BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027786
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51204|YCF54_PORPU Uncharacterized protein ycf54 OS=Porphyra purpurea GN=ycf54 PE=3
SV=1
Length = 108
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 84 YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRP 143
YYF +A+ F+L EE +E+ ER+ Y +KE DFWL+ PKFL+K I + P
Sbjct: 4 YYFALASQNFLLSEEP-LEEVFRERINYYQSNNKEIDFWLIPNPKFLNKPAMIKFKNLVP 62
Query: 144 --AVALVSTNGPWITFMKLRLDRVLSDSYE 171
A+A++STN +I ++KLR+ V +E
Sbjct: 63 NEAIAIISTNSIFINWLKLRIGYVCIGQFE 92
>sp|P72777|YC54L_SYNY3 Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr1780 PE=3 SV=1
Length = 133
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 64/93 (68%), Gaps = 3/93 (3%)
Query: 84 YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRP 143
YY+ +A+ KF+L+EE +E+L ER R+YGE++KE DFW VI+P FL+ + + P
Sbjct: 31 YYYALASQKFLLEEEPF-EEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAP 89
Query: 144 A--VALVSTNGPWITFMKLRLDRVLSDSYEAGS 174
VA+VSTN +I ++KLRL+ VL+ +EA S
Sbjct: 90 EKNVAIVSTNKSFIVWVKLRLEYVLTGEFEAPS 122
>sp|Q1XDT3|YCF54_PORYE Uncharacterized protein ycf54 OS=Porphyra yezoensis GN=ycf54 PE=3
SV=1
Length = 111
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 84 YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRP 143
YYF +A+ F+L +E +E+ ER+ Y +K DFWL+ P FL+K I+ + P
Sbjct: 4 YYFALASQNFLL-VQEPLEEVFRERVNYYQSNNKAIDFWLIPNPSFLEKPEMISFKNLVP 62
Query: 144 --AVALVSTNGPWITFMKLRLDRVLSDSYE 171
AVA++STN +I ++KLR+ + +E
Sbjct: 63 KDAVAIISTNPIFINWLKLRIGYICIGQFE 92
>sp|O19890|YCF54_CYACA Uncharacterized protein ycf54 OS=Cyanidium caldarium GN=ycf54 PE=3
SV=1
Length = 103
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 80 EANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKR 139
+ N YY++ A+ F L +EE +E+L E+ ++ +K DFW+ K PN K
Sbjct: 4 DYNTYYYIAASKHF-LTQEEPLEEILREKTEHFIANNKSIDFWIFDSTKLNAHSPNEIKT 62
Query: 140 LRR----PAVALVSTNGPWITFMKLRLDRVLSDSYEAG 173
L++ P + ++S+N +IT++KLRL + +D +
Sbjct: 63 LQKTFFFPTILIISSNKKFITWLKLRLRYIFTDKIQLA 100
>sp|A9GIM9|MUTS_SORC5 DNA mismatch repair protein MutS OS=Sorangium cellulosum (strain So
ce56) GN=mutS PE=3 SV=1
Length = 918
Score = 35.4 bits (80), Expect = 0.29, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 2 STSASLSVTAGMPISTQHGSAGRGRAIVLSLPSNHTLPQGLGLVSAHSNLKGRRGSFKTA 61
S +++ AG+P G R RAI+ +L S LP G H++L+GR +
Sbjct: 818 SYGVAVARLAGVP----EGVLARARAILATLESGAALPGG-----KHASLRGRT---RGG 865
Query: 62 VASVDSNQISSSSVPPEKEA 81
A +D + ++VPPE+ A
Sbjct: 866 AAQLDLFAPAQAAVPPEQSA 885
>sp|Q2GFL7|SUCC_EHRCR Succinyl-CoA ligase [ADP-forming] subunit beta OS=Ehrlichia
chaffeensis (strain Arkansas) GN=sucC PE=3 SV=1
Length = 387
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 56 GSFKTAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGER 115
G AV S D+NQI + P E + F+ +AK D+ ++ + LR+Y E
Sbjct: 182 GKIYKAVLSTDANQIE---INPLVETSSGEFIALDAKINFDDNALYRHPDIQELRDYDEE 238
Query: 116 SKEQ 119
KE+
Sbjct: 239 IKEE 242
>sp|Q7N9A4|RPOB_PHOLL DNA-directed RNA polymerase subunit beta OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=rpoB PE=3
SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 86 FVVANAKFMLDEEEHFQELLFERLRNYGERS 116
FV+A A +LD+E HF E L RNYGE S
Sbjct: 614 FVIAQANTVLDDEGHFVEDLIT-CRNYGESS 643
>sp|A4XYJ7|RSMC_PSEMY Ribosomal RNA small subunit methyltransferase C OS=Pseudomonas
mendocina (strain ymp) GN=rsmC PE=3 SV=1
Length = 331
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 64/165 (38%), Gaps = 33/165 (20%)
Query: 13 MPISTQHGSAGRGRAIVL----SLPSNHTLPQGLGLVSAHSNLKGRRGSFKTAVASVDSN 68
+P HG RG A++L SLP H L G G + LK R S + ++ VD+
Sbjct: 167 LPGVFAHGRLDRGSALLLEHLDSLPQGHLLDFGCGAGVIGAALKRRYPSSRVSLLDVDAF 226
Query: 69 QISSSSVP---------------PEKEANKYYFVVANAKFMLDEEEHFQ---ELLFE--- 107
++SS + E + +V+N F H+Q LL +
Sbjct: 227 ALASSRLTLARNGLEAELIAGTGIESAPGELAAIVSNPPFHQGVHTHYQASENLLTQAAR 286
Query: 108 RLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNG 152
LR+ GE ++ FL K+P + +R P L G
Sbjct: 287 HLRDGGE-------LRLVANSFL-KYPPLIERHLGPCRTLAEAEG 323
>sp|Q83LM0|RLMI_SHIFL Ribosomal RNA large subunit methyltransferase I OS=Shigella
flexneri GN=rlmI PE=3 SV=1
Length = 396
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 60 TAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQ 119
+ V SVD++Q + E NK ++ A+F+ D+ +F+ LR Y +R ++
Sbjct: 244 SQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDD-------VFKLLRTYRDRGEKF 294
Query: 120 DFWLVIEPKFLDKFPNIT------KRLRRPAVALVSTNGPWITF 157
D ++ PKF++ + K + A+ L++ G +TF
Sbjct: 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338
>sp|Q31YN0|RLMI_SHIBS Ribosomal RNA large subunit methyltransferase I OS=Shigella boydii
serotype 4 (strain Sb227) GN=rlmI PE=3 SV=2
Length = 396
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 60 TAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQ 119
+ V SVD++Q + E NK ++ A+F+ D+ +F+ LR Y +R ++
Sbjct: 244 SQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDD-------VFKLLRTYRDRGEKF 294
Query: 120 DFWLVIEPKFLDKFPNIT------KRLRRPAVALVSTNGPWITF 157
D ++ PKF++ + K + A+ L++ G +TF
Sbjct: 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338
>sp|Q0T667|RLMI_SHIF8 Ribosomal RNA large subunit methyltransferase I OS=Shigella
flexneri serotype 5b (strain 8401) GN=rlmI PE=3 SV=2
Length = 396
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 60 TAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQ 119
+ V SVD++Q + E NK ++ A+F+ D+ +F+ LR Y +R ++
Sbjct: 244 SQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDD-------VFKLLRTYRDRGEKF 294
Query: 120 DFWLVIEPKFLDKFPNIT------KRLRRPAVALVSTNGPWITF 157
D ++ PKF++ + K + A+ L++ G +TF
Sbjct: 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338
>sp|B2TTS7|RLMI_SHIB3 Ribosomal RNA large subunit methyltransferase I OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rlmI PE=3
SV=1
Length = 396
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 60 TAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQ 119
+ V SVD++Q + E NK ++ A+F+ D+ +F+ LR Y +R ++
Sbjct: 244 SQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDD-------VFKLLRTYRDRGEKF 294
Query: 120 DFWLVIEPKFLDKFPNIT------KRLRRPAVALVSTNGPWITF 157
D ++ PKF++ + K + A+ L++ G +TF
Sbjct: 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338
>sp|B1LJ30|RLMI_ECOSM Ribosomal RNA large subunit methyltransferase I OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rlmI PE=3 SV=1
Length = 396
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 60 TAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQ 119
+ V SVD++Q + E NK ++ A+F+ D+ +F+ LR Y +R ++
Sbjct: 244 SQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDD-------VFKLLRTYRDRGEKF 294
Query: 120 DFWLVIEPKFLDKFPNIT------KRLRRPAVALVSTNGPWITF 157
D ++ PKF++ + K + A+ L++ G +TF
Sbjct: 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGVLLTF 338
>sp|B5YT98|RLMI_ECO5E Ribosomal RNA large subunit methyltransferase I OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rlmI PE=3 SV=1
Length = 396
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 60 TAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQ 119
+ V SVD++Q + E NK ++ A+F+ D+ +F+ LR Y +R ++
Sbjct: 244 SQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDD-------VFKLLRTYRDRGEKF 294
Query: 120 DFWLVIEPKFLDKFPNIT------KRLRRPAVALVSTNGPWITF 157
D ++ PKF++ + K + A+ L++ G +TF
Sbjct: 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338
>sp|Q8XD85|RLMI_ECO57 Ribosomal RNA large subunit methyltransferase I OS=Escherichia coli
O157:H7 GN=rlmI PE=3 SV=2
Length = 396
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 60 TAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQ 119
+ V SVD++Q + E NK ++ A+F+ D+ +F+ LR Y +R ++
Sbjct: 244 SQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDD-------VFKLLRTYRDRGEKF 294
Query: 120 DFWLVIEPKFLDKFPNIT------KRLRRPAVALVSTNGPWITF 157
D ++ PKF++ + K + A+ L++ G +TF
Sbjct: 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338
>sp|A7ZK71|RLMI_ECO24 Ribosomal RNA large subunit methyltransferase I OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rlmI PE=3 SV=1
Length = 396
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 60 TAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQ 119
+ V SVD++Q + E NK ++ A+F+ D+ +F+ LR Y +R ++
Sbjct: 244 SQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDD-------VFKLLRTYRDRGEKF 294
Query: 120 DFWLVIEPKFLDKFPNIT------KRLRRPAVALVSTNGPWITF 157
D ++ PKF++ + K + A+ L++ G +TF
Sbjct: 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338
>sp|B6I942|RLMI_ECOSE Ribosomal RNA large subunit methyltransferase I OS=Escherichia coli
(strain SE11) GN=rlmI PE=3 SV=1
Length = 396
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 60 TAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQ 119
+ V SVD++Q + E NK ++ A+F+ D+ +F+ LR Y +R ++
Sbjct: 244 SQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDD-------VFKLLRTYRDRGEKF 294
Query: 120 DFWLVIEPKFLDKFPNIT------KRLRRPAVALVSTNGPWITF 157
D ++ PKF++ + K + A+ L++ G +TF
Sbjct: 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338
>sp|P75876|RLMI_ECOLI Ribosomal RNA large subunit methyltransferase I OS=Escherichia coli
(strain K12) GN=rlmI PE=1 SV=2
Length = 396
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 60 TAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQ 119
+ V SVD++Q + E NK ++ A+F+ D+ +F+ LR Y +R ++
Sbjct: 244 SQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDD-------VFKLLRTYRDRGEKF 294
Query: 120 DFWLVIEPKFLDKFPNIT------KRLRRPAVALVSTNGPWITF 157
D ++ PKF++ + K + A+ L++ G +TF
Sbjct: 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338
>sp|B1IVW5|RLMI_ECOLC Ribosomal RNA large subunit methyltransferase I OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rlmI PE=3 SV=1
Length = 396
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 60 TAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQ 119
+ V SVD++Q + E NK ++ A+F+ D+ +F+ LR Y +R ++
Sbjct: 244 SQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDD-------VFKLLRTYRDRGEKF 294
Query: 120 DFWLVIEPKFLDKFPNIT------KRLRRPAVALVSTNGPWITF 157
D ++ PKF++ + K + A+ L++ G +TF
Sbjct: 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338
>sp|A7ZYR9|RLMI_ECOHS Ribosomal RNA large subunit methyltransferase I OS=Escherichia coli
O9:H4 (strain HS) GN=rlmI PE=3 SV=1
Length = 396
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 60 TAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQ 119
+ V SVD++Q + E NK ++ A+F+ D+ +F+ LR Y +R ++
Sbjct: 244 SQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDD-------VFKLLRTYRDRGEKF 294
Query: 120 DFWLVIEPKFLDKFPNIT------KRLRRPAVALVSTNGPWITF 157
D ++ PKF++ + K + A+ L++ G +TF
Sbjct: 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338
>sp|B1X8S1|RLMI_ECODH Ribosomal RNA large subunit methyltransferase I OS=Escherichia coli
(strain K12 / DH10B) GN=rlmI PE=3 SV=1
Length = 396
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 60 TAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQ 119
+ V SVD++Q + E NK ++ A+F+ D+ +F+ LR Y +R ++
Sbjct: 244 SQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDD-------VFKLLRTYRDRGEKF 294
Query: 120 DFWLVIEPKFLDKFPNIT------KRLRRPAVALVSTNGPWITF 157
D ++ PKF++ + K + A+ L++ G +TF
Sbjct: 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338
>sp|C4ZQ93|RLMI_ECOBW Ribosomal RNA large subunit methyltransferase I OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rlmI PE=3 SV=1
Length = 396
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 60 TAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQ 119
+ V SVD++Q + E NK ++ A+F+ D+ +F+ LR Y +R ++
Sbjct: 244 SQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDD-------VFKLLRTYRDRGEKF 294
Query: 120 DFWLVIEPKFLDKFPNIT------KRLRRPAVALVSTNGPWITF 157
D ++ PKF++ + K + A+ L++ G +TF
Sbjct: 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338
>sp|Q32HT9|RLMI_SHIDS Ribosomal RNA large subunit methyltransferase I OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rlmI PE=3 SV=1
Length = 398
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 62 VASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDF 121
V SVD++Q + E NK ++ A+F+ D+ +F+ LR Y +R ++ D
Sbjct: 246 VVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDD-------VFKLLRTYRDRGEKFDV 296
Query: 122 WLVIEPKFLDKFPNIT------KRLRRPAVALVSTNGPWITF 157
++ PKF++ + K + A+ L++ G +TF
Sbjct: 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338
>sp|Q48252|CAGE_HELPY CAG pathogenicity island protein 23 OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=cagE PE=4 SV=2
Length = 983
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 83 KYYFVVANAKFMLDEEEHFQELLFER--LRNYGERSKEQ-----DFWLVIEPKFLD 131
K+YF K ++DE L+F +R Y E+ K + F+L IE LD
Sbjct: 222 KFYFHTVKKKIVIDETNRDYSLIFSNDFMRAYNEKQKRESFYDISFYLTIEQDLLD 277
>sp|Q4I7F9|PRP28_GIBZE Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Gibberella
zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL
31084) GN=PRP28 PE=3 SV=1
Length = 721
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 88 VANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVAL 147
V N K DE E+ Q + +R +R ++ + P +++ K LRRPA+
Sbjct: 468 VTNEKPDTDEAENAQ--IMQRYLGGRDRYRQTMMYTATMPPLVERIAK--KYLRRPAIVT 523
Query: 148 VSTNGPWITFMKLRLDRVLSDSYEAGSLEEALAS 181
+ G + ++ R++ V + L+E L+S
Sbjct: 524 IGNAGEAVDTVEQRVEFVSGEDRRKKRLQEILSS 557
>sp|Q9ZLT4|CAGE_HELPJ CAG pathogenicity island protein 23 OS=Helicobacter pylori (strain
J99) GN=cagE PE=4 SV=1
Length = 983
Score = 30.4 bits (67), Expect = 8.6, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 83 KYYFVVANAKFMLDEEEHFQELLFER--LRNYGERSKEQ-----DFWLVIEPKFLD 131
K+YF K ++DE L+F +R Y E+ K + F+L IE LD
Sbjct: 222 KFYFHTVKKKIVIDETNRDYGLIFSNDFMRAYNEKQKRESFYDISFYLTIEQDLLD 277
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,190,594
Number of Sequences: 539616
Number of extensions: 3372762
Number of successful extensions: 8714
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 8699
Number of HSP's gapped (non-prelim): 32
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)