BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027786
MSTSASLSVTAGMPISTQHGSAGRGRAIVLSLPSNHTLPQGLGLVSAHSNLKGRRGSFKT
AVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQD
FWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLSDSYEAGSLEEALA
SNPATLEFEKQEKWVAPYPKYEFGWWEAFLPTGSKGSKV

High Scoring Gene Products

Symbol, full name Information P value
EMB3143
AT5G58250 		protein from Arabidopsis thaliana 5.3e-56

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027786
        (219 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2161218 - symbol:EMB3143 "AT5G58250" species:3...   577  5.3e-56   1


>TAIR|locus:2161218 [details] [associations]
            symbol:EMB3143 "AT5G58250" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009579 "thylakoid" evidence=IDA]
            EMBL:CP002688 GO:GO:0009507 EMBL:AB019228 GO:GO:0009579
            IPI:IPI00524167 RefSeq:NP_200633.1 UniGene:At.22226
            ProteinModelPortal:Q9LVM3 SMR:Q9LVM3 STRING:Q9LVM3 PRIDE:Q9LVM3
            EnsemblPlants:AT5G58250.1 GeneID:835937 KEGG:ath:AT5G58250
            TAIR:At5g58250 InParanoid:Q9LVM3 OMA:WVAPYPK PhylomeDB:Q9LVM3
            ProtClustDB:CLSN2723810 Genevestigator:Q9LVM3 InterPro:IPR019616
            Pfam:PF10674 Uniprot:Q9LVM3
        Length = 211

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 125/219 (57%), Positives = 147/219 (67%)

Query:     8 SVTAGMPISTQHGSAG-RGRAIVLS--LPSN----HTLPQGLGLVSAHSNLKGRRGSFKT 60
             SVT  + ++    +A  R +  ++S   P      H     L L S+H +      SFKT
Sbjct:     3 SVTGALTVAVPPTAAACRTKPFLISSSFPKQTKKLHLSSPSLSLPSSHFS-----SSFKT 57

Query:    61 AXXXXXXXXXXXXXXPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQD 120
             A                + E+ KY+F+VANAKFMLDEEEHFQE LFERLR +GER   QD
Sbjct:    58 AATSIEQQSSVN-----KGESTKYHFLVANAKFMLDEEEHFQEQLFERLRYFGERELVQD 112

Query:   121 FWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLSDSYEAGSLEEALA 180
             FWLVIEPKFLD FP IT+RLRRPAVALVSTNG WITFMKLRLDRVL DS+EA SL+EALA
Sbjct:   113 FWLVIEPKFLDNFPKITQRLRRPAVALVSTNGTWITFMKLRLDRVLYDSFEATSLDEALA 172

Query:   181 SNPATLEFEKQEKWVAPYPKYEFGWWEAFLPTGSKGSKV 219
             SNP TLEF+K + WVAPYPKYE GWW+ FLP  ++ S V
Sbjct:   173 SNPTTLEFDKPKNWVAPYPKYEPGWWDTFLPKVTQESAV 211


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      219       205   0.00096  111 3  11 22  0.38    33
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  170 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.09u 0.10s 17.19t   Elapsed:  00:00:01
  Total cpu time:  17.09u 0.10s 17.19t   Elapsed:  00:00:01
  Start:  Sat May 11 09:15:50 2013   End:  Sat May 11 09:15:51 2013

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