Query 027785
Match_columns 219
No_of_seqs 178 out of 1346
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 02:00:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hcj_A THIJ/PFPI domain protei 100.0 3E-43 1E-47 268.8 15.7 173 3-195 3-175 (177)
2 3er6_A Putative transcriptiona 100.0 6.2E-42 2.1E-46 268.8 12.4 188 1-208 1-200 (209)
3 3ewn_A THIJ/PFPI family protei 100.0 2.4E-41 8.1E-46 272.0 14.0 182 8-210 23-208 (253)
4 3l18_A Intracellular protease 100.0 7.1E-41 2.4E-45 254.3 13.9 166 8-193 2-167 (168)
5 3efe_A THIJ/PFPI family protei 100.0 4E-41 1.4E-45 264.8 12.5 190 8-219 5-208 (212)
6 3gra_A Transcriptional regulat 100.0 2.8E-41 9.7E-46 263.7 10.7 179 8-208 5-192 (202)
7 3noq_A THIJ/PFPI family protei 100.0 7.4E-41 2.5E-45 266.3 12.7 182 8-211 5-189 (231)
8 4e08_A DJ-1 beta; flavodoxin-l 100.0 1.3E-40 4.3E-45 257.8 11.3 173 8-200 5-179 (190)
9 2vrn_A Protease I, DR1199; cys 100.0 1.1E-39 3.8E-44 252.4 15.0 173 8-200 9-188 (190)
10 3mgk_A Intracellular protease/ 100.0 4.2E-40 1.4E-44 258.7 12.6 179 8-207 4-188 (211)
11 3ot1_A 4-methyl-5(B-hydroxyeth 100.0 2.1E-40 7.1E-45 260.0 9.2 189 8-218 9-204 (208)
12 4gdh_A DJ-1, uncharacterized p 100.0 9.3E-40 3.2E-44 253.6 11.5 180 9-206 5-193 (194)
13 2rk3_A Protein DJ-1; parkinson 100.0 1.4E-39 4.9E-44 253.2 12.5 174 8-200 3-179 (197)
14 1oi4_A Hypothetical protein YH 100.0 8.2E-39 2.8E-43 248.2 15.9 168 8-194 23-192 (193)
15 3fse_A Two-domain protein cont 100.0 3.6E-38 1.2E-42 264.2 16.5 172 8-198 10-182 (365)
16 3uk7_A Class I glutamine amido 100.0 1.3E-37 4.5E-42 265.9 17.2 201 8-208 12-212 (396)
17 3f5d_A Protein YDEA; unknow pr 100.0 5.4E-38 1.8E-42 245.6 12.2 172 8-206 3-181 (206)
18 2ab0_A YAJL; DJ-1/THIJ superfa 100.0 1.4E-38 4.8E-43 249.0 7.7 191 8-217 2-198 (205)
19 3bhn_A THIJ/PFPI domain protei 100.0 7.7E-38 2.6E-42 249.2 8.9 177 7-208 19-201 (236)
20 2fex_A Conserved hypothetical 100.0 6.1E-37 2.1E-41 236.7 13.2 170 9-199 2-175 (188)
21 1u9c_A APC35852; structural ge 100.0 2.1E-36 7.3E-41 239.7 15.4 181 8-196 5-223 (224)
22 3uk7_A Class I glutamine amido 100.0 4.1E-36 1.4E-40 256.7 15.7 190 8-197 205-394 (396)
23 3kkl_A Probable chaperone prot 100.0 2.9E-35 1E-39 235.4 13.9 190 8-197 3-239 (244)
24 3cne_A Putative protease I; st 100.0 1.1E-35 3.6E-40 227.2 10.1 159 8-193 2-174 (175)
25 1rw7_A YDR533CP; alpha-beta sa 100.0 4.3E-35 1.5E-39 234.9 13.3 187 9-195 4-237 (243)
26 3n7t_A Macrophage binding prot 100.0 1.7E-34 6E-39 231.0 14.2 189 8-196 9-244 (247)
27 1n57_A Chaperone HSP31, protei 100.0 1.6E-34 5.5E-39 236.9 11.9 189 8-198 48-282 (291)
28 1vhq_A Enhancing lycopene bios 100.0 2E-33 6.7E-38 223.8 10.1 180 8-198 6-212 (232)
29 3l3b_A ES1 family protein; ssg 100.0 5.6E-32 1.9E-36 215.9 10.6 168 8-181 23-217 (242)
30 1sy7_A Catalase 1; heme oxidat 99.9 1.5E-24 5E-29 194.7 11.4 151 8-195 534-698 (715)
31 3ttv_A Catalase HPII; heme ori 99.8 7.9E-21 2.7E-25 169.4 11.3 112 8-136 600-711 (753)
32 2iuf_A Catalase; oxidoreductas 99.7 2.3E-17 8E-22 146.7 11.5 130 8-195 529-677 (688)
33 3ej6_A Catalase-3; heme, hydro 99.7 1.6E-16 5.4E-21 141.0 11.6 104 8-136 537-649 (688)
34 3d54_D Phosphoribosylformylgly 99.3 4.7E-12 1.6E-16 98.7 6.9 93 9-139 3-101 (213)
35 3m3p_A Glutamine amido transfe 98.8 3E-08 1E-12 79.1 9.3 94 8-133 3-98 (250)
36 3l7n_A Putative uncharacterize 98.7 7.4E-08 2.5E-12 76.1 10.7 93 9-133 1-100 (236)
37 1q7r_A Predicted amidotransfer 98.7 2.5E-08 8.5E-13 78.0 5.7 86 8-133 23-110 (219)
38 2nv0_A Glutamine amidotransfer 98.6 2.7E-08 9.1E-13 76.4 5.4 85 9-133 2-88 (196)
39 2iss_D Glutamine amidotransfer 98.5 7E-08 2.4E-12 74.8 5.1 86 8-133 20-107 (208)
40 3ugj_A Phosphoribosylformylgly 98.5 2.9E-07 1E-11 87.8 9.8 100 8-139 1047-1159(1303)
41 1ka9_H Imidazole glycerol phos 98.5 2.1E-07 7.2E-12 71.6 6.9 86 9-133 3-91 (200)
42 2ywd_A Glutamine amidotransfer 98.5 1.7E-07 5.7E-12 71.5 5.0 85 9-133 3-90 (191)
43 1wl8_A GMP synthase [glutamine 98.4 9.2E-07 3.1E-11 67.3 7.2 86 11-133 3-88 (189)
44 2abw_A PDX2 protein, glutamina 98.3 3.5E-07 1.2E-11 71.7 4.3 86 8-133 3-96 (227)
45 2ywj_A Glutamine amidotransfer 98.2 2.3E-06 7.9E-11 64.9 6.8 81 10-133 2-84 (186)
46 1gpw_B Amidotransferase HISH; 98.2 2.9E-06 9.9E-11 65.1 6.7 85 10-134 2-94 (201)
47 1qdl_B Protein (anthranilate s 98.2 2.2E-06 7.4E-11 65.6 5.5 89 11-133 4-93 (195)
48 4gud_A Imidazole glycerol phos 98.1 7.6E-07 2.6E-11 68.9 2.1 87 8-133 2-88 (211)
49 1o1y_A Conserved hypothetical 98.1 9.5E-06 3.3E-10 64.1 7.7 92 10-133 14-109 (239)
50 1a9x_B Carbamoyl phosphate syn 98.0 1.4E-05 4.7E-10 67.2 8.4 87 9-133 191-277 (379)
51 3fij_A LIN1909 protein; 11172J 97.9 1.3E-05 4.3E-10 63.9 6.1 49 85-133 61-124 (254)
52 2vpi_A GMP synthase; guanine m 97.9 2.8E-06 9.6E-11 66.2 1.1 87 9-133 25-112 (218)
53 2a9v_A GMP synthase; structura 97.8 5.8E-05 2E-09 58.4 7.1 86 9-133 14-101 (212)
54 1jvn_A Glutamine, bifunctional 97.7 5.4E-05 1.9E-09 66.9 6.0 88 9-133 5-95 (555)
55 1l9x_A Gamma-glutamyl hydrolas 97.6 7.6E-05 2.6E-09 61.3 5.8 96 9-133 31-140 (315)
56 3tqi_A GMP synthase [glutamine 97.6 7.8E-05 2.7E-09 65.5 6.1 89 8-133 10-98 (527)
57 3l4e_A Uncharacterized peptida 97.6 3.4E-05 1.2E-09 59.5 3.2 98 8-133 27-129 (206)
58 2v4u_A CTP synthase 2; pyrimid 97.6 7.7E-05 2.6E-09 60.5 5.0 46 85-133 90-135 (289)
59 3uow_A GMP synthetase; structu 97.5 0.00024 8.3E-09 62.7 8.2 91 9-133 8-99 (556)
60 3r75_A Anthranilate/para-amino 97.5 0.00071 2.4E-08 60.7 10.5 89 8-133 446-537 (645)
61 2h2w_A Homoserine O-succinyltr 97.5 0.00066 2.2E-08 55.4 9.3 56 77-132 103-162 (312)
62 1fy2_A Aspartyl dipeptidase; s 97.5 4E-05 1.4E-09 60.1 2.0 50 85-134 79-130 (229)
63 2vdj_A Homoserine O-succinyltr 97.3 0.00044 1.5E-08 56.3 6.5 55 78-132 92-150 (301)
64 2w7t_A CTP synthetase, putativ 97.3 0.00026 8.9E-09 56.9 4.9 45 85-132 67-111 (273)
65 1gpm_A GMP synthetase, XMP ami 97.0 0.00039 1.3E-08 61.0 4.0 89 8-133 7-95 (525)
66 1i1q_B Anthranilate synthase c 97.0 0.0012 4.1E-08 50.0 6.2 91 10-133 2-92 (192)
67 3nva_A CTP synthase; rossman f 96.8 0.0014 4.9E-08 56.9 5.7 48 83-133 348-395 (535)
68 1s1m_A CTP synthase; CTP synth 96.5 0.0032 1.1E-07 55.2 5.8 47 84-133 342-388 (545)
69 1vco_A CTP synthetase; tetrame 96.5 0.0028 9.5E-08 55.7 5.2 47 84-133 354-400 (550)
70 2ywb_A GMP synthase [glutamine 96.3 0.0024 8.2E-08 55.7 3.8 75 25-133 13-87 (503)
71 2vxo_A GMP synthase [glutamine 96.0 0.0019 6.6E-08 58.4 1.4 89 8-133 29-117 (697)
72 3en0_A Cyanophycinase; serine 95.6 0.0074 2.5E-07 48.8 3.4 48 85-132 110-160 (291)
73 3rht_A (gatase1)-like protein; 91.2 0.96 3.3E-05 35.7 8.1 83 8-125 4-87 (259)
74 2zuv_A Lacto-N-biose phosphory 88.1 2.1 7E-05 38.4 8.3 89 8-127 438-546 (759)
75 4e5v_A Putative THUA-like prot 86.6 11 0.00036 30.0 12.3 91 8-128 4-97 (281)
76 2r47_A Uncharacterized protein 79.4 0.78 2.7E-05 33.1 1.6 52 84-136 83-135 (157)
77 2qv7_A Diacylglycerol kinase D 78.8 3.8 0.00013 33.3 5.9 37 8-44 24-64 (337)
78 1u0t_A Inorganic polyphosphate 78.3 7 0.00024 31.3 7.3 103 9-127 5-109 (307)
79 3tty_A Beta-GAL, beta-galactos 75.7 9.8 0.00033 34.2 8.1 61 23-124 426-486 (675)
80 3s40_A Diacylglycerol kinase; 71.8 4.6 0.00016 32.3 4.6 37 8-44 8-48 (304)
81 1z0s_A Probable inorganic poly 71.7 7.3 0.00025 31.0 5.6 73 8-127 29-101 (278)
82 3f6r_A Flavodoxin; FMN binding 70.1 13 0.00044 25.7 6.2 84 9-126 2-94 (148)
83 1t0b_A THUA-like protein; treh 69.5 12 0.00041 29.1 6.4 71 27-127 37-107 (252)
84 1jg7_A BGT, DNA beta-glucosylt 68.4 17 0.00059 27.9 6.7 59 10-94 2-67 (351)
85 2a5l_A Trp repressor binding p 65.8 11 0.00037 27.6 5.3 103 9-126 6-117 (200)
86 2bon_A Lipid kinase; DAG kinas 62.2 5.9 0.0002 32.1 3.4 36 9-44 30-66 (332)
87 2an1_A Putative kinase; struct 62.1 6.6 0.00023 31.1 3.6 90 9-127 6-97 (292)
88 3m9w_A D-xylose-binding peripl 59.0 9.8 0.00033 29.8 4.2 37 8-44 2-41 (313)
89 3l49_A ABC sugar (ribose) tran 58.8 13 0.00046 28.5 4.9 38 8-45 5-45 (291)
90 2gk3_A Putative cytoplasmic pr 57.7 12 0.0004 29.2 4.3 77 23-125 41-126 (256)
91 2ark_A Flavodoxin; FMN, struct 56.6 26 0.00089 25.4 5.9 83 9-125 5-96 (188)
92 3hly_A Flavodoxin-like domain; 56.1 11 0.00036 26.9 3.5 35 10-44 2-38 (161)
93 3re1_A Uroporphyrinogen-III sy 52.8 14 0.00048 28.8 4.0 101 4-135 10-113 (269)
94 3d3j_A Enhancer of mRNA-decapp 50.5 94 0.0032 24.8 10.5 126 9-143 133-259 (306)
95 1kwg_A Beta-galactosidase; TIM 50.1 28 0.00096 30.9 6.0 62 23-127 426-487 (645)
96 3fni_A Putative diflavin flavo 49.4 36 0.0012 24.0 5.5 91 8-126 4-96 (159)
97 5nul_A Flavodoxin; electron tr 48.4 23 0.00079 24.0 4.2 42 84-126 44-88 (138)
98 3bio_A Oxidoreductase, GFO/IDH 47.8 1E+02 0.0034 24.3 8.8 30 84-121 64-93 (304)
99 2q9u_A A-type flavoprotein; fl 47.2 79 0.0027 25.8 8.1 42 84-127 306-351 (414)
100 3uug_A Multiple sugar-binding 46.7 13 0.00045 29.2 3.1 87 8-125 3-92 (330)
101 1ydg_A Trp repressor binding p 44.7 35 0.0012 25.1 5.0 38 8-45 6-45 (211)
102 3l6u_A ABC-type sugar transpor 43.9 12 0.00043 28.7 2.4 37 8-44 8-47 (293)
103 2q62_A ARSH; alpha/beta, flavo 42.8 27 0.00092 27.0 4.2 39 8-46 34-76 (247)
104 2zki_A 199AA long hypothetical 42.3 25 0.00086 25.5 3.8 36 9-45 5-42 (199)
105 3gbv_A Putative LACI-family tr 42.3 21 0.0007 27.5 3.5 35 8-42 8-47 (304)
106 3bbl_A Regulatory protein of L 42.1 60 0.002 24.8 6.2 37 8-44 4-47 (287)
107 3jy6_A Transcriptional regulat 41.4 30 0.001 26.3 4.3 39 7-45 6-47 (276)
108 4hs4_A Chromate reductase; tri 40.8 28 0.00094 25.8 3.8 40 84-126 72-118 (199)
109 1y80_A Predicted cobalamin bin 39.4 56 0.0019 24.2 5.4 36 9-44 89-125 (210)
110 3iwt_A 178AA long hypothetical 39.2 22 0.00077 25.7 3.1 35 8-42 15-60 (178)
111 2i0f_A 6,7-dimethyl-8-ribityll 38.8 54 0.0018 23.5 4.9 92 9-121 13-114 (157)
112 3eod_A Protein HNR; response r 38.5 78 0.0027 20.4 6.6 32 8-42 7-38 (130)
113 1f4p_A Flavodoxin; electron tr 38.5 38 0.0013 23.2 4.1 42 84-127 46-94 (147)
114 3b6i_A Flavoprotein WRBA; flav 38.3 45 0.0015 24.0 4.7 37 9-45 2-41 (198)
115 3ty2_A 5'-nucleotidase SURE; s 38.3 59 0.002 25.5 5.4 38 8-46 11-48 (261)
116 3d3k_A Enhancer of mRNA-decapp 38.1 1.4E+02 0.0047 23.1 9.6 36 9-44 86-121 (259)
117 3tb6_A Arabinose metabolism tr 38.1 36 0.0012 26.0 4.3 38 8-45 15-55 (298)
118 3h75_A Periplasmic sugar-bindi 37.3 40 0.0014 26.7 4.6 86 8-125 3-94 (350)
119 3g1w_A Sugar ABC transporter; 37.3 16 0.00056 28.3 2.2 34 8-41 4-40 (305)
120 1l1s_A Hypothetical protein MT 37.2 45 0.0015 21.9 4.2 43 85-128 34-76 (113)
121 2fn9_A Ribose ABC transporter, 35.1 23 0.00078 27.2 2.7 37 8-44 2-41 (290)
122 1wcw_A Uroporphyrinogen III sy 34.6 40 0.0014 25.7 4.0 36 1-41 1-36 (261)
123 3k4h_A Putative transcriptiona 34.3 48 0.0016 25.3 4.5 37 8-44 8-52 (292)
124 2phj_A 5'-nucleotidase SURE; S 34.1 70 0.0024 24.9 5.2 37 9-46 2-38 (251)
125 3i9v_6 NADH-quinone oxidoreduc 33.7 31 0.001 25.5 3.0 42 82-127 71-112 (181)
126 3gv0_A Transcriptional regulat 33.2 41 0.0014 25.7 3.9 37 8-44 8-49 (288)
127 2b99_A Riboflavin synthase; lu 33.2 42 0.0014 24.1 3.5 92 8-123 2-98 (156)
128 2wqk_A 5'-nucleotidase SURE; S 33.1 73 0.0025 24.6 5.3 36 10-46 3-38 (251)
129 4fu0_A D-alanine--D-alanine li 32.8 30 0.001 28.0 3.2 37 8-44 3-44 (357)
130 3g85_A Transcriptional regulat 32.6 1E+02 0.0035 23.2 6.2 36 8-43 11-50 (289)
131 4ici_A Putative flavoprotein; 32.3 35 0.0012 24.5 3.1 42 83-126 85-126 (171)
132 4h3k_B RNA polymerase II subun 32.0 94 0.0032 23.4 5.4 40 4-45 21-60 (214)
133 1f0k_A MURG, UDP-N-acetylgluco 31.8 50 0.0017 26.1 4.3 36 9-45 7-44 (364)
134 3klb_A Putative flavoprotein; 31.7 31 0.0011 24.4 2.7 41 83-125 76-116 (162)
135 3p9y_A CG14216, LD40846P; phos 31.5 1.4E+02 0.0049 22.1 6.2 36 8-45 9-44 (198)
136 3hcw_A Maltose operon transcri 31.5 45 0.0015 25.6 3.9 38 7-44 6-51 (295)
137 3jx9_A Putative phosphoheptose 31.1 78 0.0027 22.9 4.8 39 82-125 74-112 (170)
138 2xgg_A Microneme protein 2; A/ 31.0 82 0.0028 22.2 5.0 38 8-45 122-161 (178)
139 3ff4_A Uncharacterized protein 30.7 1.2E+02 0.0042 20.3 8.5 81 8-119 4-84 (122)
140 3qk7_A Transcriptional regulat 30.4 60 0.002 24.9 4.5 37 8-44 6-49 (294)
141 3eeq_A Putative cobalamin bios 30.3 48 0.0016 27.0 3.9 74 105-200 43-122 (336)
142 2iuy_A Avigt4, glycosyltransfe 30.2 54 0.0018 25.7 4.2 39 8-46 3-58 (342)
143 3soz_A ORF 245 protein, cytopl 30.0 43 0.0015 25.9 3.4 76 23-125 34-119 (248)
144 4hv4_A UDP-N-acetylmuramate--L 30.0 1.6E+02 0.0056 24.9 7.5 32 8-42 22-53 (494)
145 2fvy_A D-galactose-binding per 29.9 32 0.0011 26.5 2.8 37 8-44 2-42 (309)
146 3tx1_A UDP-N-acetylenolpyruvoy 29.7 74 0.0025 25.6 4.9 81 85-191 54-134 (322)
147 3kke_A LACI family transcripti 29.7 82 0.0028 24.2 5.2 38 8-45 15-55 (303)
148 3gt7_A Sensor protein; structu 29.3 53 0.0018 22.3 3.6 32 8-42 7-38 (154)
149 3dmn_A Putative DNA helicase; 29.2 1.1E+02 0.0039 21.7 5.5 63 9-95 62-124 (174)
150 1tk9_A Phosphoheptose isomeras 29.0 94 0.0032 22.1 5.1 38 84-126 109-146 (188)
151 1di0_A Lumazine synthase; tran 29.0 60 0.0021 23.3 3.8 91 8-122 10-111 (158)
152 3brs_A Periplasmic binding pro 28.9 16 0.00054 28.1 0.7 36 8-43 5-45 (289)
153 1sqs_A Conserved hypothetical 28.7 61 0.0021 24.4 4.1 41 84-126 78-125 (242)
154 2dri_A D-ribose-binding protei 28.5 46 0.0016 25.2 3.4 35 9-43 2-39 (271)
155 2xbl_A Phosphoheptose isomeras 28.0 1E+02 0.0034 22.1 5.1 37 85-126 116-152 (198)
156 1x92_A APC5045, phosphoheptose 28.0 1E+02 0.0034 22.2 5.1 38 84-126 112-149 (199)
157 1p3y_1 MRSD protein; flavoprot 27.8 65 0.0022 23.9 4.0 37 8-44 8-44 (194)
158 3kto_A Response regulator rece 27.7 99 0.0034 20.2 4.8 31 9-42 7-37 (136)
159 3cs3_A Sugar-binding transcrip 27.6 1.9E+02 0.0066 21.6 9.2 38 8-45 8-48 (277)
160 1e5d_A Rubredoxin\:oxygen oxid 27.5 2.3E+02 0.0078 22.8 7.8 41 84-126 302-345 (402)
161 3kbq_A Protein TA0487; structu 27.2 48 0.0016 24.1 3.1 34 9-42 4-43 (172)
162 3lua_A Response regulator rece 27.0 1.3E+02 0.0046 19.5 5.5 32 9-43 5-37 (140)
163 2i2x_B MTAC, methyltransferase 27.0 61 0.0021 25.0 3.9 37 8-44 123-160 (258)
164 1ccw_A Protein (glutamate muta 26.7 53 0.0018 22.6 3.1 36 9-44 4-40 (137)
165 3rot_A ABC sugar transporter, 26.7 34 0.0012 26.4 2.4 37 8-44 3-42 (297)
166 3o74_A Fructose transport syst 26.6 19 0.00065 27.2 0.9 38 8-45 2-42 (272)
167 2yva_A DNAA initiator-associat 26.6 1.1E+02 0.0038 21.9 5.1 38 84-126 108-145 (196)
168 3sho_A Transcriptional regulat 26.5 1.7E+02 0.0058 20.6 6.3 36 85-125 87-122 (187)
169 2v4n_A Multifunctional protein 26.4 1.3E+02 0.0044 23.3 5.6 37 9-46 2-38 (254)
170 3qbe_A 3-dehydroquinate syntha 25.4 1.9E+02 0.0064 23.7 6.7 96 9-128 44-140 (368)
171 2pd2_A Hypothetical protein ST 25.3 1E+02 0.0034 19.8 4.3 57 85-142 29-88 (108)
172 2rjo_A Twin-arginine transloca 25.2 29 0.00099 27.3 1.7 37 8-44 5-44 (332)
173 1vim_A Hypothetical protein AF 25.2 1.1E+02 0.0038 22.2 4.9 38 84-126 88-125 (200)
174 1m3s_A Hypothetical protein YC 24.9 1.3E+02 0.0044 21.3 5.2 38 84-126 78-115 (186)
175 3lqk_A Dipicolinate synthase s 24.9 1.3E+02 0.0045 22.3 5.2 39 7-45 6-45 (201)
176 3trj_A Phosphoheptose isomeras 24.7 1.2E+02 0.0042 22.1 5.1 38 84-126 113-150 (201)
177 3brq_A HTH-type transcriptiona 24.6 90 0.0031 23.6 4.5 37 8-44 19-60 (296)
178 3qjg_A Epidermin biosynthesis 24.2 1E+02 0.0036 22.3 4.4 38 8-45 5-42 (175)
179 1j9j_A Stationary phase surviV 24.1 2.3E+02 0.0078 21.8 6.6 36 10-46 2-37 (247)
180 2i2w_A Phosphoheptose isomeras 24.1 1.1E+02 0.0039 22.4 4.8 37 85-126 131-167 (212)
181 4em8_A Ribose 5-phosphate isom 23.7 31 0.0011 24.5 1.4 69 116-198 66-134 (148)
182 3cvj_A Putative phosphoheptose 23.7 1.1E+02 0.0038 22.9 4.8 39 84-127 107-145 (243)
183 2e6c_A 5'-nucleotidase SURE; S 23.5 2.4E+02 0.0081 21.7 6.6 36 10-46 2-37 (244)
184 1e2b_A Enzyme IIB-cellobiose; 23.3 1.6E+02 0.0053 19.2 4.9 36 8-43 3-39 (106)
185 3nq4_A 6,7-dimethyl-8-ribityll 23.2 52 0.0018 23.6 2.5 90 8-121 12-113 (156)
186 3kjx_A Transcriptional regulat 23.1 99 0.0034 24.3 4.6 37 8-44 68-107 (344)
187 1wui_S Periplasmic [NIFE] hydr 23.0 72 0.0025 25.0 3.5 44 83-127 67-115 (267)
188 3huu_A Transcription regulator 22.8 55 0.0019 25.2 2.9 37 8-44 22-66 (305)
189 2xhz_A KDSD, YRBH, arabinose 5 22.7 1.3E+02 0.0046 21.1 4.9 38 84-126 95-132 (183)
190 3edo_A Flavoprotein, putative 22.6 54 0.0018 22.8 2.6 42 83-126 74-116 (151)
191 2fz5_A Flavodoxin; alpha/beta 22.6 1.3E+02 0.0045 19.8 4.6 40 84-125 45-88 (137)
192 1h2a_S Hydrogenase; SO ligand, 22.6 72 0.0025 25.7 3.5 44 83-127 117-165 (317)
193 3mcu_A Dipicolinate synthase, 22.4 1.5E+02 0.0051 22.2 5.1 38 8-45 5-43 (207)
194 3h5o_A Transcriptional regulat 22.3 1.5E+02 0.0051 23.2 5.5 38 8-45 62-102 (339)
195 2o8n_A APOA-I binding protein; 22.1 87 0.003 24.4 3.9 115 9-134 80-199 (265)
196 2ioy_A Periplasmic sugar-bindi 22.1 41 0.0014 25.7 2.0 36 9-44 2-40 (283)
197 2rgy_A Transcriptional regulat 22.0 94 0.0032 23.6 4.2 37 8-44 8-47 (290)
198 3ezx_A MMCP 1, monomethylamine 22.0 57 0.0019 24.5 2.7 37 9-45 93-130 (215)
199 4hqf_A Thrombospondin-related 21.9 1.3E+02 0.0043 23.2 4.9 38 8-45 128-167 (281)
200 1tlt_A Putative oxidoreductase 21.8 1.4E+02 0.0047 23.4 5.1 31 84-122 64-94 (319)
201 3ksm_A ABC-type sugar transpor 21.6 42 0.0014 25.2 2.0 34 10-43 2-38 (276)
202 1l5x_A SurviVal protein E; str 21.6 1.7E+02 0.0058 23.0 5.5 36 10-46 2-37 (280)
203 3d02_A Putative LACI-type tran 21.5 66 0.0023 24.6 3.1 35 8-42 4-41 (303)
204 2c92_A 6,7-dimethyl-8-ribityll 21.5 55 0.0019 23.6 2.4 89 8-122 17-114 (160)
205 3k9c_A Transcriptional regulat 21.2 96 0.0033 23.6 4.0 37 8-45 12-51 (289)
206 2x7x_A Sensor protein; transfe 21.1 56 0.0019 25.5 2.7 36 8-44 6-45 (325)
207 3egc_A Putative ribose operon 21.0 62 0.0021 24.6 2.9 38 8-45 8-48 (291)
208 3c24_A Putative oxidoreductase 20.9 1.7E+02 0.0059 22.4 5.5 33 9-44 12-44 (286)
209 2hna_A Protein MIOC, flavodoxi 20.8 2E+02 0.0069 19.4 8.8 72 84-162 45-120 (147)
210 3c3k_A Alanine racemase; struc 20.7 1.1E+02 0.0037 23.2 4.2 37 8-44 8-47 (285)
211 3rss_A Putative uncharacterize 20.7 91 0.0031 26.8 4.0 118 8-136 52-171 (502)
212 1b93_A Protein (methylglyoxal 20.7 1E+02 0.0035 21.9 3.7 112 8-138 11-134 (152)
213 8abp_A L-arabinose-binding pro 20.6 43 0.0015 25.7 1.9 85 8-124 2-89 (306)
214 4eg0_A D-alanine--D-alanine li 20.5 1.6E+02 0.0054 23.0 5.3 37 8-44 13-54 (317)
215 2fep_A Catabolite control prot 20.5 84 0.0029 24.0 3.5 37 8-44 16-55 (289)
216 1jeo_A MJ1247, hypothetical pr 20.4 1.3E+02 0.0044 21.2 4.3 38 84-126 81-118 (180)
217 3u3x_A Oxidoreductase; structu 20.3 2.3E+02 0.0077 22.7 6.3 32 8-42 26-57 (361)
218 4fe7_A Xylose operon regulator 20.2 1.4E+02 0.0048 24.3 5.0 35 8-43 25-62 (412)
219 3ph3_A Ribose-5-phosphate isom 20.2 2.5E+02 0.0085 20.3 5.7 82 103-198 62-148 (169)
220 2obx_A DMRL synthase 1, 6,7-di 20.1 94 0.0032 22.2 3.4 91 8-122 11-112 (157)
No 1
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=100.00 E-value=3e-43 Score=268.81 Aligned_cols=173 Identities=19% Similarity=0.243 Sum_probs=159.9
Q ss_pred CCCCCCCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCC
Q 027785 3 NSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID 82 (219)
Q Consensus 3 ~~~~~~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 82 (219)
+|.+.+++|+|++.+||++.|+..|+++|+++|++++++|++++ ++.++.|.++.+|..+++++
T Consensus 3 ~m~~t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~----------------~v~~~~G~~v~~d~~l~~v~ 66 (177)
T 4hcj_A 3 AMGKTNNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIG----------------TAQGKLGGMTNIDLLFSEVD 66 (177)
T ss_dssp --CCCCEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSE----------------EEEETTSCEEEECEEGGGCC
T ss_pred ccccCCCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCC----------------eEeeCCCCEEecCccHHHCC
Confidence 34433566788889999999999999999999999999999876 68889999999999999999
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCC
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPE 162 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~ 162 (219)
+.+||+|+||||.++..++.++.+++||+++++++|+|++||+|+++|+++|||+||++|+||..++.+++.|+.|++.+
T Consensus 67 ~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~ 146 (177)
T 4hcj_A 67 AVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAGIGSGVVIMANAKILEEINVTCLSADESHVRHGNANIMSEN 146 (177)
T ss_dssp GGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSS
T ss_pred HhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEEEecccHHHHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCC
Confidence 89999999999999888889999999999999999999999999999999999999999999999999999999998776
Q ss_pred CcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcc
Q 027785 163 TMAACVVDGNIITGATYEGHPEFIRLFLKALGG 195 (219)
Q Consensus 163 ~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~ 195 (219)
+|+|||+|||+|+.++.+|++++|+.|.+
T Consensus 147 ----vV~Dg~liTs~g~~~~~~~a~~lve~L~s 175 (177)
T 4hcj_A 147 ----VVVSGNIVTANGPTSSKDFANAVVGVLNS 175 (177)
T ss_dssp ----EEEETTEEEECSGGGHHHHHHHHHHHHHT
T ss_pred ----EEEECCEEECCCHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999865
No 2
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=100.00 E-value=6.2e-42 Score=268.78 Aligned_cols=188 Identities=14% Similarity=0.145 Sum_probs=158.4
Q ss_pred CCCCCCCCCEEEEEecCCCCchhhHHHHHHHHhCC-------CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccc
Q 027785 1 MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFA 73 (219)
Q Consensus 1 ~~~~~~~~~kv~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 73 (219)
|+.|++.++||+|+++|||++.|+..+.++|+.+| |++.++|.+++ ++.++.|+.+.
T Consensus 1 m~~~~~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~----------------~v~~~~G~~v~ 64 (209)
T 3er6_A 1 MSLTNKKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNR----------------PLIGRGGISVQ 64 (209)
T ss_dssp ------CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSS----------------CEEETTTEEEE
T ss_pred CCCCCCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC----------------ceecCCCeEEe
Confidence 66777778999999999999999999999999875 89999999876 68889999999
Q ss_pred cccCccCCCCCCccEEEEcCCCCccc--ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHH
Q 027785 74 LNATFDEIDPTKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVL 151 (219)
Q Consensus 74 ~~~~~~~~~~~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l 151 (219)
+|..++++ .+||+||||||.++.. +..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|
T Consensus 65 ~d~~~~~~--~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l 142 (209)
T 3er6_A 65 PTAQWQSF--DFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKAGLLQQNKAVMHSYFAHLF 142 (209)
T ss_dssp CSSCGGGC--SCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHTCCSSCEECCCHHHHHHH
T ss_pred CCcCcccc--CCCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHcCCCCCCeeEECHHHHHHH
Confidence 99999986 4899999999987643 3678999999999999999999999999999999999999999999999999
Q ss_pred HH-CCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEec
Q 027785 152 IA-AGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLC 208 (219)
Q Consensus 152 ~~-~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~ 208 (219)
++ +|...+..+. .+|+|||+|||+|+.+++||++++|+++.|+..++ ++.+++..
T Consensus 143 ~~~~p~~~~~~~~--~~v~Dg~iiTs~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~ 200 (209)
T 3er6_A 143 GELFPEIMLMTEQ--KALIDGNVYLSSGPYSHSSVMLEIVEEYFGKHTRNLGNQFLSTIE 200 (209)
T ss_dssp HHHCTTSEECTTC--SEEEETTEEEECCSSCCHHHHHHHHHHHHCHHHHHHHHHHTTC--
T ss_pred HHHCCCcEEecCC--EEEEeCCEEECCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCc
Confidence 86 6655443321 39999999999999999999999999988885544 55555544
No 3
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=100.00 E-value=2.4e-41 Score=272.02 Aligned_cols=182 Identities=22% Similarity=0.233 Sum_probs=163.1
Q ss_pred CCEEEEEecCCCCchhhHHHHHHH-HhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQAL-LAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l-~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
++||+|+++|||+..|+..++++| +.+++++.++|++++ ++.++.|+.+.+|..+++++ .+|
T Consensus 23 ~~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~----------------~V~~~~G~~i~~d~~l~~~~-~~y 85 (253)
T 3ewn_A 23 DEQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLD----------------PVTSDAGLAIVPTATFGTCP-RDL 85 (253)
T ss_dssp CCEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSS----------------CEECTTSCEECCSEETTTSC-SSC
T ss_pred CeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCC----------------eEEcCCCCEEeCCcCHHHcC-CCC
Confidence 479999999999999999999999 578999999999876 57888899999999999876 479
Q ss_pred cEEEEcCCC-CcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcc
Q 027785 87 DGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA 165 (219)
Q Consensus 87 D~liipGG~-~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~ 165 (219)
|+||||||. ++..+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|+++|.++++..
T Consensus 86 D~liVPGG~~g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~~--- 162 (253)
T 3ewn_A 86 TVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAAGLLKGYKATSHWSCRDALAGFGAIPTEAR--- 162 (253)
T ss_dssp SEEEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCSS---
T ss_pred CEEEECCCccchhhhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCCc---
Confidence 999999998 7766778999999999999999999999999999999999999999999999999988898887543
Q ss_pred eEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEecCC
Q 027785 166 ACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLCGV 210 (219)
Q Consensus 166 ~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~~~ 210 (219)
+|+|||+|||+|+++++||+++||+++.|+..++ ++.++|-.+.
T Consensus 163 -vV~Dg~iiTs~G~~a~idlaL~lv~~l~G~~~A~~va~~l~~~~~~ 208 (253)
T 3ewn_A 163 -VVRDRNRITGAGVTAGLDFGLSMVAELRDQTYAECAQLMSEYDPDP 208 (253)
T ss_dssp -EEEETTEEEECSTTHHHHHHHHHHHHHSCHHHHHHHHHHTTCCCCC
T ss_pred -EEEECCEEECCCHHHHHHHHHHHHHHHcCHHHHHHHHHhcccCCCC
Confidence 8999999999999999999999999999986544 6655554443
No 4
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=100.00 E-value=7.1e-41 Score=254.27 Aligned_cols=166 Identities=36% Similarity=0.620 Sum_probs=154.4
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
++||+|+++|||+..|+..++++|+.+|++++++|++++ ++.++.|..+.++..++++++.+||
T Consensus 2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~----------------~v~~~~g~~i~~~~~~~~~~~~~~D 65 (168)
T 3l18_A 2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG----------------KITGKHGYSVNVDLTFEEVDPDEFD 65 (168)
T ss_dssp CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE----------------EEECTTSCEEEECEEGGGCCGGGCS
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCC----------------EEecCCCcEEeccCChhHCCHhhCC
Confidence 579999999999999999999999999999999999876 6888899999999999998777899
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceE
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC 167 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~ 167 (219)
+|+||||.++..+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++.+..+++.. +
T Consensus 66 ~livpGG~~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~----~ 141 (168)
T 3l18_A 66 ALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGPQILISAKVLKGRRGTSTITIRDDVINAGAEWIDAE----V 141 (168)
T ss_dssp EEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSS----C
T ss_pred EEEECCCcCHHHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHCCccCCCEEEeCccHHHHHHhCCCEEecCC----E
Confidence 999999987766678999999999999999999999999999999999999999999999999999877776543 8
Q ss_pred EEcCCeEeCCCCCCHHHHHHHHHHHH
Q 027785 168 VVDGNIITGATYEGHPEFIRLFLKAL 193 (219)
Q Consensus 168 v~dg~liT~~g~~s~~~~~l~li~~l 193 (219)
|+|||+|||+|+.++.+|++++|++|
T Consensus 142 v~dg~iiT~~g~~~~~d~~l~li~~l 167 (168)
T 3l18_A 142 VVDGNWVSSRHPGDLYAWMREFVKLL 167 (168)
T ss_dssp EEETTEEEECSGGGHHHHHHHHGGGC
T ss_pred EEeCCEEEcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999875
No 5
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=100.00 E-value=4e-41 Score=264.77 Aligned_cols=190 Identities=18% Similarity=0.190 Sum_probs=166.5
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHH--------hCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALL--------AFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFD 79 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~--------~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~ 79 (219)
++||+|+++|||++.|+..+.++|+ +++++++++|++++ ++.++.|..+.+|..++
T Consensus 5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~----------------~v~~~~G~~i~~d~~~~ 68 (212)
T 3efe_A 5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKE----------------MITTMGGLRIKPDISLD 68 (212)
T ss_dssp CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSC----------------CEECTTCCEECCSEEGG
T ss_pred ccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCC----------------eEEcCCCCEEecCcCHH
Confidence 4799999999999999999999999 67899999999876 57888999999999999
Q ss_pred CCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCC-CCHHHHHH-CCC-
Q 027785 80 EIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYP-PVKPVLIA-AGA- 156 (219)
Q Consensus 80 ~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~-~~~~~l~~-~g~- 156 (219)
++++.+||+|+||||.+.. ...++.+++||+++++++++|++||+|+++|+++|||+||++|+|| ...+.+++ ++.
T Consensus 69 ~~~~~~~D~livpGG~~~~-~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~~ 147 (212)
T 3efe_A 69 ECTLESKDLLILPGGTTWS-EEIHQPILERIGQALKIGTIVAAICGATDALANMGYLDTRKHTSNNLEYTKMVCPNYKGE 147 (212)
T ss_dssp GCCCCTTCEEEECCCSCTT-SGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHTTTTSSSCBCCSCHHHHHHHCTTCCCT
T ss_pred HCCccCCCEEEECCCCccc-cccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHcCCCCCCeeecCCHHHHHHHHhhCCCc
Confidence 9887899999999998754 4678999999999999999999999999999999999999999997 77777765 553
Q ss_pred -eEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEecCCchhhccccC
Q 027785 157 -SWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLCGVSFCFQNLLE 219 (219)
Q Consensus 157 -~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~ 219 (219)
.+.+. .+|+|||+|||+|+. ++||++++|+++.++.+.+ ++..++..+++..|++||+
T Consensus 148 ~~~~~~----~~V~Dg~iiTs~G~~-~~d~al~li~~l~g~~a~~va~~~~~~~~g~~~~~~~~~~ 208 (212)
T 3efe_A 148 KFYELG----PAVSDANLVTASGIA-PLEFAMEVLKKIDVFTLDALHSWYNLNKTHKPEYFFQLMN 208 (212)
T ss_dssp TTBCCC----SEEEETTEEEECTTC-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHCCTHHHHHHHT
T ss_pred cccCCC----cEEEECCEEECCCch-HHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 34443 399999999999985 9999999999999985555 5556666699999999985
No 6
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=100.00 E-value=2.8e-41 Score=263.72 Aligned_cols=179 Identities=15% Similarity=0.202 Sum_probs=156.8
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCC------CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFG------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI 81 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~ 81 (219)
++||+|+++|||++.|+..++++|+.+| |++.++|++++ ++.++.|+++.+| +++++
T Consensus 5 ~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~----------------~v~~~~G~~i~~d-~l~~~ 67 (202)
T 3gra_A 5 PYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGD----------------RVLSDLGLELVAT-ELSAA 67 (202)
T ss_dssp CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSS----------------EEEBTTSCEEECE-ECCSG
T ss_pred cEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC----------------ceEcCCCCEEECC-Ccccc
Confidence 6899999999999999999999999986 99999999876 6888999999999 99987
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH-CCCeEec
Q 027785 82 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIE 160 (219)
Q Consensus 82 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~-~g~~~~~ 160 (219)
+..+||+||||||.++... . +.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++ +|...+.
T Consensus 68 ~~~~~D~livpGG~~~~~~-~-~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~ 145 (202)
T 3gra_A 68 ALKELDLLVVCGGLRTPLK-Y-PELDRLLNDCAAHGMALGGLWNGAWFLGRAGVLDDYGCSIHPEQRASLSERSPQTRIT 145 (202)
T ss_dssp GGTTCSEEEEECCTTCCSC-C-TTHHHHHHHHHHHTCEEEEETTHHHHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEEC
T ss_pred cCCCCCEEEEeCCCchhhc-c-HHHHHHHHHHHhhCCEEEEECHHHHHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEec
Confidence 6679999999999876543 4 89999999999999999999999999999999999999999999999987 6765554
Q ss_pred CCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEec
Q 027785 161 PETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLC 208 (219)
Q Consensus 161 ~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~ 208 (219)
++. +|+|||+|||+|+++++||++++|+++.|+..++ ++.++|-.
T Consensus 146 ~~~---~v~dg~iiTs~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~ 192 (202)
T 3gra_A 146 PAS---FTLDRDRLSAASPNGAMELMLGLVRRLYGDGLAEGVEEILSFSG 192 (202)
T ss_dssp SSS---EEEETTEEEESSHHHHHHHHHHHHHHHHCHHHHHHHHHHHC---
T ss_pred CCe---EEEeCCEEECCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCc
Confidence 443 9999999999999999999999999988885544 55555543
No 7
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=100.00 E-value=7.4e-41 Score=266.26 Aligned_cols=182 Identities=19% Similarity=0.268 Sum_probs=163.4
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHh-CCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
++||+|+++|||+..|+..++++|+. ++++++++|++++ ++.++.|+.+.+|.++++++ +|
T Consensus 5 ~~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~----------------~V~~~~G~~v~~d~~l~~~~--~~ 66 (231)
T 3noq_A 5 AVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPG----------------PVVASSGLVLQATTSFADCP--PL 66 (231)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSE----------------EEECTTSCEEEECEETTTCC--CC
T ss_pred cEEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCC----------------cEEcCCCCEEecccChhHCC--cC
Confidence 47999999999999999999999999 7999999999876 68888999999999999864 79
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcce
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA 166 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~ 166 (219)
|+||||||.++..+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.++++|.++++..
T Consensus 67 D~livpGG~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~~---- 142 (231)
T 3noq_A 67 DVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHER---- 142 (231)
T ss_dssp SEEEECCSTTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCSS----
T ss_pred CEEEECCCCChhhhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCCc----
Confidence 9999999988766778999999999999999999999999999999999999999999999999988898886543
Q ss_pred EEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEecCCc
Q 027785 167 CVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLCGVS 211 (219)
Q Consensus 167 ~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~~~~ 211 (219)
+|+|||+|||+|+++++||++++|+++.|+...+ ++.++|-.+.+
T Consensus 143 vV~Dg~iiTs~G~~a~~d~aL~li~~~~G~~~A~~va~~l~~~~~~p 189 (231)
T 3noq_A 143 VVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRVQLQLEYAPAPP 189 (231)
T ss_dssp EEEETTEEEECSTTHHHHHHHHHHHHHSCHHHHHHHHHHTTCCCCCS
T ss_pred EEEeCCEEECCCHHHHHHHHHHHHHHHcCHHHHHHHHHhceeCCCCC
Confidence 8999999999999999999999999999986544 66666654433
No 8
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-40 Score=257.77 Aligned_cols=173 Identities=26% Similarity=0.408 Sum_probs=155.1
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCC-CCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGK-KSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
+|||+|+++|||++.|+..++++|+++|++++++|+++ + ++.++.|..+.+|..++++++.+|
T Consensus 5 ~kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~----------------~v~~~~g~~i~~d~~l~~~~~~~~ 68 (190)
T 4e08_A 5 SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGE----------------AVKCSRDVQILPDTSLAQVASDKF 68 (190)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSS----------------CEECTTSCEEECSEETGGGTTCCC
T ss_pred CcEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCc----------------ceecCCCcEEECCCCHHHCCcccC
Confidence 47999999999999999999999999999999999987 4 577889999999999999877789
Q ss_pred cEEEEcCCC-CcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcc
Q 027785 87 DGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA 165 (219)
Q Consensus 87 D~liipGG~-~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~ 165 (219)
|+|+||||. +...+..++.+.+||+++++++++|+++|+|+++|+++|||+||++|+||...+.+++ +..+++..
T Consensus 69 D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~-~~~~~~~~--- 144 (190)
T 4e08_A 69 DVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYPSMKPQLVN-NYSYVDDK--- 144 (190)
T ss_dssp SEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGGGGSSS-SSEECSSC---
T ss_pred CEEEECCCChHHHHhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCeEEeCcCHHHHHhc-CCcccCCC---
Confidence 999999995 4545677899999999999999999999999999999999999999999999887766 34566433
Q ss_pred eEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc
Q 027785 166 ACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS 200 (219)
Q Consensus 166 ~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~ 200 (219)
.+|+|||+|||+|+.+++||++++|+++.|+..++
T Consensus 145 ~~v~dg~iiTs~g~~a~~d~al~li~~~~g~~~a~ 179 (190)
T 4e08_A 145 TVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQ 179 (190)
T ss_dssp SEEEETTEEEECSGGGHHHHHHHHHHHHHCHHHHH
T ss_pred cEEEECCEEECCChHHHHHHHHHHHHHhcCHHHHH
Confidence 39999999999999999999999999998885543
No 9
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=100.00 E-value=1.1e-39 Score=252.40 Aligned_cols=173 Identities=27% Similarity=0.544 Sum_probs=155.1
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceecc-----ccCCccccccCccCCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSE-----TRGHNFALNATFDEID 82 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~i~~~~~~~~~~ 82 (219)
++||+|++++||+..|+..++++|+.+|+++++++++++ ++.+ +.|..+.++..+++++
T Consensus 9 ~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~----------------~v~~~~~~~~~g~~v~~~~~~~~~~ 72 (190)
T 2vrn_A 9 GKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG----------------EIQSMKGDIEPQEKYRVDHVVSEVQ 72 (190)
T ss_dssp TCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSS----------------EEEEEETTTEEEEEEECSEEGGGCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCC----------------ccccccccccCCcEEeCCCChhhCC
Confidence 689999999999999999999999999999999999876 3444 6688899999999887
Q ss_pred CCCccEEEEcCCC-CcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecC
Q 027785 83 PTKYDGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEP 161 (219)
Q Consensus 83 ~~~~D~liipGG~-~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~ 161 (219)
+.+||+||||||. ++..+..++.+++||+++++++++|+++|+|+++|+++|||+||++|+||...+.|++.+.++++.
T Consensus 73 ~~~~D~livpGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~~ 152 (190)
T 2vrn_A 73 VSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDE 152 (190)
T ss_dssp GGGCSEEEECCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCC
T ss_pred hhhCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhCcccCCcEEecCccHHHHHHHcCCeEECC
Confidence 7789999999997 555567789999999999999999999999999999999999999999999999999888888876
Q ss_pred CCcceEEEcCCeEeCCCCCCHHHHHHHHHHHH-ccccccc
Q 027785 162 ETMAACVVDGNIITGATYEGHPEFIRLFLKAL-GGTITGS 200 (219)
Q Consensus 162 ~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l-~~~~~~~ 200 (219)
. +++|||+|||+|+.++.+|++++|+++ +++..++
T Consensus 153 ~----~v~Dg~iiTs~g~~s~~~~~l~li~~l~~g~~~a~ 188 (190)
T 2vrn_A 153 E----CVTDKGVVTSRKPDDLPAFNKKIVEEFAEGDHSSR 188 (190)
T ss_dssp S----CEEETTEEECSSGGGHHHHHHHHHHHHHHCCCGGG
T ss_pred C----EEEcCCEEEcCChhhHHHHHHHHHHHHhccccccc
Confidence 5 466999999999999999999999988 7775543
No 10
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=100.00 E-value=4.2e-40 Score=258.70 Aligned_cols=179 Identities=16% Similarity=0.263 Sum_probs=159.0
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhC--CCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAF--GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 85 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~a--g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 85 (219)
++||+|+++|||++.|+..++++|+.+ ++++.++|++++ ++.++.|..+.+|..+++.+ +
T Consensus 4 ~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~----------------~V~~~~G~~v~~d~~~~~~~--~ 65 (211)
T 3mgk_A 4 SYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGG----------------LVESSQKVRVETSLYTRDEN--I 65 (211)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCE----------------EEECTTCCEEEEBCCCCCSS--S
T ss_pred ceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCC----------------eEecCCCcEEEeccchhhCC--C
Confidence 579999999999999999999999998 499999999876 68889999999999998764 6
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHC-CC-eEecCCC
Q 027785 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-GA-SWIEPET 163 (219)
Q Consensus 86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~-g~-~~~~~~~ 163 (219)
||+|+||||.++..+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++. +. .+....
T Consensus 66 ~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~- 144 (211)
T 3mgk_A 66 EKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEA- 144 (211)
T ss_dssp EEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSC-
T ss_pred CCEEEECCCcchhhhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCC-
Confidence 999999999877666788999999999999999999999999999999999999999999999999884 54 444444
Q ss_pred cceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEe
Q 027785 164 MAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFL 207 (219)
Q Consensus 164 ~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~ 207 (219)
.+|+|||+|||+|+.+++||++++|+++.|+..++ ++.++|.
T Consensus 145 --~~v~Dg~iiTs~G~~a~~dlal~lv~~~~G~~~A~~va~~l~~~ 188 (211)
T 3mgk_A 145 --RWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEISRSIEYF 188 (211)
T ss_dssp --SEEEETTEEEECSHHHHHHHHHHHHHHHHCHHHHHHHHHHHTCC
T ss_pred --eEEEeCCEEECCCHHHHHHHHHHHHHHHhCHHHHHHHHHhcEEC
Confidence 39999999999999999999999999988885544 6666654
No 11
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=100.00 E-value=2.1e-40 Score=259.99 Aligned_cols=189 Identities=19% Similarity=0.300 Sum_probs=161.5
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCC-CCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGK-KSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
++||+|+++|||+..|+..++++|+.+|++++++|+++ + ++.++.|..+.++..++++++.+|
T Consensus 9 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~----------------~v~~~~G~~v~~d~~l~~~~~~~~ 72 (208)
T 3ot1_A 9 SKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKL----------------QVQGSRGVWLTAEQTLEACSAEAF 72 (208)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCS----------------EEECTTSCEEECSEEGGGCCGGGC
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCc----------------ceecCCCcEEeCCCCHHHCCCcCC
Confidence 57999999999999999999999999999999999985 3 688889999999999999877899
Q ss_pred cEEEEcCCC-CcccccCChHHHHHHHHHHhcCCeEEEEehhH-HHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCc
Q 027785 87 DGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETM 164 (219)
Q Consensus 87 D~liipGG~-~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~-~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~ 164 (219)
|+||||||. ++..+..++.+++||+++++++|+|++||+|+ ++|+++|||+||++|+||...+.+. +..+.+..
T Consensus 73 D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~aGlL~g~~~T~~~~~~~~l~--~~~~~~~~-- 148 (208)
T 3ot1_A 73 DALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIP--SERLSRQR-- 148 (208)
T ss_dssp SEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTTTCSTTCCBCCCGGGGGGSC--TTTBCCSS--
T ss_pred CEEEECCCchHHHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHCCccCCCEEEECccHHHHcc--CCccccCc--
Confidence 999999997 45556789999999999999999999999999 9999999999999999999887652 23444443
Q ss_pred ceEEE--cCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEecCCchhhcccc
Q 027785 165 AACVV--DGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLCGVSFCFQNLL 218 (219)
Q Consensus 165 ~~~v~--dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 218 (219)
+++ |||+|||+|+.+++||++++|+++.|+..++ ++.++|-.+....|..++
T Consensus 149 --vv~d~dg~iiTs~g~~a~~d~al~lv~~l~G~~~a~~va~~l~~~~~~~~q~~~~l 204 (208)
T 3ot1_A 149 --VCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAAPMVLHPQQLTELSGFI 204 (208)
T ss_dssp --EEEEGGGTEEEECSGGGHHHHHHHHHHHHHCHHHHHHHHGGGTCCHHHHHHHHTTT
T ss_pred --EEEeCCCCEEECCCHHHHHHHHHHHHHHhcCHHHHHHHHHhheeCCCCCCccchhh
Confidence 565 5699999999999999999999998885544 666666444555565554
No 12
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=100.00 E-value=9.3e-40 Score=253.55 Aligned_cols=180 Identities=22% Similarity=0.328 Sum_probs=156.5
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCC-----
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP----- 83 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~----- 83 (219)
+||+|+++|||++.|+..|+++|+++|+++++++....+.. .+.++.|.++.+|..+++++.
T Consensus 5 ~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~-------------~v~~~~g~~v~~d~~~~~~~~~d~~~ 71 (194)
T 4gdh_A 5 VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDR-------------LVKMSRDVEMYANRSYKEIPSADDFA 71 (194)
T ss_dssp CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTC-------------EEECTTSCEEECSEEGGGSCCHHHHH
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCc-------------eEecCCCceeeccccHhhCCcccccc
Confidence 59999999999999999999999999999999887643211 677888999999999988753
Q ss_pred CCccEEEEcCCC-CcccccCChHHHHHHHHHHhc-CCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecC
Q 027785 84 TKYDGLVIPGGR-APEYLAMNDSVIDLVRKFSNS-GKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEP 161 (219)
Q Consensus 84 ~~~D~liipGG~-~~~~~~~~~~l~~~l~~~~~~-~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~ 161 (219)
.+||+|+||||. ++..++.++.+++||++++++ +|+++++|+|+ +|+.+|+|+||++|+||..++.+++.++.|++.
T Consensus 72 ~~yD~lvvPGG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~-~l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d~ 150 (194)
T 4gdh_A 72 KQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT-LTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQ 150 (194)
T ss_dssp HHCSEEEECCCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGG-HHHHHTTCCCSEECCCGGGHHHHHHTTCEECCS
T ss_pred ccCCEEEECCCchhHhHhhhCHHHHHHHHHhhhcCCceEEeecccc-cchhhceecCCceEecCcHHHHHHhcCCeeecc
Confidence 359999999996 466678899999999999875 79999999998 567788899999999999999999999999876
Q ss_pred CCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEE
Q 027785 162 ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILF 206 (219)
Q Consensus 162 ~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~ 206 (219)
. +|+|||+|||+|+.++++|+++||+++.|+..++ ++.++|
T Consensus 151 ~----vV~Dg~iiTs~g~~~~~d~al~lve~l~G~~~a~~va~~l~~ 193 (194)
T 4gdh_A 151 P----VVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSM 193 (194)
T ss_dssp S----EEEETTEEEECSGGGHHHHHHHHHHHHSCHHHHHHHHHHTTC
T ss_pred e----EEEcCCEEECCCHhHHHHHHHHHHHHHcCHHHHHHHHhhccC
Confidence 5 8999999999999999999999999999986544 554443
No 13
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=100.00 E-value=1.4e-39 Score=253.22 Aligned_cols=174 Identities=24% Similarity=0.355 Sum_probs=154.4
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCC-CCCCc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI-DPTKY 86 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~-~~~~~ 86 (219)
++||+|+++|||+..|+..++++|+.+|++++++|++++. ++.++.|..+.++..++++ ++.+|
T Consensus 3 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~---------------~v~~~~g~~v~~d~~l~~~~~~~~~ 67 (197)
T 2rk3_A 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKD---------------PVQCSRDVVICPDASLEDAKKEGPY 67 (197)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSS---------------CEECTTSCEECCSEEHHHHHTTCCC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCC---------------ccccCCCCEEeCCcCHHHcCCccCC
Confidence 4699999999999999999999999999999999998642 5778889999999999887 66799
Q ss_pred cEEEEcCCCC-cccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHC-CCeEecCCCc
Q 027785 87 DGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-GASWIEPETM 164 (219)
Q Consensus 87 D~liipGG~~-~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~-g~~~~~~~~~ 164 (219)
|+|+||||.+ +..+..++.+.+||+++++++|+|++||+|+++|+++|+|+||++|+||...+.+++. +..+.+.
T Consensus 68 D~livpGG~~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~--- 144 (197)
T 2rk3_A 68 DVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSEN--- 144 (197)
T ss_dssp SEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCC---
T ss_pred CEEEECCCchhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCC---
Confidence 9999999974 4456778999999999999999999999999999999999999999999999999864 3344333
Q ss_pred ceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc
Q 027785 165 AACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS 200 (219)
Q Consensus 165 ~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~ 200 (219)
.+|+|||+|||+|+.+++||++++|+++.|+..++
T Consensus 145 -~~v~Dg~iiTs~g~~a~~d~al~li~~l~g~~~a~ 179 (197)
T 2rk3_A 145 -RVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAA 179 (197)
T ss_dssp -SEEEETTEEEECSGGGHHHHHHHHHHHHHCHHHHH
T ss_pred -CEEEeCCEEECCCHHHHHHHHHHHHHHhcCHHHHH
Confidence 39999999999999999999999999998885543
No 14
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=100.00 E-value=8.2e-39 Score=248.17 Aligned_cols=168 Identities=33% Similarity=0.586 Sum_probs=154.2
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCC-ccccccCccCCCCCCc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPTKY 86 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~ 86 (219)
++||+|+++|||+..|+..+.++|+.+|+++.++++++++ .+.++.|. .+.++..++++++.+|
T Consensus 23 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~---------------~v~~~~g~~~v~~~~~l~~~~~~~~ 87 (193)
T 1oi4_A 23 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGK---------------TVKGKKGEASVTIDKSIDEVTPAEF 87 (193)
T ss_dssp CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTC---------------EEECTTSSCEEECCEEGGGCCGGGC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCc---------------ceecCCCCeEEECCCChHHCCcccC
Confidence 5799999999999999999999999999999999998762 27778888 9999999998877789
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcce
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA 166 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~ 166 (219)
|+||||||.++..+..++.+.+||+++++++++|++||+|+++|+++|+|+||++|+||...+.|++.+..+++..
T Consensus 88 D~livpGG~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~---- 163 (193)
T 1oi4_A 88 DALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQE---- 163 (193)
T ss_dssp SEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSS----
T ss_pred CEEEECCCcCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCccCCCEEEeChhHHHHHHHcCCEEecCC----
Confidence 9999999977655667899999999999999999999999999999999999999999999999998888887765
Q ss_pred EEEcCC-eEeCCCCCCHHHHHHHHHHHHc
Q 027785 167 CVVDGN-IITGATYEGHPEFIRLFLKALG 194 (219)
Q Consensus 167 ~v~dg~-liT~~g~~s~~~~~l~li~~l~ 194 (219)
+|+||| +|||+|+.++.||++++|++|.
T Consensus 164 ~v~Dg~~iiTs~g~~~~~d~~l~li~~l~ 192 (193)
T 1oi4_A 164 VVVDKDQLVTSRTPDDLPAFNREALRLLG 192 (193)
T ss_dssp CEEETTTEEEESSGGGHHHHHHHHHHHHC
T ss_pred EEEECCEEEECCCcchHHHHHHHHHHHhh
Confidence 688999 9999999999999999999875
No 15
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=100.00 E-value=3.6e-38 Score=264.23 Aligned_cols=172 Identities=28% Similarity=0.493 Sum_probs=158.4
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCC-ccccccCccCCCCCCc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPTKY 86 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~ 86 (219)
++||+|+++|||+..|+..|+++|+.+|+++.++|+++++ .+.++.|. .+.+|..++++++.+|
T Consensus 10 mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~---------------~V~ss~G~~~i~~d~~l~~v~~~~~ 74 (365)
T 3fse_A 10 KKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNE---------------KYKGKRGRLSTQADGTTTEAIASEF 74 (365)
T ss_dssp -CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSSC---------------CEECTTSCCEECCSEETTTCCGGGC
T ss_pred ceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCCc---------------eeecCCCceEEeCCCCHhhCCCcCC
Confidence 5799999999999999999999999999999999998762 37888899 9999999999877789
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcce
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA 166 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~ 166 (219)
|+||||||.++..+..++.+.+||+++++++++|++||+|+++|+++|||+||++|+||...+.|++.++.+.+..
T Consensus 75 DaLiVPGG~g~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~~---- 150 (365)
T 3fse_A 75 DAVVIPGGMAPDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEGDLLRGKQATGFIAISKDMMNAGADYLDEA---- 150 (365)
T ss_dssp SEEEECCBTHHHHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSS----
T ss_pred CEEEEECCcchhhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecCc----
Confidence 9999999998766678999999999999999999999999999999999999999999999999998777886543
Q ss_pred EEEcCCeEeCCCCCCHHHHHHHHHHHHccccc
Q 027785 167 CVVDGNIITGATYEGHPEFIRLFLKALGGTIT 198 (219)
Q Consensus 167 ~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~ 198 (219)
+|+|||+|||+|+.++.+|++++|+++.+...
T Consensus 151 vV~DGniITs~G~~a~~d~al~lIe~L~g~~~ 182 (365)
T 3fse_A 151 LVVDGNLITSREPGDLAIFTTAILSRLGYGGK 182 (365)
T ss_dssp CEEETTEEEECSGGGHHHHHHHHHHHTTCCCS
T ss_pred EEEECCEEECCCHHHHHHHHHHHHHHhcCchH
Confidence 88999999999999999999999999999854
No 16
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-37 Score=265.92 Aligned_cols=201 Identities=75% Similarity=1.285 Sum_probs=173.7
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
+|||+|+++|||++.|+..++++|+++|++++++|++++|.++...+.++..+...+.++.|..+.++.+++++++.+||
T Consensus 12 ~~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 91 (396)
T 3uk7_A 12 SRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYD 91 (396)
T ss_dssp CCEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCS
T ss_pred CCeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCC
Confidence 57999999999999999999999999999999999987665543333333333345677889999999999998878999
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceE
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC 167 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~ 167 (219)
+|+||||.++..+..++.+.+||+++++++++|+++|+|+++|+++|||+||++|+||...+.+++.|+.|++.+.+..+
T Consensus 92 ~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~ 171 (396)
T 3uk7_A 92 GLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVC 171 (396)
T ss_dssp EEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCCSSTTCE
T ss_pred EEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhccccCCCEeecCcchHHHHHHCCCEEECCCCCcce
Confidence 99999998776677899999999999999999999999999999999999999999999999999888899887654458
Q ss_pred EEcCCeEeCCCCCCHHHHHHHHHHHHccccccccceEEEec
Q 027785 168 VVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLC 208 (219)
Q Consensus 168 v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~~~~~~~~~ 208 (219)
|+|||+|||+|+.++.+|++++|+++.++.......+..+.
T Consensus 172 v~Dg~iiT~~g~~~~~d~al~li~~l~g~~~~~~~ki~ill 212 (396)
T 3uk7_A 172 VVDGSLITAATYEGHPEFIQLFVKALGGKITGANKRILFLC 212 (396)
T ss_dssp EEETTEEEESSGGGHHHHHHHHHHHTTCEEECCCCEEEEEC
T ss_pred EecCCEEEecCcccHHHHHHHHHHHHhccchhccceEEEEe
Confidence 99999999999999999999999999998764444444444
No 17
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=100.00 E-value=5.4e-38 Score=245.60 Aligned_cols=172 Identities=21% Similarity=0.234 Sum_probs=147.7
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhC-CCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~a-g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
++||+|+++|||++.|+..+.++|+++ +++++++|+++ .+.++.|..+.+|.+++++ +.+|
T Consensus 3 m~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~-----------------~V~~~~G~~v~~d~~l~~~-~~~~ 64 (206)
T 3f5d_A 3 LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDP-----------------IVSSIGGFKTSVDYIIGLE-PANF 64 (206)
T ss_dssp CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSS-----------------EEEBTTSCEEECSEETTSS-CSCC
T ss_pred ccEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCC-----------------CEEecCCcEEecCcChhhC-CcCC
Confidence 469999999999999999999999998 99999999985 2567789999999999987 4689
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH----C-CCeEecC
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA----A-GASWIEP 161 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~----~-g~~~~~~ 161 (219)
|+|+||||.++.. .++.+++||+++++++++|++||+|+++|+++|||+||++|+||. +.+++ . ++.+.+.
T Consensus 65 D~livpGG~~~~~--~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGLL~Gr~aTthw~--~~~~~~~~~~~~~~~~~~ 140 (206)
T 3f5d_A 65 NLLVMIGGDSWSN--DNKKLLHFVKTAFQKNIPIAAICGAVDFLAKNGLLNNHSHTGNFV--YLWKDYKQYKPISSFVEK 140 (206)
T ss_dssp SEEEECCBSCCCC--CCHHHHHHHHHHHHTTCCEEEETHHHHHHHHTTTTTTSCBCCSCG--GGGTTCTTCCCSSCBCCS
T ss_pred CEEEEcCCCChhh--cCHHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCCEEEccCH--HHhhhhHhhcCCCeEccC
Confidence 9999999987754 789999999999999999999999999999999999999999993 23332 2 3555543
Q ss_pred CCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc-cceEEE
Q 027785 162 ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS-DKRILF 206 (219)
Q Consensus 162 ~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~-~~~~~~ 206 (219)
.+|+|||+|||+|+. ++||++++|+.++.+.+.+ ++.++|
T Consensus 141 ----~~V~Dg~iiTs~G~a-~id~al~li~~l~~~~a~~va~~~~~ 181 (206)
T 3f5d_A 141 ----QAVRDKNLVTANGTA-PIEFTNLILEMIDFDTPENIEKMMYM 181 (206)
T ss_dssp ----SEEEETTEEEECTTC-HHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred ----CEEEECCEEECCCch-HHHHHHHHHHHhCcchHHHHHHHhhh
Confidence 399999999999985 9999999999998776666 444444
No 18
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=100.00 E-value=1.4e-38 Score=249.05 Aligned_cols=191 Identities=21% Similarity=0.381 Sum_probs=158.9
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
++||+|+++|||+..|+..++++|+.+|++++++|++++.. .++.++.|..+.++..++++++.+||
T Consensus 2 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~-------------~~v~~~~g~~v~~~~~l~~~~~~~~D 68 (205)
T 2ab0_A 2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGN-------------LAITCSRGVKLLADAPLVEVADGEYD 68 (205)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTC-------------CEEECTTSCEEECSEEHHHHTTSCCS
T ss_pred CcEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCC-------------ceeecCCCeEEecCCCHHHCCcccCC
Confidence 46999999999999999999999999999999999986410 04677889999999999888777899
Q ss_pred EEEEcCCCC-cccccCChHHHHHHHHHHhcCCeEEEEehhH-HHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcc
Q 027785 88 GLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA 165 (219)
Q Consensus 88 ~liipGG~~-~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~-~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~ 165 (219)
+||||||.+ +..+..++.+.+||+++++++|+|++||+|+ ++|+++|||+||++|+||..++.+. +..+.+.
T Consensus 69 ~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~aGlL~G~~~T~~~~~~~~~~--~~~~~~~---- 142 (205)
T 2ab0_A 69 VIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIP--AEQWLDK---- 142 (205)
T ss_dssp EEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSC--TTTBCCC----
T ss_pred EEEECCCcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHCCccCCCeEEeCccHHHHcc--CCEEecC----
Confidence 999999974 5556678999999999999999999999999 9999999999999999998665442 2344443
Q ss_pred eEEEcCCe--EeCCCCCCHHHHHHHHHHHHccccccc--cceEEEecCCchhhccc
Q 027785 166 ACVVDGNI--ITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLCGVSFCFQNL 217 (219)
Q Consensus 166 ~~v~dg~l--iT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~~~~~~~~~~ 217 (219)
.+|+|||+ |||+|+.++.+|++++|+++.|...++ ++.++|....+..++||
T Consensus 143 ~vv~Dg~i~viTs~g~~s~~d~al~li~~l~g~~~a~~va~~l~~~~~r~~~~~~~ 198 (205)
T 2ab0_A 143 RVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYYEQL 198 (205)
T ss_dssp SEEEETTTTEEEECSGGGHHHHHHHHHHHHTCHHHHHHHHTTTTCCTTSCCCCC--
T ss_pred CEEEeCCcCeEECcChhhHHHHHHHHHHHhcChHHHHHHHHhcccCCCCCchHHHH
Confidence 28889999 999999999999999999999886544 66666655544444443
No 19
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=100.00 E-value=7.7e-38 Score=249.15 Aligned_cols=177 Identities=19% Similarity=0.237 Sum_probs=154.4
Q ss_pred CCCEEEEEecCCCCchhhHHHHHHHHhCC--CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCC
Q 027785 7 GKRSVLLLCGDYMEDYEAMVPFQALLAFG--VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 84 (219)
Q Consensus 7 ~~~kv~il~~~g~~~~e~~~~~~~l~~ag--~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 84 (219)
.++||+|+++|||++.|+..++++|+.++ |+++++| +++ ++.++.|..+.+|..+++ ..
T Consensus 19 ~~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~----------------~V~ss~G~~v~~d~~l~~--~~ 79 (236)
T 3bhn_A 19 GMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKP----------------EHHSQLGMTVKTDGHVSE--VK 79 (236)
T ss_dssp -CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSS----------------EEEBTTCCEEECSEEGGG--GG
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCC----------------cEEecCCcEEecCccccc--cc
Confidence 36799999999999999999999999976 8999999 665 678888999999998887 36
Q ss_pred CccEEEEcCC-CCcccccCChHHHHHHHHHHhcCC-eEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCC
Q 027785 85 KYDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGK-TIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPE 162 (219)
Q Consensus 85 ~~D~liipGG-~~~~~~~~~~~l~~~l~~~~~~~~-~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~ 162 (219)
+||+|||||| .++..+..++.+++|| ++++++ +|++||+|+++|+++|||+||++|+||...+.|++.+..+.+.
T Consensus 80 ~~D~liVPGG~~g~~~l~~~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~- 156 (236)
T 3bhn_A 80 EQDVVLITSGYRGIPAALQDENFMSAL--KLDPSRQLIGSICAGSFVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDL- 156 (236)
T ss_dssp GCSEEEECCCTTHHHHHHTCHHHHHHC--CCCTTTCEEEEETTHHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECSS-
T ss_pred CCCEEEEcCCccCHhhhccCHHHHHHH--HhCCCCCEEEEEcHHHHHHHHcCCCCCCEEECCHHHHHHHHHhCCccCCC-
Confidence 8999999999 6765567899999999 677777 9999999999999999999999999999999999876677443
Q ss_pred CcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEec
Q 027785 163 TMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLC 208 (219)
Q Consensus 163 ~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~ 208 (219)
.+|+|||+|||+|+.+++||++++|+++.|+..++ ++.++|-.
T Consensus 157 ---~vV~Dg~iiTs~G~~a~~dlal~lIe~l~G~~~A~~va~~l~~~~ 201 (236)
T 3bhn_A 157 ---PLVIEGNIATAGGCLSLLYLVGWLAERLFDSVKRKQIQNQLIPAG 201 (236)
T ss_dssp ---SEEEETTEEEECSGGGHHHHHHHHHHHHSCHHHHHHHHTTTSCTT
T ss_pred ---cEEEeCCEEECCCHHHHHHHHHHHHHHhcCHHHHHHHHHhcccCC
Confidence 39999999999999999999999999999986544 55555543
No 20
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=100.00 E-value=6.1e-37 Score=236.70 Aligned_cols=170 Identities=22% Similarity=0.328 Sum_probs=148.6
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHh-CCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
+||+|+++|||++.|+..+.++|+. ++++++++|++++ ++.++.|..+.++..++++++.+||
T Consensus 2 ~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~----------------~v~~~~g~~v~~~~~~~~~~~~~~D 65 (188)
T 2fex_A 2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM----------------PVTSMGGLKVTPDTSYDALDPVDID 65 (188)
T ss_dssp CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS----------------CEECTTCCEEECSEEGGGCCTTTCS
T ss_pred cEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCC----------------ceeeCCCcEEeccccHHHCCcccCC
Confidence 5999999999999999999999999 9999999999876 5778889999999999988777899
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH-CCC--eEecCCCc
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGA--SWIEPETM 164 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~-~g~--~~~~~~~~ 164 (219)
+|+||||.+.. ...++.+++||+++++++++|++||+|+++|+++|||+||++|+||.....+++ ++. .+.+..+
T Consensus 66 ~livpGG~~~~-~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~~- 143 (188)
T 2fex_A 66 ALVIPGGLSWE-KGTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPR- 143 (188)
T ss_dssp EEEECCBSHHH-HTCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSS-
T ss_pred EEEECCCCccc-ccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCCC-
Confidence 99999998654 356889999999999999999999999999999999999999999976555544 453 3444331
Q ss_pred ceEEEcCCeEeCCCCCCHHHHHHHHHHHHcccccc
Q 027785 165 AACVVDGNIITGATYEGHPEFIRLFLKALGGTITG 199 (219)
Q Consensus 165 ~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~ 199 (219)
+|+|||+|||+|+. ++||++++|+++.+...+
T Consensus 144 --~v~Dg~iiTs~g~~-~~d~al~lv~~l~~~~~~ 175 (188)
T 2fex_A 144 --AVSDGGVVTAAGSA-PVSFAVEILKSLGLFGPE 175 (188)
T ss_dssp --CEEETTEEEECTTC-HHHHHHHHHHHTTCCSHH
T ss_pred --EEEECCEEECCCcc-HHHHHHHHHHHccCCCHH
Confidence 89999999999985 899999999999887543
No 21
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=100.00 E-value=2.1e-36 Score=239.68 Aligned_cols=181 Identities=23% Similarity=0.371 Sum_probs=149.8
Q ss_pred CCEEEEEec----------CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccC-----Ccc
Q 027785 8 KRSVLLLCG----------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG-----HNF 72 (219)
Q Consensus 8 ~~kv~il~~----------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~i 72 (219)
++||+|+++ +||+..|+..|+++|+.+|++++++|+++++......++.+ ...+ ..+
T Consensus 5 ~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~--------~~~~~~~~~~~i 76 (224)
T 1u9c_A 5 SKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINE--------KDPSWAEAEAAL 76 (224)
T ss_dssp CCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSS--------CCGGGHHHHHHT
T ss_pred CceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCCccccCcccccc--------HHHHHhhhhHhh
Confidence 379999999 99999999999999999999999999987642100000000 0013 567
Q ss_pred ccccCccCCCCCCccEEEEcCCCCcc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc------ccCCceEeeCC
Q 027785 73 ALNATFDEIDPTKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYP 145 (219)
Q Consensus 73 ~~~~~~~~~~~~~~D~liipGG~~~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG------lL~g~~~t~~~ 145 (219)
.++..++++++.+||+||||||.++. .+..++.+.+||+++++++|+|++||+|+++|+++| ||+||++|+||
T Consensus 77 ~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~ag~~~g~~lL~Gr~~T~~~ 156 (224)
T 1u9c_A 77 KHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFT 156 (224)
T ss_dssp TSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCEECCSC
T ss_pred cCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHccccCCCceecCcEEecCC
Confidence 88888988777789999999998864 467899999999999999999999999999999999 99999999999
Q ss_pred CCHH---------------HHHHCCCeEecCCCc-ceEEEcCCeEeCCCCCCHHHHHHHHHHHHccc
Q 027785 146 PVKP---------------VLIAAGASWIEPETM-AACVVDGNIITGATYEGHPEFIRLFLKALGGT 196 (219)
Q Consensus 146 ~~~~---------------~l~~~g~~~~~~~~~-~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~ 196 (219)
...+ .|++.++.+++.+.+ ..+|+|||+|||+|+.++++|++++|+++.++
T Consensus 157 ~~~~~~~~~~~~~p~~~~~~l~~~g~~~~~~~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~ 223 (224)
T 1u9c_A 157 DEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER 223 (224)
T ss_dssp HHHHHHHTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred CHHHhhccccccCCccHHHHHHHcCCEEecCCCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhcc
Confidence 7655 466678888766411 24899999999999999999999999998875
No 22
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=100.00 E-value=4.1e-36 Score=256.68 Aligned_cols=190 Identities=57% Similarity=1.083 Sum_probs=165.7
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
++||+|+++|||++.|+..++++|+++|++++++++++++......++....+.+.+.++.|..+.++..++++++.+||
T Consensus 205 ~~ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 284 (396)
T 3uk7_A 205 NKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYD 284 (396)
T ss_dssp CCEEEEECCTTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCS
T ss_pred cceEEEEecCCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCC
Confidence 57999999999999999999999999999999999998754333333333333445677889999999999998878999
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceE
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC 167 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~ 167 (219)
+|+||||.++..+..++.+.+||+++++++++|++||+|+++|+++|||+||++|+||...+.++..++.|++.+....+
T Consensus 285 ~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (396)
T 3uk7_A 285 ALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRC 364 (396)
T ss_dssp EEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSSTTCE
T ss_pred EEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHcCCcCCCEEecCccHHHHHHHCCCEEEcCCCceeE
Confidence 99999998766667899999999999999999999999999999999999999999999999998888888876521128
Q ss_pred EEcCCeEeCCCCCCHHHHHHHHHHHHcccc
Q 027785 168 VVDGNIITGATYEGHPEFIRLFLKALGGTI 197 (219)
Q Consensus 168 v~dg~liT~~g~~s~~~~~l~li~~l~~~~ 197 (219)
|+|||+|||+|+.++.||++++|+++.++.
T Consensus 365 v~Dg~iiTs~g~~~~~d~~l~li~~l~~~~ 394 (396)
T 3uk7_A 365 FTDGNLVTGAAWPGHPEFVSQLMALLGIQV 394 (396)
T ss_dssp EEETTEEEESSGGGHHHHHHHHHHHHTCEE
T ss_pred EEcCCEEECCCchhHHHHHHHHHHHhcccc
Confidence 999999999999999999999999998863
No 23
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=100.00 E-value=2.9e-35 Score=235.35 Aligned_cols=190 Identities=19% Similarity=0.270 Sum_probs=148.8
Q ss_pred CCEEEEEec------------CCCCchhhHHHHHHHHhCCCeEEEecCCCCCC-CCCCcc--cccCCCcceec---cccC
Q 027785 8 KRSVLLLCG------------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSG-DVCPTA--VHQSTGHQTYS---ETRG 69 (219)
Q Consensus 8 ~~kv~il~~------------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~-~~~~~~--~~~~~~~~~~~---~~~g 69 (219)
++||+|++. +||+..|+..|+++|+++|++|+++|+++++. ++.+.. ......++.+. .+.+
T Consensus 3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~ 82 (244)
T 3kkl_A 3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFN 82 (244)
T ss_dssp CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CH
T ss_pred CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHH
Confidence 469999997 38888999999999999999999999987641 111100 00001111222 2345
Q ss_pred CccccccCccCCCCCCccEEEEcCCCCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC-------cccCCceE
Q 027785 70 HNFALNATFDEIDPTKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRKC 141 (219)
Q Consensus 70 ~~i~~~~~~~~~~~~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a-------GlL~g~~~ 141 (219)
..+.++.+++++++.+||+||||||.++ ..++.++.+.+||+++++++|+|++||+|+++|+++ |||+||++
T Consensus 83 ~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a~~~~~g~gll~G~~~ 162 (244)
T 3kkl_A 83 KALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAI 162 (244)
T ss_dssp HHHHTCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCEE
T ss_pred HHhcCCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhhccccCCceeCCcee
Confidence 6788899999998889999999999986 457889999999999999999999999999999999 99999999
Q ss_pred eeCCCCHH-------------------HHHHCCCeEecC--CCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcccc
Q 027785 142 TAYPPVKP-------------------VLIAAGASWIEP--ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI 197 (219)
Q Consensus 142 t~~~~~~~-------------------~l~~~g~~~~~~--~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~ 197 (219)
|+||..++ .+++.|+.|++. +.+..+|+|||+||++|+.++.+|++++|+.+..-.
T Consensus 163 T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~~~ 239 (244)
T 3kkl_A 163 TGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYSVE 239 (244)
T ss_dssp CCSCHHHHHHHTTHHHHHHTTCCCHHHHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC--
T ss_pred cCCCcHHHHhhhhhhhccccccccHHHHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhhhh
Confidence 99998643 455568999874 112359999999999999999999999999987653
No 24
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00 E-value=1.1e-35 Score=227.16 Aligned_cols=159 Identities=19% Similarity=0.345 Sum_probs=139.7
Q ss_pred CCEEEEEecC---C---CCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCC
Q 027785 8 KRSVLLLCGD---Y---MEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI 81 (219)
Q Consensus 8 ~~kv~il~~~---g---~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~ 81 (219)
++||+|+++| | |++.|+.. ++++++++++++++. ++.++.|..+.++..++++
T Consensus 2 ~~~v~ill~~~~~g~~~~~~~e~~~------~~~~~v~~vs~~~~~---------------~v~~~~g~~v~~d~~~~~~ 60 (175)
T 3cne_A 2 AKKVAVLAVNPVNGCGLFQYLEAFF------ENGISYKVFAVSDTK---------------EIKTNSGMVLIVDDVIANL 60 (175)
T ss_dssp CCEEEEEECSSBCHHHHHHHHHHHH------HTTCEEEEEESSSSS---------------EEEBTTSCEEECSEEGGGG
T ss_pred CcEEEEEEecCcCCCccchhhheee------eCCCEEEEEECCCCC---------------ceecCCCeEEEeccCHHHh
Confidence 4799999999 8 77766665 789999999998521 6788889999999999887
Q ss_pred --CCCCccEEEEcCC--C-Cccccc---CChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH
Q 027785 82 --DPTKYDGLVIPGG--R-APEYLA---MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA 153 (219)
Q Consensus 82 --~~~~~D~liipGG--~-~~~~~~---~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~ 153 (219)
++.+||+|+|||| . ++..+. .++.+.+||+++++++++|++||+|+++|+++|||+||++|+||...+.+++
T Consensus 61 ~~~~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~G~~~T~~~~~~~~l~~ 140 (175)
T 3cne_A 61 KGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFTGITKGKKVAVHPLAKPAIQN 140 (175)
T ss_dssp TTCGGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTTTTTCEEECCGGGGGGCCS
T ss_pred ccCcccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCEEEeCccHHHHhhc
Confidence 6678999999999 6 665555 6789999999999999999999999999999999999999999998887765
Q ss_pred CCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHH
Q 027785 154 AGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL 193 (219)
Q Consensus 154 ~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l 193 (219)
..+.+.. +|+|||+|||+|+.+++||++++|+++
T Consensus 141 --~~~~~~~----~v~Dg~iiTs~g~~~~~d~al~li~~l 174 (175)
T 3cne_A 141 --GIATDEK----SEIDGNFFTAQDENTIWTMLPKVIEAL 174 (175)
T ss_dssp --SEEESSS----EEEETTEEEESSGGGGGGTHHHHHHHH
T ss_pred --CEEeCCC----EEEeCCEEeCCChHHHHHHHHHHHHHh
Confidence 5666543 999999999999999999999999987
No 25
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=100.00 E-value=4.3e-35 Score=234.89 Aligned_cols=187 Identities=20% Similarity=0.293 Sum_probs=146.8
Q ss_pred CEEEEEec------------CCCCchhhHHHHHHHHhCCCeEEEecCCCCCC-CCCCccc--ccCCCccee---ccccCC
Q 027785 9 RSVLLLCG------------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSG-DVCPTAV--HQSTGHQTY---SETRGH 70 (219)
Q Consensus 9 ~kv~il~~------------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~-~~~~~~~--~~~~~~~~~---~~~~g~ 70 (219)
+||+|++. +|++..|+..|+++|+++|++++++|+++++. ++.+... .+...++.+ ..+.|.
T Consensus 4 ~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~g~ 83 (243)
T 1rw7_A 4 KKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNK 83 (243)
T ss_dssp CEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHHH
T ss_pred ceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCCCCcCcccccccccChHHHHHHHhhhHHHHh
Confidence 59999996 68899999999999999999999999987631 1100000 000000000 112356
Q ss_pred ccccccCccCCCCCCccEEEEcCCCCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc-------ccCCceEe
Q 027785 71 NFALNATFDEIDPTKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-------VVKGRKCT 142 (219)
Q Consensus 71 ~i~~~~~~~~~~~~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG-------lL~g~~~t 142 (219)
.+.++..++++++.+||+||||||.++ ..+..++.+.+||+++++++++|++||+|+++|+++| ||+||++|
T Consensus 84 ~l~~~~~l~~v~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~ag~~~~g~~lL~G~~~T 163 (243)
T 1rw7_A 84 TLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLTDKKTGRPLIEGKSIT 163 (243)
T ss_dssp HHHTCBCGGGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCEEC
T ss_pred hhccCCChHHCCHhhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhcCcccCCceeeCCcEEe
Confidence 788888999887789999999999885 3467899999999999999999999999999999999 99999999
Q ss_pred eCCCCHHH-------------------HHHCCCeEecC--CCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcc
Q 027785 143 AYPPVKPV-------------------LIAAGASWIEP--ETMAACVVDGNIITGATYEGHPEFIRLFLKALGG 195 (219)
Q Consensus 143 ~~~~~~~~-------------------l~~~g~~~~~~--~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~ 195 (219)
+||..++. +++.|+.+... +.+..+|+|||+|||+|+.++++|++++|+++..
T Consensus 164 ~~~~~~e~~~~~~~~~p~~~~~~l~~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~~ 237 (243)
T 1rw7_A 164 GFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALKN 237 (243)
T ss_dssp CSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC-
T ss_pred ecCCHHHhhccccccccccccccHHHHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHhh
Confidence 99986554 55568888742 1122599999999999999999999999998754
No 26
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=100.00 E-value=1.7e-34 Score=231.03 Aligned_cols=189 Identities=22% Similarity=0.328 Sum_probs=149.2
Q ss_pred CCEEEEEecC------------CCCchhhHHHHHHHHhCCCeEEEecCCCCCC-CCCCccc--ccCCCcceecc---ccC
Q 027785 8 KRSVLLLCGD------------YMEDYEAMVPFQALLAFGVSVDAACPGKKSG-DVCPTAV--HQSTGHQTYSE---TRG 69 (219)
Q Consensus 8 ~~kv~il~~~------------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~-~~~~~~~--~~~~~~~~~~~---~~g 69 (219)
++||+|++.+ ||+..|+..|+++|+++|++|+++|+++++. ++..... .+...++.+.. ..+
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~ 88 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFM 88 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHHH
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHHH
Confidence 4799999976 8889999999999999999999999987531 1110000 00000011111 123
Q ss_pred Ccccc-ccCccCCCCCCccEEEEcCCCCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC------cccCCceE
Q 027785 70 HNFAL-NATFDEIDPTKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA------DVVKGRKC 141 (219)
Q Consensus 70 ~~i~~-~~~~~~~~~~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a------GlL~g~~~ 141 (219)
..+.+ +..++++++.+||+||||||.++ ..++.++.+.+||+++++++|+|++||+|+++|+++ |||+||++
T Consensus 89 ~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a~~~~g~gll~G~~~ 168 (247)
T 3n7t_A 89 EKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIKDKTV 168 (247)
T ss_dssp HHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGCBCTTSSBTTTTCEE
T ss_pred HHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHhhcccCCccccCcee
Confidence 34666 78899998889999999999987 457889999999999999999999999999999999 99999999
Q ss_pred eeCCCCHH-------------------HHHHCCCeEecC--CCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccc
Q 027785 142 TAYPPVKP-------------------VLIAAGASWIEP--ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT 196 (219)
Q Consensus 142 t~~~~~~~-------------------~l~~~g~~~~~~--~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~ 196 (219)
|+||..++ .+++.|+.|++. +.+..+|+|||+||++|+.++.+|++++|+.|...
T Consensus 169 T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~~ 244 (247)
T 3n7t_A 169 TGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGI 244 (247)
T ss_dssp CCCCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHhhhhhhhhccccchhhHHHHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhhh
Confidence 99998743 355678999874 11235999999999999999999999999988653
No 27
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=100.00 E-value=1.6e-34 Score=236.85 Aligned_cols=189 Identities=16% Similarity=0.226 Sum_probs=150.9
Q ss_pred CCEEEEEecC--------------CCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceecccc---CC
Q 027785 8 KRSVLLLCGD--------------YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR---GH 70 (219)
Q Consensus 8 ~~kv~il~~~--------------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---g~ 70 (219)
+|||+|++.+ ||+..|+..|+++|+++|++++++|+++++.....+++...+ ..+.... |.
T Consensus 48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~~v~~d~~s~~~~~--~~~~~~~~~~g~ 125 (291)
T 1n57_A 48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKD--EKVMPFFEQHKS 125 (291)
T ss_dssp SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTC--TTHHHHHHHHHH
T ss_pred CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCccccccccccccc--HHHHHHHHhccc
Confidence 4799999985 799999999999999999999999998865321111111000 0112222 67
Q ss_pred ccccccCccCC-----CCCCccEEEEcCCCCcc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc----ccCCce
Q 027785 71 NFALNATFDEI-----DPTKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD----VVKGRK 140 (219)
Q Consensus 71 ~i~~~~~~~~~-----~~~~~D~liipGG~~~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG----lL~g~~ 140 (219)
.+.++..++++ ++.+||+||||||.++. .+..++.+.+||+++++++++|++||+|+++|++++ ||+||+
T Consensus 126 ~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~~~~GLL~Gr~ 205 (291)
T 1n57_A 126 LFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYS 205 (291)
T ss_dssp HHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCE
T ss_pred eecCCccHHHHhhhccCcccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhcccCccCCCCE
Confidence 78888888873 56799999999998876 577899999999999999999999999999988884 999999
Q ss_pred EeeCCCCHHHH-------------------HHCCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccc
Q 027785 141 CTAYPPVKPVL-------------------IAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTIT 198 (219)
Q Consensus 141 ~t~~~~~~~~l-------------------~~~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~ 198 (219)
+|+||...+.+ ++.|+.+++.+.+..+|+|||+|||+|+.++++|++++|+++.++..
T Consensus 206 ~Tt~~~~~e~~~~~~~~~~~~~P~~le~~L~~~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~~ 282 (291)
T 1n57_A 206 ICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYA 282 (291)
T ss_dssp ECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHHHC
T ss_pred EEeCCCHHHhhhccccccccccchhHHHHHHHCCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHHHhCchh
Confidence 99999877654 34477777322223499999999999999999999999999988755
No 28
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=100.00 E-value=2e-33 Score=223.78 Aligned_cols=180 Identities=21% Similarity=0.269 Sum_probs=144.3
Q ss_pred CCEEEEEec-----CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccc-------
Q 027785 8 KRSVLLLCG-----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN------- 75 (219)
Q Consensus 8 ~~kv~il~~-----~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~------- 75 (219)
++||+|+++ +||+..|+..|+++|+.+|++++++|+++++... +...++ .++.++.|+.+.++
T Consensus 6 m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v----~d~~s~-~~~~~~~g~~i~~~~~~~~~~ 80 (232)
T 1vhq_A 6 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDV----INHLTG-EAMTETRNVLIEAARITRGEI 80 (232)
T ss_dssp CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCC----BCTTTC-CBCSCCCBHHHHHTTTTTTCC
T ss_pred CCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcc----cccccc-cchhhhhhhhHHHHHhhhcCC
Confidence 469999999 9999999999999999999999999998764110 000011 13455667777666
Q ss_pred cCccCCCCCCccEEEEcCCCCcc-----------cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccC-CceEee
Q 027785 76 ATFDEIDPTKYDGLVIPGGRAPE-----------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVK-GRKCTA 143 (219)
Q Consensus 76 ~~~~~~~~~~~D~liipGG~~~~-----------~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~-g~~~t~ 143 (219)
..++++++.+||+||||||.++. .++.++.+.+||+++++++++|++||+|+++|+++ |+ ||++|+
T Consensus 81 ~~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a--L~~Gr~~Tt 158 (232)
T 1vhq_A 81 RPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI--FDFPLRLTI 158 (232)
T ss_dssp EEGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHH--CSSCCEECC
T ss_pred CCHHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHH--hcCCCEEec
Confidence 78888777789999999998752 12248999999999999999999999999999999 79 999999
Q ss_pred C-C-CCHHHHHHCCCeEecCCCcceEEE-cCCeEeCCCCCCHHHHHHHHHHHHccccc
Q 027785 144 Y-P-PVKPVLIAAGASWIEPETMAACVV-DGNIITGATYEGHPEFIRLFLKALGGTIT 198 (219)
Q Consensus 144 ~-~-~~~~~l~~~g~~~~~~~~~~~~v~-dg~liT~~g~~s~~~~~l~li~~l~~~~~ 198 (219)
| | ..++.|++.|+.+++...+..+++ |||+|||+ ++++++++|+++.|...
T Consensus 159 h~~~~~~~~l~~~g~~~~~~~~~~~~vd~dg~liTs~----~~d~al~lv~~~~G~~~ 212 (232)
T 1vhq_A 159 GTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP----AYMLAQNIAEAASGIDK 212 (232)
T ss_dssp CSCHHHHHHHHHTTCEECCCCTTCCEEETTTTEEEEC----GGGTCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCEEecCCCCceEEecCCCEEECC----CHHHHHHHHHHHcCHHH
Confidence 9 5 677888888888887532223554 59999996 88999999999988843
No 29
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=99.97 E-value=5.6e-32 Score=215.88 Aligned_cols=168 Identities=21% Similarity=0.250 Sum_probs=135.3
Q ss_pred CCEEEEEec-----CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccc-------
Q 027785 8 KRSVLLLCG-----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN------- 75 (219)
Q Consensus 8 ~~kv~il~~-----~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~------- 75 (219)
++||+|++. +||+..|+..|+++|+++|++++++|+++++... ..+.++ .++.++.|+.+.++
T Consensus 23 ~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~----~~~~~g-~~v~~s~g~~v~~d~~~~~~~ 97 (242)
T 3l3b_A 23 ALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQV----VDHKKK-ESVGEVRNILVESARIARGSV 97 (242)
T ss_dssp -CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCE----EETTTT-EEESCCCBHHHHHHHHTTTCE
T ss_pred cCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccc----cccccC-ccccccCCeEEecchhccccC
Confidence 379999998 9999999999999999999999999998764221 111111 24566778888777
Q ss_pred cCccCCCCCCccEEEEcCCCCcc----c--------ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc-ccCCceEe
Q 027785 76 ATFDEIDPTKYDGLVIPGGRAPE----Y--------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-VVKGRKCT 142 (219)
Q Consensus 76 ~~~~~~~~~~~D~liipGG~~~~----~--------~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG-lL~g~~~t 142 (219)
.+++++++.+||+||||||.++. . +..++.+.+||+++++++|+|++||+|+++|+++| ||+||++|
T Consensus 98 ~~l~dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag~lL~Gr~~T 177 (242)
T 3l3b_A 98 YDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALLKDIAKVKVT 177 (242)
T ss_dssp EEGGGCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHHTTTCCCEEC
T ss_pred CChHHCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhCcccCCCEEE
Confidence 67888887899999999998641 1 25679999999999999999999999999999999 99999999
Q ss_pred eCCCCHHHHHHCCCeEecCCCcceEEEc--CCeEeCCCCCC
Q 027785 143 AYPPVKPVLIAAGASWIEPETMAACVVD--GNIITGATYEG 181 (219)
Q Consensus 143 ~~~~~~~~l~~~g~~~~~~~~~~~~v~d--g~liT~~g~~s 181 (219)
+||.....+++.|+.|++.+. ..+|+| ||+||+.+...
T Consensus 178 ~~~~~~~~l~~~Ga~~~~~~~-~~vVvD~~g~liTs~a~~~ 217 (242)
T 3l3b_A 178 IGEDSNGLIDKMGGVHVDCPT-IKSVKDDVNRIFSCSAYMR 217 (242)
T ss_dssp CCC----CHHHHTCEECCCCT-TCCEEETTTTEEEECGGGS
T ss_pred ecCChHHHHHHCCCEEEcCCC-CeEEEECCCCEEECcCccc
Confidence 999988778888999998531 137778 99999998743
No 30
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=99.91 E-value=1.5e-24 Score=194.67 Aligned_cols=151 Identities=18% Similarity=0.232 Sum_probs=131.4
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
++||+||+++|++..|+..++++|+.+|+++.++|++++ .+.++.|..+.++..++++++.+||
T Consensus 534 ~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg----------------~V~ss~G~~v~~d~~l~~v~~~~yD 597 (715)
T 1sy7_A 534 SRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS----------------KVTAANGSTVQPHHHLEGFRSTMVD 597 (715)
T ss_dssp TCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS----------------CEEBTTSCEECCSEETTTCCGGGSS
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCC----------------ceecCCCceEecccccccCCcccCC
Confidence 689999999999999999999999999999999999876 5777889999999999988777899
Q ss_pred EEEEcCCC-CcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC-cccCCceEeeCCCCHHHHHHCCCeEecCCCcc
Q 027785 88 GLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-DVVKGRKCTAYPPVKPVLIAAGASWIEPETMA 165 (219)
Q Consensus 88 ~liipGG~-~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a-GlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~ 165 (219)
+||||||. ++..+..++.+++||+++++++|+|++||+|+++|+++ ||.+- ++.|+ .
T Consensus 598 aViVPGG~~~~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlGL~~L-------------~~aGa-----~--- 656 (715)
T 1sy7_A 598 AIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQV-------------TVSSE-----A--- 656 (715)
T ss_dssp EEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHCCTTS-------------CCCCS-----S---
T ss_pred EEEEcCCcccHhhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccCcHhH-------------HhcCC-----C---
Confidence 99999995 55556789999999999999999999999999999999 98322 12222 2
Q ss_pred eEEEcCCeEeCCCCC------------CHHHHHHHHHHHHcc
Q 027785 166 ACVVDGNIITGATYE------------GHPEFIRLFLKALGG 195 (219)
Q Consensus 166 ~~v~dg~liT~~g~~------------s~~~~~l~li~~l~~ 195 (219)
.+|+||++||++|+. ++.+++.++++.|..
T Consensus 657 ~VVvDg~lITs~gp~~~~l~~~~~i~~s~~~fa~~fi~~L~~ 698 (715)
T 1sy7_A 657 EVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQ 698 (715)
T ss_dssp SCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHHHHHHHHHT
T ss_pred cEEEeCCEEECCCCcccccccccccccCHHHHHHHHHHHHHc
Confidence 388999999999986 677899999998864
No 31
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=99.84 E-value=7.9e-21 Score=169.37 Aligned_cols=112 Identities=20% Similarity=0.199 Sum_probs=106.2
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
++||+||+.+||+..|+..++++|+++|+++.+++++++ .+.++.|..+.+|.+++++++.+||
T Consensus 600 grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g----------------~V~gs~G~~V~aD~t~~~v~s~~fD 663 (753)
T 3ttv_A 600 GRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG----------------EVTADDGTVLPIAATFAGAPSLTVD 663 (753)
T ss_dssp TCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS----------------EEECTTSCEEECCEETTTSCGGGCS
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCC----------------eEEeCCCCEEecccchhhCCCcCCC
Confidence 689999999999999999999999999999999999876 6888899999999999999888899
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCccc
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV 136 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL 136 (219)
+|||||| ++..++.++.+++||+++++++|+|++||+|+++|+++||-
T Consensus 664 ALVVPGG-g~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~AGL~ 711 (753)
T 3ttv_A 664 AVIVPCG-NIADIADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIA 711 (753)
T ss_dssp EEEECCS-CGGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGGTCC
T ss_pred EEEECCC-ChHHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHHHcCCC
Confidence 9999999 88778899999999999999999999999999999999983
No 32
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=99.72 E-value=2.3e-17 Score=146.65 Aligned_cols=130 Identities=18% Similarity=0.216 Sum_probs=110.7
Q ss_pred CCEEEEEec--CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785 8 KRSVLLLCG--DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 85 (219)
Q Consensus 8 ~~kv~il~~--~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 85 (219)
++||+||+. +|++..|+..+.++|+++|.++.++++..+ . .+|.+++++++.+
T Consensus 529 g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g-----------------------~--~vD~t~~~~~s~~ 583 (688)
T 2iuf_A 529 GLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXA-----------------------N--NVDETYSASDAVQ 583 (688)
T ss_dssp TCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCC-----------------------T--TCCEESTTCCGGG
T ss_pred CCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCC-----------------------c--ccccchhcCCccc
Confidence 689999999 999999999999999999999999998643 0 5688888888889
Q ss_pred ccEEEEcCCC-C----------------cccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCH
Q 027785 86 YDGLVIPGGR-A----------------PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVK 148 (219)
Q Consensus 86 ~D~liipGG~-~----------------~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~ 148 (219)
||+||||||. + +..+..++.+++||++++++||+|++||+|+++|..+|+..
T Consensus 584 fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~aGi~~----------- 652 (688)
T 2iuf_A 584 FDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESGQISS----------- 652 (688)
T ss_dssp CSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHTTCCT-----------
T ss_pred cCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHcCCCC-----------
Confidence 9999999995 5 56688899999999999999999999999999999999853
Q ss_pred HHHHHCCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcc
Q 027785 149 PVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGG 195 (219)
Q Consensus 149 ~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~ 195 (219)
.|+++||+.++ .-+++..+++.+..
T Consensus 653 --------------------~d~GVvts~~~--~~~f~~~fi~~la~ 677 (688)
T 2iuf_A 653 --------------------ERQGVYTGKNA--GDAFAKDIKSGLST 677 (688)
T ss_dssp --------------------TSTTEEEESSS--SHHHHHHHHHHHHH
T ss_pred --------------------CCCCEEEcCCc--cHHHHHHHHHHHHh
Confidence 24667777666 44577777776654
No 33
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=99.68 E-value=1.6e-16 Score=141.05 Aligned_cols=104 Identities=18% Similarity=0.151 Sum_probs=94.0
Q ss_pred CCEEEEEecCC-CCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 8 KRSVLLLCGDY-MEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 8 ~~kv~il~~~g-~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
+|||+||+.+| ++..|+..+.+.|+++|..+.++++..+ .| +|.+++++++.+|
T Consensus 537 grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g---------------------~G----vD~t~~~~~s~~f 591 (688)
T 3ej6_A 537 TLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLA---------------------SG----VDQTYSAADATAF 591 (688)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC---------------------TT----CCEETTTCCGGGC
T ss_pred CCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCC---------------------CC----cccCcccCChhcC
Confidence 68999999999 9999999999999999999999998753 13 6888999888999
Q ss_pred cEEEEcCCCCc--------ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCccc
Q 027785 87 DGLVIPGGRAP--------EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV 136 (219)
Q Consensus 87 D~liipGG~~~--------~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL 136 (219)
|+|+||||... ..++.++.+++||+++++++|+|++||+|+++|..+|+-
T Consensus 592 DAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~AGI~ 649 (688)
T 3ej6_A 592 DAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSIGVE 649 (688)
T ss_dssp SEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHTTCC
T ss_pred cEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHcCCC
Confidence 99999999632 557889999999999999999999999999999999983
No 34
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.29 E-value=4.7e-12 Score=98.69 Aligned_cols=93 Identities=23% Similarity=0.319 Sum_probs=73.6
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
+||+|+.+++++.. ..+.+.|+.+|+++.+++.. + +..++|.
T Consensus 3 ~~i~il~~~~~~~~--~~~~~~l~~~g~~~~~~~~~----------------------------------~--~~~~~d~ 44 (213)
T 3d54_D 3 PRACVVVYPGSNCD--RDAYHALEINGFEPSYVGLD----------------------------------D--KLDDYEL 44 (213)
T ss_dssp CEEEEECCTTEEEH--HHHHHHHHTTTCEEEEECTT----------------------------------C--CCSSCSE
T ss_pred cEEEEEEcCCCCcc--HHHHHHHHHCCCEEEEEecC----------------------------------C--CcccCCE
Confidence 58999999988741 24589999999988887431 1 1247999
Q ss_pred EEEcCCCCc-cc-----ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCc
Q 027785 89 LVIPGGRAP-EY-----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR 139 (219)
Q Consensus 89 liipGG~~~-~~-----~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~ 139 (219)
||||||.+. .. ...++.+.+||+++.+++++|++||.|.++|+.+|+|+|+
T Consensus 45 lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~ 101 (213)
T 3d54_D 45 IILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGA 101 (213)
T ss_dssp EEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSE
T ss_pred EEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCC
Confidence 999999653 22 1234678999999999999999999999999999999994
No 35
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=98.77 E-value=3e-08 Score=79.08 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=69.8
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
+|||+||....++ ....+...|+..|++++++....+. . +.. +..+||
T Consensus 3 ~~~vliiqh~~~e--~~~~i~~~l~~~G~~v~v~~~~~~~-----------------------~------~p~-~~~~~d 50 (250)
T 3m3p_A 3 LKPVMIIQFSASE--GPGHFGDFLAGEHIPFQVLRMDRSD-----------------------P------LPA-EIRDCS 50 (250)
T ss_dssp CCCEEEEESSSSC--CCHHHHHHHHHTTCCEEEEEGGGTC-----------------------C------CCS-CGGGSS
T ss_pred CCeEEEEECCCCC--CHHHHHHHHHHCCCeEEEEeccCCC-----------------------c------CcC-ccccCC
Confidence 4589999988887 5556667799999999888654320 0 111 124799
Q ss_pred EEEEcCCCCc-cc-ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 88 GLVIPGGRAP-EY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 88 ~liipGG~~~-~~-~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.|||+||... .. .+....+.++|+++.+.++||.+||.|.++|+.+
T Consensus 51 ~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~~~ 98 (250)
T 3m3p_A 51 GLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKA 98 (250)
T ss_dssp EEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred EEEECCCCCcccccchHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence 9999999753 21 2223567899999999999999999999999976
No 36
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=98.74 E-value=7.4e-08 Score=76.15 Aligned_cols=93 Identities=17% Similarity=0.266 Sum_probs=69.2
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
+||+++..+.++ ....+.+.++..|++++++....+ - .+.+ +..+||+
T Consensus 1 m~i~vi~h~~~e--~~g~~~~~l~~~g~~~~~~~~~~~-----------------------~------~~p~-~~~~~d~ 48 (236)
T 3l7n_A 1 MRIHFILHETFE--APGAYLAWAALRGHDVSMTKVYRY-----------------------E------KLPK-DIDDFDM 48 (236)
T ss_dssp CEEEEEECCTTS--CCHHHHHHHHHTTCEEEEEEGGGT-----------------------C------CCCS-CGGGCSE
T ss_pred CeEEEEeCCCCC--CchHHHHHHHHCCCeEEEEeeeCC-----------------------C------CCCC-CccccCE
Confidence 389999988888 555666789999999988865422 0 1111 2347999
Q ss_pred EEEcCCCCc-cc----ccCC--hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRAP-EY----LAMN--DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~~-~~----~~~~--~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|||+||++. .. .+.- ....++|+++.++++||.+||.|.++|+.+
T Consensus 49 lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 100 (236)
T 3l7n_A 49 LILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVA 100 (236)
T ss_dssp EEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHH
T ss_pred EEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCEEEEchHHHHHHHH
Confidence 999999864 21 1111 347899999999999999999999999976
No 37
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=98.66 E-value=2.5e-08 Score=77.99 Aligned_cols=86 Identities=22% Similarity=0.381 Sum_probs=63.5
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
.+||+|+.+++ .+....+.|+++|.++.+++.. +++ .++|
T Consensus 23 ~~~I~il~~~~----~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~l--~~~D 62 (219)
T 1q7r_A 23 NMKIGVLGLQG----AVREHVRAIEACGAEAVIVKKS----------------------------------EQL--EGLD 62 (219)
T ss_dssp CCEEEEESCGG----GCHHHHHHHHHTTCEEEEECSG----------------------------------GGG--TTCS
T ss_pred CCEEEEEeCCC----CcHHHHHHHHHCCCEEEEECCH----------------------------------HHH--hhCC
Confidence 56899997654 2334568899999988776431 112 3699
Q ss_pred EEEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 88 GLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 88 ~liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.||+|||.+.. .+..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus 63 glil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~ 110 (219)
T 1q7r_A 63 GLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKR 110 (219)
T ss_dssp EEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEE
T ss_pred EEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 99999997531 12223456799999999999999999999999975
No 38
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=98.65 E-value=2.7e-08 Score=76.35 Aligned_cols=85 Identities=24% Similarity=0.358 Sum_probs=61.7
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
+||+|+-+.+ .+....+.|+++|.++.++++. ++ ..++|.
T Consensus 2 m~I~il~~~~----~~~~~~~~l~~~g~~~~~~~~~----------------------------------~~--l~~~d~ 41 (196)
T 2nv0_A 2 LTIGVLGLQG----AVREHIHAIEACGAAGLVVKRP----------------------------------EQ--LNEVDG 41 (196)
T ss_dssp CEEEEECSSS----CCHHHHHHHHHTTCEEEEECSG----------------------------------GG--GGGCSE
T ss_pred cEEEEEEccC----CcHHHHHHHHHCCCEEEEeCCh----------------------------------HH--HhhCCE
Confidence 5899997532 3334468899999988776421 11 136999
Q ss_pred EEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|++|||.... .++....+.++|+++.++++|+.+||.|.++|+.+
T Consensus 42 iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~ 88 (196)
T 2nv0_A 42 LILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE 88 (196)
T ss_dssp EEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred EEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHHHHHHHHH
Confidence 9999997421 12223445899999999999999999999999985
No 39
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=98.54 E-value=7e-08 Score=74.77 Aligned_cols=86 Identities=20% Similarity=0.299 Sum_probs=62.8
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
++||+|+-+++ .+....+.|+.+|.++.+++.. +++ .++|
T Consensus 20 ~~~I~ii~~~~----~~~~~~~~l~~~g~~~~~~~~~----------------------------------~~l--~~~d 59 (208)
T 2iss_D 20 HMKIGVLGVQG----DVREHVEALHKLGVETLIVKLP----------------------------------EQL--DMVD 59 (208)
T ss_dssp CCEEEEECSSS----CHHHHHHHHHHTTCEEEEECSG----------------------------------GGG--GGCS
T ss_pred CcEEEEEECCC----chHHHHHHHHHCCCEEEEeCCh----------------------------------HHH--hhCC
Confidence 46899996533 5666788888999888776421 011 3699
Q ss_pred EEEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 88 GLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 88 ~liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.|++|||.... .+.....+.++|+++.++++||.+||.|.++|+.+
T Consensus 60 ~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 107 (208)
T 2iss_D 60 GLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAGVILLAKR 107 (208)
T ss_dssp EEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHEEE
T ss_pred EEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHHHHHHHHH
Confidence 99999985321 11122346789999999999999999999999976
No 40
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=98.53 E-value=2.9e-07 Score=87.84 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=72.7
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
+.||+|+.++|.+- .......|+.+|+++.++.... +..+ -. ...++|
T Consensus 1047 ~pkVaIi~~~G~N~--~~~~~~A~~~aG~~~~~v~~~d--------------------------l~~~--~~--~l~~~d 1094 (1303)
T 3ugj_A 1047 RPKVAVLREQGVNS--HVEMAAAFHRAGFDAIDVHMSD--------------------------LLGG--RI--GLGNFH 1094 (1303)
T ss_dssp CCEEEEEECTTCCC--HHHHHHHHHHTTCEEEEEEHHH--------------------------HHTT--SC--CGGGCS
T ss_pred CCEEEEEecCCcCC--HHHHHHHHHHhCCceEEEeecc--------------------------cccC--cc--cHhhCC
Confidence 35899999999883 3445668889999887763210 0000 01 124799
Q ss_pred EEEEcCCCCccc-----------ccCChHHHHHHHHHH-hcCCeEEEEehhHHHHHhC-cccCCc
Q 027785 88 GLVIPGGRAPEY-----------LAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAA-DVVKGR 139 (219)
Q Consensus 88 ~liipGG~~~~~-----------~~~~~~l~~~l~~~~-~~~~~v~~ic~G~~~La~a-GlL~g~ 139 (219)
.|++|||....+ ...++.+.+.|++++ ++++++.+||+|.++|.++ |||.|.
T Consensus 1095 ~lvlPGGfSygD~l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~ 1159 (1303)
T 3ugj_A 1095 ALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGS 1159 (1303)
T ss_dssp EEEECCSCGGGGTTSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTC
T ss_pred EEEECCCCcchhhhccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCC
Confidence 999999964211 234567888889876 5899999999999999999 999986
No 41
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=98.50 E-value=2.1e-07 Score=71.58 Aligned_cols=86 Identities=24% Similarity=0.241 Sum_probs=62.2
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
+||+|+-+ ++. .+....+.|+++|.++.+++.. ++ ..++|.
T Consensus 3 ~~I~iid~-~~~--~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~--l~~~d~ 43 (200)
T 1ka9_H 3 MKALLIDY-GSG--NLRSAAKALEAAGFSVAVAQDP----------------------------------KA--HEEADL 43 (200)
T ss_dssp CEEEEECS-SCS--CHHHHHHHHHHTTCEEEEESST----------------------------------TS--CSSCSE
T ss_pred cEEEEEeC-CCc--cHHHHHHHHHHCCCeEEEecCh----------------------------------HH--cccCCE
Confidence 58988844 322 4455689999999988877421 01 236999
Q ss_pred EEEcCCCCccc-c--cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRAPEY-L--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~~~~-~--~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|++||+..+.. . ..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus 44 lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~ 91 (200)
T 1ka9_H 44 LVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEG 91 (200)
T ss_dssp EEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred EEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHh
Confidence 99998543211 1 112457899999999999999999999999998
No 42
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.45 E-value=1.7e-07 Score=71.47 Aligned_cols=85 Identities=24% Similarity=0.308 Sum_probs=63.5
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
++|+|+..++ .+....+.|+++|.++.+++.. . ++ .++|.
T Consensus 3 p~Igi~~~~~----~~~~~~~~l~~~G~~~~~~~~~-------------------------------~---~l--~~~dg 42 (191)
T 2ywd_A 3 GVVGVLALQG----DFREHKEALKRLGIEAKEVRKK-------------------------------E---HL--EGLKA 42 (191)
T ss_dssp CCEEEECSSS----CHHHHHHHHHTTTCCCEEECSG-------------------------------G---GG--TTCSE
T ss_pred cEEEEEecCC----chHHHHHHHHHCCCEEEEeCCh-------------------------------h---hh--ccCCE
Confidence 4799998764 4567889999999877766421 0 11 36899
Q ss_pred EEEcCCCCc--ccccCChHHHHHHHHHHhcC-CeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRAP--EYLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~~--~~~~~~~~l~~~l~~~~~~~-~~v~~ic~G~~~La~a 133 (219)
|++|||... ..+..+..+.++|+++.+++ +||.+||.|.++|+.+
T Consensus 43 lil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~ 90 (191)
T 2ywd_A 43 LIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKE 90 (191)
T ss_dssp EEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEE
T ss_pred EEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECHHHHHHHHH
Confidence 999999521 22222345789999999999 9999999999999976
No 43
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=98.36 E-value=9.2e-07 Score=67.31 Aligned_cols=86 Identities=16% Similarity=0.302 Sum_probs=61.9
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV 90 (219)
Q Consensus 11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li 90 (219)
|+|+-+.+.. ...+.+.|+++|.++.++.... .++++...++|.|+
T Consensus 3 i~iid~~~~~---~~~~~~~l~~~G~~~~~~~~~~-------------------------------~~~~~~~~~~dgli 48 (189)
T 1wl8_A 3 IVIMDNGGQY---VHRIWRTLRYLGVETKIIPNTT-------------------------------PLEEIKAMNPKGII 48 (189)
T ss_dssp EEEEECSCTT---HHHHHHHHHHTTCEEEEEETTC-------------------------------CHHHHHHTCCSEEE
T ss_pred EEEEECCCch---HHHHHHHHHHCCCeEEEEECCC-------------------------------ChHHhcccCCCEEE
Confidence 6666554332 4577889999999988876532 11111113699999
Q ss_pred EcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 91 IPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 91 ipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+|||..+. ....+.++|+++.++++|+.+||.|.++|+.+
T Consensus 49 l~Gg~~~~---~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~~ 88 (189)
T 1wl8_A 49 FSGGPSLE---NTGNCEKVLEHYDEFNVPILGICLGHQLIAKF 88 (189)
T ss_dssp ECCCSCTT---CCTTHHHHHHTGGGTCSCEEEETHHHHHHHHH
T ss_pred ECCCCChh---hhhhHHHHHHHHhhCCCeEEEEcHHHHHHHHH
Confidence 99997332 24556889987778999999999999999986
No 44
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=98.33 E-value=3.5e-07 Score=71.70 Aligned_cols=86 Identities=19% Similarity=0.291 Sum_probs=62.2
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhC---CCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAF---GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 84 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~a---g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 84 (219)
.++|+|+.+++. +....+.|+++ |.++..++.. +++ .
T Consensus 3 ~~~I~Il~~~~~----~~~~~~~l~~~~~~G~~~~~~~~~----------------------------------~~l--~ 42 (227)
T 2abw_A 3 EITIGVLSLQGD----FEPHINHFIKLQIPSLNIIQVRNV----------------------------------HDL--G 42 (227)
T ss_dssp CEEEEEECTTSC----CHHHHHHHHTTCCTTEEEEEECSH----------------------------------HHH--H
T ss_pred CcEEEEEeCCCC----cHHHHHHHHHhccCCeEEEEEcCc----------------------------------ccc--c
Confidence 358999987642 34568888888 8766555321 111 2
Q ss_pred CccEEEEcCCCCc--ccccCC--hHHHHHHHHHHhc-CCeEEEEehhHHHHHhC
Q 027785 85 KYDGLVIPGGRAP--EYLAMN--DSVIDLVRKFSNS-GKTIASICHGQLILAAA 133 (219)
Q Consensus 85 ~~D~liipGG~~~--~~~~~~--~~l~~~l~~~~~~-~~~v~~ic~G~~~La~a 133 (219)
++|.||+|||... ..+..+ ..+.++|+++.++ ++||.+||.|.++|+.+
T Consensus 43 ~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~ 96 (227)
T 2abw_A 43 LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN 96 (227)
T ss_dssp TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHH
Confidence 5999999998632 122222 5689999999999 99999999999999986
No 45
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=98.23 E-value=2.3e-06 Score=64.85 Aligned_cols=81 Identities=20% Similarity=0.296 Sum_probs=56.5
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL 89 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 89 (219)
||+|+-.++ .+....+.|+++|.++.+++.. . + ..++|.|
T Consensus 2 ~i~vl~~~g----~~~~~~~~l~~~G~~~~~~~~~-------------------------------~---~--~~~~dgl 41 (186)
T 2ywj_A 2 IIGVLAIQG----DVEEHEEAIKKAGYEAKKVKRV-------------------------------E---D--LEGIDAL 41 (186)
T ss_dssp EEEEECSSS----CCHHHHHHHHHTTSEEEEECSG-------------------------------G---G--GTTCSEE
T ss_pred EEEEEecCc----chHHHHHHHHHCCCEEEEECCh-------------------------------H---H--hccCCEE
Confidence 799996644 3455678999999888776421 0 1 2368999
Q ss_pred EEcCCCCccc--ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 90 VIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 90 iipGG~~~~~--~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
++|||.+... ......+.++++ ++++||.+||.|.++|+.+
T Consensus 42 il~GG~~~~~~~~~~~~~~~~~i~---~~~~PilGIC~G~Qll~~~ 84 (186)
T 2ywj_A 42 IIPGGESTAIGKLMKKYGLLEKIK---NSNLPILGTCAGMVLLSKG 84 (186)
T ss_dssp EECCSCHHHHHHHHHHTTHHHHHH---TCCCCEEEETHHHHHHSSC
T ss_pred EECCCCchhhhhhhhccCHHHHHH---hcCCcEEEECHHHHHHHHH
Confidence 9999975321 111123455665 7899999999999999987
No 46
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=98.19 E-value=2.9e-06 Score=65.13 Aligned_cols=85 Identities=20% Similarity=0.302 Sum_probs=58.1
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCC-----CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCC
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFG-----VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 84 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag-----~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 84 (219)
||+|+-+..-+ +......|++.| .++.+++.. + + .
T Consensus 2 ~I~iid~~~g~---~~s~~~~l~~~G~~~~~~~~~~~~~~------------------------------~------~-~ 41 (201)
T 1gpw_B 2 RIGIISVGPGN---IMNLYRGVKRASENFEDVSIELVESP------------------------------R------N-D 41 (201)
T ss_dssp EEEEECCSSSC---CHHHHHHHHHHSTTBSSCEEEEECSC------------------------------C------S-S
T ss_pred EEEEEecCCch---HHHHHHHHHHcCCCCCceEEEEECCC------------------------------c------c-c
Confidence 78888665222 244456788878 777765321 1 1 3
Q ss_pred CccEEEEcCCCCccc-cc--CChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc
Q 027785 85 KYDGLVIPGGRAPEY-LA--MNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (219)
Q Consensus 85 ~~D~liipGG~~~~~-~~--~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG 134 (219)
++|.|++||+..+.. .. .+..+.++|+++.++++||.+||.|.++|+.+.
T Consensus 42 ~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~ 94 (201)
T 1gpw_B 42 LYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEES 94 (201)
T ss_dssp CCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEE
T ss_pred CCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhh
Confidence 699999999633221 11 011367899999999999999999999999874
No 47
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=98.17 E-value=2.2e-06 Score=65.63 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=59.5
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV 90 (219)
Q Consensus 11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li 90 (219)
|+|+-..+.. -..+.+.|+++|.++.++..+.. .++++...++|.|+
T Consensus 4 i~iid~~~s~---~~~~~~~l~~~G~~~~v~~~~~~------------------------------~~~~~~~~~~dgli 50 (195)
T 1qdl_B 4 TLIIDNYDSF---VYNIAQIVGELGSYPIVIRNDEI------------------------------SIKGIERIDPDRLI 50 (195)
T ss_dssp EEEEECSCSS---HHHHHHHHHHTTCEEEEEETTTS------------------------------CHHHHHHHCCSEEE
T ss_pred EEEEECCCch---HHHHHHHHHhCCCEEEEEeCCCC------------------------------CHHHHhhCCCCEEE
Confidence 7777643322 24678899999999888765321 11122112599999
Q ss_pred EcCCCCccc-ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 91 IPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 91 ipGG~~~~~-~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
++||.+... ..+.+...++|+++ +.++|+.+||.|.++|+.+
T Consensus 51 l~gG~~~~~~~~~~~~~~~~i~~~-~~~~PvLGIC~G~QlL~~~ 93 (195)
T 1qdl_B 51 ISPGPGTPEKREDIGVSLDVIKYL-GKRTPILGVCLGHQAIGYA 93 (195)
T ss_dssp ECCCSSCTTSHHHHTTHHHHHHHH-TTTSCEEEETHHHHHHHHH
T ss_pred ECCCCCChhhhhhhhHHHHHHHHh-cCCCcEEEEehHHHHHHHH
Confidence 988876422 11122356888875 7899999999999999986
No 48
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=98.13 E-value=7.6e-07 Score=68.93 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=58.6
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
++||+|+=|- ..-+..+...|++.|.++.+++.. +++ .++|
T Consensus 2 ~~~I~iiD~g---~~n~~si~~al~~~G~~~~v~~~~----------------------------------~~l--~~~D 42 (211)
T 4gud_A 2 TQNVVIIDTG---CANISSVKFAIERLGYAVTISRDP----------------------------------QVV--LAAD 42 (211)
T ss_dssp -CCEEEECCC---CTTHHHHHHHHHHTTCCEEEECCH----------------------------------HHH--HHCS
T ss_pred CCEEEEEECC---CChHHHHHHHHHHCCCEEEEECCH----------------------------------HHH--hCCC
Confidence 4688887442 234566788899999988775321 111 2579
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.||+||+..+......-...++++...+.++||.+||.|.++|+.+
T Consensus 43 ~lilPG~g~~~~~~~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~ 88 (211)
T 4gud_A 43 KLFLPGVGTASEAMKNLTERDLIELVKRVEKPLLGICLGMQLLGKL 88 (211)
T ss_dssp EEEECCCSCHHHHHHHHHHTTCHHHHHHCCSCEEEETHHHHTTSSE
T ss_pred EEEECCCCCHHHHHHHHHhcChHHHHHHcCCCEEEEchhHhHHHHH
Confidence 9999986544322112223346777788999999999999999875
No 49
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=98.08 E-value=9.5e-06 Score=64.07 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=62.6
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL 89 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 89 (219)
||.|+....+ .....+...|+..|.++.++..+.. ..+.+ ...++|.|
T Consensus 14 ~~~~i~~~~~--~~~~~i~~~l~~~G~~v~v~~~~~~-----------------------------~~~~~-~l~~~Dgl 61 (239)
T 1o1y_A 14 RVLAIRHVEI--EDLGMMEDIFREKNWSFDYLDTPKG-----------------------------EKLER-PLEEYSLV 61 (239)
T ss_dssp EEEEECSSTT--SSCTHHHHHHHHTTCEEEEECGGGT-----------------------------CCCSS-CGGGCSEE
T ss_pred EEEEEECCCC--CCchHHHHHHHhCCCcEEEeCCcCc-----------------------------ccccc-chhcCCEE
Confidence 5555554444 4666788899999988876533210 01111 12479999
Q ss_pred EEcCCCC-ccc---ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 90 VIPGGRA-PEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 90 iipGG~~-~~~---~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|+|||.. +.. .+.-..+.++|+++.++++||.+||.|.++|+.+
T Consensus 62 il~GG~~~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~QlL~~a 109 (239)
T 1o1y_A 62 VLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV 109 (239)
T ss_dssp EECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred EECCCCccccCCccChhHHHHHHHHHHHHHCCCCEEEEchhHHHHHHH
Confidence 9999973 211 1111367899999999999999999999999986
No 50
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=98.05 E-value=1.4e-05 Score=67.21 Aligned_cols=87 Identities=20% Similarity=0.236 Sum_probs=64.7
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
.||+++=+ |+. ......|.++|.++.++..+.. .+++...++|.
T Consensus 191 ~~V~viD~-G~k----~ni~r~L~~~G~~v~vvp~~~~-------------------------------~e~i~~~~~DG 234 (379)
T 1a9x_B 191 FHVVAYDF-GAK----RNILRMLVDRGCRLTIVPAQTS-------------------------------AEDVLKMNPDG 234 (379)
T ss_dssp EEEEEEES-SCC----HHHHHHHHHTTEEEEEEETTCC-------------------------------HHHHHTTCCSE
T ss_pred CEEEEEEC-CCh----HHHHHHHHHCCCEEEEEeccCC-------------------------------HHHHhhcCCCE
Confidence 47777776 554 5578889999998888743311 11111136999
Q ss_pred EEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
||++||++.. ......+++|+++.++++||.+||.|.++|+.+
T Consensus 235 liLsGGPgdp--~~~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A 277 (379)
T 1a9x_B 235 IFLSNGPGDP--APCDYAITAIQKFLETDIPVFGICLGHQLLALA 277 (379)
T ss_dssp EEECCCSBCS--TTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHH
T ss_pred EEEeCCCCCh--HHHHHHHHHHHHHHHcCCCEEEECchHHHHHHH
Confidence 9999998632 235788999999999999999999999999976
No 51
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=97.94 E-value=1.3e-05 Score=63.93 Aligned_cols=49 Identities=35% Similarity=0.626 Sum_probs=38.9
Q ss_pred CccEEEEcCCCC--cccc-------------cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 85 KYDGLVIPGGRA--PEYL-------------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 85 ~~D~liipGG~~--~~~~-------------~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.+|.|+|+||.+ +..+ .++...+++|+++.++++||.+||.|.++|+.+
T Consensus 61 ~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Qll~~a 124 (254)
T 3fij_A 61 LVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVA 124 (254)
T ss_dssp TCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred hCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence 699999999964 1111 112347899999999999999999999999986
No 52
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=97.87 E-value=2.8e-06 Score=66.23 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=53.3
Q ss_pred CEEEEEecC-CCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 9 RSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 9 ~kv~il~~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
+||+|+-+. ++. ..+...|+.+|.++.++..+.. .+++...++|
T Consensus 25 ~~I~iiD~g~~~~----~~i~~~l~~~G~~~~vv~~~~~-------------------------------~~~l~~~~~d 69 (218)
T 2vpi_A 25 GAVVILDAGAQYG----KVIDRRVRELFVQSEIFPLETP-------------------------------AFAIKEQGFR 69 (218)
T ss_dssp TCEEEEECSTTTT----HHHHHHHHHTTCCEEEECTTCC-------------------------------HHHHHHHTCS
T ss_pred CeEEEEECCCchH----HHHHHHHHHCCCEEEEEECCCC-------------------------------hHHHhhcCCC
Confidence 689998654 442 4667889999988888754321 1111113699
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.|++|||.+.......+ .+.++..++++||.+||.|.++|+.+
T Consensus 70 glil~Gg~~~~~~~~~~---~~~~~~~~~~~PilGIC~G~Qll~~~ 112 (218)
T 2vpi_A 70 AIIISGGPNSVYAEDAP---WFDPAIFTIGKPVLGICYGMQMMNKV 112 (218)
T ss_dssp EEEEEC---------CC---CCCGGGGTSSCCEEEETHHHHHHHHH
T ss_pred EEEECCCCcccccccch---hHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence 99999997532101111 12234457899999999999999975
No 53
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=97.77 E-value=5.8e-05 Score=58.39 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=55.7
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
+||.++-+.+-. .......|+++|.++.++..+. ..+++ .++|.
T Consensus 14 ~~i~~id~~~~~---~~~~~~~l~~~G~~~~vv~~~~-------------------------------~~~~l--~~~Dg 57 (212)
T 2a9v_A 14 LKIYVVDNGGQW---THREWRVLRELGVDTKIVPNDI-------------------------------DSSEL--DGLDG 57 (212)
T ss_dssp CBEEEEEESCCT---TCHHHHHHHHTTCBCCEEETTS-------------------------------CGGGG--TTCSE
T ss_pred ceEEEEeCCCcc---HHHHHHHHHHCCCEEEEEeCCC-------------------------------CHHHH--hCCCE
Confidence 477776654322 3456778888898776664321 12222 24999
Q ss_pred EEEcCC-CCccc-ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGG-RAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG-~~~~~-~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|||||| .+... ....+.+.+++ .++++|+.+||.|.++|+.+
T Consensus 58 lIl~GG~p~~~~~~~~~~~l~~~~---~~~~~PiLGIC~G~Qll~~~ 101 (212)
T 2a9v_A 58 LVLSGGAPNIDEELDKLGSVGKYI---DDHNYPILGICVGAQFIALH 101 (212)
T ss_dssp EEEEEECSCGGGTGGGHHHHHHHH---HHCCSCEEEETHHHHHHHHH
T ss_pred EEECCCCCCCCcccccchhHHHHH---HhCCCCEEEEChHHHHHHHH
Confidence 999999 55321 11234444444 47899999999999999976
No 54
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=97.66 E-value=5.4e-05 Score=66.87 Aligned_cols=88 Identities=20% Similarity=0.190 Sum_probs=61.5
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
++|+|+-+. ...+....+.|+++|.++.++.... + .. ...+|.
T Consensus 5 ~~I~Iid~~---~g~~~~~~~~l~~~G~~~~vv~~~~-----------------------------~---~~--l~~~Dg 47 (555)
T 1jvn_A 5 PVVHVIDVE---SGNLQSLTNAIEHLGYEVQLVKSPK-----------------------------D---FN--ISGTSR 47 (555)
T ss_dssp CEEEEECCS---CSCCHHHHHHHHHTTCEEEEESSGG-----------------------------G---CC--STTCSC
T ss_pred CEEEEEECC---CCCHHHHHHHHHHCCCEEEEECCcc-----------------------------c---cc--cccCCE
Confidence 389999764 1234567888999999888764210 0 11 236999
Q ss_pred EEEcCCCCccc-c--cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRAPEY-L--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~~~~-~--~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
||+|||..+.. . ..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus 48 lILpGgG~~~~~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a 95 (555)
T 1jvn_A 48 LILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGIXVGLQALFAG 95 (555)
T ss_dssp EEEEECSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTEEE
T ss_pred EEECCCCchHhHhhhhhhccHHHHHHHHHHcCCcEEEEchhhhhhhhh
Confidence 99998533211 1 112236789999999999999999999999986
No 55
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=97.61 E-value=7.6e-05 Score=61.29 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=60.3
Q ss_pred CEEEEEecCCCCc--------hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccC
Q 027785 9 RSVLLLCGDYMED--------YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDE 80 (219)
Q Consensus 9 ~kv~il~~~g~~~--------~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 80 (219)
..|+|....+... .-.....+.|+++|..+.++.....+ ..+.+
T Consensus 31 P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~----------------------------~~i~~ 82 (315)
T 1l9x_A 31 PIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTE----------------------------KDYEI 82 (315)
T ss_dssp CEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCH----------------------------HHHHH
T ss_pred CEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCCH----------------------------HHHHH
Confidence 4799987643211 11224678889999988887553210 01111
Q ss_pred CCCCCccEEEEcCCCCc-ccc---cCChHHHHHHHHHHhcC--CeEEEEehhHHHHHhC
Q 027785 81 IDPTKYDGLVIPGGRAP-EYL---AMNDSVIDLVRKFSNSG--KTIASICHGQLILAAA 133 (219)
Q Consensus 81 ~~~~~~D~liipGG~~~-~~~---~~~~~l~~~l~~~~~~~--~~v~~ic~G~~~La~a 133 (219)
. ...+|.||+|||.+. ... .....+.++++++.+++ +||.+||.|.++|+.+
T Consensus 83 ~-l~~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a 140 (315)
T 1l9x_A 83 L-FKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL 140 (315)
T ss_dssp H-HHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH
T ss_pred H-HhcCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHH
Confidence 0 136899999999742 110 01135677777776664 9999999999999875
No 56
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=97.60 E-value=7.8e-05 Score=65.49 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=56.6
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
..||+|+=+.. + -...+...++++|..++++..+.. .+++....+|
T Consensus 10 ~~~I~IlD~g~-~--~~~~i~r~lr~~Gv~~~i~p~~~~-------------------------------~~~i~~~~~d 55 (527)
T 3tqi_A 10 QHRILILDFGS-Q--YAQLIARRVREIGVYCELMPCDID-------------------------------EETIRDFNPH 55 (527)
T ss_dssp CSEEEEEECSC-T--THHHHHHHHHHHTCEEEEEETTCC-------------------------------SSSSTTTCCS
T ss_pred CCeEEEEECCC-c--cHHHHHHHHHHCCCeEEEEECCCC-------------------------------HHHHHhcCCC
Confidence 46888886532 2 225667888999988888743321 1122222579
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.||+|||++... ++......+..++.++||.+||.|.++|+.+
T Consensus 56 gIILsGGp~sv~---~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~ 98 (527)
T 3tqi_A 56 GIILSGGPETVT---LSHTLRAPAFIFEIGCPVLGICYGMQTMAYQ 98 (527)
T ss_dssp EEEECCCCC------------CCCSTTTSSSCEEEETHHHHHHHHH
T ss_pred EEEECCcCcccc---cCCChhhHHHHHhcCCCEEEEChHHHHHHHH
Confidence 999999976321 1122233455678899999999999999975
No 57
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.59 E-value=3.4e-05 Score=59.49 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=63.0
Q ss_pred CCEEEEEecCCC--C-chhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCC
Q 027785 8 KRSVLLLCGDYM--E-DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 84 (219)
Q Consensus 8 ~~kv~il~~~g~--~-~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 84 (219)
.+||+|+-+-.- + ..-+......|++.|+++..+..... .++...+.+ .
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~--------------------------~~~~~~~~l--~ 78 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATE--------------------------SLGEITTKL--R 78 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTS--------------------------CHHHHHHHH--H
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC--------------------------ChHHHHHHH--H
Confidence 467887764211 1 12345567788888887776643211 000001112 3
Q ss_pred CccEEEEcCCCCc--ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 85 KYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 85 ~~D~liipGG~~~--~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
+.|.|++|||... ........+.+.|++..++|++++++|.|+.+++..
T Consensus 79 ~ad~I~l~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~~~ 129 (206)
T 3l4e_A 79 KNDFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSPN 129 (206)
T ss_dssp HSSEEEECCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHHHTTSSB
T ss_pred hCCEEEECCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHHHHhccc
Confidence 6899999998642 222345668899999999999999999999999853
No 58
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=97.56 E-value=7.7e-05 Score=60.52 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=39.9
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
++|.||||||++... .+.+.++++++.++++||.+||.|.++|+.+
T Consensus 90 ~~dgiil~GG~~~~~---~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a 135 (289)
T 2v4u_A 90 KADGILVPGGFGIRG---TLGKLQAISWARTKKIPFLGVXLGMQLAVIE 135 (289)
T ss_dssp HCSEEEECSCCSSTT---HHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred hCCEEEecCCCCchh---HHHHHHHHHHHHHcCCcEEEECccHHHHHHH
Confidence 689999999987522 2678899999999999999999999999974
No 59
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=97.53 E-value=0.00024 Score=62.72 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=58.9
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
.||+|+=+-. .-...+...|+..|..++++..+. +++++....+|.
T Consensus 8 ~~IlilD~Gs---~~~~~I~r~lre~Gv~~eiv~~~~-------------------------------~~~~i~~~~~dg 53 (556)
T 3uow_A 8 DKILVLNFGS---QYFHLIVKRLNNIKIFSETKDYGV-------------------------------ELKDIKDMNIKG 53 (556)
T ss_dssp CEEEEEESSC---TTHHHHHHHHHHTTCCEEEEETTC-------------------------------CGGGTTTSCEEE
T ss_pred CEEEEEECCC---ccHHHHHHHHHHCCCeEEEEECCC-------------------------------CHHHHhhcCCCE
Confidence 5787775532 123567788899998888875432 122332237999
Q ss_pred EEEcCCCCcccccCChHHH-HHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 89 LVIPGGRAPEYLAMNDSVI-DLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 89 liipGG~~~~~~~~~~~l~-~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
||+|||++.......+.+. .+++.+.++++||.+||.|.++|+.+
T Consensus 54 IIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~ 99 (556)
T 3uow_A 54 VILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQ 99 (556)
T ss_dssp EEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred EEECCCCCcccccCCcchhHHHHHHhhhcCCCEEEECHHHHHHHHH
Confidence 9999998632211122222 33444566799999999999999975
No 60
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=97.47 E-value=0.00071 Score=60.69 Aligned_cols=89 Identities=20% Similarity=0.293 Sum_probs=61.8
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
.|+|+|+=+- ..=...+...|+..|.++.++..+.. . +..++|
T Consensus 446 Gk~IlviD~g---dsf~~~l~~~l~~~G~~v~Vv~~d~~-------------------------------~---~~~~~D 488 (645)
T 3r75_A 446 GCRALIVDAE---DHFTAMIAQQLSSLGLATEVCGVHDA-------------------------------V---DLARYD 488 (645)
T ss_dssp TCEEEEEESS---CTHHHHHHHHHHHTTCEEEEEETTCC-------------------------------C---CGGGCS
T ss_pred CCEEEEEECC---ccHHHHHHHHHHHCCCEEEEEECCCc-------------------------------c---cccCCC
Confidence 4566665432 12235677888899998888754321 0 123689
Q ss_pred EEEEcCCCCcccccCC---hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 88 GLVIPGGRAPEYLAMN---DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 88 ~liipGG~~~~~~~~~---~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.|||+||.+....... ..+.++|+++.+.++||.+||-|.++|+.+
T Consensus 489 gIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~a 537 (645)
T 3r75_A 489 VVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAI 537 (645)
T ss_dssp EEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred EEEECCCCCChhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHH
Confidence 9999999874321222 246788999999999999999999999975
No 61
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=97.46 E-value=0.00066 Score=55.45 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=42.4
Q ss_pred CccCCCCCCccEEEEcCCCC-c---ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785 77 TFDEIDPTKYDGLVIPGGRA-P---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (219)
Q Consensus 77 ~~~~~~~~~~D~liipGG~~-~---~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~ 132 (219)
++++++...||.+||.|++- . +....-+++.++++...++++++.+||-|+++++.
T Consensus 103 ~f~~~~~~~~DglIITGsP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~ 162 (312)
T 2h2w_A 103 TFSAVKDRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLY 162 (312)
T ss_dssp CGGGTTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHH
T ss_pred CcccccccCcCEEEECCCCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHH
Confidence 35555556899999999973 2 11223367888888888999999999999998444
No 62
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=97.45 E-value=4e-05 Score=60.08 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=39.5
Q ss_pred CccEEEEcCCCCc--ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc
Q 027785 85 KYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (219)
Q Consensus 85 ~~D~liipGG~~~--~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG 134 (219)
+.|.|++|||... ........+.+.|+++.++|++++++|.|+.+|+...
T Consensus 79 ~ad~I~lpGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~~l~~~~ 130 (229)
T 1fy2_A 79 KAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPTI 130 (229)
T ss_dssp HCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred cCCEEEECCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHHHHhhcccc
Confidence 5899999998642 2222334688899999999999999999999998753
No 63
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=97.30 E-value=0.00044 Score=56.26 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=41.1
Q ss_pred ccCCCCCCccEEEEcCCCC-c---ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785 78 FDEIDPTKYDGLVIPGGRA-P---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (219)
Q Consensus 78 ~~~~~~~~~D~liipGG~~-~---~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~ 132 (219)
+++++...||.+||.|++- . +....-+.+.++++...++++++.+||-|+++++.
T Consensus 92 f~~~~~~~~DglIITGap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~ 150 (301)
T 2vdj_A 92 FRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLY 150 (301)
T ss_dssp HHHHTTSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHH
T ss_pred cccccccccCEEEECCCCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHH
Confidence 4444446899999999973 2 11223367888888888999999999999998443
No 64
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=97.28 E-value=0.00026 Score=56.89 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=38.3
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~ 132 (219)
.+|.|++|||++.. ..+...++++++.++++||.+||.|.++|+.
T Consensus 67 ~~dgiil~GG~~~~---~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~ 111 (273)
T 2w7t_A 67 GCDGIFVPGGFGNR---GVDGKCAAAQVARMNNIPYFGVXLGMQVAVI 111 (273)
T ss_dssp TCSEEEECCCCTTT---THHHHHHHHHHHHHHTCCEEEETHHHHHHHH
T ss_pred hCCEEEecCCCCCc---CchhHHHHHHHHHHCCCcEEEECcCHHHHHH
Confidence 68999999997652 2345778999999999999999999999986
No 65
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=97.05 E-value=0.00039 Score=61.03 Aligned_cols=89 Identities=15% Similarity=0.204 Sum_probs=56.9
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
.++|+|+=+.+-. ...+...++.+|..+.++..+.. ...+.+. .+|
T Consensus 7 ~~~IlIlD~g~~~---~~~i~r~lr~~G~~~~i~p~~~~----------------------------~~~i~~~---~~d 52 (525)
T 1gpm_A 7 KHRILILDFGSQY---TQLVARRVRELGVYCELWAWDVT----------------------------EAQIRDF---NPS 52 (525)
T ss_dssp SSEEEEEECSCTT---HHHHHHHHHHTTCEEEEEESCCC----------------------------HHHHHHH---CCS
T ss_pred CCEEEEEECCCcc---HHHHHHHHHHCCCEEEEEECCCC----------------------------HHHHhcc---CCC
Confidence 4688888654322 24567889999988887744321 0112221 479
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.||+|||++.......+.+ .+...+.++||.+||.|.++|+.+
T Consensus 53 giILsGGp~s~~~~~~~~~---~~~~~~~g~PvLGIC~G~Qlla~~ 95 (525)
T 1gpm_A 53 GIILSGGPESTTEENSPRA---PQYVFEAGVPVFGVCYGMQTMAMQ 95 (525)
T ss_dssp EEEECCCSSCTTSTTCCCC---CGGGGTSSSCEEEETHHHHHHHHH
T ss_pred EEEECCcCccccccCCcch---HHHHHHCCCCEEEEChHHHHHHHH
Confidence 9999999753211111212 244557899999999999999975
No 66
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=97.04 E-value=0.0012 Score=49.98 Aligned_cols=91 Identities=16% Similarity=0.092 Sum_probs=52.5
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL 89 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 89 (219)
||+|+=..+. =-......|++.|.++.++...... ..+ ...+.. .+.|.+
T Consensus 2 ~i~iiDn~~s---~~~~i~~~l~~~G~~~~v~~~~~~~----------------------~~i--~~~l~~---~~~~~i 51 (192)
T 1i1q_B 2 DILLLDNIDS---FTWNLADQLRTNGHNVVIYRNHIPA----------------------QTL--IDRLAT---MKNPVL 51 (192)
T ss_dssp EEEEEECSCS---SHHHHHHHHHHTTCEEEEEETTSCS----------------------HHH--HHHHTT---CSSEEE
T ss_pred cEEEEECCcc---HHHHHHHHHHHCCCeEEEEECCCCH----------------------HHH--HHHhhh---ccCCeE
Confidence 6777662221 1245578888999988887554210 000 001111 124447
Q ss_pred EEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
|+.||.+... .......+++ ..++++||.+||.|.++|+.+
T Consensus 52 il~gGpg~~~--~~~~~~~l~~-~~~~~~PilGIC~G~Qll~~~ 92 (192)
T 1i1q_B 52 MLSPGPGVPS--EAGCMPELLT-RLRGKLPIIGICLGHQAIVEA 92 (192)
T ss_dssp EECCCSSCGG--GSTTHHHHHH-HHBTTBCEEEETHHHHHHHHH
T ss_pred EECCCCcCch--hCchHHHHHH-HHhcCCCEEEECcChHHHHHH
Confidence 7777776421 1222334444 467899999999999999986
No 67
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=96.84 E-value=0.0014 Score=56.87 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=41.0
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
...+|.|++|||++.. ..+...++|+.+.++++|+.+||.|.++|+.+
T Consensus 348 L~~~DgIIlpGG~G~~---~~~g~i~~ir~a~~~~~PiLGIClG~Qll~va 395 (535)
T 3nva_A 348 LGNVNGIIVLPGFGSR---GAEGKIKAIKYAREHNIPFLGICFGFQLSIVE 395 (535)
T ss_dssp TTSCSEEEECCCCSST---THHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred ccCCCEEEECCCCCCc---cHHHHHHHHHHHHHcCCcEEEECcchhHHHHH
Confidence 3589999999998753 34678899999999999999999999988865
No 68
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=96.54 E-value=0.0032 Score=55.21 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=39.7
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
..+|.|++|||++... .+...++++++.++++|+.+||.|.++|+.+
T Consensus 342 ~~~DGIilsGGpg~~~---~~g~~~~i~~a~~~~~PiLGIClG~Qll~va 388 (545)
T 1s1m_A 342 KGLDAILVPGGFGYRG---VEGMITTARFARENNIPYLGICLGMQVALID 388 (545)
T ss_dssp TTCSEEEECCCCSSTT---HHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred hcCCEEEECCCCCCcc---chhhHHHHHHHHHCCCcEEEECChHHHHHHH
Confidence 4799999999987532 3567889999999999999999999999864
No 69
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=96.51 E-value=0.0028 Score=55.65 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=39.4
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
..+|.|++|||+|... .+..+..++.+.++++|+.+||-|.++|+.+
T Consensus 354 ~~~DGIILpGGfGd~~---~~g~i~~ir~a~e~~iPiLGICLGmQlL~~a 400 (550)
T 1vco_A 354 RDVSGILVPGGFGVRG---IEGKVRAAQYARERKIPYLGICLGLQIAVIE 400 (550)
T ss_dssp TTCSCEEECCCCSSTT---HHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred hcCCEEEECCCCCCcc---hhhhHHHHHHHHHCCCcEEEECcCHHHHHHH
Confidence 4799999999987432 2456788999988999999999999999876
No 70
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=96.34 E-value=0.0024 Score=55.68 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785 25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND 104 (219)
Q Consensus 25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~ 104 (219)
..+...++++|..+.++..+.. ...+.+. .+|.||+|||++...-...+
T Consensus 13 ~~i~r~l~~~G~~~~i~p~~~~----------------------------~~~i~~~---~~dgiIlsGGp~s~~~~~~~ 61 (503)
T 2ywb_A 13 RLIARRLRELRAFSLILPGDAP----------------------------LEEVLKH---RPQALILSGGPRSVFDPDAP 61 (503)
T ss_dssp HHHHHHHHTTTCCEEEEETTCC----------------------------HHHHHTT---CCSEEEECCCSSCSSCTTCC
T ss_pred HHHHHHHHHCCCEEEEEECCCC----------------------------HHHHHhc---CCCEEEECCCCchhccCCCc
Confidence 5678889999988777643311 0112222 47999999997632111111
Q ss_pred HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 105 SVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.+ .+...+.++||.+||.|.++|+.+
T Consensus 62 ~~---~~~~~~~~~PvLGIC~G~Qlla~~ 87 (503)
T 2ywb_A 62 RP---DPRLFSSGLPLLGICYGMQLLAQE 87 (503)
T ss_dssp CC---CGGGGCSSCCEEEETHHHHHHHHT
T ss_pred ch---HHHHHhCCCCEEEECHHHHHHHHH
Confidence 11 134457899999999999999986
No 71
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=95.97 E-value=0.0019 Score=58.39 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=53.5
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
..+|+|+-+.+-. .+ .+...+++.|..+.++..+.. .+++...++|
T Consensus 29 ~~~I~VLDfg~q~-~~--liar~lre~Gv~~~ivp~~~~-------------------------------~e~i~~~~~d 74 (697)
T 2vxo_A 29 EGAVVILDAGAQY-GK--VIDRRVRELFVQSEIFPLETP-------------------------------AFAIKEQGFR 74 (697)
T ss_dssp CCCEEEEEEC--C-HH--HHHHHHHHTTCCEEEEETTCC-------------------------------HHHHHHHTCS
T ss_pred CCEEEEEECCCch-HH--HHHHHHHHCCCEEEEEECCCC-------------------------------HHHHhhcCCC
Confidence 3578888765422 12 355788899988887754321 1111113689
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a 133 (219)
.||++||++...-...+.+ .++..+.++||.+||.|.++|+.+
T Consensus 75 GIILsGGp~s~~~~~~~~~---~~~i~~~g~PvLGIC~G~QlLa~~ 117 (697)
T 2vxo_A 75 AIIISGGPNSVYAEDAPWF---DPAIFTIGKPVLGICYGMQMMNKV 117 (697)
T ss_dssp EEEEEECC-------CCCC---CGGGTTSSCCEEEEEHHHHHHHHH
T ss_pred EEEECCCCCcccCccchhH---HHHHHhCCCCEEEECHHHHHHHHH
Confidence 9999999863211111111 133457899999999999999985
No 72
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=95.63 E-value=0.0074 Score=48.77 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=39.6
Q ss_pred CccEEEEcCCCCcc--cccCChHHHHHHHHHHhcC-CeEEEEehhHHHHHh
Q 027785 85 KYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAA 132 (219)
Q Consensus 85 ~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~~-~~v~~ic~G~~~La~ 132 (219)
+.|+|+|+||.... .......+.+.|++.+++| .++++.|+|+.+++.
T Consensus 110 ~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 110 QCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGAAVMGH 160 (291)
T ss_dssp HCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred cCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence 68999999997532 2345678999999999999 899999999998754
No 73
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=91.24 E-value=0.96 Score=35.70 Aligned_cols=83 Identities=13% Similarity=0.029 Sum_probs=53.5
Q ss_pred CCEEEEEecCCCC-chhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 8 KRSVLLLCGDYME-DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 8 ~~kv~il~~~g~~-~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
++||+|+- |.. ..+...+.+.|+..|++|++++.+.-+ .+..+ ..+|
T Consensus 4 m~~vLiV~--g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~----------------------------~~~~~--L~~y 51 (259)
T 3rht_A 4 MTRVLYCG--DTSLETAAGYLAGLMTSWQWEFDYIPSHVGL----------------------------DVGEL--LAKQ 51 (259)
T ss_dssp --CEEEEE--SSCTTTTHHHHHHHHHHTTCCCEEECTTSCB----------------------------CSSHH--HHTC
T ss_pred CceEEEEC--CCCchhHHHHHHHHHHhCCceEEEecccccc----------------------------cChhH--HhcC
Confidence 35898883 332 345566778999999999998775321 01122 2489
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
|+||++-- ... .-.+...+.|+++.++|.-++.+..
T Consensus 52 DvIIl~d~-~~~--~l~~~~~~~L~~yV~~GGgLi~~gG 87 (259)
T 3rht_A 52 DLVILSDY-PAE--RMTAQAIDQLVTMVKAGCGLVMLGG 87 (259)
T ss_dssp SEEEEESC-CGG--GBCHHHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEcCC-ccc--cCCHHHHHHHHHHHHhCCeEEEecC
Confidence 99999742 221 2356777788888888887776644
No 74
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=88.09 E-value=2.1 Score=38.39 Aligned_cols=89 Identities=12% Similarity=0.057 Sum_probs=62.5
Q ss_pred CCEEEEEecCC------CCch----------hhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCc
Q 027785 8 KRSVLLLCGDY------MEDY----------EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHN 71 (219)
Q Consensus 8 ~~kv~il~~~g------~~~~----------e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 71 (219)
+.|||||-..| .... ...++++.|..++++|++++-+.
T Consensus 438 ~~kVAVLnsWGklRSW~~~~vaHak~~kq~ysy~GilEALsg~~~dV~FIsfdD-------------------------- 491 (759)
T 2zuv_A 438 ELNVAILNSWGKMRSWMAFTVAHALPNKQTYSYYGILESLSGMRVNVRFISFDD-------------------------- 491 (759)
T ss_dssp CSEEEEEESSGGGGTTTTTCSSTTCCCTTTHHHHHHHHHHHTSSSEEEEEEHHH--------------------------
T ss_pred CceEEEEecCCCCcccccccccccccccccccHHHHHHHHhcCCCceEEecHHH--------------------------
Confidence 47999998642 1122 55779999999999999997642
Q ss_pred cccccCccCCCCCCccEEEEcCCCC----cccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 72 FALNATFDEIDPTKYDGLVIPGGRA----PEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 72 i~~~~~~~~~~~~~~D~liipGG~~----~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
+... + .+.+||+||-+|-.+ ......++.....||++..+|.-+.+++.=+
T Consensus 492 I~e~----e-~L~d~DVIIn~G~A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgVGepS 546 (759)
T 2zuv_A 492 VLAH----G-IDSDIDVIINGGPVDTAFTGGDVWTNPKLVETVRAWVRGGGAFVGVGEPS 546 (759)
T ss_dssp HHHH----C-CCTTCCEEEEEECTTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEEESTT
T ss_pred hccc----c-ccccCCEEEecCcchhcccCccccCCHHHHHHHHHHHHcCCcEEEeCCcc
Confidence 1001 1 135899999988221 1122446999999999999999888887644
No 75
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=86.55 E-value=11 Score=29.97 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=53.4
Q ss_pred CCEEEEEecCCCCchh--hHHHHHHHHhCC-CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCC
Q 027785 8 KRSVLLLCGDYMEDYE--AMVPFQALLAFG-VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 84 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e--~~~~~~~l~~ag-~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 84 (219)
+.||+|+.-...-..+ ...+.+.|++.| |+|++......+.+ ...|.. +..
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d-------------------------~~~f~~-~L~ 57 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKD-------------------------MSGFVL-DFS 57 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSC-------------------------CTTCCC-CCT
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccc-------------------------hhHHhh-hhh
Confidence 4678887543322111 134455666677 99988754321000 011221 345
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
+||+||+-- .+. .-.+...+-|+++.++|..++++.+++.
T Consensus 58 ~~D~vV~~~-~~~---~l~~~~~~~l~~yV~~Ggglv~~H~a~~ 97 (281)
T 4e5v_A 58 PYQLVVLDY-NGD---SWPEETNRRFLEYVQNGGGVVIYHAADN 97 (281)
T ss_dssp TCSEEEECC-CSS---CCCHHHHHHHHHHHHTTCEEEEEGGGGG
T ss_pred cCCEEEEeC-CCC---cCCHHHHHHHHHHHHcCCCEEEEecccc
Confidence 899999633 221 1356777788888889999999988653
No 76
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=79.41 E-value=0.78 Score=33.09 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=38.4
Q ss_pred CCccEEEEcCCCCcccc-cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCccc
Q 027785 84 TKYDGLVIPGGRAPEYL-AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV 136 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~-~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL 136 (219)
.+.|+|++-||...... ...+.+.+.|.+..+.++-|.++|-=. ++.++|..
T Consensus 83 ~~~D~vVllGGLAMPk~~v~~e~v~~li~ki~~~~~kiiGvCFms-~F~kagW~ 135 (157)
T 2r47_A 83 GNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCYMD-MFARAGWY 135 (157)
T ss_dssp CCEEEEEEEGGGGSTTTSCCHHHHHHHHHHHEEEEEEEEEEEETT-HHHHTTHH
T ss_pred CCCCEEEEeccccCCCCCCCHHHHHHHHHHhhcCCCCEEEEEhHH-HHHHcCCC
Confidence 37999999999864332 334678888888876677799999844 67777643
No 77
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=78.75 E-value=3.8 Score=33.26 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=25.0
Q ss_pred CCEEEEEecCCCCc----hhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYMED----YEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~~----~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
++|++|++-+..-. .-+..+...|+.+|+++.+....
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~ 64 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATE 64 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECC
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEec
Confidence 46899888764321 22456778888899888776544
No 78
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=78.30 E-value=7 Score=31.34 Aligned_cols=103 Identities=13% Similarity=0.126 Sum_probs=47.7
Q ss_pred CEEEEEecCCCCc--hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 9 RSVLLLCGDYMED--YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 9 ~kv~il~~~g~~~--~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
+||+|+.-+.-.. .-+....+.|++.|+++.+........... .... + ... ..|..+.. ..-......++
T Consensus 5 ~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~--~~~~-~---~~~-~~g~~~~~-~~~~~~~~~~~ 76 (307)
T 1u0t_A 5 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSL--HLAP-D---DMR-AMGVEIEV-VDADQHAADGC 76 (307)
T ss_dssp CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-------------------------------------------C
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcc--cccc-c---ccc-cccccccc-cccccccccCC
Confidence 6899988764321 235567778888999887754432100000 0000 0 000 00100100 00011123478
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
|++++.||.|. ++.-++.+...+.|+.+|-.|.
T Consensus 77 d~vi~~GGDGT--------~l~a~~~~~~~~~pvlgi~~G~ 109 (307)
T 1u0t_A 77 ELVLVLGGDGT--------FLRAAELARNASIPVLGVNLGR 109 (307)
T ss_dssp CCEEEEECHHH--------HHHHHHHHHHHTCCEEEEECSS
T ss_pred CEEEEEeCCHH--------HHHHHHHhccCCCCEEEEeCCC
Confidence 99999998653 4444455555578888887664
No 79
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*
Probab=75.65 E-value=9.8 Score=34.17 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=45.5
Q ss_pred hhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccC
Q 027785 23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAM 102 (219)
Q Consensus 23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~ 102 (219)
++...+..|...|+.+++++++. +...|++||+|.-. .-
T Consensus 426 ~~~~~y~aL~~~gi~vD~v~~~~------------------------------------dL~~Yklvv~P~~~-----~~ 464 (675)
T 3tty_A 426 EVHKYYDALYKQNIQTDMISVEE------------------------------------DLSKYKVVIAPVMY-----MV 464 (675)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTS------------------------------------CCTTCSEEEETTCC-----BC
T ss_pred HHHHHHHHHHHcCceEEEecCcC------------------------------------CcccCCEEEEeccE-----ec
Confidence 56788999999999999997642 12479999999743 23
Q ss_pred ChHHHHHHHHHHhcCCeEEEEe
Q 027785 103 NDSVIDLVRKFSNSGKTIASIC 124 (219)
Q Consensus 103 ~~~l~~~l~~~~~~~~~v~~ic 124 (219)
++.+.+.|+++.++|..+...+
T Consensus 465 ~~~~~~~L~~yV~~GG~lv~t~ 486 (675)
T 3tty_A 465 KPGFAERVERFVAQGGTFVTTF 486 (675)
T ss_dssp CTTHHHHHHHHHHTTCEEEEET
T ss_pred CHHHHHHHHHHHhcCCEEEEEc
Confidence 5778888888888776655443
No 80
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=71.79 E-value=4.6 Score=32.31 Aligned_cols=37 Identities=14% Similarity=-0.035 Sum_probs=24.8
Q ss_pred CCEEEEEecCCCCc----hhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYMED----YEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~~----~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
++|+.|++.|..-. .-+..+...|+.++.++++....
T Consensus 8 m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~ 48 (304)
T 3s40_A 8 FEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTK 48 (304)
T ss_dssp CSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECC
T ss_pred CCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEcc
Confidence 57899998773211 22345677788889888876544
No 81
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=71.74 E-value=7.3 Score=30.96 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=45.4
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
.+||+|+.-++-. .....+.|++.|+++.+...... .+ .+.|
T Consensus 29 ~mki~iv~~~~~~---~~~l~~~L~~~g~~v~~~~~~~~------------------------------~~-----~~~D 70 (278)
T 1z0s_A 29 GMRAAVVYKTDGH---VKRIEEALKRLEVEVELFNQPSE------------------------------EL-----ENFD 70 (278)
T ss_dssp -CEEEEEESSSTT---HHHHHHHHHHTTCEEEEESSCCG------------------------------GG-----GGSS
T ss_pred ceEEEEEeCCcHH---HHHHHHHHHHCCCEEEEcccccc------------------------------cc-----CCCC
Confidence 3578888766544 66778889999998866432110 01 2578
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
++|+.||.|. ++.-.+.+... .||.+|-.|.
T Consensus 71 lvIvlGGDGT--------~L~aa~~~~~~-~PilGIN~G~ 101 (278)
T 1z0s_A 71 FIVSVGGDGT--------ILRILQKLKRC-PPIFGINTGR 101 (278)
T ss_dssp EEEEEECHHH--------HHHHHTTCSSC-CCEEEEECSS
T ss_pred EEEEECCCHH--------HHHHHHHhCCC-CcEEEECCCC
Confidence 8888888653 23333333334 7888887764
No 82
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=70.09 E-value=13 Score=25.73 Aligned_cols=84 Identities=20% Similarity=0.299 Sum_probs=46.4
Q ss_pred CEEEEEecCCCCchh--hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCC-C
Q 027785 9 RSVLLLCGDYMEDYE--AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT-K 85 (219)
Q Consensus 9 ~kv~il~~~g~~~~e--~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-~ 85 (219)
+||.|+-+...--.+ .-.+.+.+...|++++++..... ..++ .. +
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~------------------------------~~~~--l~~~ 49 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADA------------------------------SAEN--LADG 49 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTB------------------------------CCTT--TTTT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhC------------------------------CHhH--hccc
Confidence 478777765332222 22234556667888888765431 0111 23 6
Q ss_pred ccEEEEcCCC-Cc--ccccCChHHHHHHHHHHh---cCCeEEEEehh
Q 027785 86 YDGLVIPGGR-AP--EYLAMNDSVIDLVRKFSN---SGKTIASICHG 126 (219)
Q Consensus 86 ~D~liipGG~-~~--~~~~~~~~l~~~l~~~~~---~~~~v~~ic~G 126 (219)
+|.+++.... +. .. ..+.+.+|+.+... +++.++.++.|
T Consensus 50 ~d~ii~g~pty~~~~G~--~p~~~~~fl~~l~~~~l~~k~~~vfg~G 94 (148)
T 3f6r_A 50 YDAVLFGCSAWGMEDLE--MQDDFLSLFEEFDRIGLAGRKVAAFASG 94 (148)
T ss_dssp CSEEEEEECEECSSSCE--ECHHHHHHHTTGGGTCCTTCEEEEEEEE
T ss_pred CCEEEEEecccCCCCCC--CcHHHHHHHHHhhccCCCCCEEEEEEeC
Confidence 8988875431 21 11 24567777776543 57777777665
No 83
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=69.46 E-value=12 Score=29.09 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=45.8
Q ss_pred HHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCChHH
Q 027785 27 PFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSV 106 (219)
Q Consensus 27 ~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~~l 106 (219)
+.+.|+..||+|++++.+.. ...++.-...+||+||+-|-.... ..++..
T Consensus 37 i~~~L~~~gf~V~~~t~dd~----------------------------~~~~~~~~L~~~DvvV~~~~~~~~--~l~~~~ 86 (252)
T 1t0b_A 37 IASYLAEAGFDAATAVLDEP----------------------------EHGLTDEVLDRCDVLVWWGHIAHD--EVKDEV 86 (252)
T ss_dssp HHHHHHHTTCEEEEEESSSG----------------------------GGGCCHHHHHTCSEEEEECSSCGG--GSCHHH
T ss_pred HHHHHhhCCcEEEEEeccCc----------------------------cccCCHhHHhcCCEEEEecCCCCC--cCCHHH
Confidence 47888889999998763321 000111113479999985421111 235677
Q ss_pred HHHHHHHHhcCCeEEEEehhH
Q 027785 107 IDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 107 ~~~l~~~~~~~~~v~~ic~G~ 127 (219)
.+-|+++.++|+-++++-.|.
T Consensus 87 ~~al~~~V~~GgG~vgiH~a~ 107 (252)
T 1t0b_A 87 VERVHRRVLEGMGLIVLHSGH 107 (252)
T ss_dssp HHHHHHHHHTTCEEEEEGGGG
T ss_pred HHHHHHHHHcCCCEEEEcccC
Confidence 778888889999999997774
No 84
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=68.44 E-value=17 Score=27.95 Aligned_cols=59 Identities=22% Similarity=0.460 Sum_probs=43.7
Q ss_pred EEEEEecC----CCC---chhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCC
Q 027785 10 SVLLLCGD----YME---DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID 82 (219)
Q Consensus 10 kv~il~~~----g~~---~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 82 (219)
||+|+-.. ||. .+|-..+.+.+..-|.+|+++|...+ .+ ..++++++
T Consensus 2 kiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~vd~is~k~~----------------iy----------~~~fd~vd 55 (351)
T 1jg7_A 2 KIAIINMGNNVINFKTVPSSETIYLFKVISEMGLNVDIISLKNG----------------VY----------TKSFDEVD 55 (351)
T ss_dssp CEEEEESSSCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEESSCC----------------SS----------EEEGGGSC
T ss_pred ceEEEecCCccccceecCccceeeHHHHHHHcCCCeeEEEeccc----------------ee----------eeecccCC
Confidence 68888752 332 36777788899999999999998754 11 23578888
Q ss_pred CCCccEEEEcCC
Q 027785 83 PTKYDGLVIPGG 94 (219)
Q Consensus 83 ~~~~D~liipGG 94 (219)
+.+||-++|...
T Consensus 56 ~n~ydr~~vvn~ 67 (351)
T 1jg7_A 56 VNDYDRLIVVNS 67 (351)
T ss_dssp GGGCSEEEEECC
T ss_pred ccccceEEEEec
Confidence 889999888754
No 85
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=65.81 E-value=11 Score=27.55 Aligned_cols=103 Identities=17% Similarity=0.087 Sum_probs=49.4
Q ss_pred CEEEEEecCCCCch--hhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 9 RSVLLLCGDYMEDY--EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 9 ~kv~il~~~g~~~~--e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
+||+|+.+....-. =.-.+.+.+...|.+++++...... .++.... ... .. ...+....+++ .++
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~-~~~~~~~-------~~~-~~--~~~~~~~~~~l--~~a 72 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVS-TECEAVA-------PDI-PA--EGALYATLEDL--KNC 72 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEE-C-----------------------CCBCCHHHH--HTC
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhcc-chhhhhc-------ccc-cc--ccCchhhHHHH--HHC
Confidence 58988886532221 2223445566678899888765421 1000000 000 00 00111112222 478
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHh-------cCCeEEEEehh
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSN-------SGKTIASICHG 126 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~-------~~~~v~~ic~G 126 (219)
|+||+..-.-. ..-.+.+..||.+... ++|+++.++++
T Consensus 73 D~ii~gsP~y~--~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~ 117 (200)
T 2a5l_A 73 AGLALGSPTRF--GNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTST 117 (200)
T ss_dssp SEEEEEEECBT--TBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEB
T ss_pred CEEEEEcChhc--cCccHHHHHHHHHHHHHhhccccCCCEEEEEEec
Confidence 99988432111 1235667777776543 57777766654
No 86
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=62.21 E-value=5.9 Score=32.10 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=23.9
Q ss_pred CEEEEEecCCCCc-hhhHHHHHHHHhCCCeEEEecCC
Q 027785 9 RSVLLLCGDYMED-YEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 9 ~kv~il~~~g~~~-~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+|++|++.+..-. ..+......|+++|+++.+....
T Consensus 30 ~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~ 66 (332)
T 2bon_A 30 PASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTW 66 (332)
T ss_dssp CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECC
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEec
Confidence 5798888763321 23456677888899888776443
No 87
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=62.07 E-value=6.6 Score=31.08 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=48.5
Q ss_pred CEEEEEecCCCC--chhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785 9 RSVLLLCGDYME--DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY 86 (219)
Q Consensus 9 ~kv~il~~~g~~--~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 86 (219)
|||+|+.-++-. ...+....+.|++.|+++.+...... .. ...+.... ..... ..++
T Consensus 6 kki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~----------------~~-~~~~~~~~---~~~~~-~~~~ 64 (292)
T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAH----------------EL-QLKNVPTG---TLAEI-GQQA 64 (292)
T ss_dssp CEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHH----------------HT-TCSSCCEE---CHHHH-HHHC
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh----------------hc-cccccccc---chhhc-ccCC
Confidence 689999876421 12355677888899998876532210 00 00000000 00111 1358
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
|++|+.||.| .+..-++.+...+.|+.+|-.|.
T Consensus 65 D~vi~~GGDG--------T~l~a~~~~~~~~~P~lGI~~Gt 97 (292)
T 2an1_A 65 DLAVVVGGDG--------NMLGAARTLARYDINVIGINRGN 97 (292)
T ss_dssp SEEEECSCHH--------HHHHHHHHHTTSSCEEEEBCSSS
T ss_pred CEEEEEcCcH--------HHHHHHHHhhcCCCCEEEEECCC
Confidence 9999999865 34445555555678888886554
No 88
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=59.00 E-value=9.8 Score=29.82 Aligned_cols=37 Identities=8% Similarity=-0.011 Sum_probs=27.3
Q ss_pred CCEEEEEecC---CCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+++|++++.+ .|...-+.++.+.+++.|+++.+....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 41 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSAN 41 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECT
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 4689999874 455555667778888899999887654
No 89
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=58.77 E-value=13 Score=28.51 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=26.0
Q ss_pred CCEEEEEecCCCCc---hhhHHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCGDYMED---YEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~~g~~~---~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
+++|++++.+-.+. .-+.++.+.+++.|+++.+.....
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 45 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGR 45 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 67999999753322 234566677778899998876543
No 90
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=57.74 E-value=12 Score=29.16 Aligned_cols=77 Identities=19% Similarity=0.306 Sum_probs=46.7
Q ss_pred hhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccc--
Q 027785 23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL-- 100 (219)
Q Consensus 23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~-- 100 (219)
+...+.+.|+.++++++++.....+ .. + +.+.++ ..+||+||+.+.......
T Consensus 41 ~~~~l~~aL~~~~~~v~~~~~~~~~--------------------~~--f--p~~~~~--L~~yDvIIl~~~~~~~l~~~ 94 (256)
T 2gk3_A 41 GATWLLECLRKGGVDIDYMPAHTVQ--------------------IA--F--PESIDE--LNRYDVIVISDIGSNTFLLQ 94 (256)
T ss_dssp SCHHHHHHHHHTTCEEEEECHHHHH--------------------HC--C--CCSHHH--HHTCSEEEEESCCHHHHHSC
T ss_pred cHHHHHHHHHhcCceEEEEecccch--------------------hh--C--CcChhH--HhcCCEEEEeCCchhhcccc
Confidence 5567888999999999988543110 00 0 001122 247999999864321100
Q ss_pred -------cCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 101 -------AMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 101 -------~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
...+...+.|+++.++|.-+..+..
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~V~~GGgll~igG 126 (256)
T 2gk3_A 95 NETFYQLKIKPNALESIKEYVKNGGGLLMIGG 126 (256)
T ss_dssp HHHHTTCCCCCCHHHHHHHHHHTTCEEEEECS
T ss_pred cccccccccChHHHHHHHHHHHhCCEEEEECC
Confidence 1115567888888888988888843
No 91
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=56.62 E-value=26 Score=25.39 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=47.7
Q ss_pred CEEEEEecCCCCchh--hHHHHHHHHh-CCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785 9 RSVLLLCGDYMEDYE--AMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 85 (219)
Q Consensus 9 ~kv~il~~~g~~~~e--~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 85 (219)
+||+|+.+....-.+ .-.+.+.+.. .|.+++++..... ..+++ .+
T Consensus 5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~------------------------------~~~~l--~~ 52 (188)
T 2ark_A 5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEA------------------------------TKEDV--LW 52 (188)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTC------------------------------CHHHH--HH
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhC------------------------------CHHHH--Hh
Confidence 588888765332222 2223455555 7778877755421 02222 36
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHh------cCCeEEEEeh
Q 027785 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSN------SGKTIASICH 125 (219)
Q Consensus 86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~------~~~~v~~ic~ 125 (219)
+|.|++....- ...-.+.+..||.+... ++|+++.+++
T Consensus 53 aD~ii~gsP~y--~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t 96 (188)
T 2ark_A 53 ADGLAVGSPTN--MGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSS 96 (188)
T ss_dssp CSEEEEEEECB--TTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEE
T ss_pred CCEEEEEeCcc--CCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEE
Confidence 89998843211 11235678888888765 5777776666
No 92
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=56.06 E-value=11 Score=26.94 Aligned_cols=35 Identities=23% Similarity=0.084 Sum_probs=20.1
Q ss_pred EEEEEecCCC--CchhhHHHHHHHHhCCCeEEEecCC
Q 027785 10 SVLLLCGDYM--EDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 10 kv~il~~~g~--~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
||.|+-+... ...=.-.+.+.+...|.+++++...
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 38 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLR 38 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 5766665433 2222233556677778888777554
No 93
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=52.80 E-value=14 Score=28.77 Aligned_cols=101 Identities=14% Similarity=0.056 Sum_probs=52.2
Q ss_pred CCCCCCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCC
Q 027785 4 SKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP 83 (219)
Q Consensus 4 ~~~~~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 83 (219)
|.|..++|+|--... ......+.|++.|+++..+..-. +. +.... ..+ +..+.+ .
T Consensus 10 ~~~~g~~IlvTRp~~----~a~~l~~~L~~~G~~~~~~P~i~---------i~------~~~~~--~~l--~~~l~~--l 64 (269)
T 3re1_A 10 MDMSAWRLLLTRPAE----ESAALARVLADAGIFSSSLPLLE---------TE------PLPLT--PAQ--RSIIFE--L 64 (269)
T ss_dssp ---CCCEEEECSCHH----HHHHHHHHHHTTTCEEEECCCCE---------EE------ECCCH--HHH--HHHHHT--G
T ss_pred cccCCCEEEEeCChH----HHHHHHHHHHHCCCCEEEcCCEE---------Ee------cCCCc--HHH--HHHHHh--c
Confidence 455578887665443 45677888999999876652210 00 00000 000 011222 2
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHh--cCCeEEEEehhHH-HHHhCcc
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHGQL-ILAAADV 135 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~--~~~~v~~ic~G~~-~La~aGl 135 (219)
.+||+||+....+... +.+.+++... +...+++|+.++. .|.+.|+
T Consensus 65 ~~~d~vifTS~naV~~------~~~~l~~~~~~~~~~~i~aVG~~Ta~aL~~~G~ 113 (269)
T 3re1_A 65 LNYSAVIVVSKPAARL------AIELIDEVWPQPPMQPWFSVGSATGQILLDYGL 113 (269)
T ss_dssp GGSSEEEECSHHHHHH------HHHHHHHHCSSCCCSCEEESSHHHHHHHHHTTC
T ss_pred cCCCEEEEECHHHHHH------HHHHHHHhCCCcccCEEEEECHHHHHHHHHcCC
Confidence 4799999987655432 2233333211 1356788887764 6666664
No 94
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=50.49 E-value=94 Score=24.77 Aligned_cols=126 Identities=11% Similarity=-0.023 Sum_probs=65.8
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
++|.|++.+|-+.-+-......|...|++|.++-+........ ... .. ......|..+.+.. ..+....+|+
T Consensus 133 ~~vlVlcG~GNNGGDGlv~AR~L~~~G~~V~V~~~~~~~~~~~-a~~----~~-~~~~~~g~~~~~~~--~~l~~~~~dl 204 (306)
T 3d3j_A 133 PTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLES-ITN----EL-SLFSKTQGQQVSSL--KDLPTSPVDL 204 (306)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCCCSSCCHH-HHH----HH-HHHHTSSCEEESCS--TTSCSSCCSE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCcEEEEEecCCCCCHH-HHH----HH-HHHHHcCCccccch--hhhccCCCCE
Confidence 5899999999999999999999999999999986652110000 000 00 00001122222111 1111023455
Q ss_pred EEEcCCCCcc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEee
Q 027785 89 LVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTA 143 (219)
Q Consensus 89 liipGG~~~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~ 143 (219)
||=.=|.|-. .++..+.+.++|+...+.+.+|.||-.=+-+ ....+-...++|-
T Consensus 205 IIDALG~G~~~~l~~~~~~~~lI~~iN~~~~~VvAVDiPSGl-~~~av~Ad~TvTf 259 (306)
T 3d3j_A 205 VINCLDCPENVFLRDQPWYKAAVAWANQNRAPVLSIDPPVHE-VEQGIDAKWSLAL 259 (306)
T ss_dssp EEEECCCTTCGGGGGCHHHHHHHHHHHHSCCCEEEESCCCC------CCCSEEEEE
T ss_pred EEECCCCCCCCccCcchHHHHHHHHHHhcCCCEEEEECCCCC-CCCceecCEEEEc
Confidence 4422133322 2221357777777777788999998764433 1123334444443
No 95
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*
Probab=50.10 E-value=28 Score=30.87 Aligned_cols=62 Identities=21% Similarity=0.346 Sum_probs=45.4
Q ss_pred hhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccC
Q 027785 23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAM 102 (219)
Q Consensus 23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~ 102 (219)
++...+..|...|+.+++++++. +...|++||+|.-.. -
T Consensus 426 ~~~~~y~al~~~g~~vd~v~~~~------------------------------------~l~~y~lvv~P~~~~-----~ 464 (645)
T 1kwg_A 426 LVYLFYSALRRLGLDVDVVPPGA------------------------------------SLRGYAFAVVPSLPI-----V 464 (645)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTS------------------------------------CCTTCSEEEESCCSS-----C
T ss_pred HHHHHHHHHHHhCCCeeEECCCC------------------------------------CcccCCEEEEechhh-----c
Confidence 46678889999999999997642 124799999998532 3
Q ss_pred ChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 103 NDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 103 ~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
++.+.+.|++ +.|..|++-.+|.
T Consensus 465 ~~~~~~~L~~--~GG~lv~~~~sg~ 487 (645)
T 1kwg_A 465 REEALEAFRE--AEGPVLFGPRSGS 487 (645)
T ss_dssp CHHHHHHHHT--CSSCEEECTTTTC
T ss_pred CHHHHHHHHh--CCCEEEEeccCCc
Confidence 5778888877 6677777666664
No 96
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=49.41 E-value=36 Score=24.03 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=46.4
Q ss_pred CCEEEEEecCCC--CchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785 8 KRSVLLLCGDYM--EDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 85 (219)
Q Consensus 8 ~~kv~il~~~g~--~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 85 (219)
.+||.|+-+... ...=.-.+.+.+...|.+++++.....+ ..+..+.++ .+
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~-------------------------~~~~~~~~~--~~ 56 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAV-------------------------DLQELRELV--GR 56 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCC-------------------------CHHHHHHHH--HT
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcC-------------------------CHHHHHHHH--Hh
Confidence 357887776433 2222234566677788888877554210 000011122 36
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
||.|++....-...++ ...+++.+....-.+++++.++++
T Consensus 57 ~d~ii~Gspty~g~~p-~~~~l~~l~~~~~~~k~va~fgs~ 96 (159)
T 3fni_A 57 CTGLVIGMSPAASAAS-IQGALSTILGSVNEKQAVGIFETG 96 (159)
T ss_dssp EEEEEEECCBTTSHHH-HHHHHHHHHHHCCTTSEEEEECCS
T ss_pred CCEEEEEcCcCCCCcc-HHHHHHHHHhhcccCCEEEEEEcC
Confidence 9999885432111122 123333333333368888888865
No 97
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=48.40 E-value=23 Score=24.03 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=25.2
Q ss_pred CCccEEEEcCCC-CcccccCChHHHHHHHHHHh--cCCeEEEEehh
Q 027785 84 TKYDGLVIPGGR-APEYLAMNDSVIDLVRKFSN--SGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~-~~~~~~~~~~l~~~l~~~~~--~~~~v~~ic~G 126 (219)
.++|.|++.... +....+ +..+.+|+.+... ++++++.++++
T Consensus 44 ~~~d~iiig~pty~~g~~p-~~~~~~fl~~l~~~l~~k~~~~f~t~ 88 (138)
T 5nul_A 44 LNEDILILGCSAMTDEVLE-ESEFEPFIEEISTKISGKKVALFGSY 88 (138)
T ss_dssp TTCSEEEEEECCBTTTBCC-TTTHHHHHHHHGGGCTTCEEEEEEEE
T ss_pred hhCCEEEEEcCccCCCCCC-hHHHHHHHHHHHhhcCCCEEEEEEec
Confidence 478988885432 211111 1157777777664 68888888764
No 98
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Probab=47.85 E-value=1e+02 Score=24.30 Aligned_cols=30 Identities=13% Similarity=0.035 Sum_probs=18.1
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEE
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIA 121 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~ 121 (219)
.+.|+|+++.... .-.+.+.+..++|+.|.
T Consensus 64 ~~~DvViiatp~~--------~h~~~~~~al~aG~~Vi 93 (304)
T 3bio_A 64 ESVDVALVCSPSR--------EVERTALEILKKGICTA 93 (304)
T ss_dssp SSCCEEEECSCHH--------HHHHHHHHHHTTTCEEE
T ss_pred CCCCEEEECCCch--------hhHHHHHHHHHcCCeEE
Confidence 4799999976432 12344455566666654
No 99
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=47.20 E-value=79 Score=25.84 Aligned_cols=42 Identities=12% Similarity=-0.001 Sum_probs=26.8
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHh----cCCeEEEEehhH
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN----SGKTIASICHGQ 127 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~----~~~~v~~ic~G~ 127 (219)
.++|.|++....-. ....+.+..||.+... ++|+++.++++.
T Consensus 306 ~~~D~iiigsP~y~--~~~~~~~k~fld~l~~~~~~~~K~~~~~~t~g 351 (414)
T 2q9u_A 306 YDSGAVAFASPTLN--NTMMPSVAAALNYVRGLTLIKGKPAFAFGAFG 351 (414)
T ss_dssp HTCSEEEEECCCBT--TBCCHHHHHHHHHHHHHTTTTTSBEEEEEEES
T ss_pred HhCCEEEEEcCccC--cCchHHHHHHHHHHHhhcccCCCEEEEEEecC
Confidence 37999998653211 1234567777776553 789988888763
No 100
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=46.75 E-value=13 Score=29.21 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=48.9
Q ss_pred CCEEEEEecCC---CCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCC
Q 027785 8 KRSVLLLCGDY---MEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 84 (219)
Q Consensus 8 ~~kv~il~~~g---~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 84 (219)
+++|++++.+- |...-+.++.+.+++.|+++.+......+ - ... ..++.+-..
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~----------------~-----~~~---~~i~~~~~~ 58 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDI----------------P-----NQL---SQIENMVTK 58 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTCH----------------H-----HHH---HHHHHHHHH
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCCH----------------H-----HHH---HHHHHHHHc
Confidence 57899999753 33334455667777889998887644321 0 000 011111113
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
.+|.||+.+.. .......+++..+.+.|++.+..
T Consensus 59 ~vdgiIi~~~~-------~~~~~~~~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 59 GVKVLVIASID-------GTTLSDVLKQAGEQGIKVIAYDR 92 (330)
T ss_dssp TCSEEEECCSS-------GGGGHHHHHHHHHTTCEEEEESS
T ss_pred CCCEEEEEcCC-------chhHHHHHHHHHHCCCCEEEECC
Confidence 68999986532 12233455666667777776643
No 101
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=44.72 E-value=35 Score=25.09 Aligned_cols=38 Identities=13% Similarity=-0.116 Sum_probs=23.0
Q ss_pred CCEEEEEecCCCC--chhhHHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCGDYME--DYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~~g~~--~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
++||+|+.+.... ..=+-.+.+.+...|.+++++....
T Consensus 6 mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 6 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 3589888865422 2222334455666788888887653
No 102
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=43.88 E-value=12 Score=28.74 Aligned_cols=37 Identities=8% Similarity=-0.244 Sum_probs=24.4
Q ss_pred CCEEEEEecCCCC---chhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYME---DYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~---~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+++|++++.+-.+ ..-+.++.+.+.+.|+++.+....
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 47 (293)
T 3l6u_A 8 RNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQ 47 (293)
T ss_dssp -CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 6789999975322 223455666777889998887554
No 103
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=42.85 E-value=27 Score=26.96 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=24.6
Q ss_pred CCEEEEEecC----CCCchhhHHHHHHHHhCCCeEEEecCCCC
Q 027785 8 KRSVLLLCGD----YMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (219)
Q Consensus 8 ~~kv~il~~~----g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (219)
++||++|... +.+..=+-.+.+.+...|.+++++.....
T Consensus 34 ~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~ 76 (247)
T 2q62_A 34 RPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGL 76 (247)
T ss_dssp CCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTC
T ss_pred CCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcC
Confidence 5789888854 22222233345566677999999877543
No 104
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=42.29 E-value=25 Score=25.52 Aligned_cols=36 Identities=14% Similarity=-0.019 Sum_probs=20.8
Q ss_pred CEEEEEecCCCCchh--hHHHHHHHHhCCCeEEEecCCC
Q 027785 9 RSVLLLCGDYMEDYE--AMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 9 ~kv~il~~~g~~~~e--~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
+||+|+.+. ..-.+ +-.+.+.+...|.+++++....
T Consensus 5 mkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 42 (199)
T 2zki_A 5 PNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRE 42 (199)
T ss_dssp CEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred cEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhH
Confidence 488888876 22221 1223344555688888886653
No 105
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=42.29 E-value=21 Score=27.53 Aligned_cols=35 Identities=11% Similarity=-0.023 Sum_probs=22.6
Q ss_pred CCEEEEEecCC-CC---chhhHHHHHHHHhC-CCeEEEec
Q 027785 8 KRSVLLLCGDY-ME---DYEAMVPFQALLAF-GVSVDAAC 42 (219)
Q Consensus 8 ~~kv~il~~~g-~~---~~e~~~~~~~l~~a-g~~v~~~s 42 (219)
+++|++++.+. .+ ..=+.++.+.+.+. |+.+.+..
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~ 47 (304)
T 3gbv_A 8 KYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANI 47 (304)
T ss_dssp CEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEE
T ss_pred cceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 67899998764 22 23344555666677 88887754
No 106
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=42.05 E-value=60 Score=24.77 Aligned_cols=37 Identities=8% Similarity=-0.295 Sum_probs=24.1
Q ss_pred CCEEEEEecC-C------CCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGD-Y------MEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~-g------~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+++|++++.+ - |...-+.++.+.+++.|+++.+....
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 47 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFS 47 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5689999865 2 22233445566777889998776543
No 107
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=41.42 E-value=30 Score=26.30 Aligned_cols=39 Identities=5% Similarity=-0.181 Sum_probs=25.9
Q ss_pred CCCEEEEEecCCC---CchhhHHHHHHHHhCCCeEEEecCCC
Q 027785 7 GKRSVLLLCGDYM---EDYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 7 ~~~kv~il~~~g~---~~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
++++|++++.+-. ...-+.++.+.+.+.|+++.+.....
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~ 47 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANA 47 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3678999997532 22334455666777899998876553
No 108
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=40.75 E-value=28 Score=25.81 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=23.4
Q ss_pred CCccEEEEcCCCCccc-ccCChHHHHHHHHHHh------cCCeEEEEehh
Q 027785 84 TKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSN------SGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~~~~~-~~~~~~l~~~l~~~~~------~~~~v~~ic~G 126 (219)
...|+|||.- |.+ ..-...+..||-.... ++|+++.++++
T Consensus 72 ~~AD~iVi~t---P~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~ts 118 (199)
T 4hs4_A 72 ATADAVVIVT---PEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
T ss_dssp HHSSEEEEEE---CCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEEC
T ss_pred HhCCEEEEEc---CccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeC
Confidence 4688888853 111 1234566666666654 56776666653
No 109
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=39.42 E-value=56 Score=24.17 Aligned_cols=36 Identities=14% Similarity=-0.016 Sum_probs=27.1
Q ss_pred CEEEEEecC-CCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 9 RSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 9 ~kv~il~~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
.||.+...+ ...+.........|+.+||++..+..+
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~ 125 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVD 125 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSS
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCC
Confidence 466666554 566677888889999999999888654
No 110
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=39.23 E-value=22 Score=25.69 Aligned_cols=35 Identities=11% Similarity=0.023 Sum_probs=21.7
Q ss_pred CCEEEEEecCC-----------CCchhhHHHHHHHHhCCCeEEEec
Q 027785 8 KRSVLLLCGDY-----------MEDYEAMVPFQALLAFGVSVDAAC 42 (219)
Q Consensus 8 ~~kv~il~~~g-----------~~~~e~~~~~~~l~~ag~~v~~~s 42 (219)
+.||+|+.-.+ ..+..--.+...|.+.|+++....
T Consensus 15 ~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~ 60 (178)
T 3iwt_A 15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYS 60 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEE
Confidence 56899987421 122223456788889999875543
No 111
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=38.84 E-value=54 Score=23.52 Aligned_cols=92 Identities=18% Similarity=0.151 Sum_probs=52.5
Q ss_pred CEEEEEecCCCCc---hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccC--CCC
Q 027785 9 RSVLLLCGDYMED---YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDE--IDP 83 (219)
Q Consensus 9 ~kv~il~~~g~~~---~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~--~~~ 83 (219)
.||+|+.....+. .-+.+..+.|.+.|.+++++..-+. .-+++....-..+ ...
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGa---------------------fEiP~aa~~la~~~~~~~ 71 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGA---------------------LEIPATISFALDGADNGG 71 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSG---------------------GGHHHHHHHHHHHHHTTC
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEECCcH---------------------HHHHHHHHHHHhhccccC
Confidence 5899999874443 4567788999999977777755331 1111111111111 012
Q ss_pred CCccEEEEcCCC--Ccc---cccCChHHHHHHHHHHhcCCeEE
Q 027785 84 TKYDGLVIPGGR--APE---YLAMNDSVIDLVRKFSNSGKTIA 121 (219)
Q Consensus 84 ~~~D~liipGG~--~~~---~~~~~~~l~~~l~~~~~~~~~v~ 121 (219)
.+||+++..|-- |.- .+-.+.....+.+-..+.+.||.
T Consensus 72 ~~yDavIaLG~VIrG~T~Hfd~Va~~v~~gl~~vsl~~~vPV~ 114 (157)
T 2i0f_A 72 TEYDGFVALGTVIRGETYHFDIVSNESCRALTDLSVEESIAIG 114 (157)
T ss_dssp CCCSEEEEEEEEECCSSSTTHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEeeeeecCCchHHHHHHHHHHHHHHHHHhhcCCCEE
Confidence 479999988753 321 11123344556666667788865
No 112
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=38.46 E-value=78 Score=20.38 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=20.8
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEec
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC 42 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s 42 (219)
++||+|+=- +..........|...|+.+..++
T Consensus 7 ~~~ilivdd---~~~~~~~l~~~L~~~g~~v~~~~ 38 (130)
T 3eod_A 7 GKQILIVED---EQVFRSLLDSWFSSLGATTVLAA 38 (130)
T ss_dssp TCEEEEECS---CHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCeEEEEeC---CHHHHHHHHHHHHhCCceEEEeC
Confidence 567766642 33345566778888899876643
No 113
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=38.46 E-value=38 Score=23.17 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=22.8
Q ss_pred CC-ccEEEEcCCC-Cccc--ccCChHHHHHHHHHHh---cCCeEEEEehhH
Q 027785 84 TK-YDGLVIPGGR-APEY--LAMNDSVIDLVRKFSN---SGKTIASICHGQ 127 (219)
Q Consensus 84 ~~-~D~liipGG~-~~~~--~~~~~~l~~~l~~~~~---~~~~v~~ic~G~ 127 (219)
.+ +|.|++.... +... + ...+..|+.+... .++.++.+|+|.
T Consensus 46 ~~~~d~ii~~~p~y~~g~~~~--p~~~~~fl~~l~~~~l~~k~~~v~~~g~ 94 (147)
T 1f4p_A 46 FEGFDLVLLGCSTWGDDSIEL--QDDFIPLFDSLEETGAQGRKVACFGCGD 94 (147)
T ss_dssp TTTCSEEEEEECEECSSSCEE--CTTTHHHHHTGGGSCCTTCEEEEEEEEC
T ss_pred cCcCCEEEEEeCCCCCCCcCC--ChhHHHHHHHHHhcccCCCEEEEEeecC
Confidence 46 8988885321 1111 1 2345566655432 477777777753
No 114
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=38.28 E-value=45 Score=23.99 Aligned_cols=37 Identities=16% Similarity=-0.021 Sum_probs=22.1
Q ss_pred CEEEEEecCCCCc--hhhHHHHHHHHh-CCCeEEEecCCC
Q 027785 9 RSVLLLCGDYMED--YEAMVPFQALLA-FGVSVDAACPGK 45 (219)
Q Consensus 9 ~kv~il~~~g~~~--~e~~~~~~~l~~-ag~~v~~~s~~~ 45 (219)
+||+|+.+....- .=.-.+.+.+.. .|.+++++....
T Consensus 2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~ 41 (198)
T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPE 41 (198)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCC
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccc
Confidence 4788887653221 222334555666 788888887653
No 115
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=38.25 E-value=59 Score=25.46 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=32.0
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (219)
++||+|--=||+....+..+.+.|+. +.+|.+++|+..
T Consensus 11 ~m~ILlTNDDGi~apGi~aL~~~l~~-~~~V~VVAP~~~ 48 (261)
T 3ty2_A 11 KLRLLLSNDDGVYAKGLAILAKTLAD-LGEVDVVAPDRN 48 (261)
T ss_dssp CCEEEEECSSCTTCHHHHHHHHHHTT-TSEEEEEEESSC
T ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHh-cCCEEEEecCCC
Confidence 46777777789999999999999987 679999999764
No 116
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=38.14 E-value=1.4e+02 Score=23.11 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=32.5
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
++|.|++.+|-+.-|-......|...|++|.++-..
T Consensus 86 ~~vlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~ 121 (259)
T 3d3k_A 86 PTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPN 121 (259)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEec
Confidence 589999999999999999999999999999988654
No 117
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=38.05 E-value=36 Score=25.98 Aligned_cols=38 Identities=11% Similarity=-0.095 Sum_probs=26.2
Q ss_pred CCEEEEEecCC---CCchhhHHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCGDY---MEDYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~~g---~~~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
+++|++++.+- |...-+.++.+.+.+.|+++.+.....
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 55 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNN 55 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46899998752 333445566777778899998876543
No 118
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=37.27 E-value=40 Score=26.70 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=48.5
Q ss_pred CCEEEEEecCCCC----chhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCC
Q 027785 8 KRSVLLLCGDYME----DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP 83 (219)
Q Consensus 8 ~~kv~il~~~g~~----~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 83 (219)
+++|++++.+-.+ ..-..++.+.+++.|+++.+......+ - ... ..+.++-.
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~----------------~-----~~~---~~i~~~i~ 58 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDP----------------Q-----NTL---QQARELFQ 58 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCH----------------H-----HHH---HHHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCH----------------H-----HHH---HHHHHHHh
Confidence 4689999976332 233445566666779998887544321 0 000 01111111
Q ss_pred --CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 84 --TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 84 --~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
..+|.||+.+ . .......++++.+.+.|++.+..
T Consensus 59 ~~~~vDgiIi~~-~-------~~~~~~~~~~~~~~giPvV~~~~ 94 (350)
T 3h75_A 59 GRDKPDYLMLVN-E-------QYVAPQILRLSQGSGIKLFIVNS 94 (350)
T ss_dssp SSSCCSEEEEEC-C-------SSHHHHHHHHHTTSCCEEEEEES
T ss_pred cCCCCCEEEEeC-c-------hhhHHHHHHHHHhCCCcEEEEcC
Confidence 3689999864 1 12344566777777888887754
No 119
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=37.26 E-value=16 Score=28.25 Aligned_cols=34 Identities=12% Similarity=-0.062 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCC---chhhHHHHHHHHhCCCeEEEe
Q 027785 8 KRSVLLLCGDYME---DYEAMVPFQALLAFGVSVDAA 41 (219)
Q Consensus 8 ~~kv~il~~~g~~---~~e~~~~~~~l~~ag~~v~~~ 41 (219)
+++|++++.+.-+ ..-+.++.+.+++.|+++.+.
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 40 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYR 40 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEe
Confidence 5689999976332 233445566667789999874
No 120
>1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein STRU initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.114.1.1
Probab=37.20 E-value=45 Score=21.92 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=32.2
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
+.|+.+|.-|.+...+..+.++.+.|+...++|. ...+|.-+.
T Consensus 34 ~~~i~vv~~G~av~~~~~~~~~~~~i~~L~~~gV-~~~~C~~~l 76 (113)
T 1l1s_A 34 SVRIEVVAYSMGVNVLRRDSEYSGDVSELTGQGV-RFCACSNTL 76 (113)
T ss_dssp SEEEEEEECGGGGGGGBTTCTTHHHHHHHHHTTC-EEEEEHHHH
T ss_pred CCcEEEEEechHHHHHHcCChHHHHHHHHHHCCC-EEEecHHHH
Confidence 5888899888876655566778899998888765 445787763
No 121
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=35.06 E-value=23 Score=27.15 Aligned_cols=37 Identities=11% Similarity=-0.088 Sum_probs=23.3
Q ss_pred CCEEEEEecCCC---CchhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYM---EDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~---~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+++|++++.+-. ...-+.++.+.+.+.|+++.+....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 41 (290)
T 2fn9_A 2 KGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQ 41 (290)
T ss_dssp -CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 468999986522 2223445566777789988776543
No 122
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=34.59 E-value=40 Score=25.72 Aligned_cols=36 Identities=8% Similarity=-0.200 Sum_probs=20.8
Q ss_pred CCCCCCCCCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEe
Q 027785 1 MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAA 41 (219)
Q Consensus 1 ~~~~~~~~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~ 41 (219)
|-+.|...+||+|.-... -....+.|++.|+++..+
T Consensus 1 ~e~~~l~g~~vlvtr~~~-----~~~l~~~L~~~G~~~~~~ 36 (261)
T 1wcw_A 1 MRRLEEDAVRVAYAGLRR-----KEAFKALAEKLGFTPLLF 36 (261)
T ss_dssp -------CCEEEECCSTT-----HHHHHHHHHHTTCEEEEC
T ss_pred CCCCCCCCCEEEEeCCCc-----hHHHHHHHHHCCCcEEEe
Confidence 445555578888765332 366678899999887665
No 123
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=34.25 E-value=48 Score=25.25 Aligned_cols=37 Identities=5% Similarity=-0.104 Sum_probs=24.3
Q ss_pred CCEEEEEecC-----CCC---chhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGD-----YME---DYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~-----g~~---~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+++|++++.+ -.+ ..=+.++.+.+.+.|+++.+....
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 52 (292)
T 3k4h_A 8 TKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGE 52 (292)
T ss_dssp CCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred CCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 6789999876 222 233445566777889998876544
No 124
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=34.12 E-value=70 Score=24.86 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=32.5
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (219)
+||++--=||+....+..+.+.|+..| +|.+++|+..
T Consensus 2 M~ILlTNDDGi~apGi~aL~~~l~~~g-~V~VVAP~~~ 38 (251)
T 2phj_A 2 PTFLLVNDDGYFSPGINALREALKSLG-RVVVVAPDRN 38 (251)
T ss_dssp CEEEEECSSCTTCHHHHHHHHHHTTTS-EEEEEEESSC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHhcC-CEEEEecCCC
Confidence 478877789999999999999999998 9999999764
No 125
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=33.73 E-value=31 Score=25.47 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=29.2
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 82 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 82 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
++.+.|+++|-|... ......++.+.++..+-|+|.++++=+
T Consensus 71 SPrqaDiliVeG~Vt----~~m~~~l~~~~e~~p~pk~VIAvGsCA 112 (181)
T 3i9v_6 71 SPRQADVMIVAGRLS----KKMAPVMRRVWEQMPDPKWVISMGACA 112 (181)
T ss_dssp ---CCCCEEEESCCB----TTTHHHHHHHHHSSCSSCCEEEEHHHH
T ss_pred CCCCceEEEEeccCC----cccHHHHHHHHHHcCCCceEEEeeccc
Confidence 356899999998643 234566777788888899999887643
No 126
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=33.22 E-value=41 Score=25.73 Aligned_cols=37 Identities=5% Similarity=-0.151 Sum_probs=24.5
Q ss_pred CCEEEEEecCC-----CCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDY-----MEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g-----~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+++|++++.+. |...=+.++.+.+.+.|+++.+....
T Consensus 8 s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 49 (288)
T 3gv0_A 8 TNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHI 49 (288)
T ss_dssp CCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBS
T ss_pred CCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 67899999752 23333445556666789998887554
No 127
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=33.17 E-value=42 Score=24.10 Aligned_cols=92 Identities=10% Similarity=0.094 Sum_probs=51.4
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEE--EecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVD--AACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 85 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 85 (219)
+.||+|+.....+..=+.+..+.|.+.|...+ ++..-+ +.-+++....-.. ..+
T Consensus 2 ~~ri~IV~arfn~~~Ll~gA~~~L~~~G~~~~i~~~~VPG---------------------afEiP~aak~la~---~~~ 57 (156)
T 2b99_A 2 TKKVGIVDTTFARVDMASIAIKKLKELSPNIKIIRKTVPG---------------------IKDLPVACKKLLE---EEG 57 (156)
T ss_dssp CCEEEEEEESSCSSCCHHHHHHHHHHHCTTCEEEEEEESS---------------------GGGHHHHHHHHHH---HSC
T ss_pred CcEEEEEEEecchHHHHHHHHHHHHHcCCCCeEEEEECCc---------------------HHHHHHHHHHHHh---cCC
Confidence 35899999764445556888899999885332 232221 1112222221111 147
Q ss_pred ccEEEEcCCCCcc---cccCChHHHHHHHHHHhcCCeEEEE
Q 027785 86 YDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASI 123 (219)
Q Consensus 86 ~D~liipGG~~~~---~~~~~~~l~~~l~~~~~~~~~v~~i 123 (219)
||++|..|--|.- .+-.+.....+.+-..+.++||..-
T Consensus 58 yDavIaLG~VG~T~Hfd~Va~~vs~Gl~~v~L~~~vPV~~g 98 (156)
T 2b99_A 58 CDIVMALGMPGKAEKDKVCAHEASLGLMLAQLMTNKHIIEV 98 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEecccCCcchhHHHHHHHHHHHHHHHhhhCCCEEEE
Confidence 9999998866421 1122334455555566678887643
No 128
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=33.13 E-value=73 Score=24.63 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=32.2
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCC
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (219)
||+|--=||+....+..+.+.|+..| +|.+++|+..
T Consensus 3 ~ILlTNDDGi~apGi~~L~~~l~~~g-~V~VvAP~~~ 38 (251)
T 2wqk_A 3 TFLLVNDDGYFSPGINALREALKSLG-RVVVVAPDRN 38 (251)
T ss_dssp EEEEECSSCTTCHHHHHHHHHHTTTS-EEEEEEESSC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHhCC-CEEEEeeCCC
Confidence 88888889999999999999999998 7889998764
No 129
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=32.78 E-value=30 Score=28.01 Aligned_cols=37 Identities=11% Similarity=0.220 Sum_probs=25.8
Q ss_pred CCEEEEEecCCCCchhhHH-----HHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYMEDYEAMV-----PFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~-----~~~~l~~ag~~v~~~s~~ 44 (219)
.|||+||..-...+.|++. ++..|++.||++..+..+
T Consensus 3 kkkv~vl~GG~S~E~evSl~Sa~~v~~aL~~~gy~v~~i~i~ 44 (357)
T 4fu0_A 3 NKKIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGIT 44 (357)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEEC
T ss_pred CCEEEEEECCCccchHHHHHHHHHHHHHHhHhCCEEEEEEEe
Confidence 5799998765555556543 567777889998777443
No 130
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=32.59 E-value=1e+02 Score=23.25 Aligned_cols=36 Identities=8% Similarity=-0.116 Sum_probs=23.4
Q ss_pred CCEEEEEecCCC----CchhhHHHHHHHHhCCCeEEEecC
Q 027785 8 KRSVLLLCGDYM----EDYEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 8 ~~kv~il~~~g~----~~~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
+++|++++.... ...-+.++.+.+.+.|+++.+...
T Consensus 11 ~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~ 50 (289)
T 3g85_A 11 KPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVIC 50 (289)
T ss_dssp CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEE
T ss_pred CceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 678999997322 223345566667778988776543
No 131
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=32.28 E-value=35 Score=24.46 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=27.6
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
..+||.|++....-. ....+.+..||.+..-++|.++.+|+.
T Consensus 85 l~~yD~iilg~Pvy~--g~~~~~~~~fl~~~~l~gk~v~~f~t~ 126 (171)
T 4ici_A 85 IGTYDVVFIGYPIWW--DLAPRIINTFIEGHSLKGKTVVPFATS 126 (171)
T ss_dssp GGGCSEEEEEEECBT--TBCCHHHHHHHHHSCCTTSEEEEEEEC
T ss_pred HhHCCEEEEeccccc--CCchHHHHHHHHHcCCCcCEEEEEEec
Confidence 458999998432211 123577889998875567877777664
No 132
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=32.03 E-value=94 Score=23.39 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=28.4
Q ss_pred CCCCCCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCC
Q 027785 4 SKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 4 ~~~~~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
||..+.|++++...+.+ =-...-.+|.++||+|.-+....
T Consensus 21 mp~~~Lr~avVCaSN~N--RSMEAH~~L~k~Gf~V~SfGTGs 60 (214)
T 4h3k_B 21 MPSSPLRVAVVSSSNQN--RSMEAHNILSKRGFSVRSFGTGT 60 (214)
T ss_dssp -----CEEEEEESSSSS--HHHHHHHHHHHTTCEEEEEECSS
T ss_pred CCCCCCeEEEECCCCcc--hhHHHHHHHHHCCCceEeecCCC
Confidence 55446799999988766 44566788999999998887754
No 133
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=31.78 E-value=50 Score=26.06 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=24.4
Q ss_pred CEEEEEecCCCCchhh--HHHHHHHHhCCCeEEEecCCC
Q 027785 9 RSVLLLCGDYMEDYEA--MVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~--~~~~~~l~~ag~~v~~~s~~~ 45 (219)
+||+++.. +....+. ......|.+.|++|.+++...
T Consensus 7 mkIl~~~~-~~gG~~~~~~~la~~L~~~G~~V~v~~~~~ 44 (364)
T 1f0k_A 7 KRLMVMAG-GTGGHVFPGLAVAHHLMAQGWQVRWLGTAD 44 (364)
T ss_dssp CEEEEECC-SSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred cEEEEEeC-CCccchhHHHHHHHHHHHcCCEEEEEecCC
Confidence 69999863 3322222 256677888899999998764
No 134
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=31.71 E-value=31 Score=24.42 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=26.9
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
..+||.|++....-. ....+.+..||.+..-++|+++.+|+
T Consensus 76 l~~yd~iilG~P~~~--g~~~~~~~~fl~~~~l~gk~v~~f~t 116 (162)
T 3klb_A 76 PEKYEVLFVGFPVWW--YIAPTIINTFLESYDFAGKIVVPFAT 116 (162)
T ss_dssp GGGCSEEEEEEECBT--TBCCHHHHHHHHTSCCTTCEEEEEEE
T ss_pred hhhCCEEEEEccccc--CCCCHHHHHHHHhcCCCCCEEEEEEE
Confidence 458999998432111 12357788999876556777777765
No 135
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=31.54 E-value=1.4e+02 Score=22.14 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=28.8
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
+.|++++...+.+ --...-.+|.++||+|.-++...
T Consensus 9 ~l~~avVCaSN~N--RSMEaH~~L~k~G~~V~SfGTGs 44 (198)
T 3p9y_A 9 KLAVAVVDSSNMN--RSMEAHNFLAKKGFNVRSYGTGE 44 (198)
T ss_dssp CCEEEEEESSSSS--HHHHHHHHHHHTTCEEEEEECSS
T ss_pred CceEEEEcCCCCc--ccHHHHHHHHhCCCceeecCCCc
Confidence 6799999988776 33666788999999998877754
No 136
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=31.46 E-value=45 Score=25.64 Aligned_cols=38 Identities=5% Similarity=-0.108 Sum_probs=25.1
Q ss_pred CCCEEEEEecC--------CCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 7 GKRSVLLLCGD--------YMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 7 ~~~kv~il~~~--------g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
++++|++++.+ .|...=+.++.+.+.+.|+++.+....
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~ 51 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSN 51 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCC
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 36789999832 233334556667777889998776543
No 137
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=31.08 E-value=78 Score=22.90 Aligned_cols=39 Identities=8% Similarity=0.065 Sum_probs=32.2
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 82 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 82 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
+..+-|.++|..-. .+++..++..++..++|.++.+||+
T Consensus 74 ~i~~~D~vii~S~S-----g~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 74 TLHAVDRVLIFTPD-----TERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp CCCTTCEEEEEESC-----SCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCCCCEEEEEeCC-----CCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 34578888886533 3688999999999999999999998
No 138
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=31.01 E-value=82 Score=22.24 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=30.2
Q ss_pred CCEEEEEecCCCCchh--hHHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCGDYMEDYE--AMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e--~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
.+|+.|++.||....+ +......++..|..+..++...
T Consensus 122 ~~~~iillTDG~~~~~~~~~~~~~~l~~~gi~v~~igvG~ 161 (178)
T 2xgg_A 122 VPKLVIGMTDGESDSDFRTVRAAKEIRELGGIVTVLAVGH 161 (178)
T ss_dssp SCEEEEEEESSCCCHHHHHSHHHHHHHHTTCEEEEEECC-
T ss_pred CCEEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEcCC
Confidence 4689999999987665 7777888888999888887754
No 139
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=30.65 E-value=1.2e+02 Score=20.35 Aligned_cols=81 Identities=11% Similarity=0.016 Sum_probs=47.3
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
+++|+|+=...-...--..+...|.+.||++..+.+..+. + .|.+ .-.++.+++ . .|
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~----------------i---~G~~--~y~sl~dlp-~-vD 60 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGE----------------V---LGKT--IINERPVIE-G-VD 60 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSE----------------E---TTEE--CBCSCCCCT-T-CC
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCc----------------C---CCee--ccCChHHCC-C-CC
Confidence 4789988543222222345566777789998888886531 1 2322 233566664 4 88
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCe
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKT 119 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~ 119 (219)
+++|.= ..+.+.+.++++.+.|..
T Consensus 61 lavi~~--------p~~~v~~~v~e~~~~g~k 84 (122)
T 3ff4_A 61 TVTLYI--------NPQNQLSEYNYILSLKPK 84 (122)
T ss_dssp EEEECS--------CHHHHGGGHHHHHHHCCS
T ss_pred EEEEEe--------CHHHHHHHHHHHHhcCCC
Confidence 888742 234555666666666644
No 140
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=30.40 E-value=60 Score=24.90 Aligned_cols=37 Identities=8% Similarity=-0.245 Sum_probs=24.8
Q ss_pred CCEEEEEecC----C---CCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGD----Y---MEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~----g---~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+++|++++.. - |...=+.++.+.+.+.|+++.+...+
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 49 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDE 49 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 6789999972 1 22233455666777889998887654
No 141
>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} SCOP: c.151.1.1 c.152.1.1
Probab=30.30 E-value=48 Score=26.95 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCeEEEEehhHHHH-HhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEE--cCCeE---eCCC
Q 027785 105 SVIDLVRKFSNSGKTIASICHGQLIL-AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVV--DGNII---TGAT 178 (219)
Q Consensus 105 ~l~~~l~~~~~~~~~v~~ic~G~~~L-a~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~--dg~li---T~~g 178 (219)
.+.+++++.+.+...+.+||..-.+. .=|.+|.+|. .++.+ +|+ +|+.+ .++-
T Consensus 43 ~~~~~~~~~f~~~d~iIfI~A~GIvVR~IAPll~dK~------------------~DPaV---vvvDe~G~~vIpLLsGH 101 (336)
T 3eeq_A 43 YKDAEIETIWKCYDAIVFVMALEGATRIVCKYAKSKT------------------EDPAI---VCIDDKINYVIPLLGGH 101 (336)
T ss_dssp GGGCCHHHHTTTCSEEEEESCHHHHHHHHHHHCCCTT------------------TCCEE---EEECTTCCEEEEEECTT
T ss_pred CHHHHHHHHhcCCCeEEEEeChHHHHHHhCchhccCC------------------CCCCE---EEEeCCCCEEEEeccCc
Confidence 57788999999999988888754433 3357777643 23322 333 35554 4555
Q ss_pred CCCHHHHHHHHHHHHccccccc
Q 027785 179 YEGHPEFIRLFLKALGGTITGS 200 (219)
Q Consensus 179 ~~s~~~~~l~li~~l~~~~~~~ 200 (219)
. .+.+++..|.+.+++.....
T Consensus 102 ~-GAN~LA~~IA~~lga~pVIT 122 (336)
T 3eeq_A 102 W-GANDIARELSVILNSTPIIT 122 (336)
T ss_dssp T-THHHHHHHHHHHTTCEECCC
T ss_pred h-hHHHHHHHHHHHhCCEEEEe
Confidence 5 99999999999999986643
No 142
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=30.18 E-value=54 Score=25.69 Aligned_cols=39 Identities=15% Similarity=0.007 Sum_probs=26.5
Q ss_pred CCEEEEEecC---------------CCCc--hhhHHHHHHHHhCCCeEEEecCCCC
Q 027785 8 KRSVLLLCGD---------------YMED--YEAMVPFQALLAFGVSVDAACPGKK 46 (219)
Q Consensus 8 ~~kv~il~~~---------------g~~~--~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (219)
++||+++... .... .-+......|.+.|+++.+++....
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~ 58 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGS 58 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTS
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4699998865 1111 2234566778888999999988754
No 143
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=30.05 E-value=43 Score=25.93 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=45.6
Q ss_pred hhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccc--
Q 027785 23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL-- 100 (219)
Q Consensus 23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~-- 100 (219)
+..-+.+.|+..+++|++++.+... .++. . +.++ ..+||+||+.. .+...+
T Consensus 34 g~~~~~~aL~~~~~~V~~i~~~~~~--------------------~~fP--~--~~~~--L~~yDvIIl~d-~~~~~~l~ 86 (248)
T 3soz_A 34 GADYLLSCLRQGNIDVDYMPAHIVQ--------------------TRFP--Q--TAEA--LACYDAIVISD-IGSNTFLL 86 (248)
T ss_dssp CSHHHHHHHTTTTCEEEEEETTHHH--------------------HSCC--C--SHHH--HHTCSEEEEES-CCHHHHHS
T ss_pred hHHHHHHHHhcCCceeEEeCchhhh--------------------hhCC--C--ChHH--HhcCCEEEEcC-CCcchhcc
Confidence 4455788899999999999765210 0111 0 1122 24899999973 222111
Q ss_pred --------cCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 101 --------AMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 101 --------~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
...+.-.+.|+++.++|.-+..+..
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~V~~GGgLi~~gG 119 (248)
T 3soz_A 87 QNRTFYNMDIIPDALQLIADYVAEGGGLLMIGG 119 (248)
T ss_dssp CHHHHTTCCCCCCHHHHHHHHHHTTCEEEEECS
T ss_pred CccccccccCCHHHHHHHHHHHHhCCEEEEEcC
Confidence 0123347788888888887776643
No 144
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=29.97 E-value=1.6e+02 Score=24.90 Aligned_cols=32 Identities=9% Similarity=-0.067 Sum_probs=23.0
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEec
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC 42 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s 42 (219)
.+||.|+=. -....+.....|...|++|....
T Consensus 22 ~~~v~viGi---G~sG~s~~A~~l~~~G~~V~~~D 53 (494)
T 4hv4_A 22 VRHIHFVGI---GGAGMGGIAEVLANEGYQISGSD 53 (494)
T ss_dssp CCEEEEETT---TSTTHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEEEE---cHhhHHHHHHHHHhCCCeEEEEE
Confidence 467777644 34466667889999999997654
No 145
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=29.90 E-value=32 Score=26.50 Aligned_cols=37 Identities=8% Similarity=-0.184 Sum_probs=23.2
Q ss_pred CCEEEEEecCCCC---chhhHHHHHHHHhCCC-eEEEecCC
Q 027785 8 KRSVLLLCGDYME---DYEAMVPFQALLAFGV-SVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~---~~e~~~~~~~l~~ag~-~v~~~s~~ 44 (219)
+++|++++.+-.+ ..-+.++.+.+.+.|+ ++.+....
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 42 (309)
T 2fvy_A 2 DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQ 42 (309)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEECT
T ss_pred CcEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 5789999865322 2234455566677898 88776543
No 146
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}
Probab=29.73 E-value=74 Score=25.58 Aligned_cols=81 Identities=10% Similarity=0.158 Sum_probs=53.6
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCc
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETM 164 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~ 164 (219)
.+++++.|. ..+++.+.++.+.+++.++..++.|+-++...+-.+| +. ++-...
T Consensus 54 ~p~~vv~P~--------s~eev~~~v~~a~~~~~pv~v~GgGsnl~~~~~~~~g--vv----------------I~l~~~ 107 (322)
T 3tx1_A 54 AADVFVMPK--------TIEEAQEVVAYCHQNKIPLTILGNGSNLIIKDGGIRG--VI----------------LHLDLL 107 (322)
T ss_dssp EEEEEEECS--------SHHHHHHHHHHHHHTTCCEEEESCCTTEEECTTCEEE--EE----------------EECTTC
T ss_pred eeeEEEEeC--------CHHHHHHHHHHHHHcCCcEEEECCccCCCcCCCCCCe--EE----------------EECCCC
Confidence 455666553 3467889999999999999999999876643211111 11 111101
Q ss_pred ceEEEcCCeEeCCCCCCHHHHHHHHHH
Q 027785 165 AACVVDGNIITGATYEGHPEFIRLFLK 191 (219)
Q Consensus 165 ~~~v~dg~liT~~g~~s~~~~~l~li~ 191 (219)
..+..|++.+|+.....+.++..++.+
T Consensus 108 ~~I~~d~~~v~v~aG~~~~~l~~~l~~ 134 (322)
T 3tx1_A 108 QTIERNNTQIVAMSGAKLIDTAKFALN 134 (322)
T ss_dssp CCEEEETTEEEEETTSBHHHHHHHHHH
T ss_pred CcEEECCCEEEEecCcCHHHHHHHHHH
Confidence 124457788999888899999988886
No 147
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=29.71 E-value=82 Score=24.20 Aligned_cols=38 Identities=11% Similarity=-0.154 Sum_probs=25.2
Q ss_pred CCEEEEEecCC---CCchhhHHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCGDY---MEDYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~~g---~~~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
+++|++++.+- |...=+.++.+.+++.|+++.+.....
T Consensus 15 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 55 (303)
T 3kke_A 15 SGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDA 55 (303)
T ss_dssp --CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 56799998752 333445566777788899998876543
No 148
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=29.26 E-value=53 Score=22.27 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=20.4
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEec
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC 42 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s 42 (219)
++||+|+ ++ +..........|...|+++..++
T Consensus 7 ~~~ILiv--dd-~~~~~~~l~~~L~~~g~~v~~~~ 38 (154)
T 3gt7_A 7 AGEILIV--ED-SPTQAEHLKHILEETGYQTEHVR 38 (154)
T ss_dssp CCEEEEE--CS-CHHHHHHHHHHHHTTTCEEEEES
T ss_pred CCcEEEE--eC-CHHHHHHHHHHHHHCCCEEEEeC
Confidence 3566554 32 33455667788888899886654
No 149
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=29.21 E-value=1.1e+02 Score=21.65 Aligned_cols=63 Identities=13% Similarity=0.079 Sum_probs=36.1
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG 88 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 88 (219)
..|+||...+ .+...+.+.|...|..+..+..+... ...+..+.+-+.... -+||.
T Consensus 62 ~~iAVL~r~~---~~~~~l~~~L~~~gi~~~~l~~~~~~------------------~~~~v~v~t~~~~KG---lEf~~ 117 (174)
T 3dmn_A 62 DTTAIIGKSL---AECEALTKALKARGEQVTLIQTENQR------------------LAPGVIVVPSFLAKG---LEFDA 117 (174)
T ss_dssp CCEEEEESSH---HHHHHHHHHHHTTTCCEEECSSCC-C------------------CCSSEEEEEGGGCTT---CCEEE
T ss_pred CcEEEEecCH---HHHHHHHHHHHHcCCcceeecccccc------------------cCCCeEEEEccccCC---cCCCE
Confidence 4577777543 23455666777777777766554321 112334443343433 47999
Q ss_pred EEEcCCC
Q 027785 89 LVIPGGR 95 (219)
Q Consensus 89 liipGG~ 95 (219)
|++++-.
T Consensus 118 V~~~~~~ 124 (174)
T 3dmn_A 118 VIVWNAN 124 (174)
T ss_dssp EEEETCB
T ss_pred EEEecCC
Confidence 9999854
No 150
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=29.05 E-value=94 Score=22.05 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=30.0
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
.+-|++|+....| .++.+.+.++.+.++|.++.+|+..
T Consensus 109 ~~~Dvvi~iS~sG-----~t~~~~~~~~~ak~~g~~vi~iT~~ 146 (188)
T 1tk9_A 109 NEKDVLIGISTSG-----KSPNVLEALKKAKELNMLCLGLSGK 146 (188)
T ss_dssp CTTCEEEEECSSS-----CCHHHHHHHHHHHHTTCEEEEEEEG
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3568888776544 4688999999999999999998874
No 151
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=28.98 E-value=60 Score=23.29 Aligned_cols=91 Identities=8% Similarity=-0.043 Sum_probs=51.6
Q ss_pred CCEEEEEecCCCCc---hhhHHHHHHHHhCCC---eEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCC
Q 027785 8 KRSVLLLCGDYMED---YEAMVPFQALLAFGV---SVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI 81 (219)
Q Consensus 8 ~~kv~il~~~g~~~---~e~~~~~~~l~~ag~---~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~ 81 (219)
+.||+|+.....+. .-+.+..+.|.+.|. +++++..-+. .-+++....-..
T Consensus 10 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGa---------------------fEiP~aa~~la~-- 66 (158)
T 1di0_A 10 SFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGA---------------------YEIPLHAKTLAR-- 66 (158)
T ss_dssp CEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSG---------------------GGHHHHHHHHHH--
T ss_pred CCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH---------------------HHHHHHHHHHHh--
Confidence 57999999874443 456677888888774 3555544321 112222211111
Q ss_pred CCCCccEEEEcCCC--Ccc--c-ccCChHHHHHHHHHHhcCCeEEE
Q 027785 82 DPTKYDGLVIPGGR--APE--Y-LAMNDSVIDLVRKFSNSGKTIAS 122 (219)
Q Consensus 82 ~~~~~D~liipGG~--~~~--~-~~~~~~l~~~l~~~~~~~~~v~~ 122 (219)
..+||+++..|-- |.- + +-.+.....+.+-..+.++||..
T Consensus 67 -~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~Gl~~v~L~~~vPV~~ 111 (158)
T 1di0_A 67 -TGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLS 111 (158)
T ss_dssp -TSCCSEEEEEEECCCCSSBCCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred -cCCCCEEEEeeccccCCCcHHHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 2479999998864 321 1 11233455566666678888764
No 152
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=28.89 E-value=16 Score=28.07 Aligned_cols=36 Identities=6% Similarity=-0.017 Sum_probs=23.2
Q ss_pred CCEEEEEecCCC--C---chhhHHHHHHHHhCCCeEEEecC
Q 027785 8 KRSVLLLCGDYM--E---DYEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 8 ~~kv~il~~~g~--~---~~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
+++|++++.+-. + ..-+.++.+.+.+.|+++.+...
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~ 45 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAP 45 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCC
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 578999986422 2 12234555666677999988765
No 153
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=28.72 E-value=61 Score=24.44 Aligned_cols=41 Identities=10% Similarity=0.156 Sum_probs=24.1
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHH-------hcCCeEEEEehh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFS-------NSGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~-------~~~~~v~~ic~G 126 (219)
.++|+||+..-. ....-...+..||.+.. -.+|+++.++++
T Consensus 78 ~~AD~iI~~sP~--y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~ 125 (242)
T 1sqs_A 78 LESDIIIISSPV--YLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVA 125 (242)
T ss_dssp HHCSEEEEEEEE--CSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEE
T ss_pred HHCCEEEEEccc--cccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeC
Confidence 468999985321 11223566777777753 246776666654
No 154
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=28.47 E-value=46 Score=25.19 Aligned_cols=35 Identities=6% Similarity=-0.086 Sum_probs=21.8
Q ss_pred CEEEEEecCCCC---chhhHHHHHHHHhCCCeEEEecC
Q 027785 9 RSVLLLCGDYME---DYEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 9 ~kv~il~~~g~~---~~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
++|++++.+-.+ ..-+.++.+.+++.|+++.+...
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~ 39 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS 39 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC
Confidence 589999865222 22334455566677998877654
No 155
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=28.04 E-value=1e+02 Score=22.10 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=29.0
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
+=|++|+....| ..+.+.+.++.+.++|.++.+|+.-
T Consensus 116 ~~d~vI~iS~SG-----~t~~~~~~~~~ak~~g~~vI~IT~~ 152 (198)
T 2xbl_A 116 EGDVLIGYSTSG-----KSPNILAAFREAKAKGMTCVGFTGN 152 (198)
T ss_dssp TTCEEEEECSSS-----CCHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCeEEEEECC
Confidence 567777766444 4678999999999999999998863
No 156
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=28.03 E-value=1e+02 Score=22.23 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=30.2
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
.+-|++|+....| ..+.+++.++.+.++|.++.+|+.-
T Consensus 112 ~~~DvvI~iS~SG-----~t~~~i~~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 112 QPGDVLLAISTSG-----NSANVIQAIQAAHDREMLVVALTGR 149 (199)
T ss_dssp CTTCEEEEECSSS-----CCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3568888776544 5788999999999999999988773
No 157
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=27.83 E-value=65 Score=23.85 Aligned_cols=37 Identities=5% Similarity=-0.014 Sum_probs=29.8
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
.+||.+-+.-+....-.....+.|.+.|++++++-..
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~~g~~V~vv~T~ 44 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKSFFKEIRVVMTK 44 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTTTSSEEEEEECH
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEch
Confidence 5789999988777677778888898899999887553
No 158
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=27.65 E-value=99 Score=20.18 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=18.9
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEec
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC 42 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s 42 (219)
+||+|+ ++ +..........|...|+++..+.
T Consensus 7 ~~iliv--dd-~~~~~~~l~~~L~~~g~~v~~~~ 37 (136)
T 3kto_A 7 PIIYLV--DH-QKDARAALSKLLSPLDVTIQCFA 37 (136)
T ss_dssp CEEEEE--CS-CHHHHHHHHHHHTTSSSEEEEES
T ss_pred CeEEEE--cC-CHHHHHHHHHHHHHCCcEEEEeC
Confidence 455554 32 33345566777888899887654
No 159
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=27.59 E-value=1.9e+02 Score=21.56 Aligned_cols=38 Identities=11% Similarity=-0.078 Sum_probs=25.5
Q ss_pred CCEEEEEecC---CCCchhhHHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
+++|++++.+ .|...-+.++.+.+.+.|+++.+.....
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 48 (277)
T 3cs3_A 8 TNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKK 48 (277)
T ss_dssp CCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTT
T ss_pred CcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 6789999864 2333344556667778899988776543
No 160
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=27.52 E-value=2.3e+02 Score=22.75 Aligned_cols=41 Identities=5% Similarity=0.003 Sum_probs=26.6
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHh---cCCeEEEEehh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN---SGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~---~~~~v~~ic~G 126 (219)
.++|.+++....-.. ...+.+..|+.+... ++|.++.+|+.
T Consensus 302 ~~~d~ii~gsp~~~~--~~~~~~~~~l~~l~~~~l~~k~~~~f~t~ 345 (402)
T 1e5d_A 302 SDAGAVIVGSPTHNN--GILPYVAGTLQYIKGLRPQNKIGGAFGSF 345 (402)
T ss_dssp HTCSEEEEECCCBTT--BCCHHHHHHHHHHHHTCCCSCEEEEEEEE
T ss_pred HHCCEEEEECCccCC--CchHHHHHHHHHhhhcccCCCEEEEEEcC
Confidence 369999997543111 124567777777654 67888888763
No 161
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=27.20 E-value=48 Score=24.09 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=24.2
Q ss_pred CEEEEEecC------CCCchhhHHHHHHHHhCCCeEEEec
Q 027785 9 RSVLLLCGD------YMEDYEAMVPFQALLAFGVSVDAAC 42 (219)
Q Consensus 9 ~kv~il~~~------g~~~~e~~~~~~~l~~ag~~v~~~s 42 (219)
+|++|+..- ...+..-..+...|...|+++....
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~ 43 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGF 43 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEE
Confidence 489888842 3555666778888999998775543
No 162
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=27.03 E-value=1.3e+02 Score=19.53 Aligned_cols=32 Identities=16% Similarity=-0.090 Sum_probs=19.9
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHh-CCCeEEEecC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLA-FGVSVDAACP 43 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~-ag~~v~~~s~ 43 (219)
+||+|+=- +..........|.. .|+++..++.
T Consensus 5 ~~ilivdd---~~~~~~~l~~~L~~~~~~~v~~~~~ 37 (140)
T 3lua_A 5 GTVLLIDY---FEYEREKTKIIFDNIGEYDFIEVEN 37 (140)
T ss_dssp CEEEEECS---CHHHHHHHHHHHHHHCCCEEEEECS
T ss_pred CeEEEEeC---CHHHHHHHHHHHHhccCccEEEECC
Confidence 36655532 33345566778888 8998875543
No 163
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=26.98 E-value=61 Score=25.01 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=27.8
Q ss_pred CCEEEEEecC-CCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
.+||.+...+ ...+.........|+.+||++..+..+
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~ 160 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD 160 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC
Confidence 3466666654 556677888889999999999888664
No 164
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=26.66 E-value=53 Score=22.60 Aligned_cols=36 Identities=11% Similarity=-0.054 Sum_probs=25.1
Q ss_pred CEEEEEecC-CCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 9 RSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 9 ~kv~il~~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+||.+...+ .............|+.+||++..+...
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~ 40 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL 40 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 466665543 345556667778999999999887653
No 165
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=26.66 E-value=34 Score=26.39 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=24.3
Q ss_pred CCEEEEEecCCCC---chhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYME---DYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~---~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
..+|++++.+-.+ ..-+.++.+.+++.|+++.+....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 42 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPP 42 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCS
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCC
Confidence 5689999876422 223445556666779999887654
No 166
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=26.62 E-value=19 Score=27.23 Aligned_cols=38 Identities=18% Similarity=0.026 Sum_probs=25.5
Q ss_pred CCEEEEEecCCCC---chhhHHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCGDYME---DYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~~g~~---~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
+++|++++.+-.+ ..=+.++.+.+.+.|+++.+...+.
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 42 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDD 42 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5789999976332 2234455566777899998876543
No 167
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=26.57 E-value=1.1e+02 Score=21.88 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=30.1
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
.+-|++|+....| ..+.+.+.++.+.++|.++.+|+.-
T Consensus 108 ~~~DvvI~iS~SG-----~t~~~i~~~~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 108 HAGDVLLAISTRG-----NSRDIVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_dssp CTTCEEEEECSSS-----CCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3567888776544 5788999999999999999988873
No 168
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=26.49 E-value=1.7e+02 Score=20.60 Aligned_cols=36 Identities=6% Similarity=-0.016 Sum_probs=28.5
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~ 125 (219)
+-|++|+....| ..+.+.+.++.+.++|.++.+|..
T Consensus 87 ~~d~~i~iS~sG-----~t~~~~~~~~~ak~~g~~vi~IT~ 122 (187)
T 3sho_A 87 PTDLMIGVSVWR-----YLRDTVAALAGAAERGVPTMALTD 122 (187)
T ss_dssp TTEEEEEECCSS-----CCHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCCEEEEeC
Confidence 457877766544 468899999999999999988876
No 169
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=26.44 E-value=1.3e+02 Score=23.33 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=31.8
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (219)
+||+|--=||+....+..+.+.|+..+ +|.+++|+..
T Consensus 2 M~ILlTNDDGi~apGi~aL~~~L~~~g-~V~VVAP~~~ 38 (254)
T 2v4n_A 2 MRILLSNDDGVHAPGIQTLAKALREFA-DVQVVAPDRN 38 (254)
T ss_dssp CEEEEECSSCTTCHHHHHHHHHHTTTS-EEEEEEESSC
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhCC-cEEEEeeCCC
Confidence 477777778999999999999999887 8999999754
No 170
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=25.37 E-value=1.9e+02 Score=23.69 Aligned_cols=96 Identities=17% Similarity=0.074 Sum_probs=53.5
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceecc-ccCCccccccCccCCCCCCcc
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSE-TRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~i~~~~~~~~~~~~~~D 87 (219)
+|+.|+.-++.... .....+.|..+|+++.++....+...+ .+.. .... ..+.+......|
T Consensus 44 ~rvlIVtd~~v~~~-~~~v~~~L~~~g~~~~~~~~~~gE~~k------------t~~~v~~~~-----~~l~~~~~~r~d 105 (368)
T 3qbe_A 44 HKVAVVHQPGLAET-AEEIRKRLAGKGVDAHRIEIPDAEAGK------------DLPVVGFIW-----EVLGRIGIGRKD 105 (368)
T ss_dssp SEEEEEECGGGHHH-HHHHHHHHHHTTCEEEEEECCSGGGGG------------BHHHHHHHH-----HHHHHHTCCTTC
T ss_pred CEEEEEECccHHHH-HHHHHHHHHhcCCcceEEEeCCCCCCC------------CHHHHHHHH-----HHHHHcCCCCCc
Confidence 57777776665543 455667788889887655432210000 0000 0000 001111223578
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (219)
Q Consensus 88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~ 128 (219)
.||-.||..+. .+-+++...+.+|.++..|.+-..
T Consensus 106 ~IIavGGGsv~------D~ak~~Aa~~~rgip~i~IPTTll 140 (368)
T 3qbe_A 106 ALVSLGGGAAT------DVAGFAAATWLRGVSIVHLPTTLL 140 (368)
T ss_dssp EEEEEESHHHH------HHHHHHHHHGGGCCEEEEEECSHH
T ss_pred EEEEECChHHH------HHHHHHHHHhccCCcEEEECCCCc
Confidence 88888875432 355666667888999999998654
No 171
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=25.30 E-value=1e+02 Score=19.82 Aligned_cols=57 Identities=11% Similarity=0.122 Sum_probs=39.6
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHH---hCcccCCceEe
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA---AADVVKGRKCT 142 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La---~aGlL~g~~~t 142 (219)
+.|+.++.-|.+...+..+..+.+.|+.+.+.|. -..+|.-+.-.- ...|++|-++.
T Consensus 29 ~~~v~vv~~g~gv~~~~~~~~~~~~i~~l~~~gV-~~~~C~~s~~~~gi~~~~L~~~v~vv 88 (108)
T 2pd2_A 29 DAEIEVVLHQSAIKALLKDSDTRSIIEDLIKKNI-LIVGCENSIRSQNLSHDQLIPGIKIV 88 (108)
T ss_dssp TCEEEEEECGGGGGGGBTTCTTHHHHHHHHHTTC-EEEEEHHHHHHTTCCGGGBCTTCEEE
T ss_pred CCeEEEEEcChHHHHHHcCchHHHHHHHHHHCcC-EEEecHHHHHHcCCCHHHcCCCCEEe
Confidence 6888888888887665566678889998888776 556888764222 23466666555
No 172
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=25.23 E-value=29 Score=27.33 Aligned_cols=37 Identities=3% Similarity=-0.142 Sum_probs=22.9
Q ss_pred CCEEEEEecCCCC---chhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYME---DYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~---~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+++|++++.+-.+ ..-+.++.+.+.+.|+++.+....
T Consensus 5 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~ 44 (332)
T 2rjo_A 5 QTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTE 44 (332)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEECT
T ss_pred ccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 5789999975322 122344455666778988776543
No 173
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=25.15 E-value=1.1e+02 Score=22.21 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=30.0
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
.+-|++|+....| ..+.+++.++.+.++|.++.+|+.-
T Consensus 88 ~~~DvvI~iS~SG-----~t~~~i~~~~~ak~~g~~vI~IT~~ 125 (200)
T 1vim_A 88 TDQDVLVGISGSG-----ETTSVVNISKKAKDIGSKLVAVTGK 125 (200)
T ss_dssp CTTCEEEEECSSS-----CCHHHHHHHHHHHHHTCEEEEEESC
T ss_pred CCCCEEEEEeCCC-----CcHHHHHHHHHHHHCCCeEEEEECC
Confidence 3568888876554 4688999999999999999988763
No 174
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=24.93 E-value=1.3e+02 Score=21.31 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=29.5
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
.+-|++|+....| ..+.+.+.++.+.++|.++.+|+.-
T Consensus 78 ~~~d~vI~iS~sG-----~t~~~~~~~~~ak~~g~~vi~IT~~ 115 (186)
T 1m3s_A 78 AEGDLVIIGSGSG-----ETKSLIHTAAKAKSLHGIVAALTIN 115 (186)
T ss_dssp CTTCEEEEECSSS-----CCHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCEEEEEcCCC-----CcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3567777776544 4578999999999999999988873
No 175
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=24.90 E-value=1.3e+02 Score=22.32 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCCEEEEEecCCCCch-hhHHHHHHHHhCCCeEEEecCCC
Q 027785 7 GKRSVLLLCGDYMEDY-EAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 7 ~~~kv~il~~~g~~~~-e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
..|||.+-+.-+.... ......+.|.+.|++++++-...
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~~g~eV~vv~T~~ 45 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVELGAKVTPFVTHT 45 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhhCCCEEEEEEChh
Confidence 3689998888777666 77788899999999998876544
No 176
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=24.68 E-value=1.2e+02 Score=22.10 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=30.5
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
.+-|++|+....| ..+.+++.++...++|.++.+++..
T Consensus 113 ~~~Dvvi~iS~SG-----~t~~~~~~~~~ak~~g~~vi~iT~~ 150 (201)
T 3trj_A 113 NEDDILLVITTSG-----DSENILSAVEEAHDLEMKVIALTGG 150 (201)
T ss_dssp CTTCEEEEECSSS-----CCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCcEEEEECC
Confidence 3568888876544 4788999999999999999999863
No 177
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=24.56 E-value=90 Score=23.59 Aligned_cols=37 Identities=11% Similarity=-0.052 Sum_probs=24.5
Q ss_pred CCEEEEEecC--C---CCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGD--Y---MEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~--g---~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+++|++++.+ - |...-+.++.+.+.+.|+++.+....
T Consensus 19 ~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 60 (296)
T 3brq_A 19 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGK 60 (296)
T ss_dssp CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCT
T ss_pred CceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999865 2 22233455666777889998877543
No 178
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=24.17 E-value=1e+02 Score=22.31 Aligned_cols=38 Identities=11% Similarity=-0.033 Sum_probs=30.2
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
.|||.+-+.-+..........+.|.+.|++++++-...
T Consensus 5 ~k~IllgvTGs~aa~k~~~ll~~L~~~g~~V~vv~T~~ 42 (175)
T 3qjg_A 5 GENVLICLCGSVNSINISHYIIELKSKFDEVNVIASTN 42 (175)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHTTTCSEEEEEECTG
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 47999999887777777778888888999998875543
No 179
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=24.13 E-value=2.3e+02 Score=21.80 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=31.0
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCC
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (219)
||++--=||+....+..+.+.|+..| +|.+++|+..
T Consensus 2 ~ILlTNDDGi~apGi~aL~~~l~~~g-~V~VVAP~~~ 37 (247)
T 1j9j_A 2 RILVTNDDGIQSKGIIVLAELLSEEH-EVFVVAPDKE 37 (247)
T ss_dssp EEEEECSSCTTCHHHHHHHHHHTTTS-EEEEEEESSC
T ss_pred eEEEEcCCCCCcHhHHHHHHHHHhCC-CEEEEecCCC
Confidence 67766678999999999999999988 8999999754
No 180
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=24.07 E-value=1.1e+02 Score=22.37 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=29.2
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
+-|++|+....| .++.+++.++.+.++|.++.+|+.-
T Consensus 131 ~~DvvI~iS~SG-----~t~~~i~~~~~ak~~G~~vIaIT~~ 167 (212)
T 2i2w_A 131 EGDVLLGISTSG-----NSANVIKAIAAAREKGMKVITLTGK 167 (212)
T ss_dssp TTCEEEEECSSS-----CCHHHHHHHHHHHHHTCEEEEEEET
T ss_pred CCCEEEEEECCC-----CCHHHHHHHHHHHHCCCeEEEEECC
Confidence 567777766444 4688999999999999999999874
No 181
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=23.72 E-value=31 Score=24.51 Aligned_cols=69 Identities=16% Similarity=0.056 Sum_probs=42.0
Q ss_pred cCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcc
Q 027785 116 SGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGG 195 (219)
Q Consensus 116 ~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~ 195 (219)
.|-.+++.+.|..+-| .=.+|-++..-|....+-.. .-..|.|+++=++-.-+.+++..|++.+..
T Consensus 66 ~GIliCGTGiG~siaA--NKv~GIRAAl~~d~~sA~~a------------r~hNnANVL~lG~rvig~~lA~~iv~~fL~ 131 (148)
T 4em8_A 66 FGVLICGTGIGMSIAA--NRHKNIRAALCSSTMLAKLS------------REHNDANVLCFGSRYIDPDTAQSVLYTFMT 131 (148)
T ss_dssp EEEEEESSSHHHHHHH--TTSTTCCEEECSSHHHHHHH------------HHHHCCCEEEEETTTSCHHHHHHHHHHHHH
T ss_pred eEEEEccCcHHHHHHH--hcCCCeEEEEeCCHHHHHHH------------HHhCCCcEEEEchhhhCHHHHHHHHHHHHc
Confidence 3444444445554444 44566666665553322211 024678888888888889999999997766
Q ss_pred ccc
Q 027785 196 TIT 198 (219)
Q Consensus 196 ~~~ 198 (219)
...
T Consensus 132 t~F 134 (148)
T 4em8_A 132 TAF 134 (148)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 182
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=23.66 E-value=1.1e+02 Score=22.94 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=31.5
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
.+-|++|+....| .++.+++.++.+.++|.++.+|+.-.
T Consensus 107 ~~~Dv~I~iS~SG-----~t~~~i~~~~~Ak~~G~~vI~IT~~~ 145 (243)
T 3cvj_A 107 TNKDVIMIISNSG-----RNTVPVEMAIESRNIGAKVIAMTSMK 145 (243)
T ss_dssp CTTCEEEEECSSC-----CSHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4568888876544 57889999999999999999998764
No 183
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=23.51 E-value=2.4e+02 Score=21.67 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=31.1
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCC
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (219)
||+|--=||+....+..+.+.|+..| +|.++.|+..
T Consensus 2 ~ILlTNDDGi~apGi~aL~~~l~~~g-~V~VVAP~~~ 37 (244)
T 2e6c_A 2 RILVTNDDGIYSPGLWALAEAASQFG-EVFVAAPDTE 37 (244)
T ss_dssp EEEEECSSCTTCHHHHHHHHHHTTTS-EEEEEEECSS
T ss_pred eEEEEcCCCCCcHhHHHHHHHHHhCC-CEEEEecCCC
Confidence 67766678999999999999999988 8999999764
No 184
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=23.26 E-value=1.6e+02 Score=19.22 Aligned_cols=36 Identities=14% Similarity=-0.000 Sum_probs=24.2
Q ss_pred CCEEEEEecCCCCchhh-HHHHHHHHhCCCeEEEecC
Q 027785 8 KRSVLLLCGDYMEDYEA-MVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~-~~~~~~l~~ag~~v~~~s~ 43 (219)
++||.++...|..-+=+ ....+.+...|+++++...
T Consensus 3 mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~ 39 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAF 39 (106)
T ss_dssp CEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred CcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 46899999998876522 2345566677887766544
No 185
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=23.19 E-value=52 Score=23.57 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=51.7
Q ss_pred CCEEEEEecCCCCc---hhhHHHHHHHHhCC-C---eEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccC
Q 027785 8 KRSVLLLCGDYMED---YEAMVPFQALLAFG-V---SVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDE 80 (219)
Q Consensus 8 ~~kv~il~~~g~~~---~e~~~~~~~l~~ag-~---~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 80 (219)
..||+|+.....+. .-+.+..+.|.+.| . +++++...+. .-+++....-..
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGa---------------------fEiP~aa~~la~- 69 (156)
T 3nq4_A 12 DARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGA---------------------YELPLATEALAK- 69 (156)
T ss_dssp TCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESST---------------------TTHHHHHHHHHH-
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcH---------------------HHHHHHHHHHHh-
Confidence 56899999875443 45667888899888 4 5666654331 112222222111
Q ss_pred CCCCCccEEEEcCCC--Cc--cc-ccCChHHHHHHHHHHhcCCeEE
Q 027785 81 IDPTKYDGLVIPGGR--AP--EY-LAMNDSVIDLVRKFSNSGKTIA 121 (219)
Q Consensus 81 ~~~~~~D~liipGG~--~~--~~-~~~~~~l~~~l~~~~~~~~~v~ 121 (219)
..+||+++..|-- |. .+ +-.+.....+.+-..+.+.||.
T Consensus 70 --~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~Gl~~v~L~~~vPV~ 113 (156)
T 3nq4_A 70 --SGKYDAVVALGTVIRGGTAHFEYVAGGASNGLASVAQDSGVPVA 113 (156)
T ss_dssp --HCSCSEEEEEEEEECCSSTHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred --cCCCCEEEEeeeeecCCchHHHHHHHHHHHHHHHHHhccCCCEE
Confidence 2469999988753 31 11 1223444555555666788865
No 186
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=23.08 E-value=99 Score=24.28 Aligned_cols=37 Identities=8% Similarity=-0.165 Sum_probs=24.5
Q ss_pred CCEEEEEecC---CCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+++|++++.+ .|...-+.++.+.+.+.|+++.+....
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 107 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTD 107 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5689999864 233333445666677789998776554
No 187
>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S 1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S 1wuk_S 1wul_S 1e3d_A*
Probab=23.04 E-value=72 Score=25.00 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=31.4
Q ss_pred CCCccEEEEcCCCCccc-----ccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 83 PTKYDGLVIPGGRAPEY-----LAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~-----~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
+.. |+++|-|...... .......+++++++.++.|.|.|+++=+
T Consensus 67 p~~-Dil~VeG~V~~~~~g~~~~~~g~~~l~~~~e~~~~ak~VIAvGsCA 115 (267)
T 1wui_S 67 PHG-FIAVVEGGIPTAANGIYGKVANHTMLDICSRILPKAQAVIAYGTCA 115 (267)
T ss_dssp TTC-EEEEEESBEECGGGGTTBEETTEEHHHHHHHHGGGSSEEEEESHHH
T ss_pred CCC-eEEEEeCCCccCCCcceeecCChHHHHHHHHHhccCCEEEEeeecc
Confidence 346 9999998642110 1113478999999999999999997744
No 188
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=22.80 E-value=55 Score=25.24 Aligned_cols=37 Identities=14% Similarity=-0.085 Sum_probs=23.5
Q ss_pred CCEEEEEecCC--------CCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDY--------MEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g--------~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+++|++++.+. |...=+.++.+.+.+.|+++.+....
T Consensus 22 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 66 (305)
T 3huu_A 22 TLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSE 66 (305)
T ss_dssp CCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCS
T ss_pred CCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67899998761 11222345556666779998876544
No 189
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=22.70 E-value=1.3e+02 Score=21.11 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=29.5
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
.+-|++|+....| ..+.+.+.++.+.++|.++.+|+.-
T Consensus 95 ~~~d~vI~iS~sG-----~t~~~~~~~~~ak~~g~~vi~IT~~ 132 (183)
T 2xhz_A 95 TPQDVVIAISNSG-----ESSEITALIPVLKRLHVPLICITGR 132 (183)
T ss_dssp CTTCEEEEECSSS-----CCHHHHHHHHHHHTTTCCEEEEESC
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCCEEEEECC
Confidence 3567888776544 4688999999999999888888763
No 190
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=22.65 E-value=54 Score=22.75 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=24.1
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHh-cCCeEEEEehh
Q 027785 83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN-SGKTIASICHG 126 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~-~~~~v~~ic~G 126 (219)
..+||.|++....- .....+.+..||.+... ++++++..++|
T Consensus 74 l~~~d~iilG~P~~--~g~~~~~~~~fl~~~~~~~~k~~~~~t~g 116 (151)
T 3edo_A 74 YNNYDLILIGSPVW--SGYPATPIKTLLDQMKNYRGEVASFFTSA 116 (151)
T ss_dssp GGGCSEEEEEEEEE--TTEECTHHHHHHHHTTTCCSEEEEEEECS
T ss_pred HhhCCEEEEEccee--cccccHHHHHHHHhchhcCCEEEEEEEeC
Confidence 45899999853211 11235678888887643 34444444443
No 191
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=22.64 E-value=1.3e+02 Score=19.76 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=24.8
Q ss_pred CCccEEEEcCCCCcccccCChH--HHHHHHHHHh--cCCeEEEEeh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDS--VIDLVRKFSN--SGKTIASICH 125 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~--l~~~l~~~~~--~~~~v~~ic~ 125 (219)
.++|.|++....-.. ...+. +..|+.+... ++|+++.+++
T Consensus 45 ~~~d~vi~g~p~y~~--~~~~~~~~~~fl~~l~~~l~~k~~~~~~t 88 (137)
T 2fz5_A 45 ASKDVILLGCPAMGS--EELEDSVVEPFFTDLAPKLKGKKVGLFGS 88 (137)
T ss_dssp HTCSEEEEECCCBTT--TBCCHHHHHHHHHHHGGGCSSCEEEEEEE
T ss_pred hcCCEEEEEccccCC--CCCCHHHHHHHHHHhhhhcCCCEEEEEEe
Confidence 368999885432111 12344 7888887644 6788877775
No 192
>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1
Probab=22.60 E-value=72 Score=25.71 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=31.5
Q ss_pred CCCccEEEEcCCCCccc-----ccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785 83 PTKYDGLVIPGGRAPEY-----LAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (219)
Q Consensus 83 ~~~~D~liipGG~~~~~-----~~~~~~l~~~l~~~~~~~~~v~~ic~G~ 127 (219)
+.. |+++|-|...... .-.....+++++++.++.|.|.++++=+
T Consensus 117 pr~-DIliVeGsV~~~~~g~~~~~~g~~~l~~l~e~~~~ak~VIAvGsCA 165 (317)
T 1h2a_S 117 PHG-FIAVVEGGIPTAANGIYGKVANHTMLDICSRILPKAQAVIAYGTCA 165 (317)
T ss_dssp TTC-CEEEEESBEECGGGGTTBEETTEEHHHHHHHHGGGCSEEEEESHHH
T ss_pred CCC-eEEEEeCCCcCCCCCcceeeCChHHHHHHHHHhccCCEEEEecccc
Confidence 345 9999998642110 1112678999999999999999997744
No 193
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=22.37 E-value=1.5e+02 Score=22.18 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=28.8
Q ss_pred CCEEEEEecCCCCchh-hHHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCGDYMEDYE-AMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e-~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
.|||.+-+.-+..... .....+.|.+.|++|.++-...
T Consensus 5 ~k~IllgiTGsiaayk~~~~ll~~L~~~g~eV~vv~T~~ 43 (207)
T 3mcu_A 5 GKRIGFGFTGSHCTYEEVMPHLEKLIAEGAEVRPVVSYT 43 (207)
T ss_dssp TCEEEEEECSCGGGGTTSHHHHHHHHHTTCEEEEEECC-
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHHhCCCEEEEEEehH
Confidence 5799988887666554 6788888999999998775543
No 194
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=22.33 E-value=1.5e+02 Score=23.17 Aligned_cols=38 Identities=18% Similarity=-0.059 Sum_probs=26.5
Q ss_pred CCEEEEEecC---CCCchhhHHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
+++|++++.+ .|...=+.++.+.+.+.||++.+.....
T Consensus 62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 102 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNSHY 102 (339)
T ss_dssp -CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5679999864 3444455667778888999998776543
No 195
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=22.09 E-value=87 Score=24.44 Aligned_cols=115 Identities=16% Similarity=0.049 Sum_probs=63.2
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCC--C-CC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID--P-TK 85 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~--~-~~ 85 (219)
++|.|++.+|-+.-|-......|...|++|.++-+... ..... .. .. ......|..+..+ ++... . .+
T Consensus 80 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~V~~~~~~-~~~~~-~~----~~-~~~~~~g~~~~~~--~~~~~~~l~~~ 150 (265)
T 2o8n_A 80 PTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRP-NKPLF-TG----LV-TQCQKMDIPFLGE--MPPEPMMVDEL 150 (265)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCSCC-SSHHH-HH----HH-HHHHHTTCCBCSS--CCSSHHHHHHH
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCcEEEEEeCCC-CCHHH-HH----HH-HHHHHcCCcEEec--ccchhhhccCC
Confidence 58999999999999999999999999999999865421 00000 00 00 0001123222211 11000 0 12
Q ss_pred ccEEEEcCC--CCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc
Q 027785 86 YDGLVIPGG--RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (219)
Q Consensus 86 ~D~liipGG--~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG 134 (219)
+|+||= +- .|-.. .-.+.+.++|+...+.+++|.+|..=+-+=+.+|
T Consensus 151 ~dlIID-ALfGtGl~~-~l~~~~~~lI~~iN~~~~~VvAVDIPSGldadtG 199 (265)
T 2o8n_A 151 YELVVD-AIFGFSFKG-DVREPFHSILSVLSGLTVPIASIDIPSGWDVEKG 199 (265)
T ss_dssp CSEEEE-ESCCTTCCC-CCCTTHHHHHHHHHTCSSCEEEESSCTTSBTTTB
T ss_pred CcEEEE-eeccCCCCC-CCcHHHHHHHHHHHhcCCCEEEEeCCCCcccCCC
Confidence 444332 22 22111 1234566666666677889999987665555555
No 196
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=22.09 E-value=41 Score=25.68 Aligned_cols=36 Identities=6% Similarity=-0.082 Sum_probs=22.4
Q ss_pred CEEEEEecCCCC---chhhHHHHHHHHhCCCeEEEecCC
Q 027785 9 RSVLLLCGDYME---DYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 9 ~kv~il~~~g~~---~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
++|++++.+-.+ ..-+.++.+.+++.|+++.+....
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~ 40 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDSQ 40 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECT
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecCC
Confidence 579999865322 223344555667779998776543
No 197
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=22.04 E-value=94 Score=23.62 Aligned_cols=37 Identities=14% Similarity=-0.095 Sum_probs=24.0
Q ss_pred CCEEEEEecCCCC---chhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYME---DYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~---~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+++|++++.+-.+ ..-+.++.+.+.+.|+++.+....
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 47 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGC 47 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5689999865322 223345566677789998876554
No 198
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=21.96 E-value=57 Score=24.49 Aligned_cols=37 Identities=11% Similarity=0.009 Sum_probs=27.3
Q ss_pred CEEEEEecC-CCCchhhHHHHHHHHhCCCeEEEecCCC
Q 027785 9 RSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 9 ~kv~il~~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
.||.+...+ ...+.........|+.+||++..+..+-
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v 130 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDV 130 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSC
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCC
Confidence 466665544 4556777788899999999998886653
No 199
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=21.88 E-value=1.3e+02 Score=23.17 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=30.3
Q ss_pred CCEEEEEecCCCCch--hhHHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCGDYMEDY--EAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~~g~~~~--e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
.+|+.||+.||.... ++......++..|+.+..++...
T Consensus 128 ~~~~iillTDG~~~d~~~~~~~~~~l~~~gv~i~~igiG~ 167 (281)
T 4hqf_A 128 ANQLVVILTDGIPDSIQDSLKESRKLSDRGVKIAVFGIGQ 167 (281)
T ss_dssp CEEEEEEEESSCCSCHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CCEEEEEEecCCCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 468999999997654 67778888889999888887653
No 200
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=21.81 E-value=1.4e+02 Score=23.41 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=20.4
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEE
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIAS 122 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ 122 (219)
.+.|+|+|+-.. ..-.+++..+.++|+.|..
T Consensus 64 ~~~D~V~i~tp~--------~~h~~~~~~al~~G~~v~~ 94 (319)
T 1tlt_A 64 ASCDAVFVHSST--------ASHFDVVSTLLNAGVHVCV 94 (319)
T ss_dssp TTCSEEEECSCT--------THHHHHHHHHHHTTCEEEE
T ss_pred cCCCEEEEeCCc--------hhHHHHHHHHHHcCCeEEE
Confidence 478999987422 2335566667778887663
No 201
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=21.64 E-value=42 Score=25.23 Aligned_cols=34 Identities=15% Similarity=-0.022 Sum_probs=22.8
Q ss_pred EEEEEecCC---CCchhhHHHHHHHHhCCCeEEEecC
Q 027785 10 SVLLLCGDY---MEDYEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 10 kv~il~~~g---~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
||++++.+- |...-+.++.+.+++.|+++.+...
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~ 38 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRST 38 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCC
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 789988642 2233345566677778999988764
No 202
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=21.56 E-value=1.7e+02 Score=23.04 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=31.1
Q ss_pred EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCC
Q 027785 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (219)
Q Consensus 10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (219)
||+|--=||+....+..+.+.|+..| +|.+++|+..
T Consensus 2 ~ILlTNDDGi~ApGi~aL~~aL~~~g-~V~VVAP~~~ 37 (280)
T 1l5x_A 2 KILVTNDDGVHSPGLRLLYQFALSLG-DVDVVAPESP 37 (280)
T ss_dssp EEEEECSSCTTCHHHHHHHHHHGGGS-EEEEEEESSC
T ss_pred eEEEEcCCCCCcHhHHHHHHHHHhCC-CEEEEecCCC
Confidence 67766678999999999999999988 8999999754
No 203
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=21.53 E-value=66 Score=24.58 Aligned_cols=35 Identities=11% Similarity=-0.023 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCC---chhhHHHHHHHHhCCCeEEEec
Q 027785 8 KRSVLLLCGDYME---DYEAMVPFQALLAFGVSVDAAC 42 (219)
Q Consensus 8 ~~kv~il~~~g~~---~~e~~~~~~~l~~ag~~v~~~s 42 (219)
+++|++++.+.-+ ..-+.++.+.+++.|+++.++.
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 41 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG 41 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC
Confidence 5789999865322 2223455566677898887654
No 204
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=21.52 E-value=55 Score=23.57 Aligned_cols=89 Identities=10% Similarity=0.004 Sum_probs=50.8
Q ss_pred CCEEEEEecCCCCc---hhhHHHHHHHHhCCC-eEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCC
Q 027785 8 KRSVLLLCGDYMED---YEAMVPFQALLAFGV-SVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP 83 (219)
Q Consensus 8 ~~kv~il~~~g~~~---~e~~~~~~~l~~ag~-~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 83 (219)
+.||+|+.....+. .-+.+..+.|.+.|. +++++..-+ ..-+++.... +.
T Consensus 17 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~~i~v~~VPG---------------------afEiP~aak~-la---- 70 (160)
T 2c92_A 17 GVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLG---------------------AIEIPVVAQE-LA---- 70 (160)
T ss_dssp TCCEEEEEECSSHHHHHHHHHHHHHHHHHTTCSCCEEEEESS---------------------GGGHHHHHHH-HH----
T ss_pred CCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCceEEEECCc---------------------HHHHHHHHHH-HH----
Confidence 46899999874443 456778888988886 455553322 1112222111 11
Q ss_pred CCccEEEEcCCC--Cc--c-cccCChHHHHHHHHHHhcCCeEEE
Q 027785 84 TKYDGLVIPGGR--AP--E-YLAMNDSVIDLVRKFSNSGKTIAS 122 (219)
Q Consensus 84 ~~~D~liipGG~--~~--~-~~~~~~~l~~~l~~~~~~~~~v~~ 122 (219)
..||+++..|-- |. . .+-.+.....+.+-..+.++||..
T Consensus 71 ~~yDavIaLG~VIrG~T~Hfd~Va~~vs~Gl~~v~L~~~vPV~~ 114 (160)
T 2c92_A 71 RNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIAN 114 (160)
T ss_dssp TSCSEEEEEEEEECCSSTHHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hcCCEEEEEeeeecCCchHHHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 149999988753 32 1 122234455666666677888764
No 205
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=21.15 E-value=96 Score=23.59 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=23.4
Q ss_pred CCEEEEEecCCCCc---hhhHHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCGDYMED---YEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~~g~~~---~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
+++|++++ +-.+. .=+.++.+.+++.|+++.+.....
T Consensus 12 ~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 51 (289)
T 3k9c_A 12 SRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSAVAP 51 (289)
T ss_dssp -CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBT
T ss_pred CCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 57899999 53221 223455566677899988876543
No 206
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=21.15 E-value=56 Score=25.53 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=21.4
Q ss_pred CCEEEEEecCCCCc---hhhHHHHHHHHhC-CCeEEEecCC
Q 027785 8 KRSVLLLCGDYMED---YEAMVPFQALLAF-GVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~~---~e~~~~~~~l~~a-g~~v~~~s~~ 44 (219)
+.+|++++.+ .+. .-+.++.+.+.+. |+++.+....
T Consensus 6 ~~~Igvi~~~-~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~ 45 (325)
T 2x7x_A 6 HFRIGVAQCS-DDSWRHKMNDEILREAMFYNGVSVEIRSAG 45 (325)
T ss_dssp CCEEEEEESC-CSHHHHHHHHHHHHHHTTSSSCEEEEEECT
T ss_pred CeEEEEEecC-CCHHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 6789999876 221 1122344455566 8888776543
No 207
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=21.01 E-value=62 Score=24.63 Aligned_cols=38 Identities=21% Similarity=-0.027 Sum_probs=25.7
Q ss_pred CCEEEEEecCCCC---chhhHHHHHHHHhCCCeEEEecCCC
Q 027785 8 KRSVLLLCGDYME---DYEAMVPFQALLAFGVSVDAACPGK 45 (219)
Q Consensus 8 ~~kv~il~~~g~~---~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (219)
+++|++++.+-.+ ..-+.++.+.+.+.|+++.+.....
T Consensus 8 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 48 (291)
T 3egc_A 8 SNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAE 48 (291)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 6789999976332 2234456667778899998876543
No 208
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=20.88 E-value=1.7e+02 Score=22.37 Aligned_cols=33 Identities=9% Similarity=-0.085 Sum_probs=19.7
Q ss_pred CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCC
Q 027785 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+||+|+=..|.- . ..+...|...|+++.++..+
T Consensus 12 m~I~iIG~tG~m--G-~~la~~l~~~g~~V~~~~r~ 44 (286)
T 3c24_A 12 KTVAILGAGGKM--G-ARITRKIHDSAHHLAAIEIA 44 (286)
T ss_dssp CEEEEETTTSHH--H-HHHHHHHHHSSSEEEEECCS
T ss_pred CEEEEECCCCHH--H-HHHHHHHHhCCCEEEEEECC
Confidence 588887432322 2 22345567889988877554
No 209
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=20.78 E-value=2e+02 Score=19.36 Aligned_cols=72 Identities=11% Similarity=0.058 Sum_probs=35.6
Q ss_pred CCccEEEEcCCC-Ccccc-cCChHHHHHHHHH--HhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEe
Q 027785 84 TKYDGLVIPGGR-APEYL-AMNDSVIDLVRKF--SNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWI 159 (219)
Q Consensus 84 ~~~D~liipGG~-~~~~~-~~~~~l~~~l~~~--~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~ 159 (219)
.++|.+++.... +...+ ..-..+.++++.. .-+++.++.++.|-.--. - -..+.....+.+++.|...+
T Consensus 45 ~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~~~~l~~~~~avfg~G~~~y~---~----~~~a~~~l~~~l~~~G~~~~ 117 (147)
T 2hna_A 45 PASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFGAIGIGSREYD---T----FCGAIDKLEAELKNSGAKQT 117 (147)
T ss_dssp CSEEEEEEECCTTTTCCTTSSCHHHHHHHHHHCCCTTEEEEEEESCCHHHHS---C----SSSCTTHHHHHHHHHTCEEC
T ss_pred ccCCeEEEEECccCCCCCChhHHHHHHHHHhhccccCCCEEEEEecccCCHH---H----HHHHHHHHHHHHHHcCCeEe
Confidence 468988885432 22222 2234566666653 234567777776653111 0 00111223455666677666
Q ss_pred cCC
Q 027785 160 EPE 162 (219)
Q Consensus 160 ~~~ 162 (219)
.+.
T Consensus 118 ~~~ 120 (147)
T 2hna_A 118 GET 120 (147)
T ss_dssp SSC
T ss_pred eee
Confidence 543
No 210
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=20.72 E-value=1.1e+02 Score=23.23 Aligned_cols=37 Identities=5% Similarity=-0.083 Sum_probs=23.9
Q ss_pred CCEEEEEecCCCC---chhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYME---DYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~---~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+++|++++.+-.+ ..-+.++.+.+++.|+++.+....
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 47 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTE 47 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 6789999975222 222345556677789998877543
No 211
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=20.69 E-value=91 Score=26.82 Aligned_cols=118 Identities=18% Similarity=0.134 Sum_probs=67.6
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD 87 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 87 (219)
.++|.|++-+|-+.-+-......|...|++|.++-.... ..... .. .. ......|..+.. ..++. ...++|
T Consensus 52 ~~~v~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~-~~~~~-~~----~~-~~~~~~g~~~~~-~~~~~-~~~~~d 122 (502)
T 3rss_A 52 DYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKK-KTPDC-EY----NY-GLYKKFGGKVVE-QFEPS-ILNEFD 122 (502)
T ss_dssp TCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSS-CCHHH-HH----HH-HHHHHTTCCEES-CCCGG-GGGGCS
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEECCC-CCHHH-HH----HH-HHHHhCCCceec-ccccc-cCCCCC
Confidence 468999999999998988889999999999998866532 00000 00 00 001112333321 11111 112455
Q ss_pred EEEEcC--CCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCccc
Q 027785 88 GLVIPG--GRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV 136 (219)
Q Consensus 88 ~liipG--G~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL 136 (219)
+|| =+ |.|-.. .-.+.+.++|+...+.+++|.+|..=+-+=+.+|-.
T Consensus 123 liV-DalfG~Gl~~-~l~~~~~~~i~~iN~~~~~vvAvDiPSGl~~dtG~~ 171 (502)
T 3rss_A 123 VVV-DAIFGTGLRG-EITGEYAEIINLVNKSGKVVVSVDVPSGIDSNTGKV 171 (502)
T ss_dssp EEE-EESCSTTCCS-CCCHHHHHHHHHHHTTCCEEEEESSCTTBCTTTCCB
T ss_pred EEE-EeCccCCCCC-CCcHHHHHHHHHHHcCCCCEEEecCCCCccCCCCCc
Confidence 443 22 222211 234677777777777899999998766555566543
No 212
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=20.68 E-value=1e+02 Score=21.89 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=66.8
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhC--CCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccC--------
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAF--GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNAT-------- 77 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~a--g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~-------- 77 (219)
..+|++.+.|.- =.++..+...|... ||++.--..++. .+....|+.+..-.+
T Consensus 11 ~g~V~lsv~D~d-K~~~v~~ak~~~~ll~Gf~l~AT~gTa~----------------~L~e~~Gl~v~~v~k~~eGG~p~ 73 (152)
T 1b93_A 11 RKHIALVAHDHC-KQMLMSWVERHQPLLEQHVLYATGTTGN----------------LISRATGMNVNAMLSGPMGGDQQ 73 (152)
T ss_dssp SCEEEEEECGGG-HHHHHHHHHHTHHHHTTSEEEEETTHHH----------------HHHHHHCCCCEEECCGGGTHHHH
T ss_pred CCEEEEEEehhh-HHHHHHHHHHHHHHhCCCEEEEccHHHH----------------HHHHHhCceeEEEEecCCCCCch
Confidence 467888888753 35777777888877 886643332221 111112322211111
Q ss_pred c-cCCCCCCccEEEEcCCC-CcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCC
Q 027785 78 F-DEIDPTKYDGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 138 (219)
Q Consensus 78 ~-~~~~~~~~D~liipGG~-~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g 138 (219)
+ +-+...+.|+||..-.+ +.. ++.+....+.|.+..++.|++..=.++.++..+=+++.
T Consensus 74 I~d~I~~geIdlVInt~~pl~~~--~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~ai~~~~ 134 (152)
T 1b93_A 74 VGALISEGKIDVLIFFWDPLNAV--PHDPDVKALLRLATVWNIPVATNVATADFIIQSPHFND 134 (152)
T ss_dssp HHHHHHTTCCCEEEEECCTTSCC--TTHHHHHHHHHHHHHTTCCEESSHHHHHHHHTSGGGGS
T ss_pred HHHHHHCCCccEEEEcCCcccCC--cccccHHHHHHHHHHcCCCEEeCHHHHHHHHHHHhccc
Confidence 1 11223578888875432 211 23567888888888999999988888888887766665
No 213
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=20.65 E-value=43 Score=25.72 Aligned_cols=85 Identities=14% Similarity=0.054 Sum_probs=46.4
Q ss_pred CCEEEEEecCCCC---chhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCC
Q 027785 8 KRSVLLLCGDYME---DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 84 (219)
Q Consensus 8 ~~kv~il~~~g~~---~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 84 (219)
+.+|++++.+-.+ ..-+.++.+.+++.|+++.+.... .+ - ... ..++.+-..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~----------------~-----~~~---~~i~~l~~~ 56 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DG----------------E-----KTL---NAIDSLAAS 56 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECC-SH----------------H-----HHH---HHHHHHHHT
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCC-CH----------------H-----HHH---HHHHHHHHc
Confidence 4689999875322 233344556666779988776542 10 0 000 011111123
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEe
Q 027785 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASIC 124 (219)
Q Consensus 85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic 124 (219)
.+|.||+.+.. .......+++..+.+.|++.+.
T Consensus 57 ~vdgiii~~~~-------~~~~~~~~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 57 GAKGFVICTPD-------PKLGSAIVAKARGYDMKVIAVD 89 (306)
T ss_dssp TCCEEEEECSC-------GGGHHHHHHHHHHTTCEEEEES
T ss_pred CCCEEEEeCCC-------chhhHHHHHHHHHCCCcEEEeC
Confidence 58999987532 1233445566666788888776
No 214
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=20.53 E-value=1.6e+02 Score=22.99 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=26.6
Q ss_pred CCEEEEEecCCCCchhh-----HHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYMEDYEA-----MVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~-----~~~~~~l~~ag~~v~~~s~~ 44 (219)
++||+|+..-...+.|+ ..+...|++.|+++..+...
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~ 54 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPA 54 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36898888654444444 56678888999999998743
No 215
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=20.48 E-value=84 Score=23.96 Aligned_cols=37 Identities=8% Similarity=-0.091 Sum_probs=24.2
Q ss_pred CCEEEEEecCCCC---chhhHHHHHHHHhCCCeEEEecCC
Q 027785 8 KRSVLLLCGDYME---DYEAMVPFQALLAFGVSVDAACPG 44 (219)
Q Consensus 8 ~~kv~il~~~g~~---~~e~~~~~~~l~~ag~~v~~~s~~ 44 (219)
+++|++++.+-.+ ..-+.++.+.+++.|+++.+....
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 55 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSD 55 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 6789999975222 223445566677889998776543
No 216
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=20.35 E-value=1.3e+02 Score=21.17 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=28.7
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehh
Q 027785 84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (219)
Q Consensus 84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G 126 (219)
.+-|++|+....| ..+.+.+.++.+.++|.++.+|+.-
T Consensus 81 ~~~d~vi~iS~sG-----~t~~~~~~~~~ak~~g~~vi~IT~~ 118 (180)
T 1jeo_A 81 EKDDLLILISGSG-----RTESVLTVAKKAKNINNNIIAIVCE 118 (180)
T ss_dssp CTTCEEEEEESSS-----CCHHHHHHHHHHHTTCSCEEEEESS
T ss_pred CCCCEEEEEeCCC-----CcHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3567777765443 4678999999999999998888763
No 217
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=20.31 E-value=2.3e+02 Score=22.73 Aligned_cols=32 Identities=9% Similarity=-0.030 Sum_probs=18.4
Q ss_pred CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEec
Q 027785 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC 42 (219)
Q Consensus 8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s 42 (219)
+.||+|+=.-.. ........+...++++..+.
T Consensus 26 ~irvgiiG~G~~---~~~~~~~~~~~~~~~lvav~ 57 (361)
T 3u3x_A 26 ELRFAAVGLNHN---HIYGQVNCLLRAGARLAGFH 57 (361)
T ss_dssp CCEEEEECCCST---THHHHHHHHHHTTCEEEEEE
T ss_pred CcEEEEECcCHH---HHHHHHHHhhcCCcEEEEEE
Confidence 468998865332 22334455566788765443
No 218
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=20.22 E-value=1.4e+02 Score=24.27 Aligned_cols=35 Identities=14% Similarity=-0.072 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCCc---hhhHHHHHHHHhCCCeEEEecC
Q 027785 8 KRSVLLLCGDYMED---YEAMVPFQALLAFGVSVDAACP 43 (219)
Q Consensus 8 ~~kv~il~~~g~~~---~e~~~~~~~l~~ag~~v~~~s~ 43 (219)
+++|+|++ +..+. .=+.++.+.+.+.|+.+.+...
T Consensus 25 s~~Igvv~-~~~~~f~~~l~~gi~~~a~~~g~~~~i~~~ 62 (412)
T 4fe7_A 25 RHRITLLF-NANKAYDRQVVEGVGEYLQASQSEWDIFIE 62 (412)
T ss_dssp CEEEEEEC-CTTSHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CceEEEEe-CCcchhhHHHHHHHHHHHHhcCCCeEEEec
Confidence 56799998 42221 1233455556667898887754
No 219
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=20.21 E-value=2.5e+02 Score=20.30 Aligned_cols=82 Identities=15% Similarity=-0.016 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHhcC-----CeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEEcCCeEeCC
Q 027785 103 NDSVIDLVRKFSNSG-----KTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177 (219)
Q Consensus 103 ~~~l~~~l~~~~~~~-----~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~dg~liT~~ 177 (219)
.|.+..-+.+....+ -.+++.+.|..+.| .=.+|-++..-|....+-..+ -..|.|+++=+
T Consensus 62 Ypd~a~~va~~V~~g~~d~GIliCGTGiG~sIaA--NKv~GIRAAlc~d~~sA~~aR------------~hNnANVL~lG 127 (169)
T 3ph3_A 62 YPDFGLKVAEAVKSGECDRGIVICGTGLGISIAA--NKVPGIRAAVCTNSYMARMSR------------EHNDANILALG 127 (169)
T ss_dssp HHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHH--TTSTTCCEEECSSHHHHHHHH------------HTTCCSEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHh--hcCCCeEEEEeCCHHHHHHHH------------HhCCCcEEEEc
Confidence 455555555555443 33444445555444 667888888777654322111 24578888888
Q ss_pred CCCCHHHHHHHHHHHHccccc
Q 027785 178 TYEGHPEFIRLFLKALGGTIT 198 (219)
Q Consensus 178 g~~s~~~~~l~li~~l~~~~~ 198 (219)
+-.-+.+++..|++.+.....
T Consensus 128 ~Rvig~~lA~~Iv~~fL~t~F 148 (169)
T 3ph3_A 128 ERVVGLDLALDIVDTWLKAEF 148 (169)
T ss_dssp TTTSCHHHHHHHHHHHHHCCC
T ss_pred ccccCHHHHHHHHHHHHcCCC
Confidence 888889999999997766544
No 220
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=20.10 E-value=94 Score=22.23 Aligned_cols=91 Identities=8% Similarity=0.005 Sum_probs=51.5
Q ss_pred CCEEEEEecCCCCc---hhhHHHHHHHHhCCC---eEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCC
Q 027785 8 KRSVLLLCGDYMED---YEAMVPFQALLAFGV---SVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI 81 (219)
Q Consensus 8 ~~kv~il~~~g~~~---~e~~~~~~~l~~ag~---~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~ 81 (219)
+.||+|+.....+. .=+.+..+.|.+.|. +++++..-+. .-+++....-..
T Consensus 11 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGa---------------------fEiP~aa~~la~-- 67 (157)
T 2obx_A 11 TVRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGA---------------------YEIPLHARTLAE-- 67 (157)
T ss_dssp CEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSG---------------------GGHHHHHHHHHH--
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH---------------------HHHHHHHHHHHh--
Confidence 57999999874443 456677888888774 3555544321 112222211111
Q ss_pred CCCCccEEEEcCCC--Ccc--c-ccCChHHHHHHHHHHhcCCeEEE
Q 027785 82 DPTKYDGLVIPGGR--APE--Y-LAMNDSVIDLVRKFSNSGKTIAS 122 (219)
Q Consensus 82 ~~~~~D~liipGG~--~~~--~-~~~~~~l~~~l~~~~~~~~~v~~ 122 (219)
..+||+++..|-- |.- + +-.+.....+.+-..+.++||..
T Consensus 68 -~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~Gl~~v~L~~~vPV~~ 112 (157)
T 2obx_A 68 -TGRYGAVLGTAFVVNGGIYRHEFVASAVIDGMMNVQLSTGVPVLS 112 (157)
T ss_dssp -HTCCSEEEEEEECCCCSSBCCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred -cCCCCEEEEeeccccCCCcHHHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 1479999998864 321 1 11233455566666678888764
Done!