS----------------------------ADDIVEDIKELLKPDVVGISLMTSA--I 52 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCC----------------------------HHHHHHHHHHhcCCCEEEEeecccc--H
Confidence 356667778888887766643221 1222333322 47899998753221 1
Q ss_pred cCChHHHHHHHHHHhc
Q 027785 101 AMNDSVIDLVRKFSNS 116 (219)
Q Consensus 101 ~~~~~l~~~l~~~~~~ 116 (219)
.....+.+.+|+...+
T Consensus 53 ~~~~~~~~~ik~~~p~ 68 (127)
T cd02068 53 YEALELAKIAKEVLPN 68 (127)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 2334566666665543
No 338
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=23.33 E-value=1.8e+02 Score=23.25 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=28.3
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 82 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 82 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
++.+.|+++|.|-.. ......+.-+.++..+-|+|.++++
T Consensus 68 SPRhADvliVtG~VT----~km~~~L~rlyeqmPePK~VIA~Ga 107 (225)
T CHL00023 68 SPRQADLILTAGTVT----MKMAPSLVRLYEQMPEPKYVIAMGA 107 (225)
T ss_pred CcccceEEEEecCCc----cccHHHHHHHHHhcCCCCeEEEEcc
Confidence 467899999988432 2345566666677778899888754
No 339
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=23.19 E-value=4e+02 Score=22.15 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=25.1
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
...|.||-.||.... .+-+++...+.++.++.+|.+-+
T Consensus 77 ~~~d~IIaiGGGs~~------D~aK~ia~~~~~~~p~i~iPTt~ 114 (332)
T cd07766 77 AEVDAVIAVGGGSTL------DTAKAVAALLNRGLPIIIVPTTA 114 (332)
T ss_pred cCcCEEEEeCCchHH------HHHHHHHHHhcCCCCEEEEeCCC
Confidence 468999988876543 24444444555688998888643
No 340
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=23.17 E-value=1.2e+02 Score=22.33 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=44.1
Q ss_pred cCCeEEEEehhHHHHHhCcccCCceEeeCCCCH-HHHHHCCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHc
Q 027785 116 SGKTIASICHGQLILAAADVVKGRKCTAYPPVK-PVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALG 194 (219)
Q Consensus 116 ~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~-~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~ 194 (219)
.|-.+++.+.|..+.| .=.+|-++..-|... ..+.+ -..|-|+++=++-.-+.+++..+++.+.
T Consensus 58 ~GIliCGtGiG~siaA--NK~~GIRAA~~~d~~~A~~ar-------------~hNnaNVL~lG~r~~g~~~a~~iv~~fL 122 (141)
T TIGR01118 58 LGIVIDAYGAGSFMVA--TKIKGMIAAEVSDERSAYMTR-------------GHNNARMITVGAEIVGDELAKNIVKAFV 122 (141)
T ss_pred eEEEEcCCCHhHhhhh--hcCCCeEEEEECCHHHHHHHH-------------HHcCCcEEEECccccCHHHHHHHHHHHH
Confidence 3444555555555544 555676666555433 22222 3467788888888888999999999877
Q ss_pred ccccc
Q 027785 195 GTITG 199 (219)
Q Consensus 195 ~~~~~ 199 (219)
.....
T Consensus 123 ~t~f~ 127 (141)
T TIGR01118 123 EGKYD 127 (141)
T ss_pred cCCCC
Confidence 66553
No 341
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=22.96 E-value=2.7e+02 Score=23.75 Aligned_cols=96 Identities=17% Similarity=0.145 Sum_probs=47.8
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
+|+.|+.-++....-...+.+.|+.+|+++..+.-......+ .+..-. .+ -..+.+...+.-|.
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k------------~~~~v~--~~--~~~~~~~~~dr~~~ 87 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHK------------TLSTLS--DL--VERALALGATRRSV 87 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCC------------CHHHHH--HH--HHHHHHcCCCCCcE
Confidence 577777766655443345677888888876543322111000 000000 00 00111112223458
Q ss_pred EEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 89 liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
|+-.||.... .+-+++...+.++.++..|.+.
T Consensus 88 IIAvGGGsv~------D~ak~~A~~~~rgip~I~IPTT 119 (355)
T cd08197 88 IVALGGGVVG------NIAGLLAALLFRGIRLVHIPTT 119 (355)
T ss_pred EEEECCcHHH------HHHHHHHHHhccCCCEEEecCc
Confidence 8877875432 2344444455678999999984
No 342
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=22.95 E-value=5.6e+02 Score=23.08 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=60.0
Q ss_pred EEecCCCCchhhHHHHHHHHhC-C----CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 13 LLCGDYMEDYEAMVPFQALLAF-G----VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 13 il~~~g~~~~e~~~~~~~l~~a-g----~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
|.++||.++.....+..++... | +.+.+.++.+....+.. .-. ++..+-...|..-.....-++.+.|
T Consensus 230 v~i~pGADEvg~~LlaRa~n~~~~~~P~v~v~Ys~~~g~~~vp~Y-Ed~------pl~esv~~hI~aaGg~~~~~~~~AD 302 (497)
T PF13552_consen 230 VMIYPGADEVGLLLLARAYNEYKGYKPRVYVRYSSGNGADTVPPY-EDR------PLGESVKEHIRAAGGVLVDSPEEAD 302 (497)
T ss_pred eeeeCChhHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCccCCCC-CCC------CHHHHHHHHHHhcCCEEcCCCCCCC
Confidence 6778999988888888877764 2 34444444443211110 000 1111100011111101001234566
Q ss_pred EEEEc--CCCCcccc-----------cCChHHHHHHHHHHhcCCeEEE----EehhH-----HHHHhCcccCCceEe
Q 027785 88 GLVIP--GGRAPEYL-----------AMNDSVIDLVRKFSNSGKTIAS----ICHGQ-----LILAAADVVKGRKCT 142 (219)
Q Consensus 88 ~liip--GG~~~~~~-----------~~~~~l~~~l~~~~~~~~~v~~----ic~G~-----~~La~aGlL~g~~~t 142 (219)
.++.. ++.+.... .....+.+.|++..++|++|+- .++|+ -.|.+.++|....+=
T Consensus 303 ~vL~Vntp~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~l~~G~~VaiaDva~~NGad~~L~~~L~~~~~l~~L~aY 379 (497)
T PF13552_consen 303 LVLAVNTPGDGMTEESEQFANDDTPYRNLREFVDRIEEYLAKGKPVAIADVAYANGADNALMELLLKNGLLDKLAAY 379 (497)
T ss_pred EEEEEecCCCccccccccccccccccccHHHHHHHHHHHHHcCCcEEEEEcCcCCCccHHHHHHHHhCCchhhhhee
Confidence 65553 33322111 2346788899999999999873 34443 244455666554433
No 343
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=22.80 E-value=2.3e+02 Score=24.03 Aligned_cols=63 Identities=25% Similarity=0.341 Sum_probs=42.1
Q ss_pred EEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEe
Q 027785 89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWI 159 (219)
Q Consensus 89 liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~ 159 (219)
|+..||..|. -|..+...++...+.+.-|.++..|-. ||+++.-+...|...+.+.+.|+...
T Consensus 5 Il~sGG~apG---~N~~i~~~v~~~~~~g~~v~G~~~G~~-----GL~~~~~~~l~~~~v~~~~~~gGs~L 67 (338)
T cd00363 5 VLTSGGDAPG---MNAAIRGVVRSAIAEGLEVYGIYEGYA-----GLVEGDIKELDWESVSDIINRGGTII 67 (338)
T ss_pred EEccCCCchh---HHHHHHHHHHHHHHCCCEEEEEecChH-----HhCCCCeEeCCHHHhcchhhCCCeec
Confidence 4445665543 467788888888888889999999986 77777665555554444444454443
No 344
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=22.79 E-value=1.5e+02 Score=25.44 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=30.8
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
-+||+|+-.+|+-+...-.....|+.++..+++.-.+
T Consensus 138 ~~ri~vvGieg~~DFqp~l~Aa~L~~a~~~~~t~~l~ 174 (421)
T COG3075 138 AKRIAVVGIEGLHDFQPQLAAANLRQAGLPVTTAELN 174 (421)
T ss_pred chheEEEeeccccccCHHHHHHHHHHcCCcceecccc
Confidence 4789999999999888889999999999777665444
No 345
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=22.47 E-value=3.6e+02 Score=23.08 Aligned_cols=64 Identities=25% Similarity=0.398 Sum_probs=46.0
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEe
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWI 159 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~ 159 (219)
+++..||..|. -|..+...++.....+.-|.++=.|.. ||++|.-....|.....+.+.|+...
T Consensus 6 aIlTSGGdaPG---mNa~Iravvr~a~~~g~eV~Gi~~Gy~-----GL~~~~i~~l~~~~v~~~~~~GGT~l 69 (347)
T COG0205 6 AILTSGGDAPG---MNAVIRAVVRTAIKEGLEVFGIYNGYL-----GLLEGDIKPLTREDVDDLINRGGTFL 69 (347)
T ss_pred EEEccCCCCcc---HHHHHHHHHHHHHHcCCEEEEEecchh-----hhcCCcceeccccchhHHHhcCCeEE
Confidence 34555666653 477888899998889999999999986 88888655566665566666554443
No 346
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=22.45 E-value=1.1e+02 Score=22.43 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=43.7
Q ss_pred cCCeEEEEehhHHHHHhCcccCCceEeeCCCCH-HHHHHCCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHc
Q 027785 116 SGKTIASICHGQLILAAADVVKGRKCTAYPPVK-PVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALG 194 (219)
Q Consensus 116 ~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~-~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~ 194 (219)
.|-.|++.+.|..+.| .=.+|-++..-+... ..+.+ -..|-|+++=++-.-+.+++..+++.+.
T Consensus 58 ~GIliCGTGiG~siaA--NK~~GIRAA~~~d~~~A~~ar-------------~hNnaNVL~lG~r~ig~~~a~~iv~~fL 122 (142)
T PRK08621 58 LGIVIDAYGAGSFMVA--TKIKGMVAAEVSDERSAYMTR-------------GHNNARMITMGSEIVGDGLAKNIIKGFV 122 (142)
T ss_pred eEEEEcCCChhhhhhh--hcCCCeEEEEECCHHHHHHHH-------------HHcCCcEEEECccccCHHHHHHHHHHHH
Confidence 3444555555555444 455666666554433 22222 3567888888888888999999999777
Q ss_pred ccccc
Q 027785 195 GTITG 199 (219)
Q Consensus 195 ~~~~~ 199 (219)
.....
T Consensus 123 ~t~f~ 127 (142)
T PRK08621 123 EGKYD 127 (142)
T ss_pred cCCCC
Confidence 66553
No 347
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.43 E-value=3.3e+02 Score=20.21 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=30.9
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
.+-|++|+....| ..+.+.+.++.+.++|.++.+|+.-
T Consensus 71 ~~~Dv~I~iS~sG-----~t~~~i~~~~~ak~~g~~ii~IT~~ 108 (179)
T TIGR03127 71 KKGDLLIAISGSG-----ETESLVTVAKKAKEIGATVAAITTN 108 (179)
T ss_pred CCCCEEEEEeCCC-----CcHHHHHHHHHHHHCCCeEEEEECC
Confidence 4678888876544 5788999999999999999999873
No 348
>PTZ00188 adrenodoxin reductase; Provisional
Probab=22.36 E-value=2.7e+02 Score=25.19 Aligned_cols=37 Identities=14% Similarity=-0.157 Sum_probs=25.8
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKS 47 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~ 47 (219)
++||+|+ |-=+..+......+...|++|+++-....|
T Consensus 39 ~krVAIV---GaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 39 PFKVGII---GAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CCEEEEE---CCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 6788877 444557777777777779888887665443
No 349
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.28 E-value=1.6e+02 Score=23.60 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=20.1
Q ss_pred EEEEEecCCCC---chhhHHHHHHHHhCCCeEEEec
Q 027785 10 SVLLLCGDYME---DYEAMVPFQALLAFGVSVDAAC 42 (219)
Q Consensus 10 kv~il~~~g~~---~~e~~~~~~~l~~ag~~v~~~s 42 (219)
||++++.+.-+ ..-..+..+.+.+.|+++.++.
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 36 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVVATT 36 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCEEEEec
Confidence 58888864222 2223345677778899887553
No 350
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=22.24 E-value=74 Score=26.13 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=27.9
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
..++|++++.||.| .++...+.+...+.||.+|-.|..
T Consensus 74 ~~~~D~ii~lGGDG--------T~L~~~~~~~~~~~Pilgin~G~l 111 (285)
T PF01513_consen 74 EEGVDLIIVLGGDG--------TFLRAARLFGDYDIPILGINTGTL 111 (285)
T ss_dssp CCCSSEEEEEESHH--------HHHHHHHHCTTST-EEEEEESSSS
T ss_pred ccCCCEEEEECCCH--------HHHHHHHHhccCCCcEEeecCCCc
Confidence 46899999999865 355555666667899999998864
No 351
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=22.15 E-value=1.8e+02 Score=23.74 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=25.0
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 82 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 82 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
++.++|+++|.|.-.. .....+.-+.++..+-|+|.++++
T Consensus 68 sPRhADIlLVtG~VT~----km~~~L~rlyeqmP~PK~VIAvGa 107 (264)
T PRK14819 68 SPRQADLMIVAGTVTK----KMAPQVVRLYNQMPEPRYVISMGA 107 (264)
T ss_pred CCCcceEEEEecCCch----hhHHHHHHHHHhccCCCeEEEEcc
Confidence 3567999999986432 222333334445667888887754
No 352
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=22.08 E-value=1.1e+02 Score=22.90 Aligned_cols=36 Identities=11% Similarity=0.058 Sum_probs=25.2
Q ss_pred CCEEEEEecCCCCc---hhhHHHHHHHHhCC---CeEEEecC
Q 027785 8 KRSVLLLCGDYMED---YEAMVPFQALLAFG---VSVDAACP 43 (219)
Q Consensus 8 ~~kv~il~~~g~~~---~e~~~~~~~l~~ag---~~v~~~s~ 43 (219)
+.||+|+....... .=+.+..+.|...| .+++++..
T Consensus 12 ~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~V 53 (154)
T PRK00061 12 GLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRV 53 (154)
T ss_pred CCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 56999999875443 45667778888888 45666644
No 353
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=22.07 E-value=2e+02 Score=24.39 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=34.8
Q ss_pred CCCCC-CCEEEEEec--CCCCchhhHHHHHHHHhCCCeEEEecCCC
Q 027785 3 NSKGG-KRSVLLLCG--DYMEDYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 3 ~~~~~-~~kv~il~~--~g~~~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
.||+. ++.|+|+.. -..++.++...++.|.+.+.++.+++...
T Consensus 158 ~~p~H~sREVLii~sslsT~DPgdi~~tI~~lk~~kIRvsvIgLsa 203 (378)
T KOG2807|consen 158 HMPGHVSREVLIIFSSLSTCDPGDIYETIDKLKAYKIRVSVIGLSA 203 (378)
T ss_pred CCCcccceEEEEEEeeecccCcccHHHHHHHHHhhCeEEEEEeech
Confidence 46654 477888875 46777899999999999999999998865
No 354
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=21.99 E-value=2.3e+02 Score=22.62 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=28.0
Q ss_pred CCEEEEEecCC-C--------CchhhHHHHHHHHhCCCeEEEecC
Q 027785 8 KRSVLLLCGDY-M--------EDYEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 8 ~~kv~il~~~g-~--------~~~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
++++++|+.+. | ...|...+.++|+..||+|.+...
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~d 51 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNN 51 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecC
Confidence 67898888653 2 135889999999999999988654
No 355
>PRK07116 flavodoxin; Provisional
Probab=21.87 E-value=94 Score=22.93 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=26.8
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
..+||.|+|....-.. ...+.+.+||++..-.+++++.+|+
T Consensus 74 l~~~D~Iiig~Pv~~~--~~p~~v~~fl~~~~l~~k~v~~f~T 114 (160)
T PRK07116 74 IAEYDVIFLGFPIWWY--VAPRIINTFLESYDFSGKTVIPFAT 114 (160)
T ss_pred HHhCCEEEEECChhcc--ccHHHHHHHHHhcCCCCCEEEEEEe
Confidence 3479998884432111 2346788999876556788777766
No 356
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=21.86 E-value=2e+02 Score=24.18 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=25.2
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
...|.|+-.||....+ +-+++...+.++.++.+|.+-
T Consensus 80 ~r~d~IIavGGGsv~D------~aK~iA~~~~~~~p~i~VPTT 116 (344)
T TIGR01357 80 DRSSTIIALGGGVVGD------LAGFVAATYMRGIRFIQVPTT 116 (344)
T ss_pred CCCCEEEEEcChHHHH------HHHHHHHHHccCCCEEEecCc
Confidence 3568999888865432 334444456678999999985
No 357
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=21.77 E-value=1.7e+02 Score=23.03 Aligned_cols=29 Identities=7% Similarity=-0.222 Sum_probs=15.9
Q ss_pred EEEEEecCC---CCchhhHHHHHHHHhC---CCeE
Q 027785 10 SVLLLCGDY---MEDYEAMVPFQALLAF---GVSV 38 (219)
Q Consensus 10 kv~il~~~g---~~~~e~~~~~~~l~~a---g~~v 38 (219)
||++++.+- |...-+.++.+.+.+. |+.+
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 35 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLIS 35 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCee
Confidence 588888542 2222333455666667 8743
No 358
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=21.06 E-value=4.6e+02 Score=21.33 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=30.4
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCC
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (219)
||+|--=||+....+..+.+.|+.. .+|.+++|...
T Consensus 2 ~ILlTNDDGi~a~Gi~aL~~~l~~~-~~V~VvAP~~~ 37 (253)
T PRK13935 2 NILVTNDDGITSPGIIILAEYLSEK-HEVFVVAPDKE 37 (253)
T ss_pred eEEEECCCCCCCHHHHHHHHHHHhC-CcEEEEccCCC
Confidence 6777777899999999999999764 58999999764
No 359
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=20.99 E-value=1.7e+02 Score=22.86 Aligned_cols=34 Identities=6% Similarity=-0.176 Sum_probs=20.9
Q ss_pred EEEEecC---CCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 11 VLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 11 v~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
|++++.+ .|...-+.++.+.+.+.|+++.+....
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~ 38 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKELGYELTVLDAQ 38 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHcCceEEecCCC
Confidence 6666653 222333446667777889988776543
No 360
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=20.90 E-value=5.2e+02 Score=21.93 Aligned_cols=91 Identities=13% Similarity=0.080 Sum_probs=46.7
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
.+||+|+=..|+-..|+...+.--.-...++..++.....+. .+. -.+..+... .+++.+..+.|
T Consensus 4 ~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~-------------~~~-~~~~~~~v~-~~~~~~~~~~D 68 (336)
T PRK08040 4 GWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGE-------------TLR-FGGKSVTVQ-DAAEFDWSQAQ 68 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCc-------------eEE-ECCcceEEE-eCchhhccCCC
Confidence 469999999998887776544321013456665544322111 111 111122221 22333224689
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEE
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIA 121 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~ 121 (219)
++|++.+.+ ...+|..++.++|..|.
T Consensus 69 vvf~a~p~~--------~s~~~~~~~~~~g~~VI 94 (336)
T PRK08040 69 LAFFVAGRE--------ASAAYAEEATNAGCLVI 94 (336)
T ss_pred EEEECCCHH--------HHHHHHHHHHHCCCEEE
Confidence 999876443 34455555655565544
No 361
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=20.76 E-value=59 Score=20.07 Aligned_cols=13 Identities=31% Similarity=0.710 Sum_probs=11.0
Q ss_pred cCCeEEEEehhHH
Q 027785 116 SGKTIASICHGQL 128 (219)
Q Consensus 116 ~~~~v~~ic~G~~ 128 (219)
+++.++++|.|-.
T Consensus 9 ~~~~i~GVcaGlA 21 (61)
T PF04024_consen 9 DDRVIAGVCAGLA 21 (61)
T ss_pred CCCEEeeeHHHHH
Confidence 5789999999864
No 362
>COG3233 Predicted deacetylase [General function prediction only]
Probab=20.67 E-value=1.8e+02 Score=23.18 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=30.2
Q ss_pred ccCCCCCCcc-EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEE
Q 027785 78 FDEIDPTKYD-GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIA 121 (219)
Q Consensus 78 ~~~~~~~~~D-~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~ 121 (219)
+++.....-. .++||--.+-..+..++.+.+||.+.-++|--++
T Consensus 27 ide~~~~~~t~lLViPn~~~~~~l~~d~rf~~~l~~r~e~Gdel~ 71 (233)
T COG3233 27 IDEYGAQNSTVLLVIPNHANDYPLSKDPRFVDLLTEREEEGDELV 71 (233)
T ss_pred HHHhCCCCceEEEEeeccCCCCCcccChHHHHHHHHHHhcCCEEE
Confidence 3443333333 4777765554457789999999999999887654
No 363
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=20.65 E-value=5e+02 Score=21.62 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=23.8
Q ss_pred CEEEEEecCC-C-CchhhHHHHHHHHhCCCeEEE
Q 027785 9 RSVLLLCGDY-M-EDYEAMVPFQALLAFGVSVDA 40 (219)
Q Consensus 9 ~kv~il~~~g-~-~~~e~~~~~~~l~~ag~~v~~ 40 (219)
-+|+|+..-+ . ....+....+.|+..||++.+
T Consensus 2 ~~I~viAPSs~~~~~~~~~~~i~~L~~~G~~v~~ 35 (305)
T PRK11253 2 SLFHLIAPSGYPIDQAAALRGVQRLTDAGHQVEN 35 (305)
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 3799999874 4 444567778889999998754
No 364
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=20.43 E-value=1.9e+02 Score=24.19 Aligned_cols=72 Identities=11% Similarity=0.054 Sum_probs=49.9
Q ss_pred CChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc-ccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEEcCCeEeCCCCC
Q 027785 102 MNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-VVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYE 180 (219)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG-lL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~ 180 (219)
..+++...++...+++.++.-++.|+-+|..-+ +++|.-+... . + . .+..+++.++++...
T Consensus 41 ~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~-~----~----------~---~i~~~~~~v~a~AG~ 102 (302)
T PRK14650 41 TIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEIDFPIIYTG-H----L----------N---KIEIHDNQIVAECGT 102 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccceEEEEEC-C----c----------C---cEEEeCCEEEEEeCC
Confidence 446788888888888999999999998877654 4665332210 0 1 0 133345667777778
Q ss_pred CHHHHHHHHHH
Q 027785 181 GHPEFIRLFLK 191 (219)
Q Consensus 181 s~~~~~l~li~ 191 (219)
.+.+++...++
T Consensus 103 ~~~~l~~~~~~ 113 (302)
T PRK14650 103 NFEDLCKFALQ 113 (302)
T ss_pred cHHHHHHHHHH
Confidence 99999988886
No 365
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=20.25 E-value=5.3e+02 Score=21.70 Aligned_cols=119 Identities=17% Similarity=0.147 Sum_probs=63.0
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCC---CCC---CCCCCcccccCCCcceeccccCCccccccCccCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG---KKS---GDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI 81 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~---~~~---~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~ 81 (219)
+.||+|+=.-| .+..|+..|-+.+..+..++.- ..| .|..++... ..+. .+..+..+.+.
T Consensus 28 ~~KVAvlGAaG----GIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~-----s~V~-----g~~g~~~L~~a 93 (345)
T KOG1494|consen 28 GLKVAVLGAAG----GIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTN-----SSVV-----GFTGADGLENA 93 (345)
T ss_pred cceEEEEecCC----ccCccHHHHHhcCcccceeeeeecccCCcccccccccCCC-----Ccee-----ccCChhHHHHH
Confidence 56899988776 6667777777777554433321 111 121111111 0111 12223345443
Q ss_pred CCCCccEEEEcCCC----Ccc--c-ccCChHHHHHHHHHHhcCCe---EEEEe--------hhHHHHHhCcccCCceE
Q 027785 82 DPTKYDGLVIPGGR----APE--Y-LAMNDSVIDLVRKFSNSGKT---IASIC--------HGQLILAAADVVKGRKC 141 (219)
Q Consensus 82 ~~~~~D~liipGG~----~~~--~-~~~~~~l~~~l~~~~~~~~~---v~~ic--------~G~~~La~aGlL~g~~~ 141 (219)
....|+++||.|- |.. + +..+..+..-|.....+..| |.-|. ..+-+|-++|..+.++.
T Consensus 94 -l~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkkl 170 (345)
T KOG1494|consen 94 -LKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKL 170 (345)
T ss_pred -hcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccce
Confidence 4689999999883 321 1 23344555555544444333 33333 35567888899888874
No 366
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=20.13 E-value=4e+02 Score=22.11 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=28.1
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCC-----eEEEEehhHHHHHhCc--ccCCceEeeC
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGK-----TIASICHGQLILAAAD--VVKGRKCTAY 144 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~-----~v~~ic~G~~~La~aG--lL~g~~~t~~ 144 (219)
..++|+|++.+. + +....+++++.+.|- ++.+.+.....+...| .++|...+++
T Consensus 186 ~~~pd~v~~~~~-~-------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~ 246 (348)
T cd06355 186 AAKPDVVVSTVN-G-------DSNVAFFKQLKAAGITASKVPVLSFSVAEEELRGIGPENLAGHYAAWN 246 (348)
T ss_pred HhCCCEEEEecc-C-------CchHHHHHHHHHcCCCccCCeeEEccccHHHHhhcChHhhcCCEEecc
Confidence 346899988542 2 224666777666552 3444333333343333 4566555443
Done!