Query 027786
Match_columns 219
No_of_seqs 79 out of 81
Neff 2.6
Searched_HMMs 13730
Date Tue Mar 26 02:02:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027786.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027786hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1muma_ c.1.12.7 (A:) 2-methyl 39.2 23 0.0017 28.4 5.6 81 85-170 151-236 (289)
2 d1mv8a2 c.2.1.6 (A:1-202) GDP- 36.1 26 0.0019 25.5 5.0 59 100-158 129-187 (202)
3 d2idob1 a.237.1.1 (B:2-76) Hom 30.5 9.4 0.00068 26.8 1.5 20 98-117 45-64 (75)
4 d2ae9a1 a.237.1.1 (A:1-76) The 22.9 20 0.0015 25.0 2.1 19 98-116 45-63 (76)
5 d1d6ta_ d.14.1.2 (A:) RNase P 22.7 54 0.0039 22.3 4.4 57 85-141 45-103 (117)
6 d2ooka1 c.13.2.2 (A:2-126) Hyp 20.3 29 0.0021 24.6 2.5 82 83-171 18-111 (125)
7 d2oo2a1 a.8.11.1 (A:1-75) Hypo 15.7 21 0.0015 24.6 0.8 16 101-116 1-16 (75)
8 d2q3la1 c.13.2.2 (A:1-125) Unc 15.3 25 0.0018 24.9 1.2 79 83-168 19-109 (125)
9 d1w9ha1 c.55.3.10 (A:93-408) H 14.6 1.3E+02 0.0098 22.9 5.6 54 99-152 132-202 (316)
10 d1u0ua2 c.95.1.2 (A:238-393) D 14.3 69 0.005 23.1 3.5 86 83-180 28-113 (156)
No 1
>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}
Probab=39.18 E-value=23 Score=28.43 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=60.4
Q ss_pred EEEeecccccCcccchhHHHHHHHHHhhhccCccccEEEecCccccccChhhHhhcCCCcEEEEecCc-----chhhhhh
Q 027786 85 YFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNG-----PWITFMK 159 (219)
Q Consensus 85 YfvvAS~kFLl~eEEplEEVLrER~R~Y~E~~KeiDFWLV~~PaFLeefp~ik~klpqPavAIVSTd~-----~fITwLK 159 (219)
.+|+|..+-+. .+-++|.|+ |.+-|.|-+ -|-+++..+.=++++..+.+.++-|..+.+.... ++-..-+
T Consensus 151 ~~IiARTDa~~--~~g~~eAi~-R~~aY~eAG--AD~vf~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~p~~s~~eL~~ 225 (289)
T d1muma_ 151 FVIMARTDALA--VEGLDAAIE-RAQAYVEAG--AEMLFPEAITELAMYRQFADAVQVPILANITEFGATPLFTTDELRS 225 (289)
T ss_dssp SEEEEEECCHH--HHCHHHHHH-HHHHHHHTT--CSEEEETTCCCHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHHH
T ss_pred hhheecccccc--ccCHHHHHH-HHHHhhhcC--CcEEEecCCCCHHHHHHHHHhcCCCEEEeecCcCCCccchHHHHHH
Confidence 45778877664 357999887 999999988 5777787666555788888999999987665432 4556777
Q ss_pred hhcCeEEeeee
Q 027786 160 LRLDRVLSDSY 170 (219)
Q Consensus 160 LRLe~V~~G~F 170 (219)
+-..+|.-|..
T Consensus 226 ~Gv~~v~~~~~ 236 (289)
T d1muma_ 226 AHVAMALYPLS 236 (289)
T ss_dssp TTCSEEEESSH
T ss_pred hccceEEechH
Confidence 77888887654
No 2
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=36.08 E-value=26 Score=25.53 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHhhhccCccccEEEecCccccccChhhHhhcCCCcEEEEecCcchhhhh
Q 027786 100 HFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFM 158 (219)
Q Consensus 100 plEEVLrER~R~Y~E~~KeiDFWLV~~PaFLeefp~ik~klpqPavAIVSTd~~fITwL 158 (219)
--++++++.++.........||.++-+|+|+.+=..+..-...|-+-|=+.|+.-...+
T Consensus 129 tt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~~G~a~~d~~~~~~iViG~~~~~~~~~~ 187 (202)
T d1mv8a2 129 TVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLL 187 (202)
T ss_dssp HHHHTHHHHHHHHHSCCBTTTBEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHH
T ss_pred chhhhhhhhhhccccccccccccchhhhhhhcccchhhhhcCCCeEEEEeCCHHHHHHH
Confidence 45566666666667777888999999999999755555554444443334565554444
No 3
>d2idob1 a.237.1.1 (B:2-76) Homolog of theta (HOT) {Bacteriophage P1 [TaxId: 10678]}
Probab=30.46 E-value=9.4 Score=26.75 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=17.2
Q ss_pred cchhHHHHHHHHHhhhccCc
Q 027786 98 EEHFQELLFERLRNYGERSK 117 (219)
Q Consensus 98 EEplEEVLrER~R~Y~E~~K 117 (219)
-|+|.+-++||+.||....+
T Consensus 45 Pe~LR~yF~eRL~~yR~~s~ 64 (75)
T d2idob1 45 PENLRTYFMERLRHYRQLSL 64 (75)
T ss_dssp CGGGHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 38999999999999987654
No 4
>d2ae9a1 a.237.1.1 (A:1-76) Theta subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
Probab=22.93 E-value=20 Score=24.98 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=16.6
Q ss_pred cchhHHHHHHHHHhhhccC
Q 027786 98 EEHFQELLFERLRNYGERS 116 (219)
Q Consensus 98 EEplEEVLrER~R~Y~E~~ 116 (219)
-|+|.+-++||+.||....
T Consensus 45 Pe~LR~yF~eRL~~yR~~s 63 (76)
T d2ae9a1 45 PEHLRSWFRERLIAHRLAS 63 (76)
T ss_dssp CGGGHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3899999999999998654
No 5
>d1d6ta_ d.14.1.2 (A:) RNase P protein {Staphylococcus aureus [TaxId: 1280]}
Probab=22.67 E-value=54 Score=22.27 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=37.4
Q ss_pred EEEeecccccCcc-cchhHHHHHHHHHhhhccCccccEEEecCccccc-cChhhHhhcC
Q 027786 85 YFVVANAKFMLDE-EEHFQELLFERLRNYGERSKEQDFWLVIEPKFLD-KFPNITKRLR 141 (219)
Q Consensus 85 YfvvAS~kFLl~e-EEplEEVLrER~R~Y~E~~KeiDFWLV~~PaFLe-efp~ik~klp 141 (219)
.-+++|.++=--. ---+--.|||=.|.....-..-|+=++..|..++ .+.+|.+.+.
T Consensus 45 ~G~~vsKKvg~AV~RNriKR~lRe~~R~~~~~~~~~d~Vvi~~~~~~~~~~~el~~~l~ 103 (117)
T d1d6ta_ 45 LGISVSKKLGNAVLRNKIKRAIRENFKVHKSHILAKDIIVIARQPAKDMTTLQIQNSLE 103 (117)
T ss_dssp EEEECCSSSCSTTHHHHHHHHHHHHHHHGGGTCCSSCEEEEECSGGGGCCTTHHHHHHT
T ss_pred EEEEEeccCcchHHHHHHHHHHHHHHHhhhccCCCceEEEEEccccccCCHHHHHHHHH
Confidence 3445566632100 1345566777777666665678999999999988 6888876654
No 6
>d2ooka1 c.13.2.2 (A:2-126) Hypothetical protein Sfri0576 {Shewanella frigidimarina [TaxId: 56812]}
Probab=20.33 E-value=29 Score=24.58 Aligned_cols=82 Identities=9% Similarity=0.162 Sum_probs=42.1
Q ss_pred eEEEEeecccccCcccchhHHHHHHHHHhhhccCccccE-EEecCccccc-c----ChhhH------hhcCCCcEEEEec
Q 027786 83 KYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDF-WLVIEPKFLD-K----FPNIT------KRLRRPAVALVST 150 (219)
Q Consensus 83 tYYfvvAS~kFLl~eEEplEEVLrER~R~Y~E~~KeiDF-WLV~~PaFLe-e----fp~ik------~klpqPavAIVST 150 (219)
.+.-+-+|-+ |. . +-++ .|..-+...-++...+.. +++.-+.|-. + +.+++ +++ .-+||| |
T Consensus 18 ~ii~~~~~G~-lt-~-~D~~-~~~~~le~~l~~~~~~~v~l~id~~~F~G~~~~A~~ed~k~~~~h~~~~--~RiAiV-~ 90 (125)
T d2ooka1 18 FFVTLKAIGT-LT-H-EDYL-VITPMLEGALSQVDQPKVSLFLDATELDGWDLRAAWDDLKLGLKHKSEF--ERVAIL-G 90 (125)
T ss_dssp EEEEEEEEEE-EC-H-HHHH-HHHHHHHHHHTTCCCSSCCEEEEEEEEEEECTTCGGGGCCCCCTTSCCE--EEEEEE-C
T ss_pred cEEEEEEEEE-EC-H-HHHH-HHHHHHHHHHHhcCCceEEEEEEeCCCCCCCHHHHHHHHHHHHhhhccc--cEEEEE-c
Confidence 4556666766 42 2 3443 344455555555444443 4444355522 1 22222 223 357877 6
Q ss_pred CcchhhhhhhhcCeEEeeeec
Q 027786 151 NGPWITFMKLRLDRVLSDSYE 171 (219)
Q Consensus 151 d~~fITwLKLRLe~V~~G~Fe 171 (219)
|+.|+.|+-.=...+..++..
T Consensus 91 d~~W~~~~~~~~~~f~~~evk 111 (125)
T d2ooka1 91 NKDWQEWAAKIGSWFIAGEIK 111 (125)
T ss_dssp CSSCCTTTTTGGGGCCEEEEE
T ss_pred ChHHHHHHHHHHccccCCceE
Confidence 889998875545555555443
No 7
>d2oo2a1 a.8.11.1 (A:1-75) Hypothetical protein AF1782 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=15.70 E-value=21 Score=24.55 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=13.0
Q ss_pred hHHHHHHHHHhhhccC
Q 027786 101 FQELLFERLRNYGERS 116 (219)
Q Consensus 101 lEEVLrER~R~Y~E~~ 116 (219)
+||.|+||+..|-+.-
T Consensus 1 ~e~el~eriekYi~~~ 16 (75)
T d2oo2a1 1 LEEELRRETLKWLERI 16 (75)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH
Confidence 6899999999997544
No 8
>d2q3la1 c.13.2.2 (A:1-125) Uncharacterized protein Shew3102 {Shewanella loihica [TaxId: 359303]}
Probab=15.32 E-value=25 Score=24.91 Aligned_cols=79 Identities=14% Similarity=0.219 Sum_probs=43.6
Q ss_pred eEEEEeecccccCcccchhHHHHHHHHHhhhccCccccEEEecC-ccccc-c----ChhhH------hhcCCCcEEEEec
Q 027786 83 KYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIE-PKFLD-K----FPNIT------KRLRRPAVALVST 150 (219)
Q Consensus 83 tYYfvvAS~kFLl~eEEplEEVLrER~R~Y~E~~KeiDFWLV~~-PaFLe-e----fp~ik------~klpqPavAIVST 150 (219)
.+.-+-+|-+ |. +|-+++ |..-++.+.++...+...++.+ +.|-. + +.+++ ++.. -+||| |
T Consensus 19 ~ii~~~~~G~-lt--~~D~~~-~~~~l~~~l~~~~~~~v~~li~~~~F~G~~~~A~~ed~k~~~~h~~~f~--RiAiV-~ 91 (125)
T d2q3la1 19 FYLAFKAVGK-LT--HEDYEQ-MTPLLESALAGIKTPEIVALIDITELDGLSLHAAWDDLKLGLKHGKEFK--RVAII-G 91 (125)
T ss_dssp EEEEEEEEEE-EC--HHHHHH-HHHHHHHHTTTCCSSCEEEEEEEEEEEEECHHHHHHHHHHHHHHGGGEE--EEEEE-C
T ss_pred cEEEEEEEee-EC--HHHHHH-HHHHHHHHHHhcCCceEEEEEEcCCCCCCCHHHHHHHHHhHHhhhcccc--EEEEE-c
Confidence 3445556666 42 345554 4455777777666666655543 66632 1 23333 3333 47777 6
Q ss_pred CcchhhhhhhhcCeEEee
Q 027786 151 NGPWITFMKLRLDRVLSD 168 (219)
Q Consensus 151 d~~fITwLKLRLe~V~~G 168 (219)
|+.|+.|+--=...+..+
T Consensus 92 d~~W~~~~~~~~~~f~~~ 109 (125)
T d2q3la1 92 QGELQEWATRVANWFTPG 109 (125)
T ss_dssp CSHHHHHHHHHHHHHCSS
T ss_pred ChHHHHHHHHHHhhccCC
Confidence 889998875433333333
No 9
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=14.63 E-value=1.3e+02 Score=22.90 Aligned_cols=54 Identities=11% Similarity=0.130 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHhhhccCcc----ccEEE--ecCccccc-cChhhHhhc----------CCCcEEEEecCc
Q 027786 99 EHFQELLFERLRNYGERSKE----QDFWL--VIEPKFLD-KFPNITKRL----------RRPAVALVSTNG 152 (219)
Q Consensus 99 EplEEVLrER~R~Y~E~~Ke----iDFWL--V~~PaFLe-efp~ik~kl----------pqPavAIVSTd~ 152 (219)
+.|++.|++.+..|.++++. +-+-. +....+.+ |+.++++.+ ..|-.++|.-++
T Consensus 132 ~~l~~~~~~~l~~~~~~~~~~~p~~Ii~~r~g~~~~~~~~e~~~~~~ai~~~~~~~~~~~~pk~~~I~V~K 202 (316)
T d1w9ha1 132 TYLKSTIKKVVYGFKKSNPDWDVEKLTLHVSGKRPKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNE 202 (316)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCCCEEEEEEESSCCCCHHHHHHHHHHHHHHHHHTTSSCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcceEEEECCcccchHHHHHHHHHHHHHHHHHhhccCCCccEEEEEEEe
Confidence 57899999999888766543 22222 13444555 566666444 346666554443
No 10
>d1u0ua2 c.95.1.2 (A:238-393) Dihydropinosylvin synthase {Scots pine (Pinus sylvestris) [TaxId: 3349]}
Probab=14.25 E-value=69 Score=23.07 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=51.5
Q ss_pred eEEEEeecccccCcccchhHHHHHHHHHhhhccCccccEEEecCccccccChhhHhhcCCCcEEEEecCcchhhhhhhhc
Q 027786 83 KYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRL 162 (219)
Q Consensus 83 tYYfvvAS~kFLl~eEEplEEVLrER~R~Y~E~~KeiDFWLV~~PaFLeefp~ik~klpqPavAIVSTd~~fITwLKLRL 162 (219)
-|.+.+...=|-+ -.+.+.++++|=++..+-...+||+|++-+.-- .=+-.+.++|.=| -++.-.+|.-||
T Consensus 28 G~~~~l~~~Vp~~-v~~~i~~~~~~~l~~~~~~~~did~~i~Hqgg~-~Ild~v~~~L~L~------~~k~~~s~~~l~- 98 (156)
T d1u0ua2 28 GLTFQLKGAVPDL-ISANIENCMVEAFSQFKISDWNKLFWVVHPGGR-AILDRVEAKLNLD------PTKLIPTRHVMS- 98 (156)
T ss_dssp EEEEEECTTHHHH-HHHHHHHHHHHHHGGGTCCCGGGSEEEECCSCH-HHHHHHHHHHTCC------TTTTHHHHHHHH-
T ss_pred cEEEEEcchhHHH-HHHHHHHHHHHHHHHcCCChhhCceEeecCCcH-HHHHHHHHHhCCC------cccchhhHHHHh-
Confidence 4666665554544 357888888888888888889999999875432 1133455566432 233333332221
Q ss_pred CeEEeeeeccCChHHHhh
Q 027786 163 DRVLSDSYEAGSLEEALA 180 (219)
Q Consensus 163 e~V~~G~FeA~si~dpLa 180 (219)
--|+-.+.||+-+|.
T Consensus 99 ---~~GN~sSasip~~L~ 113 (156)
T d1u0ua2 99 ---EYGNMSSACVHFILD 113 (156)
T ss_dssp ---HHCBCGGGHHHHHHH
T ss_pred ---hcCCCCcccHHHHHH
Confidence 136666677777664
Done!