Query 027786
Match_columns 219
No_of_seqs 79 out of 81
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 15:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027786.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027786hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10674 Ycf54: Protein of unk 100.0 1.3E-53 2.8E-58 330.0 7.0 91 82-173 1-93 (93)
2 cd00377 ICL_PEPM Members of th 47.1 75 0.0016 27.7 6.6 84 84-170 142-228 (243)
3 PF06440 DNA_pol3_theta: DNA p 44.5 14 0.00031 28.6 1.6 21 98-118 45-65 (75)
4 PRK10969 DNA polymerase III su 37.4 20 0.00043 27.8 1.3 19 99-117 46-64 (75)
5 PF08251 Mastoparan_2: Mastopa 34.1 15 0.00033 20.6 0.2 6 155-160 1-6 (14)
6 PRK05728 DNA polymerase III su 32.6 42 0.00091 27.1 2.6 28 97-124 112-139 (142)
7 PF09664 DUF2399: Protein of u 29.8 43 0.00093 27.7 2.3 49 121-172 21-77 (152)
8 PF05774 Herpes_heli_pri: Herp 29.7 90 0.0019 26.1 4.1 57 101-159 18-77 (128)
9 PF10962 DUF2764: Protein of u 24.7 38 0.00083 31.0 1.2 12 81-92 1-12 (271)
10 KOG2010 Double stranded RNA bi 22.9 23 0.00051 34.3 -0.5 96 20-119 55-177 (405)
11 PRK05365 malonic semialdehyde 22.8 86 0.0019 25.6 2.8 38 117-154 49-92 (195)
12 cd01425 RPS2 Ribosomal protein 22.3 1.2E+02 0.0027 25.4 3.7 54 112-172 121-176 (193)
13 KOG4113 Guanine nucleotide exc 22.1 45 0.00098 27.1 1.0 49 100-148 23-81 (99)
14 PF12996 DUF3880: DUF based on 21.9 56 0.0012 23.7 1.4 42 122-167 1-43 (79)
15 PRK11320 prpB 2-methylisocitra 20.8 4.1E+02 0.0088 24.4 7.0 82 85-171 151-237 (292)
No 1
>PF10674 Ycf54: Protein of unknown function (DUF2488); InterPro: IPR019616 This entry represents proteins annotated as Ycf54. It is found encoded in the chloroplast genomes of algae, it is also found in plants and in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.; PDB: 3JSR_A 3HZE_D.
Probab=100.00 E-value=1.3e-53 Score=329.96 Aligned_cols=91 Identities=56% Similarity=0.967 Sum_probs=80.4
Q ss_pred ceEEEEeecccccCcccchhHHHHHHHHHhhhccCccccEEEecCccccc--cChhhHhhcCCCcEEEEecCcchhhhhh
Q 027786 82 NKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLD--KFPNITKRLRRPAVALVSTNGPWITFMK 159 (219)
Q Consensus 82 ttYYfvvAS~kFLl~eEEplEEVLrER~R~Y~E~~KeiDFWLV~~PaFLe--efp~ik~klpqPavAIVSTd~~fITwLK 159 (219)
|||||||||++||+ +|||||||||||+|||+|+||+||||||++|+||| +|+++++||++|||||||||++||||||
T Consensus 1 ttYyf~~As~~Fl~-~eEpleEvLrER~r~y~e~~k~iDFWlv~~PaFLe~p~~~~~~~k~~~p~~AiVSTd~~fItwlK 79 (93)
T PF10674_consen 1 TTYYFVLASAKFLL-EEEPLEEVLRERTRHYKEKNKEIDFWLVKEPAFLEAPEFPEIKKKLPQPAAAIVSTDKQFITWLK 79 (93)
T ss_dssp EEEEEEEEEHHHHH-CTS-HHHHHHHHHHHHHHCT----EEEEESBGGGGSGGGHHHHHHS-SSEEEEEES-HHHHHHHH
T ss_pred CeEEEEEechhhhc-cCccHHHHHHHHHHHHHhcCCCccEEEecChhhcCccccHHHHHhCCCCcEEEEecChHHHHHHH
Confidence 69999999999998 66999999999999999999999999999999999 5999999999999999999999999999
Q ss_pred hhcCeEEeeeeccC
Q 027786 160 LRLDRVLSDSYEAG 173 (219)
Q Consensus 160 LRLe~V~~G~FeA~ 173 (219)
||||||++|+|+|+
T Consensus 80 LRL~~V~~G~Feap 93 (93)
T PF10674_consen 80 LRLEYVLKGEFEAP 93 (93)
T ss_dssp HHH-SSEEEEEECS
T ss_pred HhhheEEEEEeeCC
Confidence 99999999999985
No 2
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=47.12 E-value=75 Score=27.66 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=63.3
Q ss_pred EEEEeecccccCcccchhHHHHHHHHHhhhccCccccEEEecCccccccChhhHhhcCCCcEEEEecCc---chhhhhhh
Q 027786 84 YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNG---PWITFMKL 160 (219)
Q Consensus 84 YYfvvAS~kFLl~eEEplEEVLrER~R~Y~E~~KeiDFWLV~~PaFLeefp~ik~klpqPavAIVSTd~---~fITwLKL 160 (219)
=.+|+|..+-++..++.++|.+ ||.+.|.+.+ -|-=+|.-|.=.+++..+.+.++.|.+...+-+. ..-+.-+|
T Consensus 142 ~~~IiARTDa~~~~~~~~~eai-~Ra~ay~~AG--AD~v~v~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~l 218 (243)
T cd00377 142 DFVIIARTDALLAGEEGLDEAI-ERAKAYAEAG--ADGIFVEGLKDPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAEL 218 (243)
T ss_pred CeEEEEEcCchhccCCCHHHHH-HHHHHHHHcC--CCEEEeCCCCCHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHC
Confidence 4788888775553446888877 6999999998 4777777776555788899999999888887776 23366677
Q ss_pred hcCeEEeeee
Q 027786 161 RLDRVLSDSY 170 (219)
Q Consensus 161 RLe~V~~G~F 170 (219)
=..+|..|..
T Consensus 219 G~~~v~~~~~ 228 (243)
T cd00377 219 GVRRVSYGLA 228 (243)
T ss_pred CCeEEEEChH
Confidence 7788877764
No 3
>PF06440 DNA_pol3_theta: DNA polymerase III, theta subunit; InterPro: IPR009052 This entry represents the theta subunit of DNA polymerase III from bacteria, whose core structure consists of an irregular array of three helices []. DNA polymerase III (Pol III) is the primary enzyme responsible for replication of Escherichia coli chromosomal DNA. The holoenzyme consists of 17 proteins and contains two core polymerases. The Pol III catalytic core has three tightly associated subunits: alpha, epsilon and theta. The alpha subunit is responsible for the DNA polymerase activity, while the epsilon subunit is the 3'-5' proofreading exonuclease. The epsilon subunit binds to both the alpha and theta subunits in the linear order alpha-epsilon-theta. The theta subunit is the smallest, and may act to enhance the proofreading activity of epsilon, especially under extreme conditions []. This entry also includes a homologue of polymerase III theta called HOT (homologue of theta) from Bacteriophage P1. HOT contains three alpha-helices, as reported for theta, but the folding topology of the two is different, which could account for the suggested greater heat stability of HOT as compared to theta [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 1SE7_A 2IDO_D 2AE9_A 1DU2_A 2XY8_B 2AXD_S.
Probab=44.54 E-value=14 Score=28.58 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=17.6
Q ss_pred cchhHHHHHHHHHhhhccCcc
Q 027786 98 EEHFQELLFERLRNYGERSKE 118 (219)
Q Consensus 98 EEplEEVLrER~R~Y~E~~Ke 118 (219)
-|+|.+-++||+.||....+.
T Consensus 45 Pe~LR~YFreRL~~YR~~s~~ 65 (75)
T PF06440_consen 45 PEHLREYFRERLNYYRQISKQ 65 (75)
T ss_dssp -GGGHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHHHHHh
Confidence 389999999999999987643
No 4
>PRK10969 DNA polymerase III subunit theta; Reviewed
Probab=37.41 E-value=20 Score=27.78 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHhhhccCc
Q 027786 99 EHFQELLFERLRNYGERSK 117 (219)
Q Consensus 99 EplEEVLrER~R~Y~E~~K 117 (219)
|++.|-+|||+.||.+.++
T Consensus 46 e~lR~yFreRL~~yR~~s~ 64 (75)
T PRK10969 46 EHLRSYFRERLIAYRLASV 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7899999999999997664
No 5
>PF08251 Mastoparan_2: Mastoparan peptide; InterPro: IPR013214 Mastoparan (MP) peptides I, II and III are extracted from the venom gland of Protopolybia exigua (Neotropical social wasp). They are tetradecapeptides presenting from seven to ten hydrophobic amino acid residues and from two to four lysine residues in their primary sequences. These peptides cause the degranulation of mast cells. Protopolybia-MP-I also causes haemolysis of erythrocytes.
Probab=34.06 E-value=15 Score=20.55 Aligned_cols=6 Identities=50% Similarity=1.005 Sum_probs=5.0
Q ss_pred hhhhhh
Q 027786 155 ITFMKL 160 (219)
Q Consensus 155 ITwLKL 160 (219)
|+||||
T Consensus 1 inwlkl 6 (14)
T PF08251_consen 1 INWLKL 6 (14)
T ss_pred CcHHHH
Confidence 789987
No 6
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=32.62 E-value=42 Score=27.10 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=24.0
Q ss_pred ccchhHHHHHHHHHhhhccCccccEEEe
Q 027786 97 EEEHFQELLFERLRNYGERSKEQDFWLV 124 (219)
Q Consensus 97 eEEplEEVLrER~R~Y~E~~KeiDFWLV 124 (219)
++|..-+.-|+|-|+|++.|-++.+|=+
T Consensus 112 ~d~~~~~~aR~r~r~Yr~~G~~l~~~~~ 139 (142)
T PRK05728 112 YDEAAKQAARERWKAYRAAGYALTYWQQ 139 (142)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCceEecC
Confidence 4567778999999999999999988854
No 7
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=29.75 E-value=43 Score=27.72 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=35.8
Q ss_pred EEEecCccccccChhhHhhcCCCcEEEEecCcchh-------hhh-hhhcCeEEeeeecc
Q 027786 121 FWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWI-------TFM-KLRLDRVLSDSYEA 172 (219)
Q Consensus 121 FWLV~~PaFLeefp~ik~klpqPavAIVSTd~~fI-------TwL-KLRLe~V~~G~FeA 172 (219)
.|+|.||+-++.+ .+++..++..+|+|+++.- ..| +.....-|.|.|+-
T Consensus 21 V~VvENp~Vf~~~---~~~~~~~~~pLVCt~G~p~~A~~~LL~~L~~~g~~l~y~GDfDp 77 (152)
T PF09664_consen 21 VYVVENPAVFSAL---ADELGASCPPLVCTSGQPSAAARRLLDRLAAAGARLYYSGDFDP 77 (152)
T ss_pred EEEEecHHHHHHH---HHhcCCCCCeEEEcCCcHHHHHHHHHHHHHhCCCEEEEecCCCH
Confidence 9999999987753 3446668999999998743 333 22456778898874
No 8
>PF05774 Herpes_heli_pri: Herpesvirus helicase-primase complex component; InterPro: IPR008650 This family consists of several helicase-primase complex components from the Gammaherpesviruses.
Probab=29.72 E-value=90 Score=26.09 Aligned_cols=57 Identities=19% Similarity=0.421 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhhhccCccccEEEecCcccccc---ChhhHhhcCCCcEEEEecCcchhhhhh
Q 027786 101 FQELLFERLRNYGERSKEQDFWLVIEPKFLDK---FPNITKRLRRPAVALVSTNGPWITFMK 159 (219)
Q Consensus 101 lEEVLrER~R~Y~E~~KeiDFWLV~~PaFLee---fp~ik~klpqPavAIVSTd~~fITwLK 159 (219)
-+++|.+=+.-|-.+...-.|||++ =+|.+. =|.+-.-|-.|.-=|+++|+.=+ |+.
T Consensus 18 p~~il~~il~~~f~nr~~t~FWLlP-~~f~~~~~~~P~~p~dcl~P~~fi~T~~G~~~-W~~ 77 (128)
T PF05774_consen 18 PEDILETILPLYFANRRNTNFWLLP-RSFVESAPIKPPLPSDCLAPKFFIFTKDGPSC-WHQ 77 (128)
T ss_pred HHHHHHHHHHHHHHccccCceeecc-cccccCCCCCCCCCccccCcceEEEeCCCchh-hcc
Confidence 4678888889999999999999998 578772 35555556667777999998876 654
No 9
>PF10962 DUF2764: Protein of unknown function (DUF2764); InterPro: IPR024492 This bacterial family of proteins has no known function.
Probab=24.68 E-value=38 Score=31.00 Aligned_cols=12 Identities=42% Similarity=0.830 Sum_probs=10.3
Q ss_pred cceEEEEeeccc
Q 027786 81 ANKYYFVVANAK 92 (219)
Q Consensus 81 ~ttYYfvvAS~k 92 (219)
|++|||+||.--
T Consensus 1 M~~YY~lvagLP 12 (271)
T PF10962_consen 1 MTKYYYLVAGLP 12 (271)
T ss_pred CCceeEEeecCC
Confidence 899999999754
No 10
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=22.94 E-value=23 Score=34.30 Aligned_cols=96 Identities=29% Similarity=0.294 Sum_probs=58.8
Q ss_pred CCCCCcceeeecCCCCCCCCCCCCCcccccc--------CCCCCCcccceeeeecCCC----CCCCC-------------
Q 027786 20 GSAGRGRAIVLSLPSNHTLPQGLGLVSAHSN--------LKGRRGSFKTAVASVDSNQ----ISSSS------------- 74 (219)
Q Consensus 20 ~~~~~~~~~~~~~p~~~~g~~~~~~~~~~s~--------~~~~~~s~~~a~~~~~sd~----~~ss~------------- 74 (219)
-|.||||-|+-+=|--.|.-+++...+.+|. .-.|++|.-+-+. +|..- +.-|-
T Consensus 55 pssgRrrpi~~e~~Ek~~~eK~SR~~~~~sa~~~~~l~g~ssRrgsgdts~~-iD~EAs~~e~~Dskv~EveekykkaMv 133 (405)
T KOG2010|consen 55 PSSGRRRPILDEKSEKQYAEKYSRPSSRNSASATTPLSGNSSRRGSGDTSSL-IDPEASLSELRDSKVSEVEEKYKKAMV 133 (405)
T ss_pred CCCCCCCcccccchHHHHHHhccCccchhhhhhcccccccccccccCCcccc-cChHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4679999999888887787777766654432 2335555554443 22210 00000
Q ss_pred --CCcccccceEEEEeecccccCcccchhHHHHHHHHHhhhccCccc
Q 027786 75 --VPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQ 119 (219)
Q Consensus 75 --~~~~~~~ttYYfvvAS~kFLl~eEEplEEVLrER~R~Y~E~~Kei 119 (219)
+.-.+..+++.|-|---+=+| |-++|+|-|-.|.|.|++||.
T Consensus 134 snaQLDNEKsnl~YqVDtLKD~L---eE~eeqLaeS~Re~eek~kE~ 177 (405)
T KOG2010|consen 134 SNAQLDNEKNNLIYQVDTLKDVL---EEQEEQLAESYRENEEKSKEL 177 (405)
T ss_pred HHHhhcccccceeeeHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 001123466667665544444 678999999999999999884
No 11
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=22.83 E-value=86 Score=25.56 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=24.9
Q ss_pred ccccEEEecCccccccChhhHh-----h-cCCCcEEEEecCcch
Q 027786 117 KEQDFWLVIEPKFLDKFPNITK-----R-LRRPAVALVSTNGPW 154 (219)
Q Consensus 117 KeiDFWLV~~PaFLeefp~ik~-----k-lpqPavAIVSTd~~f 154 (219)
..-.|-+|.+++-++++.+... + ..-|++.+|+.|..+
T Consensus 49 QPw~fvvv~~~e~~~~l~~~~~~~~~~~~~~Ap~~i~v~~~~~~ 92 (195)
T PRK05365 49 SPARFVFVRSAEAKERLRPALSEGNLAKTLAAPVTAIVAYDTEF 92 (195)
T ss_pred CCeEEEEEeCHHHHHHHHHHHHhcCcchhcCCCEEEEEeeCccH
Confidence 4456888888887776554421 1 235788888888764
No 12
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=22.28 E-value=1.2e+02 Score=25.43 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=34.9
Q ss_pred hhccCccccEEEecCccccccChhh--HhhcCCCcEEEEecCcchhhhhhhhcCeEEeeeecc
Q 027786 112 YGERSKEQDFWLVIEPKFLDKFPNI--TKRLRRPAVALVSTNGPWITFMKLRLDRVLSDSYEA 172 (219)
Q Consensus 112 Y~E~~KeiDFWLV~~PaFLeefp~i--k~klpqPavAIVSTd~~fITwLKLRLe~V~~G~FeA 172 (219)
++...++-|.=+|.+|. ++.--+ ..++.=|.+|||.||.+ -.-+||.+-|...+
T Consensus 121 ~~~~~~~Pdlviv~~~~--~~~~ai~Ea~~l~IP~I~i~Dtn~~-----~~~i~ypIP~Nd~s 176 (193)
T cd01425 121 IKDMFRLPDLVIVLDPR--KEHQAIREASKLGIPVIAIVDTNCD-----PDLIDYPIPANDDS 176 (193)
T ss_pred ccccccCCCEEEEeCCc--cchHHHHHHHHcCCCEEEEecCCCC-----CccceEEeecCCch
Confidence 34567788999998883 232223 37889999999999842 12345555555443
No 13
>KOG4113 consensus Guanine nucleotide exchange factor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.13 E-value=45 Score=27.05 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHhhhccCccccEEEecCccccc------cChhhH----hhcCCCcEEEE
Q 027786 100 HFQELLFERLRNYGERSKEQDFWLVIEPKFLD------KFPNIT----KRLRRPAVALV 148 (219)
Q Consensus 100 plEEVLrER~R~Y~E~~KeiDFWLV~~PaFLe------efp~ik----~klpqPavAIV 148 (219)
|++-...|++-+=....-..|||||+.+=-.| +.+++| +-|-+=.+.++
T Consensus 23 p~~rkk~~~~~d~~~te~~~dF~lVkDmf~FeNVgfSr~v~~~K~LvCADCEkGPiG~~ 81 (99)
T KOG4113|consen 23 PSMRKKLEARTDSDNTEPLSDFFLVKDMFAFENVGFSREVPNLKYLVCADCEKGPIGYH 81 (99)
T ss_pred ccchhhhhhhccccCCCcccceEeeccceeeecceeccccCCeeEEEEeccccCCceeE
Confidence 55556666666666777789999999883333 466665 55555455554
No 14
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=21.92 E-value=56 Score=23.74 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=32.4
Q ss_pred EEecCccccccChhhHhhcCCCcEEEEecCcchhhhhhhhc-CeEEe
Q 027786 122 WLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRL-DRVLS 167 (219)
Q Consensus 122 WLV~~PaFLeefp~ik~klpqPavAIVSTd~~fITwLKLRL-e~V~~ 167 (219)
|+|.+|-..+... .+-.++-.|-.+|+.++..+|-+= +.|+-
T Consensus 1 W~vD~P~~~~~~~----~i~~~~~~iFt~D~~~~~~~~~~G~~~V~y 43 (79)
T PF12996_consen 1 WFVDDPYHTLYSY----SIANSYDYIFTFDRSFVEEYRNLGAENVFY 43 (79)
T ss_pred CceeChhheechh----hhCCCCCEEEEECHHHHHHHHHcCCCCEEE
Confidence 8999998887543 456678899999999999888643 46653
No 15
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=20.78 E-value=4.1e+02 Score=24.43 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=59.8
Q ss_pred EEEeecccccCcccchhHHHHHHHHHhhhccCccccEEEecCccccccChhhHhhcCCCcEEEEecCc-----chhhhhh
Q 027786 85 YFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNG-----PWITFMK 159 (219)
Q Consensus 85 YfvvAS~kFLl~eEEplEEVLrER~R~Y~E~~KeiDFWLV~~PaFLeefp~ik~klpqPavAIVSTd~-----~fITwLK 159 (219)
.+|+|..+=++ .+.++|.| ||.+.|.+.+-+ -=+|.-+.=++++..+.+.++-|.++.+.... +.=+.-+
T Consensus 151 ~~IiARTDa~~--~~g~deAI-~Ra~aY~eAGAD--~ifi~~~~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~ 225 (292)
T PRK11320 151 FVIMARTDALA--VEGLDAAI-ERAQAYVEAGAD--MIFPEAMTELEMYRRFADAVKVPILANITEFGATPLFTTEELAS 225 (292)
T ss_pred eEEEEecCccc--ccCHHHHH-HHHHHHHHcCCC--EEEecCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHH
Confidence 77888877554 24688877 589999998874 44555566677888888999999877665332 3446777
Q ss_pred hhcCeEEeeeec
Q 027786 160 LRLDRVLSDSYE 171 (219)
Q Consensus 160 LRLe~V~~G~Fe 171 (219)
|=..+|..|..-
T Consensus 226 lGv~~v~~~~~~ 237 (292)
T PRK11320 226 AGVAMVLYPLSA 237 (292)
T ss_pred cCCcEEEEChHH
Confidence 888899888654
Done!