BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027786
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JSR|A Chain A, X-ray Structure Of All0216 Protein From Nostoc Sp. Pcc
7120 At The Resolution 1.8a. Northeast Structural
Genomics Consortium Target Nsr236
Length = 119
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 67/93 (72%), Gaps = 3/93 (3%)
Query: 84 YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLD--KFPNITKRLR 141
YY+V+A+ +F+L +EE +E+L ER R+Y E+ KE DFWLV +P FL+ +F +I +
Sbjct: 6 YYYVLASRRFLL-QEEPIEEVLKERTRHYHEQEKEIDFWLVPQPAFLEAPEFADIKAKCP 64
Query: 142 RPAVALVSTNGPWITFMKLRLDRVLSDSYEAGS 174
+PA A++STN +IT++KLRL+ V++ + A S
Sbjct: 65 QPAAAIISTNSQFITWLKLRLEYVVTGEFSAPS 97
>pdb|3HZE|A Chain A, Crystal Structure Of Ycf54 Protein From
Thermosynechococcus Elongatus, Northeast Structural
Genomics Consortium Target Ter59
pdb|3HZE|B Chain B, Crystal Structure Of Ycf54 Protein From
Thermosynechococcus Elongatus, Northeast Structural
Genomics Consortium Target Ter59
pdb|3HZE|C Chain C, Crystal Structure Of Ycf54 Protein From
Thermosynechococcus Elongatus, Northeast Structural
Genomics Consortium Target Ter59
pdb|3HZE|D Chain D, Crystal Structure Of Ycf54 Protein From
Thermosynechococcus Elongatus, Northeast Structural
Genomics Consortium Target Ter59
pdb|3HZE|E Chain E, Crystal Structure Of Ycf54 Protein From
Thermosynechococcus Elongatus, Northeast Structural
Genomics Consortium Target Ter59
pdb|3HZE|F Chain F, Crystal Structure Of Ycf54 Protein From
Thermosynechococcus Elongatus, Northeast Structural
Genomics Consortium Target Ter59
Length = 114
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Query: 84 YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLD--KFPNITKRLR 141
YY+++A+ KF L EEE +E+ ER R+Y E+ KE DFWLV EP FL+ +F R
Sbjct: 4 YYYILASKKF-LTEEEPLEEVFRERQRHYREQGKEIDFWLVPEPAFLEQPQFAEQKARCP 62
Query: 142 RPAVALVSTNGPWITFMKLRLDRVLSDSYEAGSLEEALASNPATLE 187
+PA A++STN +I ++KLRL+ VL + + + LAS + LE
Sbjct: 63 QPAAAIISTNQQFIQWLKLRLEYVLXGQFTSEEVPNPLASLASVLE 108
>pdb|3C0K|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltranferase
pdb|3C0K|B Chain B, Crystal Structure Of A Ribosomal Rna Methyltranferase
Length = 396
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 92 KFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNIT------KRLRRPAV 145
K L + E ++ +F+ LR Y +R ++ D + PKF++ + K + A+
Sbjct: 267 KLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVXDPPKFVENKSQLXGACRGYKDINXLAI 326
Query: 146 ALVSTNGPWITF 157
L++ G +TF
Sbjct: 327 QLLNEGGILLTF 338
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 136 ITKRLRRPAVALVSTNGPWITFMKLRLDR 164
++ RL P + LVST G I +KL +DR
Sbjct: 137 LSARLGCPVIPLVSTRGRGIEALKLAIDR 165
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 136 ITKRLRRPAVALVSTNGPWITFMKLRLDR 164
++ RL P + LVST G I +KL +DR
Sbjct: 137 LSARLGCPVIPLVSTRGRGIEALKLAIDR 165
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 136 ITKRLRRPAVALVSTNGPWITFMKLRLDR 164
++ RL P + LVST G I +KL +DR
Sbjct: 137 LSARLGCPVIPLVSTRGRGIEALKLAIDR 165
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 136 ITKRLRRPAVALVSTNGPWITFMKLRLDR 164
+ RL P + LVST G I +K+ LDR
Sbjct: 137 LAARLGCPVIPLVSTRGRGIEALKIALDR 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,280,388
Number of Sequences: 62578
Number of extensions: 243638
Number of successful extensions: 436
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 10
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)