Query 027786
Match_columns 219
No_of_seqs 79 out of 81
Neff 2.6
Searched_HMMs 29240
Date Tue Mar 26 02:02:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jsr_A ALL0216 protein; struct 100.0 3.9E-58 1.3E-62 366.6 6.7 104 80-184 2-109 (119)
2 2j9w_A VPS28, VPS28-PROV prote 29.9 8.8 0.0003 29.6 -0.5 22 150-171 13-35 (102)
3 2j9u_A VPS28, vacuolar protein 26.4 11 0.00038 28.8 -0.5 21 151-171 11-32 (96)
4 1loi_A Cyclic 3',5'-AMP specif 21.0 14 0.00048 22.6 -0.7 11 200-210 14-24 (26)
5 2l82_A Designed protein OR32; 15.0 1.1E+02 0.0039 24.9 3.1 51 106-158 42-96 (162)
6 2q3l_A Uncharacterized protein 14.9 1.1E+02 0.0039 22.6 2.9 77 83-165 20-107 (126)
7 1se7_A HOT, homologue of the t 14.0 82 0.0028 23.5 1.8 18 99-116 47-64 (83)
8 2ook_A Hypothetical protein; s 13.5 3.4E+02 0.012 19.9 5.2 83 83-171 20-113 (127)
9 1rrz_A Glycogen synthesis prot 12.6 86 0.003 23.8 1.6 18 99-116 59-76 (86)
10 2id1_A Hypothetical protein; a 12.0 1.5E+02 0.0052 23.2 2.9 28 84-112 35-62 (130)
No 1
>3jsr_A ALL0216 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, NSR236, unknown funct; 1.80A {Nostoc SP} PDB: 3hze_A
Probab=100.00 E-value=3.9e-58 Score=366.59 Aligned_cols=104 Identities=42% Similarity=0.791 Sum_probs=100.2
Q ss_pred ccceEEEEeecccccCcccchhHHHHHHHHHhhhccCccccEEEecCccccc--cChhhHhhcCCCcEEEEecCcchhhh
Q 027786 80 EANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLD--KFPNITKRLRRPAVALVSTNGPWITF 157 (219)
Q Consensus 80 ~~ttYYfvvAS~kFLl~eEEplEEVLrER~R~Y~E~~KeiDFWLV~~PaFLe--efp~ik~klpqPavAIVSTd~~fITw 157 (219)
.|+||||||||++||| +|||||||||||+|||+|+||+||||||+||+||| +|++|++||++|||||||||++||||
T Consensus 2 km~tYyfv~AS~~Fll-eeEpleEvLrER~r~Y~e~~KeiDFWlV~~PaFLeap~~~~i~~kl~~P~~AIVSTd~~fItw 80 (119)
T 3jsr_A 2 KMQTYYYVLASRRFLL-QEEPIEEVLKERTRHYHEQEKEIDFWLVPQPAFLEAPEFADIKAKCPQPAAAIISTNSQFITW 80 (119)
T ss_dssp CCEEEEEEEEEHHHHH-TTSCCHHHHHHHHHHHHHTTCCCCEEEEESBGGGGSGGGHHHHHHSCSSEEEEEESCHHHHHH
T ss_pred CcceEEEEEechhhhc-cCccHHHHHHHHHHHHHhcCCCccEEEecChhhcCchhhHHHHHhCCCCcEEEEecChHHHHH
Confidence 5999999999999998 88999999999999999999999999999999999 69999999999999999999999999
Q ss_pred hhhhcCeEEeeeeccC--ChHHHhhcCCC
Q 027786 158 MKLRLDRVLSDSYEAG--SLEEALASNPA 184 (219)
Q Consensus 158 LKLRLe~V~~G~FeA~--si~dpLaS~~~ 184 (219)
||||||||++|+|+|+ +|||||||+++
T Consensus 81 lKLRLe~V~~G~Feaps~~IpdpLas~~~ 109 (119)
T 3jsr_A 81 LKLRLEYVVTGEFSAPSETIPNPLASLAT 109 (119)
T ss_dssp HHHHHCSCEEEEEEESCSSCSCTTCBCC-
T ss_pred HHHhhhheEEEEEecCcccccchhhhccc
Confidence 9999999999999995 59999999875
No 2
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=29.93 E-value=8.8 Score=29.61 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=18.8
Q ss_pred cCcchhhhh-hhhcCeEEeeeec
Q 027786 150 TNGPWITFM-KLRLDRVLSDSYE 171 (219)
Q Consensus 150 Td~~fITwL-KLRLe~V~~G~Fe 171 (219)
+=..|||.| +|||+++.+.++-
T Consensus 13 ~v~~FIT~mDaLKLn~~a~DqLh 35 (102)
T 2j9w_A 13 IVSLFITVMDKLRLEIRAMDEIQ 35 (102)
T ss_dssp HHHHHHHHHHHHHTTCCBHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHhhh
Confidence 335799999 9999999999885
No 3
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=26.44 E-value=11 Score=28.78 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.4
Q ss_pred Ccchhhhh-hhhcCeEEeeeec
Q 027786 151 NGPWITFM-KLRLDRVLSDSYE 171 (219)
Q Consensus 151 d~~fITwL-KLRLe~V~~G~Fe 171 (219)
=..|||.| +|||+++.+.++-
T Consensus 11 ~~~FIT~mDaLKL~~~a~DqLh 32 (96)
T 2j9u_A 11 TGNFITVMDALKLNYNAKDQLH 32 (96)
T ss_dssp HHHHHHHHHHHHTTCCBHHHHH
T ss_pred HHHHHHHHHHHHhcchhHHhhC
Confidence 35799999 8999999999885
No 4
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=21.05 E-value=14 Score=22.56 Aligned_cols=11 Identities=36% Similarity=1.307 Sum_probs=8.4
Q ss_pred CCCCCceeecc
Q 027786 200 KYEFGWWEAFL 210 (219)
Q Consensus 200 kY~~gWW~~Fl 210 (219)
++.-|||+.|-
T Consensus 14 pwlvgwwdqfk 24 (26)
T 1loi_A 14 PWLVGWWDQFK 24 (26)
T ss_dssp TTGGGGHHHHT
T ss_pred chhhhhHHHhc
Confidence 45679999874
No 5
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=14.99 E-value=1.1e+02 Score=24.87 Aligned_cols=51 Identities=27% Similarity=0.509 Sum_probs=31.3
Q ss_pred HHHHHhhhccCccccEEEecC-ccccccChhhHhhcCCC-cEEEEecC-cchh-hhh
Q 027786 106 FERLRNYGERSKEQDFWLVIE-PKFLDKFPNITKRLRRP-AVALVSTN-GPWI-TFM 158 (219)
Q Consensus 106 rER~R~Y~E~~KeiDFWLV~~-PaFLeefp~ik~klpqP-avAIVSTd-~~fI-TwL 158 (219)
|||+..|+.++ .|.=-|.. ..|-+..-+|-.+.||- .+.||.|| +.|| .|+
T Consensus 42 rerleefekqg--vdvrtvedkedfrenireiwerypqldvvvivttddkewikdfi 96 (162)
T 2l82_A 42 RERLEEFEKQG--VDVRTVEDKEDFRENIREIWERYPQLDVVVIVTTDDKEWIKDFI 96 (162)
T ss_dssp HHHHHHHHTTT--CEEEECCSHHHHHHHHHHHHHHCTTCCEEEEEECCCHHHHHHHH
T ss_pred HHHHHHHHHcC--CceeeeccHHHHHHHHHHHHHhCCCCcEEEEEecCcHHHHHHHH
Confidence 45555665554 45545543 35666678888899985 55666665 5566 454
No 6
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=14.91 E-value=1.1e+02 Score=22.58 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=42.9
Q ss_pred eEEEEeecccccCcccchhHHHHHHHHHhhhccCcc--ccEEEecCccccc-c----ChhhH----hhcCCCcEEEEecC
Q 027786 83 KYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKE--QDFWLVIEPKFLD-K----FPNIT----KRLRRPAVALVSTN 151 (219)
Q Consensus 83 tYYfvvAS~kFLl~eEEplEEVLrER~R~Y~E~~Ke--iDFWLV~~PaFLe-e----fp~ik----~klpqPavAIVSTd 151 (219)
...-+-++-+ |. .|-+++ |..-+...-++... ++.++.. ..|-. . ..+++ ..-.---+||| ||
T Consensus 20 ~vl~v~~~G~-lt--~~d~~~-l~~~l~~~l~~~~~~~i~ll~~~-~~f~G~~~~a~~~d~k~~~~h~~~~~RiAvV-~d 93 (126)
T 2q3l_A 20 FYLAFKAVGK-LT--HEDYEQ-MTPLLESALAGIKTPEIVALIDI-TELDGLSLHAAWDDLKLGLKHGKEFKRVAII-GQ 93 (126)
T ss_dssp EEEEEEEEEE-EC--HHHHHH-HHHHHHHHTTTCCSSCEEEEEEE-EEEEEECHHHHHHHHHHHHHHGGGEEEEEEE-CC
T ss_pred CEEEEEEEee-EC--HHHHHH-HHHHHHHHHHhCCCceEEEEEEe-cCCCCCCHHHHHHHHHhhhhHHhcCCEEEEE-cC
Confidence 3455556666 42 345555 55666665556555 8888877 56643 1 22232 22122357877 57
Q ss_pred cchhhhhhhhcCeE
Q 027786 152 GPWITFMKLRLDRV 165 (219)
Q Consensus 152 ~~fITwLKLRLe~V 165 (219)
+.|+.|+--=...+
T Consensus 94 ~~W~~~~~~~~~~~ 107 (126)
T 2q3l_A 94 GELQEWATRVANWF 107 (126)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhc
Confidence 89998775433333
No 7
>1se7_A HOT, homologue of the theta subunit of DNA polymerase III; E. coli bacteriophage P1, homologue of theta, E. coli DNA polymerase III; NMR {Enterobacteria phage P1} SCOP: a.237.1.1 PDB: 2ido_B*
Probab=14.03 E-value=82 Score=23.47 Aligned_cols=18 Identities=39% Similarity=0.713 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHhhhccC
Q 027786 99 EHFQELLFERLRNYGERS 116 (219)
Q Consensus 99 EplEEVLrER~R~Y~E~~ 116 (219)
|++.+-++||+.||+...
T Consensus 47 e~~R~~F~eRL~~YR~~~ 64 (83)
T 1se7_A 47 ENLRTYFMERLRHYRQLS 64 (83)
T ss_dssp GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788999999999998764
No 8
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=13.49 E-value=3.4e+02 Score=19.94 Aligned_cols=83 Identities=10% Similarity=0.147 Sum_probs=47.9
Q ss_pred eEEEEeecccccCcccchhHHHHHHHHHhhhcc--CccccEEEecCccccc-c----ChhhH----hhcCCCcEEEEecC
Q 027786 83 KYYFVVANAKFMLDEEEHFQELLFERLRNYGER--SKEQDFWLVIEPKFLD-K----FPNIT----KRLRRPAVALVSTN 151 (219)
Q Consensus 83 tYYfvvAS~kFLl~eEEplEEVLrER~R~Y~E~--~KeiDFWLV~~PaFLe-e----fp~ik----~klpqPavAIVSTd 151 (219)
...-+-++-+ |. .|-+++ |...+...-++ ...++.++... .|-- . ..+++ ..-.---+||| ||
T Consensus 20 ~vl~v~~~G~-lt--~eD~~~-l~~~i~~~l~~~~~~~i~lL~~~~-~f~G~~~~A~~~d~k~~~~h~~~~~RiAvV-~d 93 (127)
T 2ook_A 20 FFVTLKAIGT-LT--HEDYLV-ITPMLEGALSQVDQPKVSLFLDAT-ELDGWDLRAAWDDLKLGLKHKSEFERVAIL-GN 93 (127)
T ss_dssp EEEEEEEEEE-EC--HHHHHH-HHHHHHHHHTTCCCSSCCEEEEEE-EEEEECTTCGGGGCCCCCTTSCCEEEEEEE-CC
T ss_pred CEEEEEEeee-EC--HHHHHH-HHHHHHHHHhhccCCCEEEEEEcc-CCCCCCHHHHHHHHHhhhhhHhcCCEEEEE-cC
Confidence 3455666666 42 345553 66666666666 77888777765 6633 1 22222 11112357877 57
Q ss_pred cchhhhhhhhcCeEEeeeec
Q 027786 152 GPWITFMKLRLDRVLSDSYE 171 (219)
Q Consensus 152 ~~fITwLKLRLe~V~~G~Fe 171 (219)
+.|+.|+--=...+..|+..
T Consensus 94 ~~W~~~~~~~~~~~~~~evk 113 (127)
T 2ook_A 94 KDWQEWAAKIGSWFIAGEIK 113 (127)
T ss_dssp SSCCTTTTTGGGGCCEEEEE
T ss_pred hHHHHHHHHHHhhCcCCceE
Confidence 89998776555555555544
No 9
>1rrz_A Glycogen synthesis protein GLGS; all-helical domain, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.7.10.1
Probab=12.56 E-value=86 Score=23.79 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=15.7
Q ss_pred chhHHHHHHHHHhhhccC
Q 027786 99 EHFQELLFERLRNYGERS 116 (219)
Q Consensus 99 EplEEVLrER~R~Y~E~~ 116 (219)
|.+.+.++||+.||....
T Consensus 59 ee~R~~FreRL~~YRq~~ 76 (86)
T 1rrz_A 59 EEHRTWFCARYAWYCQQM 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 788899999999998754
No 10
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=12.03 E-value=1.5e+02 Score=23.22 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=18.0
Q ss_pred EEEEeecccccCcccchhHHHHHHHHHhh
Q 027786 84 YYFVVANAKFMLDEEEHFQELLFERLRNY 112 (219)
Q Consensus 84 YYfvvAS~kFLl~eEEplEEVLrER~R~Y 112 (219)
=||||||.+--- .-..+.+-++++++..
T Consensus 35 DyfVIaTg~S~r-qv~Aiad~v~~~lk~~ 62 (130)
T 2id1_A 35 QRMIVATGDSNR-QVKALANSVQVKLKEA 62 (130)
T ss_dssp SEEEEEECSSHH-HHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCCHH-HHHHHHHHHHHHHHHc
Confidence 389999998542 3355566666666543
Done!