BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027787
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZE4|VP322_ARATH Vacuolar protein sorting-associated protein 32 homolog 2
OS=Arabidopsis thaliana GN=VPS32.2 PE=1 SV=1
Length = 219
Score = 327 bits (839), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 194/220 (88%), Positives = 202/220 (91%), Gaps = 2/220 (0%)
Query: 1 MFTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAI 60
M RLFGKPKQE NAL TLDKLNETLEMLEKKEKVLLKKA EVEKAK+YS+AKNKRAAI
Sbjct: 1 MMNRLFGKPKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAI 60
Query: 61 QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNID 120
QCLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNID
Sbjct: 61 QCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNID 120
Query: 121 DVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATT 180
DVDKTMDEINEQTENMKQIQEAL+TP+GAAADFDEDEL AEL+ELE ELE QLLQPATT
Sbjct: 121 DVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDELAAELDELESEELESQLLQPATT 180
Query: 181 APAAP-VQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
AP P V VPAGRQ ARPVPQK RTAEE+ELAALQAEMAL
Sbjct: 181 APPLPSVPVPAGRQPARPVPQK-RTAEEEELAALQAEMAL 219
>sp|O82197|VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 1
OS=Arabidopsis thaliana GN=VPS32.1 PE=1 SV=1
Length = 213
Score = 324 bits (830), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 185/220 (84%), Positives = 194/220 (88%), Gaps = 8/220 (3%)
Query: 1 MF-TRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAA 59
MF RLFGKPKQET+ L TLDKLNETLEMLEKKE VLLKKA+ EVEKAK++S+AKNKRAA
Sbjct: 1 MFMNRLFGKPKQETSTLQTLDKLNETLEMLEKKENVLLKKATGEVEKAKEFSRAKNKRAA 60
Query: 60 IQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNI 119
IQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNI
Sbjct: 61 IQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNI 120
Query: 120 DDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPAT 179
DDVDKTMDEINEQTENMKQIQEALS P G A DFDEDELEAEL+ELEGAELEEQLLQP
Sbjct: 121 DDVDKTMDEINEQTENMKQIQEALSAPFG-ANDFDEDELEAELDELEGAELEEQLLQP-- 177
Query: 180 TAPAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
P+ VP G + AR QKQ TAEEDELAALQAEMAL
Sbjct: 178 ----VPIHVPQGNKPARAPAQKQPTAEEDELAALQAEMAL 213
>sp|Q9P7F7|SNF7_SCHPO Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=snf7 PE=3 SV=1
Length = 222
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 127/221 (57%), Gaps = 5/221 (2%)
Query: 2 FTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQ 61
F R FG + + T+ + E L + +KKE+VL ++ + + E A+ + NKR A+
Sbjct: 4 FLRWFGGNRSKDTTKDTIVRFQEMLALYDKKEEVLERQIAEQTEIARKNATT-NKRLALT 62
Query: 62 CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDD 121
LKRK+++E ++ ++ + I Q+ ++ A ET+ A+R GA MK++Q+ + D
Sbjct: 63 ALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADK 122
Query: 122 VDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLL---QPA 178
VD+ MD+I +Q ++I +STP+G A+ DEDEL EL+EL+ EL+ ++L +P
Sbjct: 123 VDQIMDKIRDQQTISEEISTMISTPVGLNAEIDEDELANELDELQQMELDSKMLGAEKPP 182
Query: 179 TTAPAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
PA P VP+ + + + Q EE+EL LQAE +L
Sbjct: 183 VHTPAVPA-VPSQVKDLPSISKPQELDEEEELRKLQAEFSL 222
>sp|Q6BSH2|SNF7_DEBHA Vacuolar-sorting protein SNF7 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SNF7 PE=3 SV=2
Length = 226
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 115/228 (50%), Gaps = 11/228 (4%)
Query: 1 MFTRLFGKPKQETNAL--TTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRA 58
M+ LFG KQ+ + +L E ++ML KK L + + + A+ Y NK
Sbjct: 1 MWNYLFGGNKQQKKEYPKKAIVELREHIQMLNKKRSHLESQIADQDALARKYITT-NKAL 59
Query: 59 AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATN 118
A LKRK+ YE + ++ N + Q+ +EGA ET+ A++ GA MK + +
Sbjct: 60 AKNALKRKKGYEANLMKIENQIDSLETQLTSIEGANLNLETMKAMKQGAQAMKQIHGEYD 119
Query: 119 IDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPA 178
+D V+ TMD+I EQ E +I EA+S P+G DEDEL+ EL L+ E E + PA
Sbjct: 120 VDKVENTMDDIREQVELADEISEAISRPVGTEF-VDEDELDEELAMLQEEEKEHKQQTPA 178
Query: 179 TTAPAAPVQVPAGRQQARPVPQKQRTA---EEDE----LAALQAEMAL 219
AP A V P P K + A E+DE L ALQAEM L
Sbjct: 179 QKAPVAKVSAPEEEMPDFPTVNKNKPAASTEDDEDEEALKALQAEMGL 226
>sp|Q86H98|CHMP4_DICDI Charged multivesicular body protein 4 OS=Dictyostelium discoideum
GN=chmp4 PE=3 SV=1
Length = 215
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 85/145 (58%)
Query: 4 RLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCL 63
+LFGKPK + + T+ KL TL+MLEK++ L K E EKAK K KR A+ CL
Sbjct: 2 KLFGKPKPKQDTQETIGKLRLTLDMLEKRQTFLQDKLEKEQEKAKVLVSQKRKREALLCL 61
Query: 64 KRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVD 123
K++ ++ ++ +L ++ Q+ LE AK E ++++R GA +++ + ID VD
Sbjct: 62 KKRNNFQNEVTKLQGSYDTLNQQIFALENAKMNMEIMNSMRDGARSLRELHGHLTIDKVD 121
Query: 124 KTMDEINEQTENMKQIQEALSTPIG 148
++EI EQ E ++I A+S P+G
Sbjct: 122 DVIEEIQEQMEIHEEISNAISQPLG 146
>sp|Q5XGW6|CHM4B_XENLA Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b
PE=2 SV=1
Length = 222
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 119/213 (55%), Gaps = 8/213 (3%)
Query: 1 MFTRLFG---KPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKR 57
+ +LFG K + + + KL +T EML KK++ L KK E+ AK + KNKR
Sbjct: 3 LIGKLFGTGGKGAKGPSPQEAIQKLRDTEEMLAKKQEFLEKKIEQELVTAKKHG-TKNKR 61
Query: 58 AAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKAT 117
AA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA
Sbjct: 62 AALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNM 121
Query: 118 NIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLL-- 175
+I+ VD+ M +I +Q E ++I +A+S P+G DFDEDEL AELEELE EL++ LL
Sbjct: 122 DIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDELMAELEELEQEELDKNLLEV 181
Query: 176 QPATTAPAAPVQVPAGRQQARPVPQKQRTAEED 208
Q T P VPA A+PV +KQ ++D
Sbjct: 182 QGPETVPLP--NVPAASLPAKPVKKKQEEDDDD 212
>sp|Q6GL11|CHM4B_XENTR Charged multivesicular body protein 4b OS=Xenopus tropicalis
GN=chmp4b PE=2 SV=1
Length = 222
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 119/213 (55%), Gaps = 8/213 (3%)
Query: 1 MFTRLFG---KPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKR 57
+ +LFG K + + + KL +T EML KK++ L KK E+ AK + KNKR
Sbjct: 3 LIGKLFGTGGKGAKGPSPQEAIQKLRDTEEMLTKKQEFLEKKIEQELVTAKKHG-TKNKR 61
Query: 58 AAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKAT 117
AA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA
Sbjct: 62 AALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNM 121
Query: 118 NIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLL-- 175
+I+ VD+ M +I +Q E ++I +A+S P+G DFDEDEL AELEELE EL++ LL
Sbjct: 122 DIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDELMAELEELEQEELDKNLLEV 181
Query: 176 QPATTAPAAPVQVPAGRQQARPVPQKQRTAEED 208
Q T P VPA A+PV +KQ ++D
Sbjct: 182 QGPETVPLP--NVPAAVLPAKPVKKKQEEDDDD 212
>sp|Q6IQ73|CHM4C_DANRE Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c
PE=2 SV=1
Length = 224
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 106/188 (56%), Gaps = 6/188 (3%)
Query: 19 LDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGN 78
+ KL ET EML KK+ L KK E+ AK + KNKRAA+Q LKRK+ YE+Q+ Q+
Sbjct: 24 IQKLRETEEMLAKKQDFLEKKIDAELLIAK-KNGTKNKRAALQALKRKKRYEKQLAQIDG 82
Query: 79 FQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQ 138
I Q LE A TE + + A MK + +ID VD M +I EQ E ++
Sbjct: 83 TLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQE 142
Query: 139 IQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVQVPAGRQQARPV 198
I +A+S P+G +FDEDEL AELEELE EL++ LLQ + P VP + P+
Sbjct: 143 ISDAISRPVGFGEEFDEDELMAELEELEQEELDKDLLQ-----ISGPEDVPLPNVPSNPL 197
Query: 199 PQKQRTAE 206
P+K A+
Sbjct: 198 PKKTAVAQ 205
>sp|Q5RBR3|CHMP5_PONAB Charged multivesicular body protein 5 OS=Pongo abelii GN=CHMP5 PE=2
SV=1
Length = 219
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 15/200 (7%)
Query: 2 FTRLFGK------PKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKN 55
RLFGK P T+ + T+D E+++ + L K +++K ++ AKN
Sbjct: 1 MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMRE-GPAKN 59
Query: 56 --KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAM 113
K+ A++ LK+KR+YEQQ + L + ++ K T TVDA++ G MK
Sbjct: 60 MVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKA 119
Query: 114 QKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAEL--- 170
K ID ++ D++ + E+ +IQEALS G + DED+LEAEL+ L G EL
Sbjct: 120 YKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYG-TPELDEDDLEAELDAL-GDELLAD 177
Query: 171 -EEQLLQPATTAPAAPVQVP 189
+ L A +APA P VP
Sbjct: 178 EDSSYLDEAASAPAIPEGVP 197
>sp|Q9NZZ3|CHMP5_HUMAN Charged multivesicular body protein 5 OS=Homo sapiens GN=CHMP5 PE=1
SV=1
Length = 219
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 15/200 (7%)
Query: 2 FTRLFGK------PKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKN 55
RLFGK P T+ + T+D E+++ + L K +++K ++ AKN
Sbjct: 1 MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMRE-GPAKN 59
Query: 56 --KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAM 113
K+ A++ LK+KR+YEQQ + L + ++ K T TVDA++ G MK
Sbjct: 60 MVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKA 119
Query: 114 QKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAEL--- 170
K ID ++ D++ + E+ +IQEALS G + DED+LEAEL+ L G EL
Sbjct: 120 YKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYG-TPELDEDDLEAELDAL-GDELLAD 177
Query: 171 -EEQLLQPATTAPAAPVQVP 189
+ L A +APA P VP
Sbjct: 178 EDSSYLDEAASAPAIPEGVP 197
>sp|P0CR54|SNF7_CRYNJ Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SNF7 PE=3 SV=1
Length = 220
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 2/219 (0%)
Query: 1 MFTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAI 60
+ G+ +A + L + L MLEKKE+ L KK E++KAK + NKR A+
Sbjct: 4 WMSYFTGRKDTRESARDAIVGLRQQLLMLEKKEEFLQKKIEEEMKKAKANATG-NKRLAM 62
Query: 61 QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNID 120
L++K+ +E +++++ +L + Q+ +E A ET+ A++ GA +K + +
Sbjct: 63 AALRQKKAHENELDRIAGTRLTLETQVNAIESANLNAETMVAMKKGADALKGIHSNLTAE 122
Query: 121 DVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATT 180
VD TMD+I EQ + I +A+S P+G DED+L+ ELE LE +L+++ L A
Sbjct: 123 GVDATMDKIREQMDLTNDISDAISNPVGMGIVLDEDDLKEELEALEQEQLDDR-LAGADR 181
Query: 181 APAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
P+ P G+ R ++ EE +L LQAE+A+
Sbjct: 182 VPSHLPASPVGQTTGRAAVEEDEDDEEAQLRKLQAELAM 220
>sp|P0CR55|SNF7_CRYNB Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SNF7 PE=3 SV=1
Length = 220
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 2/219 (0%)
Query: 1 MFTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAI 60
+ G+ +A + L + L MLEKKE+ L KK E++KAK + NKR A+
Sbjct: 4 WMSYFTGRKDTRESARDAIVGLRQQLLMLEKKEEFLQKKIEEEMKKAKANATG-NKRLAM 62
Query: 61 QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNID 120
L++K+ +E +++++ +L + Q+ +E A ET+ A++ GA +K + +
Sbjct: 63 AALRQKKAHENELDRIAGTRLTLETQVNAIESANLNAETMVAMKKGADALKGIHSNLTAE 122
Query: 121 DVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATT 180
VD TMD+I EQ + I +A+S P+G DED+L+ ELE LE +L+++ L A
Sbjct: 123 GVDATMDKIREQMDLTNDISDAISNPVGMGIVLDEDDLKEELEALEQEQLDDR-LAGADR 181
Query: 181 APAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
P+ P G+ R ++ EE +L LQAE+A+
Sbjct: 182 VPSHLPASPVGQTTGRAAVEEDEDDEEAQLRKLQAELAM 220
>sp|Q9D8B3|CHM4B_MOUSE Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b
PE=2 SV=2
Length = 224
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 113/197 (57%), Gaps = 5/197 (2%)
Query: 19 LDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGN 78
+ +L +T EML KK++ L KK E+ AK + KNKRAA+Q LKRK+ YE+Q+ Q+
Sbjct: 26 IQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDG 84
Query: 79 FQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQ 138
I Q LE A TE + + A MKA +ID VD+ M +I +Q E ++
Sbjct: 85 TLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEE 144
Query: 139 IQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVQVPAGRQQARPV 198
I A+S P+G +FDEDEL AELEELE EL++ LL+ + P V +P A P
Sbjct: 145 ISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLE--ISGPET-VPLPNVPSVALPS 201
Query: 199 -PQKQRTAEEDELAALQ 214
P K++ E+D++ L+
Sbjct: 202 KPAKKKEEEDDDMKELE 218
>sp|Q9BY43|CHM4A_HUMAN Charged multivesicular body protein 4a OS=Homo sapiens GN=CHMP4A
PE=1 SV=3
Length = 222
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Query: 4 RLFGKPKQETNALT--TLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQ 61
RLFGK K+E + KL ET ++L KK++ L +K E++ AK Y KNKRAA+Q
Sbjct: 6 RLFGKGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYG-TKNKRAALQ 64
Query: 62 CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDD 121
L+RK+ +EQQ+ Q + Q +E A E + + A +MK + +ID
Sbjct: 65 ALRRKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKKAYQDMDIDK 124
Query: 122 VDKTMDEINEQTENMKQIQEALSTPIGAAAD 152
VD+ M +I EQ E +QI +A+S P+G D
Sbjct: 125 VDELMTDITEQQEVAQQISDAISRPMGFGDD 155
>sp|Q9H444|CHM4B_HUMAN Charged multivesicular body protein 4b OS=Homo sapiens GN=CHMP4B
PE=1 SV=1
Length = 224
Score = 84.0 bits (206), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 113/197 (57%), Gaps = 5/197 (2%)
Query: 19 LDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGN 78
+ +L +T EML KK++ L KK E+ AK + KNKRAA+Q LKRK+ YE+Q+ Q+
Sbjct: 26 IQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDG 84
Query: 79 FQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQ 138
I Q LE A TE + + A MKA +ID VD+ M +I +Q E ++
Sbjct: 85 TLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEE 144
Query: 139 IQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVQVPAGRQQARPV 198
I A+S P+G +FDEDEL AELEELE EL++ LL+ + P V +P A P
Sbjct: 145 ISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLE--ISGPET-VPLPNVPSIALPS 201
Query: 199 -PQKQRTAEEDELAALQ 214
P K++ E+D++ L+
Sbjct: 202 KPAKKKEEEDDDMKELE 218
>sp|Q4QQV8|CHMP5_RAT Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5
PE=2 SV=1
Length = 219
Score = 84.0 bits (206), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 101/200 (50%), Gaps = 15/200 (7%)
Query: 2 FTRLFGK------PKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKN 55
R FGK P T+ + T+D E+++ + L K +++K ++ AKN
Sbjct: 1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMRE-GPAKN 59
Query: 56 --KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAM 113
K+ A++ LK+KR+YEQQ + L + ++ K T TVDA++ G MK
Sbjct: 60 MVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKA 119
Query: 114 QKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAEL--- 170
K ID ++ D++ + E+ +IQEAL G + DED+LEAEL+ L G EL
Sbjct: 120 YKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYG-TPELDEDDLEAELDAL-GDELLAD 177
Query: 171 -EEQLLQPATTAPAAPVQVP 189
+ L A +APA P VP
Sbjct: 178 EDSSYLDEAASAPAIPEGVP 197
>sp|Q9D7S9|CHMP5_MOUSE Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=2
SV=1
Length = 219
Score = 84.0 bits (206), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 101/200 (50%), Gaps = 15/200 (7%)
Query: 2 FTRLFGK------PKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKN 55
R FGK P T+ + T+D E+++ + L K +++K ++ AKN
Sbjct: 1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMRE-GPAKN 59
Query: 56 --KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAM 113
K+ A++ LK+KR+YEQQ + L + ++ K T TVDA++ G MK
Sbjct: 60 MVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKA 119
Query: 114 QKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAEL--- 170
K ID ++ D++ + E+ +IQEAL G + DED+LEAEL+ L G EL
Sbjct: 120 YKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYG-TPELDEDDLEAELDAL-GDELLAD 177
Query: 171 -EEQLLQPATTAPAAPVQVP 189
+ L A +APA P VP
Sbjct: 178 EDSSYLDEAASAPAIPEGVP 197
>sp|Q7ZVC4|CHM4B_DANRE Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b
PE=2 SV=1
Length = 220
Score = 83.6 bits (205), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Query: 19 LDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGN 78
+ +L ET EML KK++ L KK E+ AK + KNKRAA+Q LKRK+ YE+Q+ Q+
Sbjct: 24 IQRLRETEEMLTKKQEFLEKKIEQELVTAKK-NGTKNKRAALQALKRKKRYEKQLAQIDG 82
Query: 79 FQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQ 138
I Q LE A TE + + A MKA +ID VD+ M +I EQ E ++
Sbjct: 83 TLSTIEFQREALENAHTNTEVIKNMGYAAKAMKAAHDNMDIDKVDELMQDIIEQQELAQE 142
Query: 139 IQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVQVPAGRQQARP 197
I +A+S P+G +FDEDEL AELEELE EL++ LL+ P VP+ +RP
Sbjct: 143 ISDAISKPVGFGEEFDEDELLAELEELEQEELDKNLLEIGDNVPLP--NVPSTSLPSRP 199
>sp|Q5ZHP5|CHM4B_CHICK Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B
PE=2 SV=1
Length = 227
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 80/140 (57%), Gaps = 1/140 (0%)
Query: 19 LDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGN 78
+ +L +T EML KK++ L KK E+ A+ + KNKRAA+Q LKRK+ YE+Q+ Q+
Sbjct: 28 IQRLRDTEEMLSKKQEFLEKKIEQELAAARKHG-TKNKRAALQALKRKKRYEKQLAQIDG 86
Query: 79 FQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQ 138
I Q LE A TE + + A MKA +ID VD+ M +I EQ E +
Sbjct: 87 TLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADE 146
Query: 139 IQEALSTPIGAAADFDEDEL 158
I A+S P+G +FDEDEL
Sbjct: 147 ISTAISKPVGFGEEFDEDEL 166
>sp|Q5FW29|CHMP5_XENTR Charged multivesicular body protein 5 OS=Xenopus tropicalis
GN=chmp5 PE=2 SV=1
Length = 219
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 103/202 (50%), Gaps = 19/202 (9%)
Query: 2 FTRLFGK--PKQETNALT-TLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSK------ 52
RLFGK PK + LT + ++ E ++KK + + E+ K KD K
Sbjct: 1 MNRLFGKSKPKVPPSTLTDCISNVDSRSESIDKK----ISRLDAELVKYKDQMKKMREGP 56
Query: 53 AKN--KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTM 110
+KN K+ A++ LK+KR+YEQQ + L + ++ K T TVDA++ GA M
Sbjct: 57 SKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQTNYAIQSLKDTKTTVDAMKVGAKEM 116
Query: 111 KAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAEL 170
K K ID ++ D++ + EN +IQEALS G + DED+LEAEL+ L L
Sbjct: 117 KKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYG-TPEIDEDDLEAELDALGDELL 175
Query: 171 EE---QLLQPATTAPAAPVQVP 189
+ L A +APA P VP
Sbjct: 176 LDDDTSYLDEAASAPAIPEGVP 197
>sp|Q96CF2|CHM4C_HUMAN Charged multivesicular body protein 4c OS=Homo sapiens GN=CHMP4C
PE=1 SV=1
Length = 233
Score = 80.5 bits (197), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 109/199 (54%), Gaps = 9/199 (4%)
Query: 19 LDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGN 78
L +L ET EML KK++ L + E+ AK + +NKRAA+Q LKRK+ +E+Q+ Q+
Sbjct: 26 LVRLRETEEMLGKKQEYLENRIQREIALAKKHG-TQNKRAALQALKRKKRFEKQLTQIDG 84
Query: 79 FQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQ 138
I Q LE + TE + + A MK++ + +++ +D M EI EQ + ++
Sbjct: 85 TLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDDLMQEITEQQDIAQE 144
Query: 139 IQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQ------PATTAPAAPVQVPAGR 192
I EA S +G DFDEDEL AELEELE EL +++ P+++ PA P + P
Sbjct: 145 ISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMTNIRLPNVPSSSLPAQPNRKPGMS 204
Query: 193 QQAR--PVPQKQRTAEEDE 209
AR QR EED+
Sbjct: 205 STARRSRAASSQRAEEEDD 223
>sp|A2VDY3|CHM4A_BOVIN Charged multivesicular body protein 4a OS=Bos taurus GN=CHMP4A PE=2
SV=1
Length = 222
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 2 FTRLFGKPKQETNALT--TLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAA 59
RLFG+ K+E + KL ET ++L KK++ L +K E++ AK + KNKRAA
Sbjct: 4 LGRLFGRGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIEQELQAAKKHG-TKNKRAA 62
Query: 60 IQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNI 119
+Q L+RK+ EQQ+ Q + Q +E A E + + A +K + +I
Sbjct: 63 LQALRRKKRLEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQGLKKAYQDMDI 122
Query: 120 DDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 154
D VD+ M +I EQ E +QI +A+S P+G D D
Sbjct: 123 DKVDELMADITEQQEVAQQISDAISRPVGFGDDVD 157
>sp|Q6DD52|CHMP5_XENLA Charged multivesicular body protein 5 OS=Xenopus laevis GN=chmp5
PE=2 SV=1
Length = 219
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 103/205 (50%), Gaps = 25/205 (12%)
Query: 2 FTRLFGK------PKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSK--- 52
R+FGK P T+ +T +D E++E KK + + E+ K KD K
Sbjct: 1 MNRIFGKSKPKVPPPTLTDCITNVDGRAESIE---KK----ISRLDAELIKYKDQMKKMR 53
Query: 53 ---AKN--KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGA 107
+KN K+ A++ LK+KR+YEQQ + L + ++ K T TVDA++ GA
Sbjct: 54 EGPSKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTKTTVDAMKVGA 113
Query: 108 STMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEG 167
MK K ID ++ D++ + EN +IQEALS G + DED+LEAEL+ L
Sbjct: 114 KEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYG-TPEIDEDDLEAELDALGD 172
Query: 168 AELEE---QLLQPATTAPAAPVQVP 189
L + L A +APA P VP
Sbjct: 173 ELLLDDDTSYLDEAASAPAIPEGVP 197
>sp|Q753W3|SNF7_ASHGO Vacuolar-sorting protein SNF7 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SNF7 PE=3
SV=1
Length = 237
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 5/156 (3%)
Query: 1 MFTRLFG----KPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNK 56
M++ LFG K K+E L+ L E +++L KK+ L + + + E A+ + NK
Sbjct: 1 MWSYLFGSGNAKQKKELPKKAILE-LREHIQLLSKKQAHLQTQMTSQEESARHFLSKGNK 59
Query: 57 RAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKA 116
A LKRK+++E Q+ ++ + Q+ +E A ET+ A++ GAS MK + +
Sbjct: 60 NMAKAALKRKKVFESQLLKIDKQVDSLEQQLYSIENANLNLETMKAMKQGASAMKHIHEG 119
Query: 117 TNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAAD 152
+++ VD+TMDEI EQ E ++I EA+S P+ +
Sbjct: 120 LDVERVDETMDEIREQVELGEEISEAISRPLYTGVN 155
>sp|Q6GNN8|CHM4C_XENLA Charged multivesicular body protein 4c OS=Xenopus laevis GN=chmp4c
PE=2 SV=1
Length = 227
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 114/198 (57%), Gaps = 4/198 (2%)
Query: 19 LDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGN 78
L KL ET EML KK++ L KK +E+ AK + KNKRAA+Q LK+K+ E+Q+ Q+
Sbjct: 30 LFKLRETEEMLTKKQEYLEKKIELELATAKKHG-TKNKRAALQALKKKKRLEKQLAQIDG 88
Query: 79 FQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQ 138
I Q LE + TE + + A MKA + +++ +D M +I+EQ + ++
Sbjct: 89 TLSTIEFQREALENSHTNTEVLKNMGYAAKAMKAAHENMDLEKIDDLMQDIHEQQDVAQE 148
Query: 139 IQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAP-VQVPAGRQQARP 197
I +A+S P+G +FDEDEL ELEELE +L Q+ P+ P ++P+ + +RP
Sbjct: 149 ISDAISRPVGFGDEFDEDELLEELEELEQEDLNSQMAN--VNLPSVPSSKLPSTKLPSRP 206
Query: 198 VPQKQRTAEEDELAALQA 215
+++ ++D++ L A
Sbjct: 207 ASSRKKVEDDDDMQMLAA 224
>sp|Q5ABD0|SNF7_CANAL Vacuolar-sorting protein SNF7 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=SNF7 PE=3 SV=1
Length = 226
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 2/150 (1%)
Query: 1 MFTRLFGKPKQETNAL--TTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRA 58
M+ FG Q+ L + +L E ++ L KK+ L ++ + + A+ Y +K
Sbjct: 1 MWGYFFGGNSQQKKDLPKKAIVELREHIQTLNKKKNHLQQQMDDQDQLARKYVSSKQTTL 60
Query: 59 AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATN 118
A LKRK+ YE + ++ N + Q+I +EGA ET+ A++ GA MK + +
Sbjct: 61 AKSALKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQGAKAMKQIHGEYD 120
Query: 119 IDDVDKTMDEINEQTENMKQIQEALSTPIG 148
+D V+ TMDEI EQ E +I EA+S P+G
Sbjct: 121 VDKVEDTMDEIREQVELADEISEAISRPVG 150
>sp|Q6FW96|SNF7_CANGA Vacuolar-sorting protein SNF7 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SNF7
PE=3 SV=1
Length = 228
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 1 MFTRLFGKPKQETNAL--TTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRA 58
M+ +FG L + +L E + +L KK+ L + + + +A+ + NK
Sbjct: 1 MWASIFGGKGNTNKELPKKAIIELREHINLLSKKQAHLQGQITAQENEARKFLTRGNKTM 60
Query: 59 AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATN 118
A LK+K++YE Q+ +L + + Q+ +E A ET+ A++ GA MK++ +
Sbjct: 61 AKNALKKKKVYEGQLVKLESQMDSLEQQLFSIESANLNLETMRAMKQGAKAMKSIHSGLD 120
Query: 119 IDDVDKTMDEINEQTENMKQIQEALSTPIGAAAD 152
ID VD+TMDEI EQ E ++I +A+S P+ A+
Sbjct: 121 IDRVDETMDEIREQVELGEEISDAISRPLYTGAN 154
>sp|Q7T339|CHMP5_DANRE Charged multivesicular body protein 5 OS=Danio rerio GN=chmp5 PE=2
SV=1
Length = 220
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 11/205 (5%)
Query: 2 FTRLFGK------PKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDY-SKAK 54
R+FG+ P T+ ++ +D E+++ + L K +++K +D SK
Sbjct: 1 MNRIFGRGKPKGPPPNLTDCISGVDSRAESVDKKIARLDAELMKYKDQMKKMRDGPSKNM 60
Query: 55 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQ 114
K+ A++ LK+KR+YE Q +QL + ++ K T TV+A++ GA MK
Sbjct: 61 VKQKAMRVLKQKRMYEGQRDQLMQQSFNMEQANYTIQTLKDTKTTVEAMKIGAKEMKKAY 120
Query: 115 KATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAE---LEELEGAELE 171
K ID ++ D++ + E+ ++QEALS G + DED+LEAE L + + +
Sbjct: 121 KNVKIDQIEDLQDQLEDMMEDANEVQEALSRSYG-TPEIDEDDLEAELDALGDELLLDDD 179
Query: 172 EQLLQPATTAPAAPVQVPAGRQQAR 196
L A++APA P P R R
Sbjct: 180 NSYLDEASSAPAIPEGAPGDRTTNR 204
>sp|Q9D7F7|CHM4C_MOUSE Charged multivesicular body protein 4c OS=Mus musculus GN=Chmp4c
PE=2 SV=1
Length = 232
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Query: 19 LDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGN 78
L +L ET EML KK++ L + E+ AK + ++NKRAA+Q LKRK+ +E+Q+ Q+
Sbjct: 26 LARLRETEEMLAKKQEYLENRIQRELALAKKHG-SQNKRAALQALKRKKRFEKQLTQVDG 84
Query: 79 FQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQ 138
I Q LE + TE + + A MKA+ +++ +D M +I EQ + ++
Sbjct: 85 TLSTIEFQREALENSHTNTEVLRNMGFAAKAMKAVHDNMDLNKIDDLMQDITEQQDIAQE 144
Query: 139 IQEALSTPIGAAADFD 154
I EA S + A FD
Sbjct: 145 ISEAFSQRVQFADGFD 160
>sp|P39929|SNF7_YEAST Vacuolar-sorting protein SNF7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SNF7 PE=1 SV=1
Length = 240
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 1 MFTRLFG----KPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNK 56
M++ LFG K + + + +L E + +L KK+ L + + + +A+ + NK
Sbjct: 1 MWSSLFGWTSSNAKNKESPTKAIVRLREHINLLSKKQSHLRTQITNQENEARIFLTKGNK 60
Query: 57 RAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKA 116
A LK+K+ EQ + ++ + Q+ +E A ET+ A++ GA MK +
Sbjct: 61 VMAKNALKKKKTIEQLLSKVEGTMESMEQQLFSIESANLNLETMRAMQEGAKAMKTIHSG 120
Query: 117 TNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAAD 152
+ID VD+TMDEI EQ E +I +A+S P+ A+
Sbjct: 121 LDIDKVDETMDEIREQVELGDEISDAISRPLITGAN 156
>sp|Q6CJL0|SNF7_KLULA Vacuolar-sorting protein SNF7 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=SNF7 PE=3 SV=1
Length = 232
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 1 MFTRLFGKPKQ--ETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRA 58
M+ FG KQ E +D L E +++L KK+ L + + + AK ++ NK
Sbjct: 1 MWGYFFGTSKQQKELPKKAIVD-LREHIQLLNKKQAHLQTQIDQQQQLAKKSLQSGNKNN 59
Query: 59 AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATN 118
A LK+K+LYE Q+++L + + Q+ +E A ET+ A++ GAS MK + K +
Sbjct: 60 AKTYLKKKKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKGLD 119
Query: 119 IDDVDKTMDEINEQTENMKQIQEALSTPI 147
+D VD TMDEI EQ E ++I EA+S P+
Sbjct: 120 LDKVDDTMDEIREQVELNQEISEAISKPL 148
>sp|Q569C1|CHM4C_RAT Charged multivesicular body protein 4c OS=Rattus norvegicus
GN=Chmp4c PE=2 SV=1
Length = 232
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 102/182 (56%), Gaps = 10/182 (5%)
Query: 19 LDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGN 78
L +L E EM+ KK++ L + E+ AK + ++NKRAA+Q LKRK+ +E+Q+ Q+
Sbjct: 26 LARLREIEEMMAKKQEYLENRIQRELALAKKHG-SQNKRAALQALKRKKRFEKQLTQIDG 84
Query: 79 FQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQ 138
I Q LE + TE + + A MKA+ + +++ +D M +I EQ + ++
Sbjct: 85 TLSTIEFQREALENSHTNTEVLRNMGFAAKAMKAVHENMDLNKIDDLMQDITEQQDIAQE 144
Query: 139 IQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQ------PATTAPAAPVQ---VP 189
I EA S + A FDEDEL AELEELE EL +++ P+++ PA P + VP
Sbjct: 145 ISEAFSQRVQFADGFDEDELLAELEELEQEELNKKMTSMELPNVPSSSLPAQPSRKAGVP 204
Query: 190 AG 191
+
Sbjct: 205 SS 206
>sp|Q9VVI9|CHMP5_DROME Charged multivesicular body protein 5 OS=Drosophila melanogaster
GN=CG6259 PE=1 SV=2
Length = 226
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 19/222 (8%)
Query: 2 FTRLFG--KPKQETNALT-TLDKLNETLEMLEKKEKVL---LKKASVEVEKAKDYSKAKN 55
RLFG KPK+ +L + ++ +E+K L L+K ++ K ++ AKN
Sbjct: 1 MNRLFGRGKPKEPGPSLNDCIAGVDARATNIEEKISNLEAELRKYREQMSKMRE-GPAKN 59
Query: 56 --KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAM 113
K+ A++ LK+K+ YEQQ E L N + + K T TV A++ G MK
Sbjct: 60 SVKQKALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLKDTQATVAAMKDGVKQMKTE 119
Query: 114 QKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAEL--- 170
K NID ++ D++ + E ++QEAL G + D+D+L+AEL+ L G E+
Sbjct: 120 YKKINIDQIEDIQDDMADMFEQADEVQEALGRTYG-MPEVDDDDLQAELDAL-GDEIALD 177
Query: 171 -EEQLLQPATTAPAAPVQVPAGRQQARPVPQKQRTAEEDELA 211
+ L AP AP + P VP K T E DE
Sbjct: 178 DDTSYLDDVVKAPEAPSREPGADSI---VPGKS-TIETDEFG 215
>sp|Q54JK4|CHMP5_DICDI Charged multivesicular body protein 5 OS=Dictyostelium discoideum
GN=chmp5 PE=3 SV=1
Length = 215
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 56 KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQK 115
K+ AI+ L++K++YE+Q +Q+ + + E + T TV A++ GA MK K
Sbjct: 61 KQKAIRVLQQKKMYERQRDQMASTSFNMEQTKFATESMRDTITTVSAMKQGAKDMKTQLK 120
Query: 116 ATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLL 175
I+DVD DE+ + + +IQE+L DE ELEAEL + G ELE +
Sbjct: 121 HIKIEDVDDMQDEMQDLLDYNNEIQESLGRAYQTPDTLDESELEAELMSM-GEELELEAS 179
Query: 176 QPAT-TAPAAPVQVP 189
P+ P+ P P
Sbjct: 180 MPSYLMTPSVPTTDP 194
>sp|Q7T0X5|CHMP7_XENLA Charged multivesicular body protein 7 OS=Xenopus laevis GN=chmp7
PE=2 SV=1
Length = 422
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 5/148 (3%)
Query: 45 EKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALR 104
E+A+ Y++A NK A++CL++++L E++I +L N Q I + + A+ + V A +
Sbjct: 252 EEARTYNRAGNKNQALRCLRKRKLVERRITELQNKQDNIQGILERISAAETDRKVVSAYQ 311
Query: 105 TGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEE 164
G S +K K ++ + +D+I E + + + LS+ AD D D+LE EL E
Sbjct: 312 MGVSALKQALKDVTLEKAESIVDQIQEYCDLQDDLSQTLSSV--TDADVDSDDLERELNE 369
Query: 165 LEGAELEEQLLQPATTAPAAPVQVPAGR 192
+ E+++ P+ PV + R
Sbjct: 370 ILQ---NEEMIIDLPDVPSGPVIISPKR 394
>sp|Q86K93|CHMP7_DICDI Charged multivesicular body protein 7 OS=Dictyostelium discoideum
GN=chmp7 PE=3 SV=1
Length = 477
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 89/163 (54%), Gaps = 7/163 (4%)
Query: 8 KPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKR 67
+P QET+ + KL T E L+++E LL K+ + K K A+ LK+K+
Sbjct: 241 QPIQETDF--GILKLQTTYETLKQQESKLLTDIEEISNTIKESIRIKQKNHALLQLKKKK 298
Query: 68 LYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMD 127
L E +E+ IH+ + +E AK+ + +++L TG ST+K + + ++D VD +D
Sbjct: 299 LLESILEKRATASTNIHEILFSIESAKSNQQIIESLCTGVSTLKKVNQEISVDQVDSILD 358
Query: 128 EINEQTENMKQIQEALSTPIG-----AAADFDEDELEAELEEL 165
+ + N ++I +A+ + ++AD DED+LE EL+++
Sbjct: 359 DYQDAITNQREIDDAMKSGFNSVESLSSADIDEDQLEKELDQM 401
>sp|Q5FW14|CHMP7_XENTR Charged multivesicular body protein 7 OS=Xenopus tropicalis
GN=chmp7 PE=2 SV=1
Length = 468
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 11/151 (7%)
Query: 45 EKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALR 104
E+A+ Y++A NK A++CL++++L E++I +L N Q + + + A+ + V A +
Sbjct: 252 EEARTYNRAGNKHQALRCLRKRKLLERRITELQNKQDTVQGILERIAAAETDRKVVSAYQ 311
Query: 105 TGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAA--ADFDEDELEAEL 162
G S +K K ++ + +D+I E + +Q+ LS + + AD D ++LE EL
Sbjct: 312 MGVSALKLALKDVTMEKAESIVDQIQEYCD----LQDDLSQTLASVSDADIDSEDLEKEL 367
Query: 163 EE-LEGAELEEQLLQPATTAPAAPVQVPAGR 192
+ L+ E+ L P+ PV + R
Sbjct: 368 NDILQNKEMIVDL----PDVPSGPVVISPQR 394
>sp|P59074|CG301_HUMAN Putative protein CGI-301 OS=Homo sapiens GN=CGI-301 PE=5 SV=1
Length = 171
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 28 MLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQM 87
ML KK++ L KK +E+ KNK AA+Q LKRK+ YE+Q+ Q+ I Q
Sbjct: 1 MLSKKQEFLEKK----IEQ---RHGTKNKPAALQALKRKKRYEKQLAQIDGTLSTIEFQQ 53
Query: 88 IMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 147
LE A TE + + + A KA +ID VD+ M +I +Q E ++I A+S P+
Sbjct: 54 QALENANTNTEVLKNMGSAAKAKKAAHDNMDIDKVDELMQDIADQQELGEEISTAISKPV 113
Query: 148 GAAADFD 154
G D
Sbjct: 114 GFGEKSD 120
>sp|Q9FY89|VP202_ARATH Vacuolar protein sorting-associated protein 20 homolog 2
OS=Arabidopsis thaliana GN=VPS20.2 PE=1 SV=1
Length = 216
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 7/142 (4%)
Query: 42 VEVEK--AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTET 99
+E EK A+D + K K A+ LK+KR E+ ++Q+ + + + Q+ +E
Sbjct: 39 IEAEKQAARDLIREKRKDRALLALKKKRTQEELLKQVDQWLINVEQQLADIELTSKQKAV 98
Query: 100 VDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADF-DEDEL 158
++L+ G + +KA+Q N+DDV K MD+ T K Q+ LS +G DE+E+
Sbjct: 99 FESLKQGNNAIKAIQSEVNLDDVQKLMDD----TAEAKAYQDELSAILGEKLSAEDEEEI 154
Query: 159 EAELEELEGAELEEQLLQPATT 180
AE + LE + E + + TT
Sbjct: 155 LAEFDNLESLLIVEDMPEVPTT 176
>sp|P0C149|SNF7_MAGO7 Vacuolar-sorting protein SNF7 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=SNF7 PE=3 SV=1
Length = 226
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 11/156 (7%)
Query: 69 YEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDE 128
+Q + Q+G + +I+ +E A ET++A++ M+ + ++ VD+TMD+
Sbjct: 77 LDQTLSQIGTLEQQIN----AIESANINMETLEAMKKAGKAMEDIHGKLTVEKVDETMDK 132
Query: 129 INEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVQ- 187
+ EQ ++I A++ D+ +LE ELE +E +L+E++L+ T + +Q
Sbjct: 133 LREQNALSEEIVNAITNNQLGNEAIDDADLEDELEAMEQEQLDEKILKTGTGPVSDAIQR 192
Query: 188 VPAGRQQARPVPQKQRTAEED----ELAALQAEMAL 219
+PA + K T EED EL LQAEMA+
Sbjct: 193 LPAAAN--GELKGKATTVEEDDEEAELRKLQAEMAM 226
>sp|Q8GXN6|VP201_ARATH Vacuolar protein sorting-associated protein 20 homolog 1
OS=Arabidopsis thaliana GN=VPS20.1 PE=1 SV=1
Length = 219
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 42 VEVEK--AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTET 99
+E EK A+D + K K A+ L++KR E+ ++Q+ + + + Q+ +E
Sbjct: 39 IEAEKQAARDLIREKRKDRALLALRKKRTQEELLKQVDQWVINVEQQLTDIELTSKQKAV 98
Query: 100 VDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADF-DEDEL 158
++L+ G S +KA+Q ++DDV K MD+ T + K Q+ L+ +G DE+++
Sbjct: 99 FESLKQGNSAIKAIQSELDLDDVQKLMDD----TADAKAYQDELNAILGEKLSAEDEEDI 154
Query: 159 EAELEELEG 167
AE + LE
Sbjct: 155 LAEFDNLES 163
>sp|Q54KZ4|CHMP6_DICDI Charged multivesicular body protein 6 OS=Dictyostelium discoideum
GN=chmp6 PE=3 SV=2
Length = 218
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 5/126 (3%)
Query: 42 VEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQI-EQLGNFQLRIHDQMIMLEGAKATTETV 100
+E+ AK+ SKA K A+ LK+K+ E+ + E N Q I + + +E A+
Sbjct: 43 LEIAIAKECSKAGKKNQALLALKKKKYQEKMLDESFANLQ-NIEELIANVEQAEIQVRIF 101
Query: 101 DALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEA 160
++L+ G ++K +QK +++DV+ M+E E + I EALS G + +ED+L
Sbjct: 102 ESLKQGNESLKEIQKEMSLEDVENLMEETAEAIQYQNDISEALS---GKFSKEEEDDLLN 158
Query: 161 ELEELE 166
EL+E+E
Sbjct: 159 ELDEME 164
>sp|Q503V0|CHMP6_DANRE Charged multivesicular body protein 6 OS=Danio rerio GN=chmp6 PE=2
SV=3
Length = 206
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 75 QLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTE 134
Q+ N + + D +E A+ + ++ L+ G +K M + +I++V+K MDE ++ E
Sbjct: 80 QISNLERMVQD----IEFAQIEMKVIEGLKVGNDCLKKMHEVLSIEEVEKIMDETHDAIE 135
Query: 135 NMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQ-PATTAPAAPVQVPAG-R 192
KQI E L+ G+ DE+ + AELE + E + +L + P P P Q P +
Sbjct: 136 YQKQIDEMLA---GSLTQEDEEAVLAELEAITQGEADLELPEVPGEELPEVPEQEPVREK 192
Query: 193 QQARPVPQKQRTA 205
++ + P+++ A
Sbjct: 193 ERVKKKPEREMVA 205
>sp|Q8IL52|YSNF1_PLAF7 Uncharacterized protein PF14_0397 OS=Plasmodium falciparum (isolate
3D7) GN=PF14_0397 PE=3 SV=2
Length = 229
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 54 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAM 113
+NK A I +++K++YE E Q I + + + +T AL+ + +K
Sbjct: 62 RNKAANI--IQKKKVYENNKESTMGIQFNIDQIKYANDNVQLSIDTYKALKNTSKVLKKN 119
Query: 114 QKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQ 173
K NI+ ++K D++ + E+ K+I LS+ + DE E++AEL +E + L+E
Sbjct: 120 IKKVNINKIEKLQDDLFDYIEDTKEIGNILSSSYDIPLNLDEQEIDAELALIEDSILDEN 179
Query: 174 LLQ 176
+ Q
Sbjct: 180 VEQ 182
>sp|Q6CBS3|SNF7_YARLI Vacuolar-sorting protein SNF7 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=SNF7 PE=3 SV=1
Length = 215
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 90 LEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGA 149
LE A ET+ A++ GA MK + NID VDK MDE +Q +++ EA+S P
Sbjct: 87 LETANLNLETMKAMQEGAKAMKQIHGNMNIDKVDKIMDETRDQVALSEEVSEAISRPYAN 146
Query: 150 AADFDEDE----------LEAELEELEGAELEEQLLQPATTAPAAPVQVPA 190
A D +E E LE EL + + + P PAAP QVPA
Sbjct: 147 AYDDEELEDELEALEQETLEGELTNAGHVKQDGVQVTPHDL-PAAPNQVPA 196
>sp|Q8R1T1|CHMP7_MOUSE Charged multivesicular body protein 7 OS=Mus musculus GN=Chmp7 PE=1
SV=1
Length = 451
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 23/170 (13%)
Query: 27 EMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQ 86
++L +K + L +++ E+A+ +A K+ A++ LK K+ E++IE L H +
Sbjct: 249 QLLSRKVESLSQESERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEAL-------HAK 301
Query: 87 MIMLEG------AKATTETV-DALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQI 139
+ ++G A T + V +A + G +K K ++ + +D+I E + ++
Sbjct: 302 LDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEV 361
Query: 140 QEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVQVP 189
+ L+ + DFD +ELE EL + LLQ TT P + ++ P
Sbjct: 362 SQTLAGGVTNGLDFDSEELEKEL---------DILLQDTTTEPLSLLETP 402
>sp|Q96FZ7|CHMP6_HUMAN Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1
SV=3
Length = 201
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 19/207 (9%)
Query: 5 LFGKPKQETNALTTLDK----LNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAI 60
LFG+ KQ + +T DK L + + L + +K + ++ E A+ + K A
Sbjct: 4 LFGRKKQ--SRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAK 61
Query: 61 QCLKRKRLYEQQIEQLGNFQLRIHDQMIM-LEGAKATTETVDALRTGASTMKAMQKATNI 119
LK+KR EQ +++ N Q+ + M+ +E + + ++ L+ G + M + +I
Sbjct: 62 LLLKKKRYQEQLLDRTEN-QISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSI 120
Query: 120 DDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPAT 179
++V++ +DE E E +QI E L A F +++ +A LEEL A +EQ+ P
Sbjct: 121 EEVERILDETQEAVEYQRQIDELL------AGSFTQEDEDAILEEL-SAITQEQIELPEV 173
Query: 180 TAPAAPVQVPAGRQQARPVPQKQRTAE 206
+ P ++P PV + R AE
Sbjct: 174 PSEPLPEKIPEN----VPVKARPRQAE 196
>sp|Q5ZJB7|CHMP7_CHICK Charged multivesicular body protein 7 OS=Gallus gallus GN=CHMP7
PE=2 SV=1
Length = 448
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 37/172 (21%)
Query: 41 SVEVEKAKD----YSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEG---- 92
S E EK KD +A K+ A++CLK KR E++IE+L H ++ ++G
Sbjct: 257 SQEAEKCKDDARSACRAGKKQLALRCLKSKRRTERRIEEL-------HSKLDAVQGILDR 309
Query: 93 --AKATTETV-DALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGA 149
A T + V +A + G +K K ++ + +D+I E + ++ + L+
Sbjct: 310 IYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAENLVDQIQELCDTQDEVAQTLAGAGVN 369
Query: 150 AADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVQVPAGRQQARPVPQK 201
+ D +ELE EL + LLQ + P PVPQK
Sbjct: 370 GLEMDSEELEKEL---------DSLLQDSAKEPV----------HLHPVPQK 402
>sp|Q5R861|CHMP6_PONAB Charged multivesicular body protein 6 OS=Pongo abelii GN=CHMP6 PE=2
SV=3
Length = 201
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 19/207 (9%)
Query: 5 LFGKPKQETNALTTLDK----LNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAI 60
LFG+ KQ + +T DK L + + L + +K + ++ E A+ + K A
Sbjct: 4 LFGRKKQ--SRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAK 61
Query: 61 QCLKRKRLYEQQIEQLGNFQLRIHDQMIM-LEGAKATTETVDALRTGASTMKAMQKATNI 119
LK+KR EQ +++ N Q+ + M+ +E + + ++ L+ G + M + +I
Sbjct: 62 LLLKKKRYQEQLLDRTEN-QISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSI 120
Query: 120 DDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPAT 179
++V++ +DE E E +QI E L A F +++ +A LEEL A +EQ+ P
Sbjct: 121 EEVERILDETQEAVEYQRQIDELL------AGSFTQEDEDAILEEL-SAITQEQIELPEV 173
Query: 180 TAPAAPVQVPAGRQQARPVPQKQRTAE 206
+ P ++P + PV + R AE
Sbjct: 174 PSEPLPEKIP----EDVPVKARPRQAE 196
>sp|Q8WUX9|CHMP7_HUMAN Charged multivesicular body protein 7 OS=Homo sapiens GN=CHMP7 PE=1
SV=1
Length = 453
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 27/202 (13%)
Query: 9 PKQETNALTTLD----KLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLK 64
P+ + + + +D +L ++ ++L +K + L ++A E+A+ +A K+ A++ LK
Sbjct: 227 PRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLALRSLK 286
Query: 65 RKRLYEQQIEQLGNFQLRIHDQMIMLEG------AKATTETV-DALRTGASTMKAMQKAT 117
K+ E++IE L H ++ ++G A T + V +A + G +K K
Sbjct: 287 AKQRTEKRIEAL-------HAKLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDV 339
Query: 118 NIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQP 177
++ + +D+I E + ++ + L+ + DFD +ELE EL + LLQ
Sbjct: 340 TVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEKEL---------DILLQD 390
Query: 178 ATTAPAAPVQVPAGRQQARPVP 199
T P P R VP
Sbjct: 391 TTKEPLDLPDNPRNRHFTNSVP 412
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.124 0.318
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,303,135
Number of Sequences: 539616
Number of extensions: 2836939
Number of successful extensions: 19507
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 747
Number of HSP's that attempted gapping in prelim test: 18666
Number of HSP's gapped (non-prelim): 1426
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)