Query 027789
Match_columns 219
No_of_seqs 134 out of 1037
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 15:13:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00175 diphthine synthase; P 100.0 8E-53 1.7E-57 370.4 25.4 206 2-207 63-269 (270)
2 KOG3123 Diphthine synthase [Tr 100.0 8.3E-53 1.8E-57 352.8 19.2 210 1-210 61-270 (272)
3 COG1798 DPH5 Diphthamide biosy 100.0 8.9E-49 1.9E-53 335.9 20.6 194 1-210 61-255 (260)
4 TIGR00522 dph5 diphthine synth 100.0 1.6E-42 3.4E-47 303.1 24.2 190 3-207 63-254 (257)
5 COG2875 CobM Precorrin-4 methy 100.0 2.4E-34 5.1E-39 244.9 17.1 178 2-208 61-244 (254)
6 PRK04160 diphthine synthase; P 100.0 4.2E-33 9E-38 243.3 23.8 192 3-210 63-256 (258)
7 COG0007 CysG Uroporphyrinogen- 100.0 9.5E-32 2.1E-36 232.2 16.2 164 3-197 68-235 (244)
8 PRK06136 uroporphyrin-III C-me 100.0 4.9E-27 1.1E-31 202.9 17.7 160 5-194 69-235 (249)
9 TIGR01465 cobM_cbiF precorrin- 99.9 1.6E-26 3.5E-31 197.2 19.5 162 4-194 59-225 (229)
10 PRK07168 bifunctional uroporph 99.9 1E-26 2.2E-31 218.8 18.3 158 7-195 71-234 (474)
11 TIGR01469 cobA_cysG_Cterm urop 99.9 5.4E-26 1.2E-30 194.6 18.8 160 5-194 66-231 (236)
12 PRK10637 cysG siroheme synthas 99.9 2E-25 4.3E-30 209.3 19.2 170 4-206 281-454 (457)
13 PRK15478 cbiH cobalt-precorrin 99.9 4.7E-25 1E-29 191.4 17.8 160 6-195 60-224 (241)
14 PRK15473 cbiF cobalt-precorrin 99.9 8.8E-25 1.9E-29 190.8 17.4 165 3-196 67-236 (257)
15 PLN02625 uroporphyrin-III C-me 99.9 2.7E-24 5.9E-29 188.3 18.9 161 4-194 80-247 (263)
16 PRK05948 precorrin-2 methyltra 99.9 2.4E-24 5.2E-29 186.7 15.9 150 5-194 81-234 (238)
17 COG2243 CobF Precorrin-2 methy 99.9 5.1E-24 1.1E-28 183.3 14.2 150 3-193 77-228 (234)
18 PRK05990 precorrin-2 C(20)-met 99.9 1.4E-23 3.1E-28 181.9 15.7 149 4-194 86-236 (241)
19 PRK05765 precorrin-3B C17-meth 99.9 3.9E-22 8.4E-27 173.3 18.8 152 7-194 63-224 (246)
20 PF00590 TP_methylase: Tetrapy 99.9 4E-22 8.7E-27 166.9 16.2 142 4-178 62-210 (210)
21 PRK05991 precorrin-3B C17-meth 99.9 1.1E-21 2.4E-26 170.7 17.1 152 10-194 66-228 (250)
22 TIGR01467 cobI_cbiL precorrin- 99.9 2.4E-21 5.3E-26 166.0 16.5 149 5-193 79-229 (230)
23 TIGR01466 cobJ_cbiH precorrin- 99.9 1.6E-20 3.4E-25 161.7 19.2 160 7-196 60-224 (239)
24 PRK05576 cobalt-precorrin-2 C( 99.9 5.1E-21 1.1E-25 164.2 15.7 146 4-193 78-225 (229)
25 PRK05787 cobalt-precorrin-6Y C 99.9 1.1E-20 2.3E-25 159.2 17.0 149 7-194 59-208 (210)
26 KOG1527 Uroporphyrin III methy 99.9 4.7E-22 1E-26 178.3 9.1 157 7-194 324-484 (506)
27 PRK08284 precorrin 6A synthase 99.8 1.2E-20 2.7E-25 164.9 12.4 129 6-179 93-226 (253)
28 TIGR02467 CbiE precorrin-6y C5 99.8 1.5E-20 3.2E-25 158.6 12.5 148 3-189 54-203 (204)
29 TIGR02434 CobF precorrin-6A sy 99.8 6E-20 1.3E-24 160.2 12.2 129 5-179 91-225 (249)
30 PRK14994 SAM-dependent 16S rib 99.8 1.5E-18 3.2E-23 154.3 15.8 138 4-179 72-215 (287)
31 COG1010 CobJ Precorrin-3B meth 99.7 8.2E-16 1.8E-20 131.9 14.5 157 4-194 60-227 (249)
32 COG2241 CobL Precorrin-6B meth 99.6 2.4E-15 5.3E-20 128.0 13.5 148 5-194 58-206 (210)
33 COG0313 Predicted methyltransf 99.0 3.2E-08 7E-13 87.2 16.0 151 4-193 65-225 (275)
34 TIGR00096 probable S-adenosylm 98.8 2E-07 4.2E-12 82.8 15.2 138 4-179 60-202 (276)
35 COG3956 Protein containing tet 98.0 7.4E-05 1.6E-09 68.1 11.2 149 4-193 71-223 (488)
36 TIGR03365 Bsubt_queE 7-cyano-7 85.6 2 4.4E-05 37.1 5.7 42 16-57 73-114 (238)
37 TIGR02495 NrdG2 anaerobic ribo 85.3 2.6 5.5E-05 34.5 5.9 37 17-53 64-100 (191)
38 COG0602 NrdG Organic radical a 78.5 5.6 0.00012 34.0 5.7 49 6-54 58-110 (212)
39 PF13353 Fer4_12: 4Fe-4S singl 74.8 7 0.00015 29.9 4.9 50 4-53 39-94 (139)
40 PRK05301 pyrroloquinoline quin 67.2 13 0.00028 33.9 5.7 48 6-53 51-100 (378)
41 TIGR02109 PQQ_syn_pqqE coenzym 67.0 13 0.00029 33.5 5.6 47 7-53 43-91 (358)
42 PF13394 Fer4_14: 4Fe-4S singl 66.1 4.5 9.8E-05 30.3 2.1 37 17-53 49-90 (119)
43 PRK13762 tRNA-modifying enzyme 65.0 12 0.00025 34.0 4.8 44 11-54 125-169 (322)
44 PF04055 Radical_SAM: Radical 62.5 16 0.00034 27.7 4.6 40 3-42 31-72 (166)
45 TIGR02668 moaA_archaeal probab 61.8 19 0.00042 31.6 5.5 47 7-53 46-95 (302)
46 TIGR02493 PFLA pyruvate format 61.2 18 0.0004 30.4 5.1 36 17-52 67-103 (235)
47 smart00046 DAGKc Diacylglycero 57.5 53 0.0011 25.1 6.7 47 15-65 49-100 (124)
48 COG0420 SbcD DNA repair exonuc 56.2 20 0.00044 32.8 4.8 49 4-52 27-84 (390)
49 TIGR02666 moaA molybdenum cofa 54.6 36 0.00078 30.5 6.1 47 7-53 49-99 (334)
50 TIGR03822 AblA_like_2 lysine-2 54.4 22 0.00047 32.1 4.7 38 6-43 124-166 (321)
51 COG0159 TrpA Tryptophan syntha 53.2 22 0.00047 31.7 4.3 106 5-111 7-136 (265)
52 cd01335 Radical_SAM Radical SA 51.2 44 0.00095 25.9 5.5 37 16-52 45-83 (204)
53 PF01936 NYN: NYN domain; Int 50.7 34 0.00073 26.1 4.7 39 8-50 86-126 (146)
54 TIGR03470 HpnH hopanoid biosyn 49.6 43 0.00094 30.0 5.8 40 16-55 73-112 (318)
55 TIGR03820 lys_2_3_AblA lysine- 49.4 27 0.00058 33.1 4.5 40 6-45 143-188 (417)
56 TIGR02826 RNR_activ_nrdG3 anae 49.1 44 0.00095 26.8 5.2 47 4-51 50-96 (147)
57 PRK10076 pyruvate formate lyas 47.5 36 0.00078 29.0 4.7 33 17-49 40-73 (213)
58 KOG3517 Transcription factor P 46.1 12 0.00027 33.1 1.7 40 21-62 90-132 (334)
59 cd07399 MPP_YvnB Bacillus subt 45.7 63 0.0014 27.1 5.9 51 4-54 22-80 (214)
60 PRK11145 pflA pyruvate formate 44.9 32 0.0007 29.2 4.1 32 18-49 73-105 (246)
61 TIGR02494 PFLE_PFLC glycyl-rad 44.2 49 0.0011 29.0 5.2 35 17-51 127-162 (295)
62 PRK13361 molybdenum cofactor b 42.7 70 0.0015 28.7 6.1 47 7-53 51-101 (329)
63 PF10726 DUF2518: Protein of f 42.2 1.1E+02 0.0023 24.9 6.3 31 34-65 25-58 (145)
64 PRK13057 putative lipid kinase 42.0 52 0.0011 28.8 5.0 54 7-64 41-95 (287)
65 cd03816 GT1_ALG1_like This fam 42.0 34 0.00074 31.5 4.0 35 15-49 3-37 (415)
66 PRK09213 pur operon repressor; 40.9 1.6E+02 0.0035 26.2 7.9 42 24-65 110-156 (271)
67 COG1432 Uncharacterized conser 40.6 76 0.0016 26.2 5.5 44 8-55 101-146 (181)
68 TIGR03821 AblA_like_1 lysine-2 40.2 42 0.0009 30.4 4.2 36 6-41 130-170 (321)
69 PLN02335 anthranilate synthase 40.2 31 0.00068 29.4 3.2 38 10-51 12-50 (222)
70 smart00481 POLIIIAc DNA polyme 39.0 49 0.0011 22.2 3.5 44 6-53 17-62 (67)
71 TIGR03278 methan_mark_10 putat 38.3 63 0.0014 30.4 5.2 46 3-48 57-107 (404)
72 cd05560 Xcc1710_like Xcc1710_l 37.7 1.3E+02 0.0028 22.8 6.0 36 16-52 53-88 (109)
73 PRK00861 putative lipid kinase 36.1 1.2E+02 0.0026 26.6 6.4 56 6-65 46-103 (300)
74 PLN02951 Molybderin biosynthes 35.8 90 0.002 28.8 5.7 37 16-52 107-146 (373)
75 cd06167 LabA_like LabA_like pr 35.2 1E+02 0.0023 23.6 5.3 38 9-50 91-130 (149)
76 TIGR02491 NrdG anaerobic ribon 34.5 93 0.002 24.8 5.0 37 6-42 51-93 (154)
77 PRK11914 diacylglycerol kinase 33.7 1E+02 0.0022 27.1 5.6 56 6-65 53-110 (306)
78 COG1184 GCD2 Translation initi 33.2 1E+02 0.0022 28.0 5.4 53 7-62 133-189 (301)
79 cd04724 Tryptophan_synthase_al 32.9 50 0.0011 28.5 3.4 41 17-58 2-51 (242)
80 PRK05637 anthranilate synthase 32.8 42 0.00091 28.4 2.8 33 16-52 2-34 (208)
81 TIGR00238 KamA family protein. 32.7 74 0.0016 28.8 4.6 36 6-41 147-187 (331)
82 PRK12361 hypothetical protein; 31.7 1.3E+02 0.0028 29.1 6.3 55 6-64 286-343 (547)
83 TIGR01917 gly_red_sel_B glycin 31.0 1.3E+02 0.0027 28.8 5.9 54 4-57 323-378 (431)
84 COG0731 Fe-S oxidoreductases [ 30.9 99 0.0021 28.0 5.0 48 15-62 79-128 (296)
85 PF02844 GARS_N: Phosphoribosy 30.8 41 0.0009 25.5 2.2 39 18-57 27-75 (100)
86 COG1597 LCB5 Sphingosine kinas 30.7 1.7E+02 0.0036 26.2 6.4 57 6-66 47-106 (301)
87 cd00248 Mth938-like Mth938-lik 28.3 2.3E+02 0.005 21.3 6.0 36 16-52 53-88 (109)
88 PRK00164 moaA molybdenum cofac 27.8 1.7E+02 0.0037 26.0 6.1 36 16-51 66-103 (331)
89 PF04430 DUF498: Protein of un 27.5 1.2E+02 0.0026 22.8 4.3 36 16-52 54-89 (110)
90 TIGR00288 conserved hypothetic 27.4 95 0.0021 25.5 3.9 31 16-50 106-136 (160)
91 TIGR01918 various_sel_PB selen 26.9 1.5E+02 0.0033 28.2 5.7 54 4-57 323-378 (431)
92 COG1832 Predicted CoA-binding 26.8 1.1E+02 0.0025 24.6 4.2 40 7-50 7-48 (140)
93 PF03575 Peptidase_S51: Peptid 26.6 52 0.0011 26.0 2.3 49 7-58 27-81 (154)
94 cd00840 MPP_Mre11_N Mre11 nucl 26.4 1.7E+02 0.0037 23.7 5.4 50 5-54 29-87 (223)
95 PF00292 PAX: 'Paired box' dom 26.0 33 0.00072 27.1 1.0 32 23-56 89-121 (125)
96 PF02441 Flavoprotein: Flavopr 26.0 1.1E+02 0.0024 23.3 4.0 42 16-58 1-42 (129)
97 cd07388 MPP_Tt1561 Thermus the 25.8 2E+02 0.0043 24.7 5.9 51 5-55 19-74 (224)
98 cd01450 vWFA_subfamily_ECM Von 25.8 1.1E+02 0.0024 23.0 4.0 38 16-54 105-142 (161)
99 PRK06372 translation initiatio 25.0 2.4E+02 0.0051 24.9 6.2 34 17-52 110-143 (253)
100 PRK13059 putative lipid kinase 25.0 2.9E+02 0.0062 24.3 6.9 51 10-64 50-103 (295)
101 PF02780 Transketolase_C: Tran 24.8 1E+02 0.0023 23.2 3.6 32 16-49 10-41 (124)
102 PRK09453 phosphodiesterase; Pr 24.8 2.2E+02 0.0048 22.9 5.7 49 6-54 16-74 (182)
103 cd05125 Mth938_2P1-like Mth938 24.4 2.7E+02 0.0059 21.3 5.8 49 16-68 55-103 (114)
104 PF14698 ASL_C2: Argininosucci 23.9 36 0.00078 23.8 0.7 38 29-66 1-40 (70)
105 cd07198 Patatin Patatin-like p 23.3 90 0.002 25.0 3.1 33 32-64 13-48 (172)
106 COG2390 DeoR Transcriptional r 23.0 1.9E+02 0.0041 26.4 5.4 46 5-52 42-89 (321)
107 PRK15454 ethanol dehydrogenase 23.0 1.6E+02 0.0034 27.4 5.0 48 5-53 36-87 (395)
108 cd07231 Pat_SDP1-like Sugar-De 22.6 1.3E+02 0.0028 27.6 4.2 43 16-58 67-109 (323)
109 PRK15418 transcriptional regul 22.3 1.6E+02 0.0035 26.5 4.8 44 6-51 46-91 (318)
110 PRK13337 putative lipid kinase 21.6 3.7E+02 0.008 23.6 6.9 55 6-64 46-104 (304)
111 cd01518 RHOD_YceA Member of th 21.5 2.7E+02 0.0059 19.7 5.1 17 151-167 59-75 (101)
112 cd07206 Pat_TGL3-4-5_SDP1 Tria 21.4 1.4E+02 0.0031 27.0 4.2 50 9-58 59-110 (298)
113 PF11823 DUF3343: Protein of u 21.1 94 0.002 21.5 2.4 24 39-64 21-44 (73)
114 PRK13054 lipid kinase; Reviewe 21.0 3.7E+02 0.0079 23.6 6.8 55 6-64 45-105 (300)
115 PF00781 DAGK_cat: Diacylglyce 20.8 1.6E+02 0.0035 22.2 4.0 45 17-65 56-104 (130)
116 COG3365 Uncharacterized protei 20.8 1.6E+02 0.0034 22.9 3.7 24 4-27 21-45 (118)
117 TIGR02069 cyanophycinase cyano 20.7 1.3E+02 0.0027 26.3 3.7 48 8-58 75-128 (250)
118 COG1654 BirA Biotin operon rep 20.6 94 0.002 22.5 2.4 21 31-51 35-55 (79)
119 PRK00230 orotidine 5'-phosphat 20.5 96 0.0021 26.5 2.8 39 16-54 26-70 (230)
120 cd07227 Pat_Fungal_NTE1 Fungal 20.4 1.3E+02 0.0027 26.7 3.6 53 11-63 4-59 (269)
121 PRK05670 anthranilate synthase 20.2 1.2E+02 0.0025 24.8 3.2 31 18-52 2-32 (189)
No 1
>PTZ00175 diphthine synthase; Provisional
Probab=100.00 E-value=8e-53 Score=370.42 Aligned_cols=206 Identities=68% Similarity=1.076 Sum_probs=198.3
Q ss_pred hhhhHHHHHHHhcCCCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHHHHhCCCcccCCceEEEeeecccc
Q 027789 2 VEEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETW 81 (219)
Q Consensus 2 ~e~~~~~I~~~a~~~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aaa~~gl~l~~~g~~~si~~~~~~~ 81 (219)
+|+..++|++.+++++||||+.|||++||||.+++.+++++||++++|||+|+++|+|.+|+++|+||++++|+|+++||
T Consensus 63 ~e~~~~~ii~~a~~~~Vv~L~~GDP~i~~t~~~l~~~~~~~gi~vevIPGvSi~sA~~~~Gl~~~~fg~~~sv~~~t~~~ 142 (270)
T PTZ00175 63 VEEGCDEILEEAKEKNVAFLVVGDPFCATTHTDLYLRAKKKGIEVEVIHNASIMNAIGCTGLQLYRFGETVSIPFFTETW 142 (270)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCccCCHHHHHHHHHHCCCcEEEECCcCHHHHHhhcCCCcCCCCceEEEEEEeCCC
Confidence 45666789999888899999999999999999999999999999999999999999888999999999999999999999
Q ss_pred cCCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q 027789 82 RPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFAR 161 (219)
Q Consensus 82 ~p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~r 161 (219)
.|.++++.+++|+.+|+|||||||++.++.++++++|+...|++++||++++++++|.++++++.++++++++++++++|
T Consensus 143 ~~~s~~~~i~~n~~~glhTl~lldi~~~~~~~~~~~~~~~~~~~~~~M~~~~a~~~l~~i~~~~~~~~~~~~t~~v~v~r 222 (270)
T PTZ00175 143 KPDSFYDKIKANRDNGLHTLCLLDIKVKERSVENLMKGRKIYEPPRYMTINQAIEQLLEVEEKKGGGVIAEDTLVVGVAR 222 (270)
T ss_pred CCCChhHHHHHHHHcCCceEEEEeeeccccchhhhhccccccCCCcCCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred cCCCCeEEEEEehhhhhhcccCCCceEEEEEcc-CChhHHHHHHHhc
Q 027789 162 LGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGE-THPVEEEMLDFYR 207 (219)
Q Consensus 162 ~g~~de~I~~~~l~~l~~~~~~~p~~slIivg~-l~~~e~e~l~~~~ 207 (219)
+||+||+|+.++|++|++.+++.|+|||||+|+ ||++|.|||+.|+
T Consensus 223 ~g~~~q~i~~gtL~~l~~~d~g~PlhsLIv~g~~Lh~~E~e~l~~~~ 269 (270)
T PTZ00175 223 VGSDDQQIVSGTLEDLLDVDFGPPLHSLVICAPTLHDIEEEFFELYR 269 (270)
T ss_pred CCCCCceEEEEEHHHHhhcccCCCCEEEEEECCcCCHHHHHHHHHhh
Confidence 999999999999999999999999999999998 9999999999986
No 2
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-53 Score=352.78 Aligned_cols=210 Identities=69% Similarity=1.117 Sum_probs=205.7
Q ss_pred ChhhhHHHHHHHhcCCCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHHHHhCCCcccCCceEEEeeeccc
Q 027789 1 MVEEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTET 80 (219)
Q Consensus 1 ~~e~~~~~I~~~a~~~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aaa~~gl~l~~~g~~~si~~~~~~ 80 (219)
+||+++++|++.|.+.+|+||+.||||-++||++++.++++.||+|++||+.|.++|++++|+++|.||++++++|++..
T Consensus 61 mvEq~sd~il~~ad~~dVa~LVVGdPfgATTHsDlvlRAk~~~ipv~vIHNASimNavG~CGLqlY~fGetVSiv~ftd~ 140 (272)
T KOG3123|consen 61 MVEQESDKILDEADKEDVAFLVVGDPFGATTHSDLVLRAKELGIPVEVIHNASIMNAVGCCGLQLYNFGETVSIVFFTDN 140 (272)
T ss_pred HHHhhHHHHhhhhhhcceEEEEecCcccccchhhhheehhhcCCCeEEEechHHHhhhccceeeeeccCcEEEEEEEccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 027789 81 WRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFA 160 (219)
Q Consensus 81 ~~p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~ 160 (219)
|+|.|+|+.|++|...|+||||||||+.++.+|++|+||.+.|+||+||++++++++|+++.++.+...+.+|++++.++
T Consensus 141 wrP~SfydkI~~Nr~~glHTLcLLDIkvkEqs~enl~rgrkiyeppRymsvn~a~~QlLei~e~~~~~~~~edT~~v~~~ 220 (272)
T KOG3123|consen 141 WRPESFYDKIKENRQLGLHTLCLLDIKVKEQSVENLARGRKIYEPPRYMSVNEAAEQLLEIEEKRGEPAYTEDTLCVAVA 220 (272)
T ss_pred cCchhHHHHHHHhhhcCceeEEEEEEeeccHHHHHHhccccccCCchhhhHHHHHHHHHHHHHhhCCCCcCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred ecCCCCeEEEEEehhhhhhcccCCCceEEEEEccCChhHHHHHHHhccCC
Q 027789 161 RLGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGETHPVEEEMLDFYRLTD 210 (219)
Q Consensus 161 r~g~~de~I~~~~l~~l~~~~~~~p~~slIivg~l~~~e~e~l~~~~~~~ 210 (219)
|+||+||+|+.+++.+|+..++|.|.||+||+|++|+.|.|+|+.|+.+.
T Consensus 221 R~Gs~~q~i~~gt~~~l~~~d~G~PLHslii~ge~h~lE~e~l~~~~~~~ 270 (272)
T KOG3123|consen 221 RVGSDDQKIVAGTIKDLAEVDFGEPLHSLIIPGETHPLELEMLESFAKNL 270 (272)
T ss_pred ecCCCcceeeheeHHhHhhcccCCCceeEEeecCcChHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999998764
No 3
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-49 Score=335.91 Aligned_cols=194 Identities=49% Similarity=0.732 Sum_probs=186.8
Q ss_pred ChhhhHHHHHHHhcCCCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeecc
Q 027789 1 MVEEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTE 79 (219)
Q Consensus 1 ~~e~~~~~I~~~a~~~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~ 79 (219)
++|+..+.|++.|++++|++|+.||||++|||.+++.+++++||+|+||||+|++||+ +++|+++|+||+++|++|++.
T Consensus 61 dlE~~~~~il~~a~~~~Vall~~GDpmvATTH~~L~~~A~~~Gi~v~vIh~~Si~~Aa~g~tGL~~YkFG~~vTip~~~~ 140 (260)
T COG1798 61 DLEENSRSILDRAKDKDVALLVAGDPMVATTHVDLRIEAKRRGIEVRVIHGASIINAAIGLTGLQNYKFGKTVTLPFPSE 140 (260)
T ss_pred HHhhcchhHHHHHhcCCEEEEecCCcceehhHHHHHHHHHHcCCcEEEEcccHHHHHHhhhhhhheeccCCceEeccccc
Confidence 4787778899999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred cccCCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q 027789 80 TWRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGF 159 (219)
Q Consensus 80 ~~~p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv 159 (219)
+|+|.++++.|++|+.+|+||++|||++.++ +||++++++++|++++++.+++.+++|++++++
T Consensus 141 ~~~p~s~yd~Ik~N~~~GLHTl~lLDi~~~~----------------r~Mt~~ea~~~LLe~e~~~~~~~~~~d~~~vvv 204 (260)
T COG1798 141 NFFPTSPYDVIKENLERGLHTLVLLDIKEDE----------------RYMTANEALELLLEAEERRGRGVLTEDTLAVVV 204 (260)
T ss_pred CcCCCcHHHHHHHhhhcCccceEEEEecccc----------------cccCHHHHHHHHHHHHHHhcCCCcCCCceEEEE
Confidence 9999999999999999999999999999653 599999999999999999988899999999999
Q ss_pred EecCCCCeEEEEEehhhhhhcccCCCceEEEEEccCChhHHHHHHHhccCC
Q 027789 160 ARLGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGETHPVEEEMLDFYRLTD 210 (219)
Q Consensus 160 ~r~g~~de~I~~~~l~~l~~~~~~~p~~slIivg~l~~~e~e~l~~~~~~~ 210 (219)
+|+|+++|.|..+++++|++.+++.|+|++||||+||++|+|||+.|+.+.
T Consensus 205 aR~Gs~~~~v~ag~l~~l~~~Dfg~Plh~lvvp~~Lh~~E~e~L~~~a~~~ 255 (260)
T COG1798 205 ARAGSGDEVVRAGTLEELADEDFGEPLHSLVVPGRLHFVEAEYLRELAGAP 255 (260)
T ss_pred EecCCCCceEEechHHHHhhcccCCCceEEEEeccccHHHHHHHHHHhcCh
Confidence 999999999999999999999999999999999999999999999999875
No 4
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=100.00 E-value=1.6e-42 Score=303.12 Aligned_cols=190 Identities=45% Similarity=0.713 Sum_probs=177.5
Q ss_pred hhhHHHHHHHhcCCCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeecccc
Q 027789 3 EEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW 81 (219)
Q Consensus 3 e~~~~~I~~~a~~~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~ 81 (219)
|+..+.+++.+++++||||++|||++|||+.+++.++++.||++||||||||++|| |.+|+|+|+||.+++++++++|+
T Consensus 63 e~~~~~ii~~~~~~~Vv~l~~GDP~i~~~~~~l~~~l~~~~i~vevIPGiSs~~aaaa~~g~~lt~~g~~~~v~~~s~~~ 142 (257)
T TIGR00522 63 EENSFRLIERAKSKDVALLVAGDPMVATTHTDLKLEAKRKGIETRIIHGASISSAVCGLTGLQLYKFGKTATIVFFTDNY 142 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcCcccCCHHHHHHHHHHCCCeEEEECcHhHHHHHHHHcCCCcccCCCcEEEEEecCCc
Confidence 45567788888779999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred cCCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q 027789 82 RPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFAR 161 (219)
Q Consensus 82 ~p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~r 161 (219)
+|.++++.+++|+.++.||+||||++.++ .+||++.++.+.|.++.+++.++++++|+|+++++|
T Consensus 143 ~~~~~~~~~~~~l~~~~~Tlvll~~~~~~---------------~~~M~~~~~~~~l~~~~~~l~~~g~~~~tpv~vv~~ 207 (257)
T TIGR00522 143 RPQTPYNVIKENRKIGLHTLVLLDIHPKE---------------NRAMTIGEGLENLLEEEEKRKTGAITPDTYAVVIAR 207 (257)
T ss_pred CCCCHHHHHHHHHhcCCCcEEEEecccCc---------------ccccCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEEE
Confidence 88887788999999999999999998543 469999999999999998888889999999999999
Q ss_pred cCCCCeEEEEEehhhhhhcccCCCceEEEEEcc-CChhHHHHHHHhc
Q 027789 162 LGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGE-THPVEEEMLDFYR 207 (219)
Q Consensus 162 ~g~~de~I~~~~l~~l~~~~~~~p~~slIivg~-l~~~e~e~l~~~~ 207 (219)
+|||||+++.+++++|++.+++.|.+++||+|+ ||++|.|||++|+
T Consensus 208 ~~~~de~i~~gtl~~l~~~~~~~~~~alii~g~~l~~~e~~~~~~~~ 254 (257)
T TIGR00522 208 AGSGKPVVKCDKIENLKNYDFGEPLHCLVVLAKTLHFMEFEYLREFA 254 (257)
T ss_pred CCCCCceEEEEEHHHHHhcccCCCCeEEEEeCCCCCHHHHHHHHHhc
Confidence 999999999999999999888889999999997 9999999999998
No 5
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=100.00 E-value=2.4e-34 Score=244.91 Aligned_cols=178 Identities=22% Similarity=0.231 Sum_probs=149.2
Q ss_pred hhhhHHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeecc
Q 027789 2 VEEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTE 79 (219)
Q Consensus 2 ~e~~~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~ 79 (219)
+|+..+.|++..++ |+||||++|||+|||...|++++|.++||++|+|||||||+|| |.+|+++|..+.+++|++++.
T Consensus 61 LeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~ 140 (254)
T COG2875 61 LEEIIDLMVDAVREGKDVVRLHSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRP 140 (254)
T ss_pred HHHHHHHHHHHHHcCCeEEEeecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEcc
Confidence 67788888888887 9999999999999999999999999999999999999999998 999999999988777776654
Q ss_pred c-ccCCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 027789 80 T-WRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVG 158 (219)
Q Consensus 80 ~-~~p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvv 158 (219)
. ..|.+..|.+...... ..|+|+ |+++.. +.++.+++..|++++||||++
T Consensus 141 sgrt~vpe~e~l~~la~~-~aTm~I------------------------~L~v~~----I~~vv~~L~~g~y~~dtPVaV 191 (254)
T COG2875 141 SGRTPVPEKESLAALAKH-GATMVI------------------------FLGVHA----IDKVVEELLEGGYPPDTPVAV 191 (254)
T ss_pred ccCCCCCchhHHHHHHhc-CceeEe------------------------eehhhH----HHHHHHHHhcCCCCCCCCEEE
Confidence 2 2566677888774444 688887 888876 444666677789999999999
Q ss_pred EEecCCCCeEEEEEehhhhhhc--ccCCCceEEEEEcc-CChhHHHHHHHhcc
Q 027789 159 FARLGSEDQMIVAGTMRLLQMV--DFGAPLHCLVIVGE-THPVEEEMLDFYRL 208 (219)
Q Consensus 159 v~r~g~~de~I~~~~l~~l~~~--~~~~p~~slIivg~-l~~~e~e~l~~~~~ 208 (219)
|+|+|||||+++++||++++++ +.+....++||+|. +.+.+.+-.++|..
T Consensus 192 V~rAsWpDe~ii~GTL~dIa~kv~~~~i~rTAlIiVG~~l~~~~~~~S~LY~~ 244 (254)
T COG2875 192 VYRASWPDEKIIRGTLEDIAEKVKEAGIRRTALIIVGDVLDPEGFRRSKLYDP 244 (254)
T ss_pred EEecCCCcccEEEeeHHHHHHHHHhcCceeEEEEEEccccCcCccccccccCc
Confidence 9999999999999999999883 55667779999995 67777565555554
No 6
>PRK04160 diphthine synthase; Provisional
Probab=100.00 E-value=4.2e-33 Score=243.28 Aligned_cols=192 Identities=48% Similarity=0.713 Sum_probs=168.1
Q ss_pred hhhHHHHH-HHhcCCCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeeccc
Q 027789 3 EEKADKIL-SESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTET 80 (219)
Q Consensus 3 e~~~~~I~-~~a~~~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~ 80 (219)
++..+.++ +.+++++||+|+.|||++||++.+++.++++.|+++|+||||||++++ |++|++++.+|.+.++++.+.+
T Consensus 63 ~~~~~~~~~~~~~~~~Vv~L~sGDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~~~~~g~~~s~~~~~~~ 142 (258)
T PRK04160 63 EQESEKIILEEAKEKNVAFLTAGDPMVATTHVDLRLEAKKRGIEVRVIHGVSIYSAAISLTGLQNYKFGKSVTVPFPYGN 142 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCccccCHHHHHHHHHHCCCcEEEECChhHHHHHHHHhCCCcccCCceEEEccCcCC
Confidence 34444455 555568999999999999999999999999999999999999999998 9999999999999999987777
Q ss_pred ccCCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 027789 81 WRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFA 160 (219)
Q Consensus 81 ~~p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~ 160 (219)
+.+..+.+.+++++..+.+|++||+.+.+ ..+|.+..+.+.|.+..+++..+++++++++++++
T Consensus 143 ~~~~~~~~~i~~~~~~~~~~~vll~~~~~----------------~~~~~~~~~~~~L~~~~~~l~~g~~~~~~~v~V~e 206 (258)
T PRK04160 143 FFPESPYDVIKDNLERGLHTLVLLDIKAD----------------GRYMTANEALELLLELEEKRGEGVISEDTLAVVVA 206 (258)
T ss_pred cCCCCHHHHHHHHHhcCCCcEEEEEeccC----------------CcccCHHHHHHHHHHHHHHhcccccCCCCEEEEEE
Confidence 66655567788888888899999876643 23899999999888888888777787899999999
Q ss_pred ecCCCCeEEEEEehhhhhhcccCCCceEEEEEccCChhHHHHHHHhccCC
Q 027789 161 RLGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGETHPVEEEMLDFYRLTD 210 (219)
Q Consensus 161 r~g~~de~I~~~~l~~l~~~~~~~p~~slIivg~l~~~e~e~l~~~~~~~ 210 (219)
|+|+++|+|..++++++.+.+++.+++++||+|+||++|.|+++.|+++.
T Consensus 207 ~l~~~~E~i~~~tl~~l~~~~f~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 256 (258)
T PRK04160 207 RAGSPDPVVRAGRLEELADYDFGGPLHILIIPGKLHFMEAEALKELAGAP 256 (258)
T ss_pred ecCCCCceEEEccHHHHhhCCCCCCCEEEEEeCCCCHHHHHHHHHHhcCC
Confidence 99999999999999999888898888999999999999999999998764
No 7
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=99.98 E-value=9.5e-32 Score=232.21 Aligned_cols=164 Identities=21% Similarity=0.206 Sum_probs=139.1
Q ss_pred hhhHHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeeccc
Q 027789 3 EEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTET 80 (219)
Q Consensus 3 e~~~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~ 80 (219)
|+..+.+++.|++ +.|+|||.|||+||||..|+++.|.++||+|||||||||.+|+ +++|+|+|+++.+.+++|+|+|
T Consensus 68 ~eIn~~lv~~a~~G~~VVRLKgGDP~iFGRggEE~~~l~~~gI~~eVVPGiTSa~a~~a~agIPlT~R~~a~s~~~vTgh 147 (244)
T COG0007 68 DEINALLVELAREGKRVVRLKGGDPYIFGRGGEEIEALAEAGIEFEVVPGITSAIAAPAYAGIPLTHRGVASSFTFVTGH 147 (244)
T ss_pred HHHHHHHHHHHhcCCeEEEecCCCCCeecCcHHHHHHHHHcCCceEEeCccchHHHHHHHcCCceeecCccceEEEEeCc
Confidence 3555668888987 9999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred ccCCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 027789 81 WRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFA 160 (219)
Q Consensus 81 ~~p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~ 160 (219)
..+.. .-|..+.....|+|+ ||+.+++. ++.+++.++|+++++|+++++
T Consensus 148 ~~~~~---~~w~~la~~~~TlVi------------------------~Mg~~~l~----~i~~~Li~~G~~~~tpvAvi~ 196 (244)
T COG0007 148 DRDGK---LDWEALARSVGTLVI------------------------LMGASRLA----EIARELIAHGRSPDTPVAVIE 196 (244)
T ss_pred CCCCC---cChHHhcccCCCEEE------------------------EeCcchHH----HHHHHHHHcCCCCCCCEEEEE
Confidence 76543 124446666789997 99998744 466667778899999999999
Q ss_pred ecCCCCeEEEEEehhhhhhc--ccCCCceEEEEEccCCh
Q 027789 161 RLGSEDQMIVAGTMRLLQMV--DFGAPLHCLVIVGETHP 197 (219)
Q Consensus 161 r~g~~de~I~~~~l~~l~~~--~~~~p~~slIivg~l~~ 197 (219)
+.++++|+++.++|+++.+. ..+...+++|++|++..
T Consensus 197 ~gt~~~Qr~~~gtL~~l~~~~~~~~~~~PaiiviG~vv~ 235 (244)
T COG0007 197 NGTTPDQRVVVGTLGDLAELAEEAGLTPPALIVIGEVVN 235 (244)
T ss_pred cCCCcceEEEEeEHHHHHHHHHhcCCCCCEEEEEcceee
Confidence 99999999999999999883 32333349999997543
No 8
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=99.95 E-value=4.9e-27 Score=202.92 Aligned_cols=160 Identities=22% Similarity=0.232 Sum_probs=128.2
Q ss_pred hHHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeeccccc
Q 027789 5 KADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWR 82 (219)
Q Consensus 5 ~~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~~ 82 (219)
..+.+.+.+++ ++||+|+.|||++||++.++++++.+.|+++++||||||++|| |++|+|++.++++.++.+.+.|.+
T Consensus 69 ~~~~i~~~~~~g~~V~~l~~GDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~l~~~~~~~~~~~~~~~~~ 148 (249)
T PRK06136 69 INRLLVDYARKGKVVVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEA 148 (249)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCchhhhcHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCcccCCcceeEEEEecccC
Confidence 44556677665 8999999999999999999999999999999999999999998 999999999999888888887765
Q ss_pred CCChh-HHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q 027789 83 PGSFY-EKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFAR 161 (219)
Q Consensus 83 p~~~~-e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~r 161 (219)
+.... +...+++..+.+|+|| ||+..+..+ +.+.+. +.++++++++++++|
T Consensus 149 ~~~~~~~~~~~~l~~~~~~~vl------------------------~~~~~~~~~-i~~~L~---~~g~~~~~~~~v~~~ 200 (249)
T PRK06136 149 AGKLEPEVNWSALADGADTLVI------------------------YMGVRNLPY-IAAQLL---AAGRAPDTPVAIIEN 200 (249)
T ss_pred CCccccccCHHHHhCCCCeEEE------------------------ECCHHHHHH-HHHHHH---HcCCCCCCeEEEEEe
Confidence 54322 1122445566789987 677665433 333333 346777899999999
Q ss_pred cCCCCeEEEEEehhhhhhc----ccCCCceEEEEEcc
Q 027789 162 LGSEDQMIVAGTMRLLQMV----DFGAPLHCLVIVGE 194 (219)
Q Consensus 162 ~g~~de~I~~~~l~~l~~~----~~~~p~~slIivg~ 194 (219)
+|+|+|+++.++++++.+. +++.+ ++|++|+
T Consensus 201 lg~~~E~i~~~~l~el~~~~~~~~~~~~--~vviig~ 235 (249)
T PRK06136 201 GTTPEQRVVRGTLGTIAEGAAAEDIQSP--AIIVIGE 235 (249)
T ss_pred CCCCCcEEEEEEHHHHHHHHHhcCCCCC--EEEEEch
Confidence 9999999999999999875 66666 9999996
No 9
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=99.95 E-value=1.6e-26 Score=197.21 Aligned_cols=162 Identities=23% Similarity=0.227 Sum_probs=125.5
Q ss_pred hhHHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeecccc
Q 027789 4 EKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW 81 (219)
Q Consensus 4 ~~~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~ 81 (219)
+..+.|.+++++ ++||+|+.|||++||++.++++++.+.|+++++||||||++|+ |++|+|++.++++.++.+++.|.
T Consensus 59 ~~~~~i~~~~~~g~~V~~L~~GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a~~g~~l~~~~~~~~~~~~~~~g 138 (229)
T TIGR01465 59 EIVDIMSDAHREGKLVVRLHTGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILTRAEG 138 (229)
T ss_pred HHHHHHHHHHHCCCeEEEEeCcCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHHHcCCCccccCCccEEEEEeccC
Confidence 445556677765 8999999999999999999999999999999999999999998 99999999999888888777665
Q ss_pred c-CCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 027789 82 R-PGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFA 160 (219)
Q Consensus 82 ~-p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~ 160 (219)
+ |....+.+.. +.....|+++ ||..+. ...+.+. +.+.++++++++++++
T Consensus 139 ~~~~~~~~~l~~-~~~~~~~~vi------------------------~~~~~~-~~~i~~~---L~~~g~~~~~~v~v~~ 189 (229)
T TIGR01465 139 RTPMPEGEKLAD-LAKHGATMAI------------------------FLSAHI-LDKVVKE---LIEGGYSEDTPVAVVY 189 (229)
T ss_pred CCCCCChHHHHH-HhcCCCeEEE------------------------ECcHHH-HHHHHHH---HHHcCcCCCCcEEEEE
Confidence 4 2222344444 4444578776 566543 2334333 3335677789999999
Q ss_pred ecCCCCeEEEEEehhhhhhc--ccCCCceEEEEEcc
Q 027789 161 RLGSEDQMIVAGTMRLLQMV--DFGAPLHCLVIVGE 194 (219)
Q Consensus 161 r~g~~de~I~~~~l~~l~~~--~~~~p~~slIivg~ 194 (219)
|+|+++|+|+.++++++.+. +.+.+.+++||+|.
T Consensus 190 ~l~~~~E~i~~~~l~~l~~~~~~~~~~~~~~ivvg~ 225 (229)
T TIGR01465 190 RATWPDEKIVRGTLADLADLVREEGIYRTTLILVGP 225 (229)
T ss_pred eCCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEECc
Confidence 99999999999999999773 33334559999995
No 10
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=99.95 E-value=1e-26 Score=218.77 Aligned_cols=158 Identities=18% Similarity=0.132 Sum_probs=127.7
Q ss_pred HHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeecccccCC
Q 027789 7 DKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPG 84 (219)
Q Consensus 7 ~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~~p~ 84 (219)
+.|++++++ ++||||+.|||++||++.++++++.+.|+++||||||||++|| |++|+|++.++.+.++.+.++|..+.
T Consensus 71 ~~l~~~a~~Gk~VvrL~~GDP~vfg~~~ee~~~l~~~gi~~eVVPGISS~~aaaA~aGiPlt~r~~~~s~~viT~h~~~~ 150 (474)
T PRK07168 71 AHLLQFAKEGKIVVRLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLLTGHAKGP 150 (474)
T ss_pred HHHHHHHhCCCEEEEEeCCCchHHhhHHHHHHHHHhCCCCEEEECChhHHHHHHHHcCCCCCCccccceEEEEccCcCCc
Confidence 456788776 8999999999999999999999999999999999999999998 99999999999999999999986532
Q ss_pred ChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEecCC
Q 027789 85 SFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGS 164 (219)
Q Consensus 85 ~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~r~g~ 164 (219)
..-...+..+. ..+|+|+ ||+..+.. ++.+.+.+.|+++++|+++++|+|+
T Consensus 151 ~~~~~~~~~l~-~~~tlV~------------------------lm~~~~l~----~I~~~L~~~G~~~~tpvavv~~~t~ 201 (474)
T PRK07168 151 LTDHGKYNSSH-NSDTIAY------------------------YMGIKNLP----TICENLRQAGKKEDTPVAVIEWGTT 201 (474)
T ss_pred cccchhHHHhc-CCCeEEE------------------------EcChhhHH----HHHHHHHHcCcCCCCeEEEEEECCC
Confidence 11111233344 3579997 78877643 2334445567889999999999999
Q ss_pred CCeEEEEEehhhhhh----cccCCCceEEEEEccC
Q 027789 165 EDQMIVAGTMRLLQM----VDFGAPLHCLVIVGET 195 (219)
Q Consensus 165 ~de~I~~~~l~~l~~----~~~~~p~~slIivg~l 195 (219)
++|+++.++|++|.+ .++..| ++|++|++
T Consensus 202 ~~Qri~~~tL~~l~~~~~~~~~~~p--avivvG~v 234 (474)
T PRK07168 202 GKQRVVTGTLSTIVSIVKNENISNP--SMTIVGDV 234 (474)
T ss_pred CCcEEEEEEHHHHHHHHHhcCCCCC--EEEEEChH
Confidence 999999999999965 244444 99999964
No 11
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=99.94 E-value=5.4e-26 Score=194.64 Aligned_cols=160 Identities=23% Similarity=0.232 Sum_probs=124.8
Q ss_pred hHHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeeccccc
Q 027789 5 KADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWR 82 (219)
Q Consensus 5 ~~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~~ 82 (219)
..+.|.+.+++ ++||+|+.|||++||++.+++.++.+.|+++++||||||+++| |++|+|++.++.+..+.+.+.|..
T Consensus 66 ~~~~i~~~~~~g~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~~~i~~~~~~ 145 (236)
T TIGR01469 66 INRLLVELAREGKKVVRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHEA 145 (236)
T ss_pred HHHHHHHHHHCCCeEEEEeCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCCcceEEEEEcccC
Confidence 33446666665 8999999999999999999999999999999999999999998 999999999987666777777755
Q ss_pred CCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEec
Q 027789 83 PGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARL 162 (219)
Q Consensus 83 p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~r~ 162 (219)
+.+..+...+++..+.+|+|+ ||+..+..+ +.+. +.+.++++++++++++|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~vl------------------------~~~~~~~~~-i~~~---L~~~g~~~~~~~~v~~~l 197 (236)
T TIGR01469 146 DDKALEVDWEALAKGAGTLVI------------------------YMGVRNLPE-IAKE---LIEHGRSPDTPVAVVEWA 197 (236)
T ss_pred CCcccccCHHHHhcCCCeEEE------------------------ECCHHHHHH-HHHH---HHHcCCCCCCcEEEEEEC
Confidence 543221112345566789987 666665433 3332 333467778999999999
Q ss_pred CCCCeEEEEEehhhhhh----cccCCCceEEEEEcc
Q 027789 163 GSEDQMIVAGTMRLLQM----VDFGAPLHCLVIVGE 194 (219)
Q Consensus 163 g~~de~I~~~~l~~l~~----~~~~~p~~slIivg~ 194 (219)
||++|+++.++++++.+ .+++.| ++|++|+
T Consensus 198 g~~~E~i~~~~l~el~~~~~~~~~~~~--~vvivg~ 231 (236)
T TIGR01469 198 TTPNQRVLIGTLGDLAEKAAEANLKSP--ALIVIGE 231 (236)
T ss_pred CCCCcEEEEEEHHHHHHHHHhcCCCCC--EEEEEcc
Confidence 99999999999999976 456556 9999996
No 12
>PRK10637 cysG siroheme synthase; Provisional
Probab=99.94 E-value=2e-25 Score=209.33 Aligned_cols=170 Identities=22% Similarity=0.242 Sum_probs=132.8
Q ss_pred hhHHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeecccc
Q 027789 4 EKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW 81 (219)
Q Consensus 4 ~~~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~ 81 (219)
+..+.|.+.+++ ++||+|++|||++||++.++++++.+.|+++++||||||++|| |++|+|++.++.+.++.++++|.
T Consensus 281 ~~~~~i~~~~~~G~~Vv~L~sGDP~~yg~~~~l~~~l~~~gi~vevVPGISS~~aAaA~~g~pl~~~~~~~~~~vis~h~ 360 (457)
T PRK10637 281 EINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHL 360 (457)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHhCCCCEEEECCHhHHHHHHHHcCCCcccCCceeeEEEEeCcc
Confidence 344567777776 8999999999999999999999999999999999999999998 99999999999877877788886
Q ss_pred cCCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q 027789 82 RPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFAR 161 (219)
Q Consensus 82 ~p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~r 161 (219)
.+....+ + .++..+.+|+|| ||+.+...+ +.+. +.+.++++++++++++|
T Consensus 361 ~~~~~~~-~-~~l~~~~~t~Vl------------------------~~~~~~~~~-i~~~---L~~~g~~~~~~v~v~e~ 410 (457)
T PRK10637 361 KTGGELD-W-ENLAAEKQTLVF------------------------YMGLNQAAT-IQQK---LIEHGMPADMPVALVEN 410 (457)
T ss_pred CCCCccC-H-HHHhCCCCeEEE------------------------ECCHhhHHH-HHHH---HHhcCCCCCCcEEEEEe
Confidence 5443222 2 335566799997 777766544 3332 32346777899999999
Q ss_pred cCCCCeEEEEEehhhhhh--cccCCCceEEEEEccCChhHHHHHHHh
Q 027789 162 LGSEDQMIVAGTMRLLQM--VDFGAPLHCLVIVGETHPVEEEMLDFY 206 (219)
Q Consensus 162 ~g~~de~I~~~~l~~l~~--~~~~~p~~slIivg~l~~~e~e~l~~~ 206 (219)
+|+|+|+++.++++++.+ .++.. +++|++|.... .+..+.+|
T Consensus 411 l~~~~E~i~~~tl~el~~~~~~~~~--~~viiig~~~~-~~~~~~~~ 454 (457)
T PRK10637 411 GTSVTQRVVSGTLTQLGELAQQVNS--PSLIIVGRVVG-LRDKLNWF 454 (457)
T ss_pred CCCCCcEEEEEEHHHHHHHHhcCCC--CEEEEEChhhc-hhhhhhhh
Confidence 999999999999999976 35544 49999997554 33444444
No 13
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional
Probab=99.93 E-value=4.7e-25 Score=191.36 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=118.2
Q ss_pred HHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCC--CcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeecccc
Q 027789 6 ADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLG--IQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW 81 (219)
Q Consensus 6 ~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~g--I~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~ 81 (219)
.+.+++.+++ ++||||++|||++||+..++++.+.+.+ +++++||||||++|| |++|+|++......++. ...
T Consensus 60 ~~~~i~~~~~g~~Vv~L~sGDP~~~g~~~~~~~~l~~~~~~~~veviPGiSs~~aaaa~~g~plt~~~~~~s~~---~~~ 136 (241)
T PRK15478 60 CQAAIELAQAGHNVALISSGDAGIYGMAGLVLELVSKQKLDVEVRLIPGMTASIAAASLLGAPLMHDFCHISLS---DLL 136 (241)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCcchhHHHHHHHHHhcCCCCcEEEeCCHHHHHHHHHHhCCCcccCcceeecc---cCC
Confidence 3456777776 9999999999999999999999998875 669999999999998 99999998766544432 111
Q ss_pred cCCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHH-HHHHHHHHHHhhcCCCCCCCeEEEEE
Q 027789 82 RPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIA-IEQLLEVELLQGESVYNEDTLCVGFA 160 (219)
Q Consensus 82 ~p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~-~~~L~~i~~~~~~~~~~~d~~vvvv~ 160 (219)
.|....+.-+..+.....|+|+ ||++++. ...+.+..+ +...++++|+|+++++
T Consensus 137 ~~~~~~~~~~~a~~~~~~tlvl------------------------ym~~~~~~~~~l~~~~~-ll~~g~~~~tPvaiv~ 191 (241)
T PRK15478 137 TPWPVIEKRIVAAGEADFVICF------------------------YNPRSRGREGHLARAFD-LLAASKSAQTPVGVVK 191 (241)
T ss_pred CCcHHHHHhHHHHhcCCeEEEE------------------------ECCcccccHHHHHHHHH-HHHccCCCCCEEEEEE
Confidence 2222222222334444457776 8988762 333433332 2335788999999999
Q ss_pred ecCCCCeEEEEEehhhhhhcccCCCceEEEEEccC
Q 027789 161 RLGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGET 195 (219)
Q Consensus 161 r~g~~de~I~~~~l~~l~~~~~~~p~~slIivg~l 195 (219)
++||++|+++.++|++|...++..| ++||+|+.
T Consensus 192 ~~t~~~q~~~~~tL~~l~~~~~~~~--~liivG~~ 224 (241)
T PRK15478 192 SAGRKKEEKWLTTLGDMDFEPVDMT--SLVIVGNK 224 (241)
T ss_pred eCCCCCeEEEEEEHHHhhhcCCCCc--eEEEECCe
Confidence 9999999999999999987555445 99999964
No 14
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=99.93 E-value=8.8e-25 Score=190.83 Aligned_cols=165 Identities=18% Similarity=0.136 Sum_probs=121.8
Q ss_pred hhhHHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeeccc
Q 027789 3 EEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTET 80 (219)
Q Consensus 3 e~~~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~ 80 (219)
++..+.|.+.+++ ++||+|+.|||++||++.++++++.+.|+++|+||||||++++ |++|+|++.++.+..+.+++.|
T Consensus 67 ~~i~~~i~~~~~~g~~Vv~L~sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~v~s~h 146 (257)
T PRK15473 67 EQIIDLMEAGVKAGKTVVRLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEYTVPEVSQSLIITRME 146 (257)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHHHcCCCcccccccccEEEEeec
Confidence 4455566676665 8999999999999999999999999999999999999999998 9999999976665555544444
Q ss_pred cc-CCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q 027789 81 WR-PGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGF 159 (219)
Q Consensus 81 ~~-p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv 159 (219)
.+ |.+..+.+.. +....+|+|+ ||+..+ ...+.+ .+.+.+++++++++++
T Consensus 147 G~~~~~~~~~l~~-~~~~~~t~vi------------------------~~~~~~-~~~i~~---~L~~~g~~~~~~v~v~ 197 (257)
T PRK15473 147 GRTPVPAREQLES-FASHQTSMAI------------------------FLSVQR-IHRVAE---RLIAGGYPATTPVAVI 197 (257)
T ss_pred CCCCCCchhhHHH-HhcCCCeEEE------------------------ECCchh-HHHHHH---HHHHcCCCCCCeEEEE
Confidence 33 3222334544 4455578887 555444 222333 3333567779999999
Q ss_pred EecCCCCeEEEEEehhhhhhc--ccCCCceEEEEEccCC
Q 027789 160 ARLGSEDQMIVAGTMRLLQMV--DFGAPLHCLVIVGETH 196 (219)
Q Consensus 160 ~r~g~~de~I~~~~l~~l~~~--~~~~p~~slIivg~l~ 196 (219)
+|+|+|+|+++.++++++.+. +.....+++|++|+.-
T Consensus 198 e~l~~~~E~i~~~tl~~l~~~~~~~~~~~~~~ivvG~~~ 236 (257)
T PRK15473 198 YKATWPESQTVRGTLADIAEKVRDAGIRKTALILVGNFL 236 (257)
T ss_pred EECCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEEchhc
Confidence 999999999999999998762 2122234999999743
No 15
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=99.93 E-value=2.7e-24 Score=188.32 Aligned_cols=161 Identities=24% Similarity=0.272 Sum_probs=123.4
Q ss_pred hhHHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeecccc
Q 027789 4 EKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW 81 (219)
Q Consensus 4 ~~~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~ 81 (219)
+..+.+.+.+.+ ++||+|+.|||++||++.+++.++.+.|+++++||||||+++| |++|+|++.++.+.++.+.++|.
T Consensus 80 ~~~~~i~~~~~~g~~Vvvl~~GDP~~ys~~~~l~~~l~~~~~~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~i~s~h~ 159 (263)
T PLN02625 80 EIHELLLSFAEAGKTVVRLKGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLTHRGVATSVRFLTGHD 159 (263)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCchhhhhHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCccceEEEEeccc
Confidence 444556677665 8999999999999999999999999999999999999999998 99999999988766777777876
Q ss_pred cCCChhH-HHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 027789 82 RPGSFYE-KIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFA 160 (219)
Q Consensus 82 ~p~~~~e-~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~ 160 (219)
++....+ ...+.+..+.+|+|+ |++... ..++.+.+. +.++++++++++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~t~vl------------------------~~~~~~-~~~i~~~L~---~~g~~~~~~v~v~e 211 (263)
T PLN02625 160 REGGTDPLDVAEAAADPDTTLVV------------------------YMGLGT-LPSLAEKLI---AAGLPPDTPAAAVE 211 (263)
T ss_pred CCCcccchhhHHHHhCCCCeEEE------------------------ECchhh-HHHHHHHHH---HcCCCCCCeEEEEE
Confidence 5533111 123334555678887 443332 223433333 34677789999999
Q ss_pred ecCCCCeEEEEEehhhhhh----cccCCCceEEEEEcc
Q 027789 161 RLGSEDQMIVAGTMRLLQM----VDFGAPLHCLVIVGE 194 (219)
Q Consensus 161 r~g~~de~I~~~~l~~l~~----~~~~~p~~slIivg~ 194 (219)
|+|+++|+|+.++++++.+ ..++.+ +++++|+
T Consensus 212 ~l~~~~E~i~~~tl~el~~~~~~~~~~~~--~vviig~ 247 (263)
T PLN02625 212 RGTTPEQRVVFGTLEDIAEDVAAAGLVSP--TVIVVGE 247 (263)
T ss_pred ECCCCCcEEEEEEHHHHHHHHHhcCCCCC--EEEEEch
Confidence 9999999999999999977 344445 9999995
No 16
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=99.92 E-value=2.4e-24 Score=186.72 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=113.3
Q ss_pred hHHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhC--CCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeeccc
Q 027789 5 KADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKL--GIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTET 80 (219)
Q Consensus 5 ~~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~--gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~ 80 (219)
.++.|.+.+++ ++||||+.|||++|||+.++++.+++. |++|||||||||++|+ |++|+|++..+++++|+. ++
T Consensus 81 ~~~~i~~~~~~g~~v~~l~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGIss~~a~aa~~g~pL~~~~e~l~ii~--~~ 158 (238)
T PRK05948 81 AADQVWHYLEQGEDVAFACEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGVCSPLAAAAALGIPLTLGSQRLAILP--AL 158 (238)
T ss_pred HHHHHHHHHHcCCeEEEEeCCChHHHHHHHHHHHHHHhcCCCCCEEEECChhHHHHHHHHhCCCeecCCCeEEEEc--CC
Confidence 45667788876 899999999999999999999999984 9999999999999998 999999999998777643 22
Q ss_pred ccCCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 027789 81 WRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFA 160 (219)
Q Consensus 81 ~~p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~ 160 (219)
. ..+.+.+.+ ...+|+| +|+++...+.+.+.+.+. ++.+ .+++++
T Consensus 159 ~----~~~~l~~~l-~~~~~vV-------------------------lmk~~~~~~~i~~~L~~~---g~~~--~~~vv~ 203 (238)
T PRK05948 159 Y----HLEELEQAL-TWADVVV-------------------------LMKVSSVYPQVWQWLKAR---NLLE--QASLVE 203 (238)
T ss_pred C----CHHHHHHHH-hCCCEEE-------------------------EEECCccHHHHHHHHHhC---CCCC--CEEEEE
Confidence 1 123444434 3467877 466655555555555443 4533 478999
Q ss_pred ecCCCCeEEEEEehhhhhhcccCCCceEEEEEcc
Q 027789 161 RLGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGE 194 (219)
Q Consensus 161 r~g~~de~I~~~~l~~l~~~~~~~p~~slIivg~ 194 (219)
|+|||+|+++. ++.++... ..+|+|++|+.+
T Consensus 204 ~~~~~~E~i~~-~l~~~~~~--~~~Y~S~iiv~~ 234 (238)
T PRK05948 204 RATTPEQVIYR-NLEDYPDL--RLPYFSLLIIQK 234 (238)
T ss_pred ECCCCCcEEEe-ehhhcCcC--CCCceEEEEEcC
Confidence 99999999886 56554332 458999999863
No 17
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=99.91 E-value=5.1e-24 Score=183.35 Aligned_cols=150 Identities=25% Similarity=0.294 Sum_probs=118.0
Q ss_pred hhhHHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeeccc
Q 027789 3 EEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTET 80 (219)
Q Consensus 3 e~~~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~ 80 (219)
++.+++|.+++.+ ++|+|++.|||++||||+++.++++.+|+++|+||||||++|+ |.+|+|+...+++.+|...+..
T Consensus 77 ~e~a~~va~~l~~G~~VAf~~lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVsS~~a~aa~~~~pL~~g~~~l~Vlp~t~~ 156 (234)
T COG2243 77 EEAAAEVAAELEAGRDVAFLTLGDPTFYSTFMYLLERLRERGFEVEVVPGVSSFSACAARLGVPLVEGDDSLSVLPATRP 156 (234)
T ss_pred HHHHHHHHHHHHcCCeEEEEEccCccHHHHHHHHHHHhhccCCceEEeCCcchHHHHHHHhCCceeccCceeEEEeccCc
Confidence 4667778888887 8999999999999999999999999999999999999999998 9999999999999888765432
Q ss_pred ccCCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 027789 81 WRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFA 160 (219)
Q Consensus 81 ~~p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~ 160 (219)
-+.+.+.+ ...+|+|+ ||+++..+.+.+++..++ .. ..+++++
T Consensus 157 ------~~~~~~~l-~~~d~~Vv-------------------------MK~~~~~~~i~~~l~~~g--~~---~~~~~v~ 199 (234)
T COG2243 157 ------DEELERAL-ADFDTAVV-------------------------MKVGRNFEKLRRLLAKLG--LL---DRAVYVE 199 (234)
T ss_pred ------hhhHHhHH-hhCCeEEE-------------------------EecCCcHHHHHHHHHhcC--CC---ceEEEEe
Confidence 12333323 34799995 777777777777755543 22 3567999
Q ss_pred ecCCCCeEEEEEehhhhhhcccCCCceEEEEEc
Q 027789 161 RLGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVG 193 (219)
Q Consensus 161 r~g~~de~I~~~~l~~l~~~~~~~p~~slIivg 193 (219)
|+++++|+|+. +.+....+. ||+|+|++-
T Consensus 200 R~~m~~e~i~~--l~~~~~~~~--~Yfs~ii~~ 228 (234)
T COG2243 200 RATMAGEKIVR--LAEAERDEK--PYFSTILVR 228 (234)
T ss_pred ecCCCCcEEEe--ccccCcccC--CceEEEEEe
Confidence 99999999987 444322222 899999874
No 18
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=99.91 E-value=1.4e-23 Score=181.90 Aligned_cols=149 Identities=16% Similarity=0.209 Sum_probs=106.2
Q ss_pred hhHHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeecccc
Q 027789 4 EKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW 81 (219)
Q Consensus 4 ~~~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~ 81 (219)
+.++.|.+++++ ++||||+.|||++|||+.|+++++. .++++||||||||++|+ |++|+|++..+++++++ +++
T Consensus 86 ~~~~~i~~~~~~G~~Vv~L~~GDP~iyst~~~l~~~l~-~~i~~evIPGISS~~aaaA~~gipL~~~~~~~~i~--~~~- 161 (241)
T PRK05990 86 TSAEAVAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLA-PRYETEVIPGVCSMLGCWSVLGAPLVYRNQSLSVL--SGV- 161 (241)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCcHHHhHHHHHHHHHh-cCCCEEEECcHHHHHHHHHHhCCCeEcCCeEEEEE--cCC-
Confidence 455678888886 8999999999999999999999985 48999999999999998 99999999988776654 222
Q ss_pred cCCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q 027789 82 RPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFAR 161 (219)
Q Consensus 82 ~p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~r 161 (219)
.+ .+.+++.+.. .++.|+| +.+...+.+.+.+.+ .+++ .++++++|
T Consensus 162 ~~---~~~l~~~l~~-~~~~vv~-------------------------k~~~~~~~i~~~L~~---~g~~--~~~~~v~~ 207 (241)
T PRK05990 162 LP---EEELRRRLAD-ADAAVIM-------------------------KLGRNLDKVRRVLAA---LGLL--DRALYVER 207 (241)
T ss_pred CC---hHHHHHHHhC-CCCEEEE-------------------------EeCCcHHHHHHHHHH---cCCC--CCEEEEEE
Confidence 11 2345555554 4555643 222222334443333 3453 25778899
Q ss_pred cCCCCeEEEEEehhhhhhcccCCCceEEEEEcc
Q 027789 162 LGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGE 194 (219)
Q Consensus 162 ~g~~de~I~~~~l~~l~~~~~~~p~~slIivg~ 194 (219)
+|||+|+++. +.++. ....||+|++|+.+
T Consensus 208 ~~~~~E~i~~--~~~~~--~~~~~Y~s~iiv~~ 236 (241)
T PRK05990 208 ATMANQRIVP--LAEVD--PMASPYFSLILVPG 236 (241)
T ss_pred CCCCCeEEEE--ccccC--CCCCCceEEEEEec
Confidence 9999999874 43332 23458999999953
No 19
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=99.90 E-value=3.9e-22 Score=173.34 Aligned_cols=152 Identities=13% Similarity=0.132 Sum_probs=109.7
Q ss_pred HHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCC--cEEEeCchhHHHHH-HHhCCCcccCCceEEEeeeccc--
Q 027789 7 DKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGI--QVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTET-- 80 (219)
Q Consensus 7 ~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI--~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~-- 80 (219)
+.+++.+++ ++||+|+.|||++||++.++++.+.++|+ ++++||||||++|| |++|+|++.... +.+.|
T Consensus 63 ~~~i~~~~~g~~Vv~l~~GDP~i~~~~~~~~~~l~~~~~~~~veviPGiSs~~aa~a~~g~pl~~~~~-----~~s~~~~ 137 (246)
T PRK05765 63 NTAIEKALEGNIVALVSSGDPQVYGMAGLVFELISRRKLDVDVEVIPGVTAALAAAARLGSPLSLDFV-----VISLSDL 137 (246)
T ss_pred HHHHHHHHCCCcEEEEeCCCchhhhhHHHHHHHHHhcCCCCCEEEeCCHHHHHHHHHHhCCCCcCCcE-----EEEcCCC
Confidence 457777776 89999999999999999999999999887 79999999999998 999999964222 22322
Q ss_pred ccCCCh-hHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHH-HHHHHHHHHHHHhhcCCCCCCCeEEE
Q 027789 81 WRPGSF-YEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVN-IAIEQLLEVELLQGESVYNEDTLCVG 158 (219)
Q Consensus 81 ~~p~~~-~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~-~~~~~L~~i~~~~~~~~~~~d~~vvv 158 (219)
..|... ..++.. +.....|+++ ||+.. ...+.+.+.+ +.++++++|+++
T Consensus 138 ~~p~~~~~~~l~~-~~~~~~~ivl------------------------y~~~~~~~~~~~~~~l----~~~~~~~~pv~v 188 (246)
T PRK05765 138 LIPREEILHRVTK-AAEADFVIVF------------------------YNPINENLLIEVMDIV----SKHRKPNTPVGL 188 (246)
T ss_pred CCChHHHHHHHHH-HhcCCeEEEE------------------------EcccchhHHHHHHHHH----HhcCCCCCEEEE
Confidence 123211 112222 3344456665 77642 2233233322 236888999999
Q ss_pred EEecCCCCeEEEEEehhhhhhc--ccCCCceEEEEEcc
Q 027789 159 FARLGSEDQMIVAGTMRLLQMV--DFGAPLHCLVIVGE 194 (219)
Q Consensus 159 v~r~g~~de~I~~~~l~~l~~~--~~~~p~~slIivg~ 194 (219)
++++||++|+++.++|+++.+. +++.| ++|++|+
T Consensus 189 v~~~t~~~E~i~~~tL~~l~~~~~~~~~~--~~iiVg~ 224 (246)
T PRK05765 189 VKSAYRNNENVVITTLSSWKEHMDEIGMT--TTMIIGN 224 (246)
T ss_pred EEeCCCCCeEEEEEEHHHhhhhhhcCCCc--eEEEECC
Confidence 9999999999999999998653 44444 9999995
No 20
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=99.89 E-value=4e-22 Score=166.93 Aligned_cols=142 Identities=30% Similarity=0.293 Sum_probs=106.9
Q ss_pred hhHHHH--HHHhcC-CCeEEEecCCccccccHHHHHHHHHh--CCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeee
Q 027789 4 EKADKI--LSESQE-SNVAFLVVGDPFGATTHTDLVVRAKK--LGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFF 77 (219)
Q Consensus 4 ~~~~~I--~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~--~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~ 77 (219)
+..+.| .+.+++ ++||+|+.|||++||++.++++++.+ .||++++||||||++++ |++|+|++.++....+.
T Consensus 62 ~~~~~i~~~~~~~~g~~V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~~g~~~~~~~~~~~~~-- 139 (210)
T PF00590_consen 62 EIAEIIEAIEAAKEGKDVVVLVSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAARLGIPLTDGGFISLHG-- 139 (210)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHHCTSTSSBTTTBEEEE--
T ss_pred HHHHHHHHHHHHhccCCEEEeCCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHHHcCCcccCcEEEEEE--
Confidence 444556 677776 89999999999999999999999999 99999999999999998 99999999999877765
Q ss_pred cccccCCC-hhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeE
Q 027789 78 TETWRPGS-FYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLC 156 (219)
Q Consensus 78 ~~~~~p~~-~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~v 156 (219)
..+.. ..+....++..+.+|+|+|+.. . .+.++.+.|.+ . ..++++++
T Consensus 140 ---~~~~~~~~~~~l~~~~~~~~~~vil~~~--------------------~-~~~~i~~~L~~----~---~~~~~~~v 188 (210)
T PF00590_consen 140 ---LRDLDTEREKLLENLLANGDTLVILTDP--------------------R-RLAEIAELLLE----R---LYPPDTPV 188 (210)
T ss_dssp ---TSSSSHHHHHHHHHHHTTTSEEEEEESG--------------------C-CHHHHHHHHHH----H---SHTTTSEE
T ss_pred ---ecccccchHHHHHHHHhCCCEEEEEccC--------------------c-hHHHHHHHHHh----h---CCCCCcEE
Confidence 11222 2233444455668999985332 1 34454444433 2 12457899
Q ss_pred EEEEecCCCCeEEEEEehhhhh
Q 027789 157 VGFARLGSEDQMIVAGTMRLLQ 178 (219)
Q Consensus 157 vvv~r~g~~de~I~~~~l~~l~ 178 (219)
.+++|+|+|+|+|+.+++++|+
T Consensus 189 ~v~~~lg~~~E~i~~~tl~ela 210 (210)
T PF00590_consen 189 AVGERLGYPDERIFRGTLEELA 210 (210)
T ss_dssp EEEESTTSTTEEEEEEEHHHHH
T ss_pred EHHHhcCCCCCEEEEeEHHHcC
Confidence 9999999999999999999875
No 21
>PRK05991 precorrin-3B C17-methyltransferase; Provisional
Probab=99.88 E-value=1.1e-21 Score=170.73 Aligned_cols=152 Identities=18% Similarity=0.106 Sum_probs=106.0
Q ss_pred HHHh-cCCCeEEEecCCccccccHHHHHHHHHh-----CCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeeccccc
Q 027789 10 LSES-QESNVAFLVVGDPFGATTHTDLVVRAKK-----LGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWR 82 (219)
Q Consensus 10 ~~~a-~~~~Vv~L~~GDP~iyst~~el~~~l~~-----~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~~ 82 (219)
++.+ ++++||+|+.|||++||++.++.+.+++ .|+++++||||||++|| |++|+|++......+ .|..
T Consensus 66 ~~~~~~g~~Vv~l~~GDP~~~~~~~~l~~~~~~g~~~~~~~~v~vvPGISS~~aa~a~~g~p~~~~~~~~s-----~~~~ 140 (250)
T PRK05991 66 LAMAAAGANVCVVSGGDPGVFAMAAAVCEAIENGPAAWRAVDLTIVPGVTAMLAVAARIGAPLGHDFCAIS-----LSDN 140 (250)
T ss_pred HHHHHCCCeEEEEeCCCchhhhhHHHHHHHHHhcccccCCceEEEECChHHHHHHHHHhCCCCCCCCEEee-----cccC
Confidence 4444 4589999999999999999999999875 47999999999999998 999999975532222 1210
Q ss_pred CCChhHHHHHHH---hcCCCeEEEe-eccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 027789 83 PGSFYEKIKRNR---SLGLHTLCLL-DIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVG 158 (219)
Q Consensus 83 p~~~~e~i~~~l---~~~~~TlvlL-d~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvv 158 (219)
..+++.+.+++ .....|+||+ +.+.. ..+++.++.+.|.+ ++.++.++++
T Consensus 141 -~~~~~~l~~~l~~~~~~~~~~vl~~~~~~~-----------------~p~~l~~~~~~L~~--------~~~~~~~v~v 194 (250)
T PRK05991 141 -LKPWELIEKRLRLAAEAGFVIALYNPISRA-----------------RPWQLGEAFDLLRE--------HLPATVPVIF 194 (250)
T ss_pred -CCCHHHHHHHHHhhcCCCeEEEEECCcccc-----------------chhhHHHHHHHHHh--------cCCCCCEEEE
Confidence 12233333333 2223556654 22211 13455554444433 3556889999
Q ss_pred EEecCCCCeEEEEEehhhhhhcccCCCceEEEEEcc
Q 027789 159 FARLGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGE 194 (219)
Q Consensus 159 v~r~g~~de~I~~~~l~~l~~~~~~~p~~slIivg~ 194 (219)
++|+|++||+|+.++++++.+.++ ++++++|+|.
T Consensus 195 ~~~lg~~dE~i~~~~l~el~~~~~--~~~s~vivg~ 228 (250)
T PRK05991 195 GRAAGRPDERIAVAPLAEADASMA--DMATCVIIGS 228 (250)
T ss_pred EEeCCCCCcEEEEEEHHHhhhhcc--CCCeEEEECC
Confidence 999999999999999999986555 5679999994
No 22
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=99.87 E-value=2.4e-21 Score=165.96 Aligned_cols=149 Identities=24% Similarity=0.271 Sum_probs=106.8
Q ss_pred hHHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeeccccc
Q 027789 5 KADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWR 82 (219)
Q Consensus 5 ~~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~~ 82 (219)
..+.|.+.+++ ++||+|+.|||++||++.++++++.+.|+++++||||||++|+ |++|+|++..+..+++. +++
T Consensus 79 ~~~~i~~~~~~g~~Vv~l~~GDP~~y~~~~~l~~~~~~~~~~veviPGiSs~~~a~a~~g~~l~~~~~~~~~~--~~~-- 154 (230)
T TIGR01467 79 AAEAVAAELEEGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIEVEVVPGITSFAACASAAGLPLVEGDESLAIL--PAT-- 154 (230)
T ss_pred HHHHHHHHHHCCCcEEEEeCCCCCcccCHHHHHHHHHHCCCcEEEeCChhHHHHHHHHhCCCcccCCceEEEE--eCC--
Confidence 34556777775 8999999999999999999999999989999999999999998 99999999877655553 222
Q ss_pred CCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEec
Q 027789 83 PGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARL 162 (219)
Q Consensus 83 p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~r~ 162 (219)
.. .+.+...+. ..+|+|+| |.... .+.+.+.+.+ .++ +.++++++|+
T Consensus 155 -~~-~~~~~~~~~-~~~~vvil------------------------~~~~~-~~~i~~~L~~---~g~--~~~v~v~e~l 201 (230)
T TIGR01467 155 -AG-EAELEKALA-EFDTVVLM------------------------KVGRN-LPQIKEALAK---LGR--LDAAVVVERA 201 (230)
T ss_pred -CC-HHHHHHHhc-cCCeEEEE------------------------ecCCC-HHHHHHHHHH---cCC--cccEEEEEEC
Confidence 11 234444444 35788874 22221 1123333332 234 3479999999
Q ss_pred CCCCeEEEEEehhhhhhcccCCCceEEEEEc
Q 027789 163 GSEDQMIVAGTMRLLQMVDFGAPLHCLVIVG 193 (219)
Q Consensus 163 g~~de~I~~~~l~~l~~~~~~~p~~slIivg 193 (219)
|+|+|+++.. +.++.+. ..+|+|++|+.
T Consensus 202 ~~~~E~i~~~-~~~~~~~--~~~y~s~~i~~ 229 (230)
T TIGR01467 202 TMPDEKIVDL-VREAIDD--ALPYFSTILVR 229 (230)
T ss_pred CCCCcEEEcc-ccccCCC--CCCeeEEEEec
Confidence 9999999875 6655322 44899999874
No 23
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase. This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis.
Probab=99.87 E-value=1.6e-20 Score=161.72 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=107.0
Q ss_pred HHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCC--CcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeeccccc
Q 027789 7 DKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLG--IQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWR 82 (219)
Q Consensus 7 ~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~g--I~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~~ 82 (219)
+.+++.+++ ++||+|+.|||++||+..++++.+.+.+ +++++||||||++++ |++|+|++.... ++-..++..
T Consensus 60 ~~~~~~~~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~~~~~v~viPGiSS~~aa~a~~g~p~~~~~~---~is~~~~~~ 136 (239)
T TIGR01466 60 ELAIELAAEGRTVALVSSGDPGIYGMAALVFEALEKKGAEVDIEVIPGITAASAAASLLGAPLGHDFC---VISLSDLLT 136 (239)
T ss_pred HHHHHHHhCCCCEEEEecCCCcccccHHHHHHHHHhcCCCCCEEEeCCccHHHHHHHHcCCCcccccE---EEECCCCCC
Confidence 445666666 9999999999999999999999998865 699999999999998 999999976422 211122222
Q ss_pred CCChh-HHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q 027789 83 PGSFY-EKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFAR 161 (219)
Q Consensus 83 p~~~~-e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~r 161 (219)
+.... +.+.. +..+..+++|++...+ .+.+.+.++.+.|. + ....++++++++|
T Consensus 137 ~~~~~~~~l~~-~~~~~~~~vl~~~~~~----------------~~~~~~~~i~~~L~----~----~~~~~~~v~v~~~ 191 (239)
T TIGR01466 137 PWPEIEKRLRA-AAEADFVIAIYNPRSK----------------RRPEQFRRAMEILL----E----HRKPDTPVGIVRN 191 (239)
T ss_pred CchHHHHHHHH-HhCCCcEEEEECCccc----------------chhhhHHHHHHHHH----h----cCCCCCEEEEEEE
Confidence 32221 12222 2222345665322100 00123333333222 2 2345889999999
Q ss_pred cCCCCeEEEEEehhhhhhcccCCCceEEEEEccCC
Q 027789 162 LGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGETH 196 (219)
Q Consensus 162 ~g~~de~I~~~~l~~l~~~~~~~p~~slIivg~l~ 196 (219)
+|+|+|+++.++++++.+.++ ++++++++++..
T Consensus 192 l~~~~E~i~~~~l~~l~~~~~--~~~s~iii~~~~ 224 (239)
T TIGR01466 192 AGREGEEVEITTLAELDEELI--DMLTTVIIGNSE 224 (239)
T ss_pred CCCCCeEEEEEEHHHHhhcCC--CCCeEEEECCch
Confidence 999999999999999976655 667999999643
No 24
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=99.87 E-value=5.1e-21 Score=164.24 Aligned_cols=146 Identities=23% Similarity=0.255 Sum_probs=107.7
Q ss_pred hhHHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeecccc
Q 027789 4 EKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW 81 (219)
Q Consensus 4 ~~~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~ 81 (219)
+..+.|.+.+++ ++||+|+.|||++||++.++++++.+.|+++++||||||++|| |++|+|++..++...|+.. +.
T Consensus 78 ~~~~~i~~~~~~g~~V~~l~~GDP~~y~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~iis~--~~ 155 (229)
T PRK05576 78 ENAEEIAAEAEEGKNVAFITLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASRAGVPLAMGDESLAIIPA--TR 155 (229)
T ss_pred HHHHHHHHHHHcCCcEEEEeCcCccccccHHHHHHHHHhCCCCEEEeCChhHHHHHHHHcCCCcccCCceEEEEEC--CC
Confidence 445567776666 8999999999999999999999999889999999999999998 9999999988876665432 21
Q ss_pred cCCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q 027789 82 RPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFAR 161 (219)
Q Consensus 82 ~p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~r 161 (219)
.+.+...+. ..+|+|||... ..+.. +.+.+.+ ++. ++++++|
T Consensus 156 -----~~~l~~~l~-~~~~~vl~~~~---------------------~~~~~----i~~~l~~---~~~----~v~v~e~ 197 (229)
T PRK05576 156 -----EALIEQALT-DFDSVVLMKVY---------------------KNFAL----IEELLEE---GYL----DALYVRR 197 (229)
T ss_pred -----HHHHHHHhh-cCCEEEEEecC---------------------CCHHH----HHHHHHh---cCC----CEEEEEE
Confidence 244444443 45888875321 22232 3333332 122 8999999
Q ss_pred cCCCCeEEEEEehhhhhhcccCCCceEEEEEc
Q 027789 162 LGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVG 193 (219)
Q Consensus 162 ~g~~de~I~~~~l~~l~~~~~~~p~~slIivg 193 (219)
+|+|||+|+.++..++. ..+|+|+||+-
T Consensus 198 l~~~~E~i~~~~~~~~~----~~~y~s~ii~~ 225 (229)
T PRK05576 198 AYMEGEQILRRLEEILD----DLDYFSTIIAN 225 (229)
T ss_pred CCCCCeEEEccccccCC----CCCeeEEEEEe
Confidence 99999999987666542 24899999874
No 25
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=99.86 E-value=1.1e-20 Score=159.25 Aligned_cols=149 Identities=19% Similarity=0.178 Sum_probs=99.9
Q ss_pred HHHHHHhcCCCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeecccccCCC
Q 027789 7 DKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGS 85 (219)
Q Consensus 7 ~~I~~~a~~~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~~p~~ 85 (219)
+.+....++++||+|+.|||++||.+.. +.++...++++++||||||++|+ |++|+|++.. .. .+.|.++..
T Consensus 59 ~~i~~~~~g~~V~~l~~GDP~~~~~~~~-~~~~~~~~~~veviPGiSs~~aaaa~~g~~l~~~---~~---is~~~~~~~ 131 (210)
T PRK05787 59 EWLELAAKGKNVVVLSTGDPLFSGLGKL-LKVRRAVAEDVEVIPGISSVQYAAARLGIDMNDV---VF---TTSHGRGPN 131 (210)
T ss_pred HHHHHhhCCCcEEEEecCCccccccHHH-HHHHhccCCCeEEEcCHHHHHHHHHHhCCCHHHc---EE---EeecCCCcc
Confidence 3444333458999999999999996544 44445446999999999999998 9999999842 12 223333322
Q ss_pred hhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEecCCC
Q 027789 86 FYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSE 165 (219)
Q Consensus 86 ~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~r~g~~ 165 (219)
. +.+...+..+.+++++.|.. -.+.+..+.|.+ .+ .+++++++++|+|+|
T Consensus 132 ~-~~l~~~~~~~~~~v~l~~~~---------------------~~~~~i~~~L~~-------~g-~~~~~~~v~~~l~~~ 181 (210)
T PRK05787 132 F-EELEDLLKNGRKVIMLPDPR---------------------FGPKEIAAELLE-------RG-KLERRIVVGENLSYP 181 (210)
T ss_pred h-HHHHHHHHcCCeEEEEcCCC---------------------CCHHHHHHHHHh-------CC-CCCcEEEEEEeCCCC
Confidence 2 44555554544444432222 133444443332 23 358899999999999
Q ss_pred CeEEEEEehhhhhhcccCCCceEEEEEcc
Q 027789 166 DQMIVAGTMRLLQMVDFGAPLHCLVIVGE 194 (219)
Q Consensus 166 de~I~~~~l~~l~~~~~~~p~~slIivg~ 194 (219)
+|+|+.++++++...++ +|++++++.+
T Consensus 182 ~E~i~~~~l~~~~~~~~--~~~s~v~v~~ 208 (210)
T PRK05787 182 DERIHKLTLSEIEPLEF--SDMSVVVILD 208 (210)
T ss_pred CeEEEeCCHHHHhhccc--CCcEEEEEec
Confidence 99999999988765554 6779888753
No 26
>KOG1527 consensus Uroporphyrin III methyltransferase [Coenzyme transport and metabolism]
Probab=99.86 E-value=4.7e-22 Score=178.28 Aligned_cols=157 Identities=19% Similarity=0.155 Sum_probs=124.4
Q ss_pred HHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeecccccCC
Q 027789 7 DKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPG 84 (219)
Q Consensus 7 ~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~~p~ 84 (219)
+...+.+.. ..|||||.|||.||||+.|++..++++|+-..|||||||..++ +.+|+|+|++|....+.|.||+.+-.
T Consensus 324 ~~~l~~l~~G~~VVRLKqGDPyifGRGGEE~~Ff~qhGy~p~ViPGIssal~~~~~agIP~ThRgvAdqvl~cTGtgrKG 403 (506)
T KOG1527|consen 324 ELLLNFLEAGATVVRLKQGDPYIFGRGGEEMDFFQQHGYRPQVIPGISSALGIAAEAGIPLTHRGVADQVLFCTGTGRKG 403 (506)
T ss_pred HHHHHHHhCCCEEEEecCCCceeecCCchhhhhHHhCCceeEeccchhhhhhhhHhcCCCcccccccceEEEEeccCCCC
Confidence 334555555 7999999999999999999999999999999999999999998 99999999999999999999875532
Q ss_pred ChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEecCC
Q 027789 85 SFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGS 164 (219)
Q Consensus 85 ~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~r~g~ 164 (219)
.- ..+-. +.. ..|.|+ ||...++.. +..++..+||+.|+|+++++|.++
T Consensus 404 ~~-p~ip~-fvp-~~TtVf------------------------lMaLhrl~~----L~q~L~~hGwp~d~Pa~ivERgsc 452 (506)
T KOG1527|consen 404 GT-PAIPA-FVP-DTTTVF------------------------LMALHRLPS----LAQKLMDHGWPSDTPAVIVERGSC 452 (506)
T ss_pred CC-CCccc-cCC-CceeEe------------------------eehhcchHH----HHHHHHhcCCCCCCCeeeEeccCC
Confidence 21 11111 222 355554 677776333 334455689999999999999999
Q ss_pred CCeEEEEEehhhhhh--cccCCCceEEEEEcc
Q 027789 165 EDQMIVAGTMRLLQM--VDFGAPLHCLVIVGE 194 (219)
Q Consensus 165 ~de~I~~~~l~~l~~--~~~~~p~~slIivg~ 194 (219)
||||++++.|++.++ ..++.-++.++|+|.
T Consensus 453 PdQR~vf~~Lkdv~ee~~~~gs~pPglliiGk 484 (506)
T KOG1527|consen 453 PDQRTVFAELKDVAEEIQSAGSVPPGLLIIGK 484 (506)
T ss_pred chHHHHHHHHHHHHHHHHhccCCCCcEEEEee
Confidence 999999999998877 356666679999995
No 27
>PRK08284 precorrin 6A synthase; Provisional
Probab=99.84 E-value=1.2e-20 Score=164.91 Aligned_cols=129 Identities=20% Similarity=0.237 Sum_probs=97.8
Q ss_pred HHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhC---CCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeeccc
Q 027789 6 ADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKL---GIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTET 80 (219)
Q Consensus 6 ~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~---gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~ 80 (219)
++.|.+++++ ++||||++|||++|||+.++++.+.+. |+++|+||||||++|+ |++|+|++..++++.++. ++
T Consensus 93 ~~~i~~~l~~g~~Vv~l~~GDP~~ys~~~~l~~~l~~~~~~~i~vevVPGISS~~aaaA~lg~pl~~~~~~l~ii~--g~ 170 (253)
T PRK08284 93 ERLIAEELPDGGTGAFLVWGDPSLYDSTLRILERVRARGRVAFDYEVIPGITSVQALAARHRIPLNRIGEPVHITT--GR 170 (253)
T ss_pred HHHHHHHHhCCCcEEEEeCCCcchhhHHHHHHHHHHhhccCCCcEEEECChhHHHHHHHHcCCChhcCCceEEEEe--cC
Confidence 4568888887 899999999999999999999999874 9999999999999998 999999999887776642 22
Q ss_pred ccCCChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 027789 81 WRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFA 160 (219)
Q Consensus 81 ~~p~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~ 160 (219)
.. ...+....+|+|+|..... ..+.|. ..+.++++++
T Consensus 171 -----~l---~~~l~~~~~~vvv~k~~~~------------------------~~~~L~-----------~~~~~v~v~e 207 (253)
T PRK08284 171 -----RL---AEGWPAGVDNVVVMLDGEC------------------------SFRRLD-----------DPDLEIWWGA 207 (253)
T ss_pred -----ch---HHHHHhcCCcEEEEECCcC------------------------CHHHHc-----------CCCCEEEEEe
Confidence 11 1222233577776432210 111121 1256899999
Q ss_pred ecCCCCeEEEEEehhhhhh
Q 027789 161 RLGSEDQMIVAGTMRLLQM 179 (219)
Q Consensus 161 r~g~~de~I~~~~l~~l~~ 179 (219)
|+|||+|+|+.++++++.+
T Consensus 208 ~l~~p~E~I~~~~l~ei~~ 226 (253)
T PRK08284 208 YLGTPDEILIAGPLAEVAE 226 (253)
T ss_pred cCCCCCeEEEEccHHHHHH
Confidence 9999999999988999876
No 28
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.84 E-value=1.5e-20 Score=158.56 Aligned_cols=148 Identities=19% Similarity=0.121 Sum_probs=100.4
Q ss_pred hhhHHHHHHHhcCCCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeecccc
Q 027789 3 EEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW 81 (219)
Q Consensus 3 e~~~~~I~~~a~~~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~ 81 (219)
|+..+.|.+.+++++||+|+.|||++||++.++.+.+.+ .++++||||||++++ |++|+|+... .+.+.|.
T Consensus 54 ~~~~~~i~~~~~g~~vv~l~~GDP~~~~~~~~l~~~~~~--~~v~iiPGiSs~~~a~a~~g~~l~~~------~~is~~~ 125 (204)
T TIGR02467 54 DELLEFIAATRKEKRVVVLASGDPLFYGIGRTLAERLGK--ERLEIIPGISSVQYAFARLGLPWQDA------VVISLHG 125 (204)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcccccHHHHHHhCCC--CcEEEeCChHHHHHHHHHcCCChhhC------eEEEeeC
Confidence 455566666655789999999999999999998888754 489999999999998 9999999522 2223332
Q ss_pred cCCChhHHHHHHHhcCCCeEEEe-eccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 027789 82 RPGSFYEKIKRNRSLGLHTLCLL-DIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFA 160 (219)
Q Consensus 82 ~p~~~~e~i~~~l~~~~~TlvlL-d~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~ 160 (219)
++.. +.....+..+ .++++| +.+ ..+.+..+.|. + .++++.+++++++
T Consensus 126 ~~~~--~~~~~~l~~~-~~~vvl~~~~---------------------~~~~~i~~~L~----~---~g~~~~~~v~v~~ 174 (204)
T TIGR02467 126 RELD--ELLLALLRGH-RKVAVLTDPR---------------------NGPAEIARELI----E---LGIGGSYELTVGE 174 (204)
T ss_pred CCCc--HHHHHHHhcC-CcEEEEeCCC---------------------CCHHHHHHHHH----H---CCCCCCeEEEEEc
Confidence 2221 1123334444 455542 111 12344333333 2 3566566999999
Q ss_pred ecCCCCeEEEEEehhhhhhcccCCCceEE
Q 027789 161 RLGSEDQMIVAGTMRLLQMVDFGAPLHCL 189 (219)
Q Consensus 161 r~g~~de~I~~~~l~~l~~~~~~~p~~sl 189 (219)
|+|+++|+++.++++++.+..+.....++
T Consensus 175 ~l~~~~E~i~~~tl~el~~~~~~~~~~~~ 203 (204)
T TIGR02467 175 NLGYEDERITEGTLEEIAAAQFDFSPLLV 203 (204)
T ss_pred ccCCCCeEEEeCCHHHHhhcccCCcccee
Confidence 99999999999999999776444454454
No 29
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=99.82 E-value=6e-20 Score=160.24 Aligned_cols=129 Identities=20% Similarity=0.219 Sum_probs=97.3
Q ss_pred hHHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHh---CCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeecc
Q 027789 5 KADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKK---LGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTE 79 (219)
Q Consensus 5 ~~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~---~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~ 79 (219)
.++.|.+.+++ ++||+|++|||++|||+.++++++.+ .|+++||||||||++|+ |++|+|++..++.+.++. +
T Consensus 91 ~a~~i~~~~~~g~~Vv~L~~GDP~~yst~~~l~~~l~~~~~~~~~vevVPGISS~~aaaA~lg~pl~~~~~~l~v~~--g 168 (249)
T TIGR02434 91 WAQAIAEELGDDGTGAFLVWGDPSLYDSTLRILERLRALGGVPFDYEVIPGITSVQALTARHRIPLNRIGEPVQITT--G 168 (249)
T ss_pred HHHHHHHHHhCCCcEEEEeCCCchHhhhHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHhCCCcccCCceEEEEe--c
Confidence 45667887876 99999999999999999999999987 47999999999999998 999999999887766643 2
Q ss_pred cccCCChhHHHHHH-HhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 027789 80 TWRPGSFYEKIKRN-RSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVG 158 (219)
Q Consensus 80 ~~~p~~~~e~i~~~-l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvv 158 (219)
+ ..+ .. +. ..+++|+|..... . ...+. . .+.++.+
T Consensus 169 ~-----~l~---~~~l~-~~~~~vilk~~~~--------------------~----~~~l~-------~----~~~~~~v 204 (249)
T TIGR02434 169 R-----RLA---EGGFP-EGDTVVVMLDGEQ--------------------A----FQRVD-------P----EDIDIYW 204 (249)
T ss_pred c-----chh---hcccc-CCCeEEEEECCcc--------------------C----HHHhc-------C----CCCEEEE
Confidence 1 111 11 22 3577886532210 0 11121 1 2558999
Q ss_pred EEecCCCCeEEEEEehhhhhh
Q 027789 159 FARLGSEDQMIVAGTMRLLQM 179 (219)
Q Consensus 159 v~r~g~~de~I~~~~l~~l~~ 179 (219)
++|+|+|+|+|+.+++.++.+
T Consensus 205 ~e~lg~pdE~I~~~~l~~l~~ 225 (249)
T TIGR02434 205 GAYLGTPDEILISGPLAEVGP 225 (249)
T ss_pred EEeCCCCCeEEEEccHHHHHH
Confidence 999999999999988888766
No 30
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=99.80 E-value=1.5e-18 Score=154.31 Aligned_cols=138 Identities=22% Similarity=0.292 Sum_probs=110.7
Q ss_pred hhHHHHHHHhcC-CCeEEEe-cCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeeccc
Q 027789 4 EKADKILSESQE-SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTET 80 (219)
Q Consensus 4 ~~~~~I~~~a~~-~~Vv~L~-~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~ 80 (219)
+.++.|++.+++ ++||+++ .|||+||+++.+++.++.+.||+|++|||+||++|| +.+|+|..+| .| .+
T Consensus 72 ~~~~~i~~~l~~G~~ValvSdaGdP~I~dpg~~Lv~~~~~~gi~v~vIPGiSA~~aA~a~sG~~~~~f------~f--~G 143 (287)
T PRK14994 72 QKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRF------CY--EG 143 (287)
T ss_pred HHHHHHHHHHHCCCeEEEEccCCCCceeCCHHHHHHHHHHCCCCEEEeCCHHHHHHHHHHcCCCCCcc------eE--eE
Confidence 566788888887 8999996 999999999999999999999999999999999998 9999994321 11 11
Q ss_pred ccCCCh---hHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q 027789 81 WRPGSF---YEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCV 157 (219)
Q Consensus 81 ~~p~~~---~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vv 157 (219)
+.|... .+.+.+ +....+|+|+ |+++++..+.|.++.+. ++++++++
T Consensus 144 flp~~~~~r~~~L~~-l~~~~~t~V~------------------------yesp~R~~~~l~~l~~~-----~g~~~~v~ 193 (287)
T PRK14994 144 FLPAKSKGRRDALKA-LEAEPRTLIF------------------------YESTHRLLDSLEDIVAV-----LGESRYVV 193 (287)
T ss_pred ECCCCCchHHHHHHH-HhcCCCeEEE------------------------EEEChhHHHHHHHHHHh-----cCCCCeEE
Confidence 234321 344555 4455789996 67778888888777664 44578999
Q ss_pred EEEecCCCCeEEEEEehhhhhh
Q 027789 158 GFARLGSEDQMIVAGTMRLLQM 179 (219)
Q Consensus 158 vv~r~g~~de~I~~~~l~~l~~ 179 (219)
++.++|+.+|.+++++++++.+
T Consensus 194 i~relTk~~E~~~~g~~~~i~~ 215 (287)
T PRK14994 194 LARELTKTWETIHGAPVGELLA 215 (287)
T ss_pred EEeeccCCCCcEEeeEHHHHHH
Confidence 9999999999999999999866
No 31
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=99.68 E-value=8.2e-16 Score=131.88 Aligned_cols=157 Identities=18% Similarity=0.219 Sum_probs=108.9
Q ss_pred hhHHHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCC---CcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeec
Q 027789 4 EKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLG---IQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFT 78 (219)
Q Consensus 4 ~~~~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~g---I~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~ 78 (219)
+.+++-++.|+. ++||.+.+|||.|||-..-.++.+.+.| +++|||||||+++|+ |.+|-||.+.--..| .+
T Consensus 60 ~Ra~~AielA~~G~~ValVSsGDpgVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~IS---LS 136 (249)
T COG1010 60 ERAKEAIELAAEGRDVALVSSGDPGVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVIS---LS 136 (249)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCccHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEE---hH
Confidence 445667788887 8999999999999998888888888654 999999999999998 999999976543333 35
Q ss_pred ccccCCChh-HHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHH----HHHHHHHHHHHhhcCCCCCC
Q 027789 79 ETWRPGSFY-EKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNI----AIEQLLEVELLQGESVYNED 153 (219)
Q Consensus 79 ~~~~p~~~~-e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~----~~~~L~~i~~~~~~~~~~~d 153 (219)
....|-... +++......++- ++| |=..++ .+....+++.+ ..+++
T Consensus 137 DlLtPwe~IekRl~aAA~adfV-i~~------------------------YNP~s~~R~~~~~~a~eil~~----~r~~~ 187 (249)
T COG1010 137 DLLTPWEVIEKRLRAAAEADFV-IAL------------------------YNPISKRRPEQLGRAFEILRE----HRSPD 187 (249)
T ss_pred hcCCcHHHHHHHHHHHhhCCEE-EEE------------------------ECCccccchHHHHHHHHHHHH----hcCCC
Confidence 555554332 233333333221 222 211111 11122233333 35679
Q ss_pred CeEEEEEecCCCCeEEEEEehhhhhh-cccCCCceEEEEEcc
Q 027789 154 TLCVGFARLGSEDQMIVAGTMRLLQM-VDFGAPLHCLVIVGE 194 (219)
Q Consensus 154 ~~vvvv~r~g~~de~I~~~~l~~l~~-~~~~~p~~slIivg~ 194 (219)
+||.++-++|-++|.+..++|+++.+ ... ...|++|+|+
T Consensus 188 tpVgivrnagR~~e~v~ittL~~l~~~~~i--DM~T~vIIGn 227 (249)
T COG1010 188 TPVGIVRNAGREGEEVRITTLGDLDEAEEI--DMRTIVIIGN 227 (249)
T ss_pred CcEEEEecCCCCCceEEEEEhHHhcccccc--cceEEEEEcC
Confidence 99999999999999999999999874 333 4569999995
No 32
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=99.65 E-value=2.4e-15 Score=128.01 Aligned_cols=148 Identities=20% Similarity=0.181 Sum_probs=104.1
Q ss_pred hHHHHHHHhcCCCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeecccccC
Q 027789 5 KADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRP 83 (219)
Q Consensus 5 ~~~~I~~~a~~~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~~p 83 (219)
..+.+.++.++++||.|.+|||++||=...+...... -+++|||||||+++| |++|+++... .+.+.|.++
T Consensus 58 ~l~~i~~~~~g~~v~VLasGDP~f~G~g~~l~~~~~~--~~v~iIPgiSS~q~a~ARlg~~~~~~------~~islHgr~ 129 (210)
T COG2241 58 SLEEILAERKGRDVVVLASGDPLFSGVGRLLRRKFSC--EEVEIIPGISSVQLAAARLGWPLQDT------EVISLHGRP 129 (210)
T ss_pred HHHHHHHHhCCCCeEEEecCCcchhhhHHHHHHhcCc--cceEEecChhHHHHHHHHhCCChHHe------EEEEecCCC
Confidence 3445555555789999999999999955444443332 689999999999998 9999999743 334445333
Q ss_pred CChhHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEecC
Q 027789 84 GSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLG 163 (219)
Q Consensus 84 ~~~~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~r~g 163 (219)
.+.+...+ .+++.+++|--+ =.++++.++.|.+ .|++ ++++++.+|+|
T Consensus 130 ---~~~l~~~~-~~~~~~vil~~~--------------------~~~P~~IA~~L~~-------~G~~-~~~~~VlE~L~ 177 (210)
T COG2241 130 ---VELLRPLL-ENGRRLVILTPD--------------------DFGPAEIAKLLTE-------NGIG-DSRVTVLENLG 177 (210)
T ss_pred ---HHHHHHHH-hCCceEEEeCCC--------------------CCCHHHHHHHHHh-------CCCC-CceEEEEcccC
Confidence 34454434 456777764111 1356776665554 4676 79999999999
Q ss_pred CCCeEEEEEehhhhhhcccCCCceEEEEEcc
Q 027789 164 SEDQMIVAGTMRLLQMVDFGAPLHCLVIVGE 194 (219)
Q Consensus 164 ~~de~I~~~~l~~l~~~~~~~p~~slIivg~ 194 (219)
++|||+..++++++...++ .+++++++..
T Consensus 178 ~~~Eri~~~~~~~~~~~~f--sdlnVv~v~~ 206 (210)
T COG2241 178 YPDERITDGTAEDIAAEEF--SDLNVVAVEK 206 (210)
T ss_pred CCchhhhcCchhhhccccc--CCceEEEEEc
Confidence 9999999999998776654 4458887764
No 33
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=98.97 E-value=3.2e-08 Score=87.22 Aligned_cols=151 Identities=24% Similarity=0.293 Sum_probs=116.1
Q ss_pred hhHHHHHHHhcC-CCeEEE-ecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeeccc
Q 027789 4 EKADKILSESQE-SNVAFL-VVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTET 80 (219)
Q Consensus 4 ~~~~~I~~~a~~-~~Vv~L-~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~ 80 (219)
+....|++..++ ++|+.+ -.|=|.|..=+..+.+++.++||+|+.+||.||+..| ..+|+|-.+| .| .+
T Consensus 65 ~~~~~li~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SGl~~~~F------~F--~G 136 (275)
T COG0313 65 EKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSASGLPSQRF------LF--EG 136 (275)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHcCCCCCCe------eE--ec
Confidence 455678888887 699998 6899999999999999999999999999999999988 9999987633 22 23
Q ss_pred ccCCCh---hHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q 027789 81 WRPGSF---YEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCV 157 (219)
Q Consensus 81 ~~p~~~---~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vv 157 (219)
+.|... .+.++. +.....|+|+ |=++.+..+-|.++.+- ++++.+++
T Consensus 137 FLP~k~~~R~~~l~~-l~~~~~t~If------------------------yEsphRl~~tL~d~~~~-----~g~~r~v~ 186 (275)
T COG0313 137 FLPRKSKERRKRLEA-LANEPRTLIF------------------------YESPHRLLATLEDIVEV-----LGSDREVV 186 (275)
T ss_pred cCCCCccHHHHHHHH-HHhcCCeEEE------------------------EecchhHHHHHHHHHHH-----cCCCceEE
Confidence 455433 233444 4555678776 78889888878777664 44578999
Q ss_pred EEEecCCCCeEEEEEehhhhhhc---c-cCCCceEEEEEc
Q 027789 158 GFARLGSEDQMIVAGTMRLLQMV---D-FGAPLHCLVIVG 193 (219)
Q Consensus 158 vv~r~g~~de~I~~~~l~~l~~~---~-~~~p~~slIivg 193 (219)
++-.++-.-|.+++++++++.+. . .+.+ ..++|-|
T Consensus 187 vaRELTK~~Ee~~~g~~~e~~~~~~~~~~KGE-~vlvv~~ 225 (275)
T COG0313 187 VARELTKLFEEIYRGTLSELIEWLEEDTLKGE-FVLVVEG 225 (275)
T ss_pred EEeecccchhheecccHHHHHHHhhhcCCccc-EEEEEeC
Confidence 99999999999999999998662 2 4445 3444445
No 34
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=98.81 E-value=2e-07 Score=82.83 Aligned_cols=138 Identities=21% Similarity=0.227 Sum_probs=104.1
Q ss_pred hhHHHHHHHhcC-CCeEEE-ecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeeccc
Q 027789 4 EKADKILSESQE-SNVAFL-VVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTET 80 (219)
Q Consensus 4 ~~~~~I~~~a~~-~~Vv~L-~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~ 80 (219)
+....+++..+. ++||++ -.|=|.|..=+..+.+++.+.||.|.++||.|++++| +..|++-..| .-++
T Consensus 60 ~~~~~l~~~l~~g~~valvSDAG~P~ISDPG~~LV~~~~~~~i~v~~ipG~sA~~~Al~~SG~~~~~f--------~F~G 131 (276)
T TIGR00096 60 EKQNLLAAKLEIGNNIAVSSDAGPPLISDPGHLLVACREKANIIVVPLPGAAALTAALCASGPATDRF--------FFGG 131 (276)
T ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCcCCccHHHHHHHHHCCCeEEcCChHHHHHHHHHhcCCCCCce--------EEee
Confidence 344567777776 889999 6899999999999999999999999999999999999 9999876522 2233
Q ss_pred ccCCCh--hHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 027789 81 WRPGSF--YEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVG 158 (219)
Q Consensus 81 ~~p~~~--~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvv 158 (219)
+.|... .+.+.+.+.....|+|+ |-++.+..+.|..+. + +.++.++++
T Consensus 132 Flp~k~~~r~~~l~~l~~~~~t~if------------------------yEsp~Rl~~~L~~l~-~-----~~g~r~i~~ 181 (276)
T TIGR00096 132 FLPKKSKRRQALKAYIAEERTTVFF------------------------YESHHRLLTTLTDLN-V-----FLGSERFVG 181 (276)
T ss_pred eCCCChHHHHHHHHHHhCCCCeEEE------------------------EECcHhHHHHHHHHH-H-----hcCCceEEE
Confidence 445432 33444445566677775 677777666555432 2 223678999
Q ss_pred EEecCCCCeEEEEEehhhhhh
Q 027789 159 FARLGSEDQMIVAGTMRLLQM 179 (219)
Q Consensus 159 v~r~g~~de~I~~~~l~~l~~ 179 (219)
+-..+-..|.+++++++++..
T Consensus 182 arELTK~~E~~~~g~~~e~~~ 202 (276)
T TIGR00096 182 AAELTKKESEYWFGTVGQLLP 202 (276)
T ss_pred EEecCCCceEEEeCCHHHHHH
Confidence 999999999999999999865
No 35
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=98.00 E-value=7.4e-05 Score=68.06 Aligned_cols=149 Identities=18% Similarity=0.179 Sum_probs=100.7
Q ss_pred hhHHHHHHHhcCCCeEEEecCCccccccHHHHHHHHHhC-CCcEEEeCchhHHHHH-HHhCCCcccCCceEEEeeecccc
Q 027789 4 EKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKL-GIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW 81 (219)
Q Consensus 4 ~~~~~I~~~a~~~~Vv~L~~GDP~iyst~~el~~~l~~~-gI~vevVPGVSs~~Aa-a~~gl~l~~~g~~~si~~~~~~~ 81 (219)
..++.+++.|++|+++..++|-|+++-+-..++.++.+. +|.|.|.+|.|=.-|. .++.+...++=+ ++
T Consensus 71 ~I~~~LveaAkekdIvYAVPGHP~VAEktVqlL~e~~ek~ni~Vkilgg~SFiD~~fealkiDPveG~q---~v------ 141 (488)
T COG3956 71 FIAADLVEAAKEKDIVYAVPGHPLVAEKTVQLLIEACEKENIKVKILGGQSFIDALFEALKIDPVEGFQ---IV------ 141 (488)
T ss_pred HHHHHHHHhhcccceEEecCCCchhHHHHHHHHHHHHhccCceEEEeCcchhHHHHHHHhcCCcccCce---Ee------
Confidence 456778899999999999999999999988888887765 7999999999888887 999997765432 21
Q ss_pred cCCCh-hHHHHHHHhcCCCeEEEeeccccCchhhhhhcCCccCCCCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 027789 82 RPGSF-YEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFA 160 (219)
Q Consensus 82 ~p~~~-~e~i~~~l~~~~~TlvlLd~~~~~~~~~~l~~~~~~~~~~~~M~~~~~~~~L~~i~~~~~~~~~~~d~~vvvv~ 160 (219)
.... .+++.. ...|+++ ..+.. -|-++++---|++ -+++|.++.++.
T Consensus 142 -Da~~l~~~il~---vr~hivI-tQVY~-------------------~miAs~vKltLmE--------~ypDDyev~ivt 189 (488)
T COG3956 142 -DATDLSNDILD---VRLHIVI-TQVYD-------------------QMIASDVKLTLME--------YYPDDYEVYIVT 189 (488)
T ss_pred -ccchhhHHHHh---hhhceee-hhHHH-------------------HHHHHhHHHHHHH--------hCCCCceEEEEE
Confidence 1111 122222 2245544 22211 2444443222332 378899999999
Q ss_pred ecCCCCeE-EEEEehhhhhhcccCCCceEEEEEc
Q 027789 161 RLGSEDQM-IVAGTMRLLQMVDFGAPLHCLVIVG 193 (219)
Q Consensus 161 r~g~~de~-I~~~~l~~l~~~~~~~p~~slIivg 193 (219)
-+|..++. +..+.|-+|-...-=+...|+++|-
T Consensus 190 aags~~ee~v~tvPLyELDr~~ainnLTsVyVP~ 223 (488)
T COG3956 190 AAGSENEESVRTVPLYELDRQSAINNLTSVYVPP 223 (488)
T ss_pred eccCCCccceeeecceeechhhhhhhcceeeccc
Confidence 99999998 7667777764432112345777775
No 36
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=85.62 E-value=2 Score=37.07 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=35.7
Q ss_pred CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHH
Q 027789 16 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNA 57 (219)
Q Consensus 16 ~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~A 57 (219)
..-+.+++|+|+++.-..++++++++.|+.+.+.-+-|....
T Consensus 73 ~~~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~ 114 (238)
T TIGR03365 73 PLHVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQD 114 (238)
T ss_pred CCeEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHH
Confidence 356899999999998889999999999999998877775544
No 37
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=85.27 E-value=2.6 Score=34.48 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=30.2
Q ss_pred CeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchh
Q 027789 17 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNAS 53 (219)
Q Consensus 17 ~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVS 53 (219)
..+.+++|||+++..+.++++.+++.|+.+.+..+-+
T Consensus 64 ~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~TNg~ 100 (191)
T TIGR02495 64 DGVVITGGEPTLQAGLPDFLRKVRELGFEVKLDTNGS 100 (191)
T ss_pred CeEEEECCcccCcHhHHHHHHHHHHCCCeEEEEeCCC
Confidence 4667899999999888899999999888777765443
No 38
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=78.50 E-value=5.6 Score=33.95 Aligned_cols=49 Identities=24% Similarity=0.397 Sum_probs=36.5
Q ss_pred HHHHHHHhcC----CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhH
Q 027789 6 ADKILSESQE----SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 54 (219)
Q Consensus 6 ~~~I~~~a~~----~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs 54 (219)
+++|++..++ ..-+-+++|+|++.--..+++..+++.|+.+.+=-+=|.
T Consensus 58 ~~~I~~~i~~~~~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETngti 110 (212)
T COG0602 58 ADEILADIKSLGYKARGVSLTGGEPLLQPNLLELLELLKRLGFRIALETNGTI 110 (212)
T ss_pred HHHHHHHHHhcCCCcceEEEeCCcCCCcccHHHHHHHHHhCCceEEecCCCCc
Confidence 4555555543 235779999999987889999999999988888764443
No 39
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=74.76 E-value=7 Score=29.89 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=34.7
Q ss_pred hhHHHHHHHhcC--CCeEEEecCCccc---cccHHHHHHHHHhCCC-cEEEeCchh
Q 027789 4 EKADKILSESQE--SNVAFLVVGDPFG---ATTHTDLVVRAKKLGI-QVKAVHNAS 53 (219)
Q Consensus 4 ~~~~~I~~~a~~--~~Vv~L~~GDP~i---yst~~el~~~l~~~gI-~vevVPGVS 53 (219)
+..+++++.+++ ..-+.+++|+|++ +....+++..+++.+. .+-+.-..+
T Consensus 39 ~~~~~ii~~~~~~~~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~~~~~~~~tng~ 94 (139)
T PF13353_consen 39 EIIEEIIEELKNYGIKGIVLTGGEPLLHENYDELLEILKYIKEKFPKKIIILTNGY 94 (139)
T ss_dssp HHHHHHCHHHCCCCCCEEEEECSTGGGHHSHHHHHHHHHHHHHTT-SEEEEEETT-
T ss_pred hhhhhhhhHHhcCCceEEEEcCCCeeeeccHhHHHHHHHHHHHhCCCCeEEEECCC
Confidence 455677777754 4667788999999 8888888888888877 444443333
No 40
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=67.24 E-value=13 Score=33.92 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=37.3
Q ss_pred HHHHHHHhcC-C-CeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchh
Q 027789 6 ADKILSESQE-S-NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNAS 53 (219)
Q Consensus 6 ~~~I~~~a~~-~-~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVS 53 (219)
..++++.+.+ + ..+.+++|+|++.--+.++++++++.|+.+.+.-+-+
T Consensus 51 ~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~il~~~~~~g~~~~i~TNG~ 100 (378)
T PRK05301 51 WIRVLREARALGALQLHFSGGEPLLRKDLEELVAHARELGLYTNLITSGV 100 (378)
T ss_pred HHHHHHHHHHcCCcEEEEECCccCCchhHHHHHHHHHHcCCcEEEECCCc
Confidence 3456666654 3 4567889999999999999999999999888876654
No 41
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=67.00 E-value=13 Score=33.52 Aligned_cols=47 Identities=19% Similarity=0.400 Sum_probs=36.3
Q ss_pred HHHHHHhcC--CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchh
Q 027789 7 DKILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNAS 53 (219)
Q Consensus 7 ~~I~~~a~~--~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVS 53 (219)
.++++.+.+ -..+.+++|+|++.--+.++++.+++.|+.+.+.-.-+
T Consensus 43 ~~ii~~~~~~g~~~v~~~GGEPll~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 43 TDVLTQAAELGVLQLHFSGGEPLARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred HHHHHHHHhcCCcEEEEeCccccccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 456666554 24567899999999999999999999999887765443
No 42
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=66.15 E-value=4.5 Score=30.27 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=21.2
Q ss_pred CeEEEecCCcccccc---HHHHHHHHHhCC--CcEEEeCchh
Q 027789 17 NVAFLVVGDPFGATT---HTDLVVRAKKLG--IQVKAVHNAS 53 (219)
Q Consensus 17 ~Vv~L~~GDP~iyst---~~el~~~l~~~g--I~vevVPGVS 53 (219)
.-+.+++|+|+++-. ..++++++++.+ +.+.+.-+.+
T Consensus 49 ~~v~~~GGEPll~~~~~~l~~~i~~~~~~~~~~~i~i~TNg~ 90 (119)
T PF13394_consen 49 STVVFTGGEPLLYLNPEDLIELIEYLKERGPEIKIRIETNGT 90 (119)
T ss_dssp -EEEEESSSGGGSTTHHHHHHHHCTSTT-----EEEEEE-ST
T ss_pred EEEEEECCCCccccCHHHHHHHHHHHHhhCCCceEEEEeCCe
Confidence 448999999999833 445555566655 5555554433
No 43
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=65.03 E-value=12 Score=33.99 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=34.8
Q ss_pred HHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhH
Q 027789 11 SESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 54 (219)
Q Consensus 11 ~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs 54 (219)
++|.+ ++|++=-.|+|+++-...++++++++.|+.+-++-+-+.
T Consensus 125 ~ea~~~~~v~iSl~GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 125 EEAMEPKHVAISLSGEPTLYPYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred hhccCCCEEEEeCCccccchhhHHHHHHHHHHcCCCEEEECCCCC
Confidence 34444 566666589999999999999999999999988865554
No 44
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=62.51 E-value=16 Score=27.73 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=29.1
Q ss_pred hhhHHHHHHH-hcC-CCeEEEecCCccccccHHHHHHHHHhC
Q 027789 3 EEKADKILSE-SQE-SNVAFLVVGDPFGATTHTDLVVRAKKL 42 (219)
Q Consensus 3 e~~~~~I~~~-a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~ 42 (219)
|+..+.+.+. ... ...+++..|||+.+..+.+++..+.+.
T Consensus 31 e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~~~~~~~~~~~~ 72 (166)
T PF04055_consen 31 EEILEEIKELKQDKGVKEIFFGGGEPTLHPDFIELLELLRKI 72 (166)
T ss_dssp HHHHHHHHHHHHHTTHEEEEEESSTGGGSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHhcCCcEEEEeecCCCcchhHHHHHHHHHHh
Confidence 3444444444 233 678899999999999998888888875
No 45
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=61.79 E-value=19 Score=31.64 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=35.1
Q ss_pred HHHHHHhcC--CCeEEEecCCccccccHHHHHHHHHhCCC-cEEEeCchh
Q 027789 7 DKILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKKLGI-QVKAVHNAS 53 (219)
Q Consensus 7 ~~I~~~a~~--~~Vv~L~~GDP~iyst~~el~~~l~~~gI-~vevVPGVS 53 (219)
..+++.+.. -.-+++++|+|++.-...++++.+++.|+ .+.+.-.-+
T Consensus 46 ~~~i~~~~~~gi~~I~~tGGEPll~~~l~~iv~~l~~~g~~~v~i~TNG~ 95 (302)
T TIGR02668 46 ERIVRVASEFGVRKVKITGGEPLLRKDLIEIIRRIKDYGIKDVSMTTNGI 95 (302)
T ss_pred HHHHHHHHHcCCCEEEEECcccccccCHHHHHHHHHhCCCceEEEEcCch
Confidence 445555543 35577899999999999999999998888 777765443
No 46
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=61.22 E-value=18 Score=30.36 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=28.0
Q ss_pred CeEEEecCCccccccHH-HHHHHHHhCCCcEEEeCch
Q 027789 17 NVAFLVVGDPFGATTHT-DLVVRAKKLGIQVKAVHNA 52 (219)
Q Consensus 17 ~Vv~L~~GDP~iyst~~-el~~~l~~~gI~vevVPGV 52 (219)
..+.+++|+|++.--+. ++++.+++.|+.+.+.-+-
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~TNG 103 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKACKELGIHTCLDTSG 103 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 45777899999998754 8888888888887765433
No 47
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=57.45 E-value=53 Score=25.13 Aligned_cols=47 Identities=13% Similarity=-0.028 Sum_probs=35.3
Q ss_pred CCCeEEEecCCccccccHHHHHHHHHhCC-----CcEEEeCchhHHHHHHHhCCCc
Q 027789 15 ESNVAFLVVGDPFGATTHTDLVVRAKKLG-----IQVKAVHNASVMNAVGICGLQL 65 (219)
Q Consensus 15 ~~~Vv~L~~GDP~iyst~~el~~~l~~~g-----I~vevVPGVSs~~Aaa~~gl~l 65 (219)
..+.+...+|| ||..+.+..+.+.+ .++-++|+-|.=.-|-.+|++.
T Consensus 49 ~~d~vvv~GGD----GTi~~vvn~l~~~~~~~~~~plgiiP~GTgNdfar~lgi~~ 100 (124)
T smart00046 49 KFDRVLVCGGD----GTVGWVLNALDKRELPLPEPPVAVLPLGTGNDLARSLGWGG 100 (124)
T ss_pred cCCEEEEEccc----cHHHHHHHHHHhcccccCCCcEEEeCCCChhHHHHHcCCCC
Confidence 34688889999 88888888887665 7899999988533345677754
No 48
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=56.16 E-value=20 Score=32.82 Aligned_cols=49 Identities=27% Similarity=0.392 Sum_probs=34.7
Q ss_pred hhHHHHHHHhcCCCe-EEEecCCcc------cc--ccHHHHHHHHHhCCCcEEEeCch
Q 027789 4 EKADKILSESQESNV-AFLVVGDPF------GA--TTHTDLVVRAKKLGIQVKAVHNA 52 (219)
Q Consensus 4 ~~~~~I~~~a~~~~V-v~L~~GDP~------iy--st~~el~~~l~~~gI~vevVPGV 52 (219)
+.++++++.+++.+| +.|..||-| .+ .++.+.++++.+.||+|-+|||=
T Consensus 27 ~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GN 84 (390)
T COG0420 27 KAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGN 84 (390)
T ss_pred HHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCC
Confidence 456678888887544 567899922 21 23566777777789999999993
No 49
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=54.61 E-value=36 Score=30.47 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=34.6
Q ss_pred HHHHHHhcC--CCeEEEecCCccccccHHHHHHHHHh-CCC-cEEEeCchh
Q 027789 7 DKILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKK-LGI-QVKAVHNAS 53 (219)
Q Consensus 7 ~~I~~~a~~--~~Vv~L~~GDP~iyst~~el~~~l~~-~gI-~vevVPGVS 53 (219)
..+++.+.+ -..+++++|+|++.-...+++..+++ .|+ .+.+.-.-+
T Consensus 49 ~~~i~~~~~~gv~~V~ltGGEPll~~~l~~li~~i~~~~gi~~v~itTNG~ 99 (334)
T TIGR02666 49 ERLVRAFVGLGVRKVRLTGGEPLLRKDLVELVARLAALPGIEDIALTTNGL 99 (334)
T ss_pred HHHHHHHHHCCCCEEEEECccccccCCHHHHHHHHHhcCCCCeEEEEeCch
Confidence 445555543 36678999999999999999998887 578 677764443
No 50
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=54.42 E-value=22 Score=32.11 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=27.0
Q ss_pred HHHHHHHhcC---CCeEEEecCCccccc--cHHHHHHHHHhCC
Q 027789 6 ADKILSESQE---SNVAFLVVGDPFGAT--THTDLVVRAKKLG 43 (219)
Q Consensus 6 ~~~I~~~a~~---~~Vv~L~~GDP~iys--t~~el~~~l~~~g 43 (219)
.+++++++++ -.-+.|++|||++.+ ...++++++++.+
T Consensus 124 ~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~ 166 (321)
T TIGR03822 124 LDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAID 166 (321)
T ss_pred HHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCC
Confidence 3456665552 356889999999975 5668888888754
No 51
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=53.19 E-value=22 Score=31.68 Aligned_cols=106 Identities=17% Similarity=0.231 Sum_probs=59.9
Q ss_pred hHHHHHHHhcCCCeEEEecCCccccccHHHHHHHHHhCCCc-------EE--EeCchhHHHHH--HHh-CCCccc-----
Q 027789 5 KADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQ-------VK--AVHNASVMNAV--GIC-GLQLYR----- 67 (219)
Q Consensus 5 ~~~~I~~~a~~~~Vv~L~~GDP~iyst~~el~~~l~~~gI~-------ve--vVPGVSs~~Aa--a~~-gl~l~~----- 67 (219)
..+++...-+..-|.+++.|||..-++ .+.+..|.+.|.+ +. +--|.++..|. |.. |..+-+
T Consensus 7 ~F~~l~~~~~~a~i~yit~GdP~~e~s-~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~ 85 (265)
T COG0159 7 KFAQLKAENRGALIPYVTAGDPDLETS-LEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELV 85 (265)
T ss_pred HHHHHHHhCCCCeEEEEeCCCCCHHHH-HHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 344444444446899999999998876 5778877776543 32 45688887764 433 444311
Q ss_pred ---C--Cce-EEEeeecccccCCChhHH-HHHHHhcCCCeEEEeeccccCc
Q 027789 68 ---F--GET-VSIPFFTETWRPGSFYEK-IKRNRSLGLHTLCLLDIRVKEP 111 (219)
Q Consensus 68 ---~--g~~-~si~~~~~~~~p~~~~e~-i~~~l~~~~~TlvlLd~~~~~~ 111 (219)
+ +.. =.+.+.+-+..-..-.+. +.+....|.+.+++-|+-.++.
T Consensus 86 ~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~ 136 (265)
T COG0159 86 EEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEES 136 (265)
T ss_pred HHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHH
Confidence 1 111 122222222111111233 4556678889999877766653
No 52
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=51.16 E-value=44 Score=25.90 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=29.0
Q ss_pred CCeEEEecCCccccccHHHHHHHHHhC--CCcEEEeCch
Q 027789 16 SNVAFLVVGDPFGATTHTDLVVRAKKL--GIQVKAVHNA 52 (219)
Q Consensus 16 ~~Vv~L~~GDP~iyst~~el~~~l~~~--gI~vevVPGV 52 (219)
.....+..|||+......++++.+.+. ++.+.+.=+.
T Consensus 45 ~~~i~~~ggep~~~~~~~~~i~~~~~~~~~~~~~i~T~~ 83 (204)
T cd01335 45 VEVVILTGGEPLLYPELAELLRRLKKELPGFEISIETNG 83 (204)
T ss_pred ceEEEEeCCcCCccHhHHHHHHHHHhhCCCceEEEEcCc
Confidence 677888999999999888888888887 6666655443
No 53
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=50.66 E-value=34 Score=26.06 Aligned_cols=39 Identities=31% Similarity=0.410 Sum_probs=25.7
Q ss_pred HHHHHhcC--CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeC
Q 027789 8 KILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVH 50 (219)
Q Consensus 8 ~I~~~a~~--~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVP 50 (219)
.+.+.+.+ .+.+.|.+|| +-+...+.+++++|..|.++-
T Consensus 86 d~~~~~~~~~~d~ivLvSgD----~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 86 DILELAYENPPDTIVLVSGD----SDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp HHHHHG--GG-SEEEEE-------GGGHHHHHHHHHH--EEEEEE
T ss_pred HHHHHhhccCCCEEEEEECc----HHHHHHHHHHHHcCCEEEEEE
Confidence 34555543 5999999999 668889999999999999995
No 54
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=49.58 E-value=43 Score=30.05 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=33.8
Q ss_pred CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHH
Q 027789 16 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVM 55 (219)
Q Consensus 16 ~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~ 55 (219)
..++.+++|+|++.--..++++.++++|+.+.+.-+-+-+
T Consensus 73 ~~~V~i~GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll 112 (318)
T TIGR03470 73 APVVSIPGGEPLLHPEIDEIVRGLVARKKFVYLCTNALLL 112 (318)
T ss_pred CCEEEEeCccccccccHHHHHHHHHHcCCeEEEecCceeh
Confidence 4678889999999999999999999999888887665544
No 55
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=49.38 E-value=27 Score=33.10 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=26.5
Q ss_pred HHHHHHHhcC---CCeEEEecCCcccccc--HHHHHHHHHhC-CCc
Q 027789 6 ADKILSESQE---SNVAFLVVGDPFGATT--HTDLVVRAKKL-GIQ 45 (219)
Q Consensus 6 ~~~I~~~a~~---~~Vv~L~~GDP~iyst--~~el~~~l~~~-gI~ 45 (219)
.++++++.++ -+-++|++|||++.+. ..+++.++++. +|+
T Consensus 143 i~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~ 188 (417)
T TIGR03820 143 ILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVE 188 (417)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCc
Confidence 3455665553 3568999999999887 33445666663 554
No 56
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=49.12 E-value=44 Score=26.78 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=30.4
Q ss_pred hhHHHHHHHhcCCCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCc
Q 027789 4 EKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHN 51 (219)
Q Consensus 4 ~~~~~I~~~a~~~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPG 51 (219)
+..+.|.+....-.-+-+++|+ +.+.-..+++.+++++|+.+.+.-|
T Consensus 50 el~~~I~~~~~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l~Tg 96 (147)
T TIGR02826 50 YLTKTLDKYRSLISCVLFLGGE-WNREALLSLLKIFKEKGLKTCLYTG 96 (147)
T ss_pred HHHHHHHHhCCCCCEEEEechh-cCHHHHHHHHHHHHHCCCCEEEECC
Confidence 3433443332223568889999 7777677888888887777766543
No 57
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=47.49 E-value=36 Score=28.99 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=27.3
Q ss_pred CeEEEecCCccccccH-HHHHHHHHhCCCcEEEe
Q 027789 17 NVAFLVVGDPFGATTH-TDLVVRAKKLGIQVKAV 49 (219)
Q Consensus 17 ~Vv~L~~GDP~iyst~-~el~~~l~~~gI~vevV 49 (219)
.-+-++.|+|+++.-+ .+++.++++.|+.+-+.
T Consensus 40 gGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~le 73 (213)
T PRK10076 40 GGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIE 73 (213)
T ss_pred CEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEE
Confidence 4788999999999886 57788888888887766
No 58
>KOG3517 consensus Transcription factor PAX1/9 [Transcription]
Probab=46.09 E-value=12 Score=33.11 Aligned_cols=40 Identities=23% Similarity=0.143 Sum_probs=32.2
Q ss_pred EecCCccccccHHHHHHHHHhCCC-cEEEeCchhHHHHH--HHhC
Q 027789 21 LVVGDPFGATTHTDLVVRAKKLGI-QVKAVHNASVMNAV--GICG 62 (219)
Q Consensus 21 L~~GDP~iyst~~el~~~l~~~gI-~vevVPGVSs~~Aa--a~~g 62 (219)
||-+||.||. +|+.++|...|| +--=||.|||++-+ .++|
T Consensus 90 ~Kq~DPGIFA--WEIRDRLlsdgiCDk~NvPSVSSISRILRNKiG 132 (334)
T KOG3517|consen 90 LKQRDPGIFA--WEIRDRLLSDGICDKYNVPSVSSISRILRNKIG 132 (334)
T ss_pred hhccCCceee--ehhhhhhhhcccccccCCcchHHHHHHHHhhhc
Confidence 6779999999 999999998884 44568999999875 5544
No 59
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=45.65 E-value=63 Score=27.06 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=34.0
Q ss_pred hhHHHHHHHhcC-CCeEEEecCCcccccc-HH------HHHHHHHhCCCcEEEeCchhH
Q 027789 4 EKADKILSESQE-SNVAFLVVGDPFGATT-HT------DLVVRAKKLGIQVKAVHNASV 54 (219)
Q Consensus 4 ~~~~~I~~~a~~-~~Vv~L~~GDP~iyst-~~------el~~~l~~~gI~vevVPGVSs 54 (219)
+..+.|++.+++ +--..+..||-.=.++ .. +.++.+.+.++++-++||=--
T Consensus 22 ~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 22 AQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 345667777765 4445679999776665 22 345555556899999999654
No 60
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=44.89 E-value=32 Score=29.22 Aligned_cols=32 Identities=19% Similarity=0.065 Sum_probs=25.1
Q ss_pred eEEEecCCccccccHH-HHHHHHHhCCCcEEEe
Q 027789 18 VAFLVVGDPFGATTHT-DLVVRAKKLGIQVKAV 49 (219)
Q Consensus 18 Vv~L~~GDP~iyst~~-el~~~l~~~gI~vevV 49 (219)
.+.++.|+|++.--+. ++++.+++.|+.+-+.
T Consensus 73 ~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~ 105 (246)
T PRK11145 73 GVTASGGEAILQAEFVRDWFRACKKEGIHTCLD 105 (246)
T ss_pred eEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEE
Confidence 4567999999988764 7888888888876554
No 61
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=44.18 E-value=49 Score=28.96 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=27.4
Q ss_pred CeEEEecCCccccccH-HHHHHHHHhCCCcEEEeCc
Q 027789 17 NVAFLVVGDPFGATTH-TDLVVRAKKLGIQVKAVHN 51 (219)
Q Consensus 17 ~Vv~L~~GDP~iyst~-~el~~~l~~~gI~vevVPG 51 (219)
..+.+++|+|++.-.+ .++++++++.|+.+.+.-.
T Consensus 127 ~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~Tn 162 (295)
T TIGR02494 127 GGVTLSGGEPLLQPEFALALLQACHERGIHTAVETS 162 (295)
T ss_pred CcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeCC
Confidence 3567889999999987 4888999988887766533
No 62
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=42.67 E-value=70 Score=28.70 Aligned_cols=47 Identities=23% Similarity=0.238 Sum_probs=33.3
Q ss_pred HHHHHHhcC--CCeEEEecCCccccccHHHHHHHHHhCC-C-cEEEeCchh
Q 027789 7 DKILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKKLG-I-QVKAVHNAS 53 (219)
Q Consensus 7 ~~I~~~a~~--~~Vv~L~~GDP~iyst~~el~~~l~~~g-I-~vevVPGVS 53 (219)
..+++.+.+ -..+++++|+|++.--..++++++++.+ + .+.+.-+-+
T Consensus 51 ~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~~l~~i~itTNG~ 101 (329)
T PRK13361 51 AWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLPGLEELSLTTNGS 101 (329)
T ss_pred HHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCCCCceEEEEeChh
Confidence 445554443 3567889999999999999999998865 4 565554433
No 63
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=42.21 E-value=1.1e+02 Score=24.91 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCcEEEeCchhHHHHH---HHhCCCc
Q 027789 34 DLVVRAKKLGIQVKAVHNASVMNAV---GICGLQL 65 (219)
Q Consensus 34 el~~~l~~~gI~vevVPGVSs~~Aa---a~~gl~l 65 (219)
-++..+.+.|+.+..| |+|+|+.. ++.++.+
T Consensus 25 TilaFi~~WG~RFRLV-GvT~F~~vLt~g~fal~~ 58 (145)
T PF10726_consen 25 TILAFIFKWGIRFRLV-GVTSFMLVLTVGCFALSL 58 (145)
T ss_pred HHHHHHhccCceEEEe-cHHHHHHHHHHHHHHhee
Confidence 3556677899999999 99999873 6666654
No 64
>PRK13057 putative lipid kinase; Reviewed
Probab=42.01 E-value=52 Score=28.77 Aligned_cols=54 Identities=9% Similarity=0.163 Sum_probs=40.2
Q ss_pred HHHHHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHHHHhCCC
Q 027789 7 DKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQ 64 (219)
Q Consensus 7 ~~I~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aaa~~gl~ 64 (219)
.++++.+.. .+++...+|| ||..+.+..+...++++-++|+=|.=.=|=.+|+|
T Consensus 41 ~~~~~~~~~~~d~iiv~GGD----GTv~~v~~~l~~~~~~lgiiP~GT~Ndfar~Lg~~ 95 (287)
T PRK13057 41 SEVIEAYADGVDLVIVGGGD----GTLNAAAPALVETGLPLGILPLGTANDLARTLGIP 95 (287)
T ss_pred HHHHHHHHcCCCEEEEECch----HHHHHHHHHHhcCCCcEEEECCCCccHHHHHcCCC
Confidence 344444444 6899999999 99999999998889999999988763334345665
No 65
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=41.98 E-value=34 Score=31.46 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=29.5
Q ss_pred CCCeEEEecCCccccccHHHHHHHHHhCCCcEEEe
Q 027789 15 ESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAV 49 (219)
Q Consensus 15 ~~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevV 49 (219)
+|+|+.++.+|.....|..++...|.++|.+|.||
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii 37 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLV 37 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEE
Confidence 47888888888888888888888888888888887
No 66
>PRK09213 pur operon repressor; Provisional
Probab=40.90 E-value=1.6e+02 Score=26.18 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=22.8
Q ss_pred CCccccccHHHHHHH-HHhCCCcEEEeC---chhHHHHH-HHhCCCc
Q 027789 24 GDPFGATTHTDLVVR-AKKLGIQVKAVH---NASVMNAV-GICGLQL 65 (219)
Q Consensus 24 GDP~iyst~~el~~~-l~~~gI~vevVP---GVSs~~Aa-a~~gl~l 65 (219)
+||-++....+++.. +...++++-+=| |+.-..++ ..+|.|+
T Consensus 110 ~~P~~l~~i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~ 156 (271)
T PRK09213 110 GNPSILRKIGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPF 156 (271)
T ss_pred CCHHHHHHHHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCE
Confidence 466655555555443 223356654433 44444554 6789885
No 67
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=40.56 E-value=76 Score=26.22 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=34.3
Q ss_pred HHHHHhc--CCCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHH
Q 027789 8 KILSESQ--ESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVM 55 (219)
Q Consensus 8 ~I~~~a~--~~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~ 55 (219)
.+.+.+. ..+.+.|.+|| |-+...++.++++|..+++++..+.+
T Consensus 101 D~~~l~~~~~~D~ivl~SgD----~DF~p~v~~~~~~G~rv~v~~~~~~~ 146 (181)
T COG1432 101 DAMELADKKNVDTIVLFSGD----GDFIPLVEAARDKGKRVEVAGIEPMT 146 (181)
T ss_pred HHHHhhcccCCCEEEEEcCC----ccHHHHHHHHHHcCCEEEEEecCCcC
Confidence 3455555 37999999999 56666899999999999999877633
No 68
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=40.23 E-value=42 Score=30.38 Aligned_cols=36 Identities=22% Similarity=0.142 Sum_probs=24.4
Q ss_pred HHHHHHHhcC---CCeEEEecCCcccccc--HHHHHHHHHh
Q 027789 6 ADKILSESQE---SNVAFLVVGDPFGATT--HTDLVVRAKK 41 (219)
Q Consensus 6 ~~~I~~~a~~---~~Vv~L~~GDP~iyst--~~el~~~l~~ 41 (219)
.+++++++++ -+.+.+++|||+.... ..+++.++..
T Consensus 130 ~~~~i~~i~~~~~i~~VvltGGEPL~~~d~~L~~ll~~l~~ 170 (321)
T TIGR03821 130 WKEALEYIAQHPEINEVILSGGDPLMAKDHRLDWLLNLLEQ 170 (321)
T ss_pred HHHHHHHHHhcCCCCEEEEeCcccccCCchHHHHHHHHHHh
Confidence 3455555552 2557899999998866 6677766665
No 69
>PLN02335 anthranilate synthase
Probab=40.17 E-value=31 Score=29.39 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=32.0
Q ss_pred HHHhcC-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCc
Q 027789 10 LSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHN 51 (219)
Q Consensus 10 ~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPG 51 (219)
+...++ ++|+++..||.+.|. +.++|++.|++++|+|.
T Consensus 12 ~~~~~~~~~ilviD~~dsft~~----i~~~L~~~g~~~~v~~~ 50 (222)
T PLN02335 12 INSSKQNGPIIVIDNYDSFTYN----LCQYMGELGCHFEVYRN 50 (222)
T ss_pred hcccCccCcEEEEECCCCHHHH----HHHHHHHCCCcEEEEEC
Confidence 344455 899999999988877 88889999999999997
No 70
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=39.03 E-value=49 Score=22.16 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=24.4
Q ss_pred HHHHHHHhcCC--CeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchh
Q 027789 6 ADKILSESQES--NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNAS 53 (219)
Q Consensus 6 ~~~I~~~a~~~--~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVS 53 (219)
.+++++.|+++ +.+-++ |-.-+..+.+..+.+++.|+ .++||+-
T Consensus 17 ~~~~~~~a~~~g~~~v~iT--Dh~~~~~~~~~~~~~~~~gi--~~i~G~E 62 (67)
T smart00481 17 PEELVKRAKELGLKAIAIT--DHGNLFGAVEFYKAAKKAGI--KPIIGLE 62 (67)
T ss_pred HHHHHHHHHHcCCCEEEEe--eCCcccCHHHHHHHHHHcCC--eEEEEEE
Confidence 45677777652 433333 32233334566666666664 5688874
No 71
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=38.29 E-value=63 Score=30.40 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=33.7
Q ss_pred hhhHHHHHHHhc----C-CCeEEEecCCccccccHHHHHHHHHhCCCcEEE
Q 027789 3 EEKADKILSESQ----E-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKA 48 (219)
Q Consensus 3 e~~~~~I~~~a~----~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vev 48 (219)
|+..+++.+... . .-|-+.-+|||+.+.-..++++++++.|+.+.+
T Consensus 57 ~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI 107 (404)
T TIGR03278 57 QVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHL 107 (404)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEE
Confidence 444455544332 2 456666667999999999999999999999877
No 72
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=37.74 E-value=1.3e+02 Score=22.75 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=31.7
Q ss_pred CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCch
Q 027789 16 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNA 52 (219)
Q Consensus 16 ~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGV 52 (219)
-+|+.+-.|.-..+- ..++++.++++||.+|+.+-.
T Consensus 53 peiliiGTG~~~~~~-~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 53 PEVILLGTGERQRFP-PPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred CCEEEEecCCCCCcC-CHHHHHHHHHcCCeEEEECHH
Confidence 579999999998887 688999999999999999744
No 73
>PRK00861 putative lipid kinase; Reviewed
Probab=36.11 E-value=1.2e+02 Score=26.58 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=41.8
Q ss_pred HHHHHHHhc-C-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHHHHhCCCc
Q 027789 6 ADKILSESQ-E-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQL 65 (219)
Q Consensus 6 ~~~I~~~a~-~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aaa~~gl~l 65 (219)
+.++.+.+. + .+++...+|| ||..+.+..+...++++-++|+=|.=.=|-.+|+|.
T Consensus 46 a~~~a~~~~~~~~d~vv~~GGD----GTl~evv~~l~~~~~~lgviP~GTgNdfAr~lgi~~ 103 (300)
T PRK00861 46 ADQLAQEAIERGAELIIASGGD----GTLSAVAGALIGTDIPLGIIPRGTANAFAAALGIPD 103 (300)
T ss_pred HHHHHHHHHhcCCCEEEEECCh----HHHHHHHHHHhcCCCcEEEEcCCchhHHHHHcCCCC
Confidence 345555443 3 5899999999 888999999988889999999987643344567653
No 74
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=35.81 E-value=90 Score=28.80 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=28.6
Q ss_pred CCeEEEecCCccccccHHHHHHHHHhC-CCc-EEEe-Cch
Q 027789 16 SNVAFLVVGDPFGATTHTDLVVRAKKL-GIQ-VKAV-HNA 52 (219)
Q Consensus 16 ~~Vv~L~~GDP~iyst~~el~~~l~~~-gI~-vevV-PGV 52 (219)
-..+++++|.|++.--..++++++++. |+. +.+. .|.
T Consensus 107 v~~I~~tGGEPllr~dl~eli~~l~~~~gi~~i~itTNG~ 146 (373)
T PLN02951 107 VDKIRLTGGEPTLRKDIEDICLQLSSLKGLKTLAMTTNGI 146 (373)
T ss_pred CCEEEEECCCCcchhhHHHHHHHHHhcCCCceEEEeeCcc
Confidence 356789999999998888999988885 875 5554 353
No 75
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=35.15 E-value=1e+02 Score=23.65 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=30.6
Q ss_pred HHHHhcC--CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeC
Q 027789 9 ILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVH 50 (219)
Q Consensus 9 I~~~a~~--~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVP 50 (219)
+.+.+.. -+++.|.+||- -+...+..++++|..|.++.
T Consensus 91 ~~~~~~~~~~d~ivLvSgD~----Df~~~i~~lr~~G~~V~v~~ 130 (149)
T cd06167 91 ALELAYKRRIDTIVLVSGDS----DFVPLVERLRELGKRVIVVG 130 (149)
T ss_pred HHHHhhhcCCCEEEEEECCc----cHHHHHHHHHHcCCEEEEEc
Confidence 4555554 58999999995 67789999999999999884
No 76
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=34.48 E-value=93 Score=24.76 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=23.7
Q ss_pred HHHHHHHhcC-C--CeEEEecCCccccc---cHHHHHHHHHhC
Q 027789 6 ADKILSESQE-S--NVAFLVVGDPFGAT---THTDLVVRAKKL 42 (219)
Q Consensus 6 ~~~I~~~a~~-~--~Vv~L~~GDP~iys---t~~el~~~l~~~ 42 (219)
.++|++.+++ + .-+-+++|+|++.. ...+++.++++.
T Consensus 51 ~~~i~~~l~~~~~~~gVt~sGGEPllq~~~~~l~~ll~~~k~~ 93 (154)
T TIGR02491 51 EKEIIRDLNDNPLIDGLTLSGGDPLYPRNVEELIELVKKIKAE 93 (154)
T ss_pred HHHHHHHHHhcCCcCeEEEeChhhCCCCCHHHHHHHHHHHHHh
Confidence 4556666654 2 45677999999965 444555566653
No 77
>PRK11914 diacylglycerol kinase; Reviewed
Probab=33.72 E-value=1e+02 Score=27.15 Aligned_cols=56 Identities=11% Similarity=0.153 Sum_probs=40.8
Q ss_pred HHHHHHHhc-C-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHHHHhCCCc
Q 027789 6 ADKILSESQ-E-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQL 65 (219)
Q Consensus 6 ~~~I~~~a~-~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aaa~~gl~l 65 (219)
+.++.+.+. + -+++...+|| ||..+.+..+...++++-+||+=|.=.-|-.+|+|.
T Consensus 53 ~~~~a~~~~~~~~d~vvv~GGD----GTi~evv~~l~~~~~~lgiiP~GT~NdfAr~lg~~~ 110 (306)
T PRK11914 53 ARHLVAAALAKGTDALVVVGGD----GVISNALQVLAGTDIPLGIIPAGTGNDHAREFGIPT 110 (306)
T ss_pred HHHHHHHHHhcCCCEEEEECCc----hHHHHHhHHhccCCCcEEEEeCCCcchhHHHcCCCC
Confidence 445555443 3 4889999999 888889988888889999999887533234566653
No 78
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=33.17 E-value=1e+02 Score=28.04 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=37.6
Q ss_pred HHHHHHhcC-CC--eEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhC
Q 027789 7 DKILSESQE-SN--VAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICG 62 (219)
Q Consensus 7 ~~I~~~a~~-~~--Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~g 62 (219)
.+++..|++ .+ .|+++.+=|+.-| ......|++.||++.+|+=. +++++ ....
T Consensus 133 ~~~l~~A~~~~k~~~V~VtESRP~~eG--~~~ak~L~~~gI~~~~I~Ds-a~~~~~~~vd 189 (301)
T COG1184 133 LEVLKTAADRGKRFKVIVTESRPRGEG--RIMAKELRQSGIPVTVIVDS-AVGAFMSRVD 189 (301)
T ss_pred HHHHHHhhhcCCceEEEEEcCCCcchH--HHHHHHHHHcCCceEEEech-HHHHHHHhCC
Confidence 345555554 33 8899999999987 55888899999999999754 33333 5444
No 79
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=32.88 E-value=50 Score=28.46 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=30.4
Q ss_pred CeEEEecCCccccccHHHHHHHHHhCC---CcEE------EeCchhHHHHH
Q 027789 17 NVAFLVVGDPFGATTHTDLVVRAKKLG---IQVK------AVHNASVMNAV 58 (219)
Q Consensus 17 ~Vv~L~~GDP~iyst~~el~~~l~~~g---I~ve------vVPGVSs~~Aa 58 (219)
-+++++.|||.. .+..+.+..+.+.| +++. +.-|.....|.
T Consensus 2 li~y~~~G~P~~-~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~ 51 (242)
T cd04724 2 LIPYITAGDPDL-ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAAS 51 (242)
T ss_pred cEEEEeCCCCCH-HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHH
Confidence 378999999998 66678888888876 4555 55677766553
No 80
>PRK05637 anthranilate synthase component II; Provisional
Probab=32.75 E-value=42 Score=28.38 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=28.8
Q ss_pred CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCch
Q 027789 16 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNA 52 (219)
Q Consensus 16 ~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGV 52 (219)
++|+++-.||-+.|+ +.+.+++.|+.++|+|.=
T Consensus 2 ~~il~iD~~dsf~~n----l~~~l~~~g~~~~v~~~~ 34 (208)
T PRK05637 2 THVVLIDNHDSFVYN----LVDAFAVAGYKCTVFRNT 34 (208)
T ss_pred CEEEEEECCcCHHHH----HHHHHHHCCCcEEEEeCC
Confidence 468999999999888 788888899999999974
No 81
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=32.70 E-value=74 Score=28.83 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=25.9
Q ss_pred HHHHHHHhcC---CCeEEEecCCcccccc--HHHHHHHHHh
Q 027789 6 ADKILSESQE---SNVAFLVVGDPFGATT--HTDLVVRAKK 41 (219)
Q Consensus 6 ~~~I~~~a~~---~~Vv~L~~GDP~iyst--~~el~~~l~~ 41 (219)
.++++++++. -.-+.+++|||++... ..+++.++++
T Consensus 147 ~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~ 187 (331)
T TIGR00238 147 WQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEE 187 (331)
T ss_pred HHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHh
Confidence 4556666642 3568899999999886 6677777776
No 82
>PRK12361 hypothetical protein; Provisional
Probab=31.74 E-value=1.3e+02 Score=29.09 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=42.0
Q ss_pred HHHHHHHhc-C-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH-HHhCCC
Q 027789 6 ADKILSESQ-E-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQ 64 (219)
Q Consensus 6 ~~~I~~~a~-~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa-a~~gl~ 64 (219)
+.++.+.+. + .+++...+|| ||..+.+..+...++++-+||+=|.=.=| +..|++
T Consensus 286 a~~la~~~~~~~~d~Viv~GGD----GTl~ev~~~l~~~~~~lgiiP~GTgNdfAr~L~gi~ 343 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGD----GTVTEVASELVNTDITLGIIPLGTANALSHALFGLG 343 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCC----cHHHHHHHHHhcCCCCEEEecCCchhHHHHHhcCCC
Confidence 455555554 3 5899999999 99999999998889999999998864435 443665
No 83
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=31.05 E-value=1.3e+02 Score=28.79 Aligned_cols=54 Identities=13% Similarity=0.107 Sum_probs=43.6
Q ss_pred hhHHHHHHHhcC--CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHH
Q 027789 4 EKADKILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNA 57 (219)
Q Consensus 4 ~~~~~I~~~a~~--~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~A 57 (219)
+...+|.+.+++ =+.|.|++.=|..-=+..-+..++.+.||++-.|-.++.++-
T Consensus 323 ~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~~ 378 (431)
T TIGR01917 323 QFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIAL 378 (431)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHHH
Confidence 445678888885 499999999888877778888888999999999977776543
No 84
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=30.93 E-value=99 Score=28.00 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=39.4
Q ss_pred C-CCeEEEecCCccccccHHHHHHHHHhCC-CcEEEeCchhHHHHHHHhC
Q 027789 15 E-SNVAFLVVGDPFGATTHTDLVVRAKKLG-IQVKAVHNASVMNAVGICG 62 (219)
Q Consensus 15 ~-~~Vv~L~~GDP~iyst~~el~~~l~~~g-I~vevVPGVSs~~Aaa~~g 62 (219)
+ ..|++-=.|-|++|-...++++.+++.| +++-+|-+-|---....+.
T Consensus 79 ~pd~vtis~~GEPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L~ 128 (296)
T COG0731 79 EPDHVTISLSGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEELK 128 (296)
T ss_pred CCCEEEEeCCCCcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHhc
Confidence 5 6899999999999999999999999999 7988888777633334333
No 85
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=30.82 E-value=41 Score=25.47 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=22.0
Q ss_pred eEEEecCCcccc----------ccHHHHHHHHHhCCCcEEEeCchhHHHH
Q 027789 18 VAFLVVGDPFGA----------TTHTDLVVRAKKLGIQVKAVHNASVMNA 57 (219)
Q Consensus 18 Vv~L~~GDP~iy----------st~~el~~~l~~~gI~vevVPGVSs~~A 57 (219)
-++..+|.|.+. +.+.++...+++.+|+.-|| |.-+..+
T Consensus 27 ~v~~aPGN~G~~~~~~~~~~~~~d~~~l~~~a~~~~idlvvv-GPE~pL~ 75 (100)
T PF02844_consen 27 EVYVAPGNPGTAELGKNVPIDITDPEELADFAKENKIDLVVV-GPEAPLV 75 (100)
T ss_dssp EEEEEE--TTGGGTSEEE-S-TT-HHHHHHHHHHTTESEEEE-SSHHHHH
T ss_pred EEEEeCCCHHHHhhceecCCCCCCHHHHHHHHHHcCCCEEEE-CChHHHH
Confidence 355566766553 33556677777777777666 6555543
No 86
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=30.70 E-value=1.7e+02 Score=26.19 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=44.8
Q ss_pred HHHHHHHhc-C-CCeEEEecCCccccccHHHHHHHHHhCCCc-EEEeCchhHHHHHHHhCCCcc
Q 027789 6 ADKILSESQ-E-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQ-VKAVHNASVMNAVGICGLQLY 66 (219)
Q Consensus 6 ~~~I~~~a~-~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~-vevVPGVSs~~Aaa~~gl~l~ 66 (219)
+.++++.+. + -+.++.-+|| ||..+....|.+.+.. +-+||+=|.=.=|=.+|+|.-
T Consensus 47 a~~~a~~a~~~~~D~via~GGD----GTv~evingl~~~~~~~LgilP~GT~NdfAr~Lgip~~ 106 (301)
T COG1597 47 AIEIAREAAVEGYDTVIAAGGD----GTVNEVANGLAGTDDPPLGILPGGTANDFARALGIPLD 106 (301)
T ss_pred HHHHHHHHHhcCCCEEEEecCc----chHHHHHHHHhcCCCCceEEecCCchHHHHHHcCCCch
Confidence 455666655 3 6999999999 9999999999999888 999999976322445788773
No 87
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=28.28 E-value=2.3e+02 Score=21.33 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=30.1
Q ss_pred CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCch
Q 027789 16 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNA 52 (219)
Q Consensus 16 ~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGV 52 (219)
-+++.+=.|.-..+ -+-++++.++++||.+|+.+-.
T Consensus 53 peiliiGTG~~~~~-~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAF-LPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCc-CCHHHHHHHHHcCCeEEEeCcH
Confidence 57999999997766 3578889999999999999754
No 88
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=27.81 E-value=1.7e+02 Score=25.96 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=27.4
Q ss_pred CCeEEEecCCccccccHHHHHHHHHhC-C-CcEEEeCc
Q 027789 16 SNVAFLVVGDPFGATTHTDLVVRAKKL-G-IQVKAVHN 51 (219)
Q Consensus 16 ~~Vv~L~~GDP~iyst~~el~~~l~~~-g-I~vevVPG 51 (219)
-..+.+++|+|++.-...++++.+++. | ..+.+.-.
T Consensus 66 i~~I~~tGGEPll~~~l~~li~~i~~~~~~~~i~itTN 103 (331)
T PRK00164 66 VRKVRLTGGEPLLRKDLEDIIAALAALPGIRDLALTTN 103 (331)
T ss_pred CCEEEEECCCCcCccCHHHHHHHHHhcCCCceEEEEcC
Confidence 355777999999999899999998876 3 45665544
No 89
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=27.52 E-value=1.2e+02 Score=22.75 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=26.6
Q ss_pred CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCch
Q 027789 16 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNA 52 (219)
Q Consensus 16 ~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGV 52 (219)
-++.++=.|.. ..--..++.++++++||.+|+.+--
T Consensus 54 pe~liiGtG~~-~~~~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 54 PEVLIIGTGKR-QLFLPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp -SEEEEEETTS--SECTHHHHHHHHTTT-EEEEE-HH
T ss_pred CcEEEEccCCc-cccCCHHHHHHHHHcCCeEEEECHH
Confidence 48999988988 4444578999999999999999633
No 90
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=27.38 E-value=95 Score=25.54 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=28.0
Q ss_pred CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeC
Q 027789 16 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVH 50 (219)
Q Consensus 16 ~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVP 50 (219)
-++..|.+|| |=|..++.+|++.|..|.++-
T Consensus 106 iD~~vLvSgD----~DF~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 106 IDAVALVTRD----ADFLPVINKAKENGKETIVIG 136 (160)
T ss_pred CCEEEEEecc----HhHHHHHHHHHHCCCEEEEEe
Confidence 5999999999 778889999999999999984
No 91
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=26.90 E-value=1.5e+02 Score=28.22 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=43.6
Q ss_pred hhHHHHHHHhcC--CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHH
Q 027789 4 EKADKILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNA 57 (219)
Q Consensus 4 ~~~~~I~~~a~~--~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~A 57 (219)
+...+|.+.+++ =+.|.|++.=|..-=+..-+..++.+.||++..|-.++.++-
T Consensus 323 ~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~~~pis~ 378 (431)
T TIGR01918 323 QFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCTVIPIAL 378 (431)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeecccHhh
Confidence 445678888885 499999999888877778888889999999999988776554
No 92
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=26.77 E-value=1.1e+02 Score=24.61 Aligned_cols=40 Identities=10% Similarity=0.176 Sum_probs=30.9
Q ss_pred HHHHHHhcC-CCeEEE-ecCCccccccHHHHHHHHHhCCCcEEEeC
Q 027789 7 DKILSESQE-SNVAFL-VVGDPFGATTHTDLVVRAKKLGIQVKAVH 50 (219)
Q Consensus 7 ~~I~~~a~~-~~Vv~L-~~GDP~iyst~~el~~~l~~~gI~vevVP 50 (219)
+.|.+.+++ |++|.+ -+.||.=.| ...+.+|.++| ++|||
T Consensus 7 ~~i~~iL~~~K~IAvVG~S~~P~r~s--y~V~kyL~~~G--Y~ViP 48 (140)
T COG1832 7 EDIAEILKSAKTIAVVGASDKPDRPS--YRVAKYLQQKG--YRVIP 48 (140)
T ss_pred HHHHHHHHhCceEEEEecCCCCCccH--HHHHHHHHHCC--CEEEe
Confidence 567777776 888887 678888777 67888999999 55555
No 93
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=26.61 E-value=52 Score=26.03 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=30.9
Q ss_pred HHHHHHhcCCCeEEEecCCccccccHHH------HHHHHHhCCCcEEEeCchhHHHHH
Q 027789 7 DKILSESQESNVAFLVVGDPFGATTHTD------LVVRAKKLGIQVKAVHNASVMNAV 58 (219)
Q Consensus 7 ~~I~~~a~~~~Vv~L~~GDP~iyst~~e------l~~~l~~~gI~vevVPGVSs~~Aa 58 (219)
+.+.+..++-++.++.+|||+-+-.... .+.++-+.| -++=|.|+..++
T Consensus 27 ~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G---~vi~G~SAGA~i 81 (154)
T PF03575_consen 27 ADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKG---GVIIGTSAGAMI 81 (154)
T ss_dssp HHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTT---SEEEEETHHHHC
T ss_pred HHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCC---CEEEEEChHHhh
Confidence 4667777778999999999998765533 333344467 344499887765
No 94
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=26.42 E-value=1.7e+02 Score=23.67 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=30.8
Q ss_pred hHHHHHHHhcCCCe-EEEecCCcccccc-----HHHHHHHHHh---CCCcEEEeCchhH
Q 027789 5 KADKILSESQESNV-AFLVVGDPFGATT-----HTDLVVRAKK---LGIQVKAVHNASV 54 (219)
Q Consensus 5 ~~~~I~~~a~~~~V-v~L~~GDP~iyst-----~~el~~~l~~---~gI~vevVPGVSs 54 (219)
..+++++.+++.++ ..+..||-+=..+ .....+.+.+ .++++-+++|=--
T Consensus 29 ~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~GNHD 87 (223)
T cd00840 29 AFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVFIIAGNHD 87 (223)
T ss_pred HHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEecCCCC
Confidence 45667777776433 4778999765433 1223333333 3899999998544
No 95
>PF00292 PAX: 'Paired box' domain; InterPro: IPR001523 The paired box is a conserved 124 amino acid N-terminal domain of unknown function that usually, but not always, precedes a homeobox domain (see IPR001356 from INTERPRO) [, ]. Paired box genes are expressed in alternate segments of the developing fruit fly, the observed grouping of segments into pairs depending on the position of the segment in the segmental array, and not on the identity of the segment as in the case of homeotic genes. This implies that the genes affect different processes from those altered by homeotic genes.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 6PAX_A 1K78_E 1MDM_A 2K27_A 1PDN_C.
Probab=26.02 E-value=33 Score=27.11 Aligned_cols=32 Identities=19% Similarity=0.083 Sum_probs=21.9
Q ss_pred cCCccccccHHHHHHHHHhCCCcE-EEeCchhHHH
Q 027789 23 VGDPFGATTHTDLVVRAKKLGIQV-KAVHNASVMN 56 (219)
Q Consensus 23 ~GDP~iyst~~el~~~l~~~gI~v-evVPGVSs~~ 56 (219)
.=.|.+|+ +|+.++|.+.||-. ..+|-|||++
T Consensus 89 ~enP~ifa--wEiR~~L~~~gvc~~~~~PsvssIn 121 (125)
T PF00292_consen 89 RENPTIFA--WEIRDRLIADGVCDRSNVPSVSSIN 121 (125)
T ss_dssp HH-TTS-H--HHHHHHHHHTTSS-TTTS--HHHHH
T ss_pred hcCCCcch--HHHHHHHHHcCCCCCCCCCCHHHHH
Confidence 34699999 89999999988644 6788888876
No 96
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=26.01 E-value=1.1e+02 Score=23.35 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=32.5
Q ss_pred CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH
Q 027789 16 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV 58 (219)
Q Consensus 16 ~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa 58 (219)
|+|++...|=...+- ..+++++|++.|+++.+|---++..-.
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 467778888777777 689999999999999999877776544
No 97
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=25.85 E-value=2e+02 Score=24.66 Aligned_cols=51 Identities=10% Similarity=0.099 Sum_probs=34.9
Q ss_pred hHHHHHHHhcC-CCeEEEecCCcccccc----HHHHHHHHHhCCCcEEEeCchhHH
Q 027789 5 KADKILSESQE-SNVAFLVVGDPFGATT----HTDLVVRAKKLGIQVKAVHNASVM 55 (219)
Q Consensus 5 ~~~~I~~~a~~-~~Vv~L~~GDP~iyst----~~el~~~l~~~gI~vevVPGVSs~ 55 (219)
..+.+++.+++ +-=+.+..||-.-++. +...++.+.+.++++-.|||=.-.
T Consensus 19 ~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~~pv~~V~GNhD~ 74 (224)
T cd07388 19 ALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEAHLPTFYVPGPQDA 74 (224)
T ss_pred HHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCceEEEcCCCCh
Confidence 45667776654 3225678999888774 234456666778999999997654
No 98
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=25.82 E-value=1.1e+02 Score=23.05 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=30.1
Q ss_pred CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhH
Q 027789 16 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 54 (219)
Q Consensus 16 ~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs 54 (219)
+.+++++-|.|.-.....+.+..+++.|+++-+| |+.+
T Consensus 105 ~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i-~~g~ 142 (161)
T cd01450 105 KVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVV-GVGP 142 (161)
T ss_pred eEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEE-eccc
Confidence 4688889998877666778888899888888888 5553
No 99
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=25.04 E-value=2.4e+02 Score=24.91 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=22.9
Q ss_pred CeEEEecCCccccccHHHHHHHHHhCCCcEEEeCch
Q 027789 17 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNA 52 (219)
Q Consensus 17 ~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGV 52 (219)
.-+++..+-|..-| ..+..+|.+.||+|.+||--
T Consensus 110 ~~V~v~ESrP~~eG--~~~a~~L~~~GI~vtli~Ds 143 (253)
T PRK06372 110 KSVYILESRPMLEG--IDMAKLLVKSGIDVVLLTDA 143 (253)
T ss_pred CEEEEecCCCchHH--HHHHHHHHHCCCCEEEEehh
Confidence 45667777777666 35677777777777777644
No 100
>PRK13059 putative lipid kinase; Reviewed
Probab=25.04 E-value=2.9e+02 Score=24.25 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=36.5
Q ss_pred HHHhcC-CCeEEEecCCccccccHHHHHHHHHhC--CCcEEEeCchhHHHHHHHhCCC
Q 027789 10 LSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKL--GIQVKAVHNASVMNAVGICGLQ 64 (219)
Q Consensus 10 ~~~a~~-~~Vv~L~~GDP~iyst~~el~~~l~~~--gI~vevVPGVSs~~Aaa~~gl~ 64 (219)
.+.+.+ .+++...+|| ||..+.+..+.+. +++.-+||.=|.=.-|-.+|+|
T Consensus 50 ~~~~~~~~d~vi~~GGD----GTv~evv~gl~~~~~~~~lgviP~GTgNdfAr~lgi~ 103 (295)
T PRK13059 50 FKDIDESYKYILIAGGD----GTVDNVVNAMKKLNIDLPIGILPVGTANDFAKFLGMP 103 (295)
T ss_pred HHHhhcCCCEEEEECCc----cHHHHHHHHHHhcCCCCcEEEECCCCHhHHHHHhCCC
Confidence 334444 5889999999 8888888888754 5889999987653334445665
No 101
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=24.84 E-value=1e+02 Score=23.18 Aligned_cols=32 Identities=9% Similarity=0.252 Sum_probs=24.5
Q ss_pred CCeEEEecCCccccccHHHHHHHHHhCCCcEEEe
Q 027789 16 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAV 49 (219)
Q Consensus 16 ~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevV 49 (219)
++|++++.|- ......+-.+.|++.||++.++
T Consensus 10 ~di~iia~G~--~~~~al~A~~~L~~~Gi~~~vi 41 (124)
T PF02780_consen 10 ADITIIAYGS--MVEEALEAAEELEEEGIKAGVI 41 (124)
T ss_dssp SSEEEEEETT--HHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEeehH--HHHHHHHHHHHHHHcCCceeEE
Confidence 7888888887 3455566777788888888887
No 102
>PRK09453 phosphodiesterase; Provisional
Probab=24.79 E-value=2.2e+02 Score=22.85 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=32.1
Q ss_pred HHHHHHHhcC-CCeEEEecCCcccccc---------HHHHHHHHHhCCCcEEEeCchhH
Q 027789 6 ADKILSESQE-SNVAFLVVGDPFGATT---------HTDLVVRAKKLGIQVKAVHNASV 54 (219)
Q Consensus 6 ~~~I~~~a~~-~~Vv~L~~GDP~iyst---------~~el~~~l~~~gI~vevVPGVSs 54 (219)
.+++.+.+++ +-=..+..||-.-++. -.+.++.+++.+.++-+|+|=--
T Consensus 16 ~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNhD 74 (182)
T PRK09453 16 TEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNCD 74 (182)
T ss_pred HHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccCCc
Confidence 4566666654 3335678899543321 24567778888889999999754
No 103
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=24.36 E-value=2.7e+02 Score=21.33 Aligned_cols=49 Identities=22% Similarity=0.204 Sum_probs=34.8
Q ss_pred CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHHHHhCCCcccC
Q 027789 16 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRF 68 (219)
Q Consensus 16 ~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aaa~~gl~l~~~ 68 (219)
-+++++-.|.-..+=. .++.++++++||.+|+.+- ..|+.-+++=+.+.
T Consensus 55 peiliiGtG~~~~~~~-~~~~~~l~~~gi~vevm~T---~~AcrtyN~L~~Eg 103 (114)
T cd05125 55 PEILVIGTGRKSRPLS-PELRKYFKKLGIAVEVVDT---RNACATFNFLAEEG 103 (114)
T ss_pred CCEEEEccCCCCCcCC-HHHHHHHHHcCCEEEEECH---HHHHHHHHHHHhCC
Confidence 4799999999865543 5788899999999999963 33445555544443
No 104
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=23.94 E-value=36 Score=23.84 Aligned_cols=38 Identities=24% Similarity=0.124 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHhCCCcEEEeCchhHHHHH--HHhCCCcc
Q 027789 29 ATTHTDLVVRAKKLGIQVKAVHNASVMNAV--GICGLQLY 66 (219)
Q Consensus 29 yst~~el~~~l~~~gI~vevVPGVSs~~Aa--a~~gl~l~ 66 (219)
|+|.+++.++|-++||++..=|.|..-... ...|+++.
T Consensus 1 f~~ATdlAD~LVr~GipFR~AH~iVg~~V~~a~~~~~~l~ 40 (70)
T PF14698_consen 1 FSTATDLADYLVRKGIPFREAHHIVGRLVRLAEEEGKPLS 40 (70)
T ss_dssp TGGHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTTS-GG
T ss_pred CccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCChh
Confidence 788899999999999999999999887653 56777765
No 105
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=23.27 E-value=90 Score=24.96 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCcEEEeCchhHHHH--H-HHhCCC
Q 027789 32 HTDLVVRAKKLGIQVKAVHNASVMNA--V-GICGLQ 64 (219)
Q Consensus 32 ~~el~~~l~~~gI~vevVPGVSs~~A--a-a~~gl~ 64 (219)
|.-.+++|.++|+.+..|-|+|+.+- + -++|.+
T Consensus 13 ~~Gvl~aL~e~gi~~d~v~GtSaGAi~aa~~a~g~~ 48 (172)
T cd07198 13 HVGVAKALRERGPLIDIIAGTSAGAIVAALLASGRD 48 (172)
T ss_pred HHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCC
Confidence 45578889999999999999998643 4 344443
No 106
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=23.03 E-value=1.9e+02 Score=26.40 Aligned_cols=46 Identities=15% Similarity=0.351 Sum_probs=36.1
Q ss_pred hHHHHHHHhcCCCeEEEecCCccccccHHHHHHHHHhC-CCc-EEEeCch
Q 027789 5 KADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKL-GIQ-VKAVHNA 52 (219)
Q Consensus 5 ~~~~I~~~a~~~~Vv~L~~GDP~iyst~~el~~~l~~~-gI~-vevVPGV 52 (219)
...++++.|+++.+|.+..=+|..+. .++-++|+++ |++ +.|||+-
T Consensus 42 ~v~rlL~~Ar~~GiV~I~i~~~~~~~--~~Le~~L~~~fgL~~a~VVp~~ 89 (321)
T COG2390 42 TVSRLLAKAREEGIVKISINSPVEGC--LELEQQLKERFGLKEAIVVPSD 89 (321)
T ss_pred HHHHHHHHHHHCCeEEEEeCCCCcch--HHHHHHHHHhcCCCeEEEEcCC
Confidence 35678889998889999888888877 6777788875 754 8899963
No 107
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=23.03 E-value=1.6e+02 Score=27.38 Aligned_cols=48 Identities=15% Similarity=0.112 Sum_probs=30.9
Q ss_pred hHHHHHHHhcC--CCeEEEecCCcccccc--HHHHHHHHHhCCCcEEEeCchh
Q 027789 5 KADKILSESQE--SNVAFLVVGDPFGATT--HTDLVVRAKKLGIQVKAVHNAS 53 (219)
Q Consensus 5 ~~~~I~~~a~~--~~Vv~L~~GDP~iyst--~~el~~~l~~~gI~vevVPGVS 53 (219)
..+++-+.+++ .+.+++ .||+++... ...+...|++.||++.+..|+.
T Consensus 36 ~~~~l~~~~~~~g~~~~lv-v~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~ 87 (395)
T PRK15454 36 AVSSCGQQAQTRGLKHLFV-MADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPV 87 (395)
T ss_pred HHHHHHHHHHhcCCCEEEE-EcCcchhhCccHHHHHHHHHHcCCeEEEECCCC
Confidence 34555555554 355444 467777543 5667777888899998876664
No 108
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=22.63 E-value=1.3e+02 Score=27.63 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=37.2
Q ss_pred CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH
Q 027789 16 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV 58 (219)
Q Consensus 16 ~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa 58 (219)
++.+.+-.|--+..-.|.=.++.|.++|+...+|-|+|+.+.+
T Consensus 67 G~~aLvlsGGg~~g~~h~GVlkaL~e~gl~p~~i~GsSaGAiv 109 (323)
T cd07231 67 GRTALLLSGGAALGTFHVGVVRTLVEHQLLPRVIAGSSVGSIV 109 (323)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHHcCCCCCEEEEECHHHHH
Confidence 6888888888777788888999999999999999999987653
No 109
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=22.25 E-value=1.6e+02 Score=26.55 Aligned_cols=44 Identities=11% Similarity=0.295 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCCeEEEecCCccccccHHHHHHHHHhC-CCc-EEEeCc
Q 027789 6 ADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKL-GIQ-VKAVHN 51 (219)
Q Consensus 6 ~~~I~~~a~~~~Vv~L~~GDP~iyst~~el~~~l~~~-gI~-vevVPG 51 (219)
..++++.|++.-+|..+.-||. ....++-++|+++ |+. +.|||.
T Consensus 46 VsRlL~~Ar~~GiV~I~I~~~~--~~~~~Le~~L~~~fgLk~~iVvp~ 91 (318)
T PRK15418 46 VSRLLEKGRQSGIIRVQINSRF--EGCLELENALRQHFSLQHIRVLPA 91 (318)
T ss_pred HHHHHHHHHHcCcEEEEEeCCC--ccHHHHHHHHHHHhCCCEEEEEeC
Confidence 3568889998889999999995 5567777788874 866 778886
No 110
>PRK13337 putative lipid kinase; Reviewed
Probab=21.63 E-value=3.7e+02 Score=23.60 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=38.6
Q ss_pred HHHHHHHhc-C-CCeEEEecCCccccccHHHHHHHHHhC--CCcEEEeCchhHHHHHHHhCCC
Q 027789 6 ADKILSESQ-E-SNVAFLVVGDPFGATTHTDLVVRAKKL--GIQVKAVHNASVMNAVGICGLQ 64 (219)
Q Consensus 6 ~~~I~~~a~-~-~~Vv~L~~GDP~iyst~~el~~~l~~~--gI~vevVPGVSs~~Aaa~~gl~ 64 (219)
+.++.+.+. + .+++...+|| ||..+.+..+... ..++-++|+=|.=.-|-.+|+|
T Consensus 46 a~~~a~~~~~~~~d~vvv~GGD----GTl~~vv~gl~~~~~~~~lgiiP~GT~NdfAr~lgi~ 104 (304)
T PRK13337 46 ATLAAERAVERKFDLVIAAGGD----GTLNEVVNGIAEKENRPKLGIIPVGTTNDFARALHVP 104 (304)
T ss_pred HHHHHHHHHhcCCCEEEEEcCC----CHHHHHHHHHhhCCCCCcEEEECCcCHhHHHHHcCCC
Confidence 344554443 3 5899999999 8888888887754 5789999988763334445665
No 111
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=21.50 E-value=2.7e+02 Score=19.74 Aligned_cols=17 Identities=6% Similarity=-0.011 Sum_probs=12.4
Q ss_pred CCCCeEEEEEecCCCCe
Q 027789 151 NEDTLCVGFARLGSEDQ 167 (219)
Q Consensus 151 ~~d~~vvvv~r~g~~de 167 (219)
+++.++++.++.|.-..
T Consensus 59 ~~~~~ivvyC~~G~rs~ 75 (101)
T cd01518 59 LKGKKVLMYCTGGIRCE 75 (101)
T ss_pred cCCCEEEEECCCchhHH
Confidence 56788888888775544
No 112
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=21.40 E-value=1.4e+02 Score=26.97 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=39.3
Q ss_pred HHHHhc-C-CCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHHHH
Q 027789 9 ILSESQ-E-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV 58 (219)
Q Consensus 9 I~~~a~-~-~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~Aa 58 (219)
....++ . .+++.+-.|--+.---|.-.++.|.++|+...+|-|+|+.+.+
T Consensus 59 ff~~~r~~~g~~aLvlsGGg~~g~~h~Gvl~aL~e~~l~~~~i~GtSaGAi~ 110 (298)
T cd07206 59 FFRRARHAFGRTALMLSGGASLGLFHLGVVKALWEQDLLPRVISGSSAGAIV 110 (298)
T ss_pred HHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHHHHHcCCCCCEEEEEcHHHHH
Confidence 334444 3 7888888887777667778889999999999999999987654
No 113
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.09 E-value=94 Score=21.50 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=17.9
Q ss_pred HHhCCCcEEEeCchhHHHHHHHhCCC
Q 027789 39 AKKLGIQVKAVHNASVMNAVGICGLQ 64 (219)
Q Consensus 39 l~~~gI~vevVPGVSs~~Aaa~~gl~ 64 (219)
|+++|+++++||=....++. +|+.
T Consensus 21 lk~~gi~~~liP~P~~i~~~--CG~a 44 (73)
T PF11823_consen 21 LKKNGIPVRLIPTPREISAG--CGLA 44 (73)
T ss_pred HHHCCCcEEEeCCChhccCC--CCEE
Confidence 77789999999988776443 4553
No 114
>PRK13054 lipid kinase; Reviewed
Probab=20.95 E-value=3.7e+02 Score=23.58 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=38.0
Q ss_pred HHHHHHHhc-C-CCeEEEecCCccccccHHHHHHHHHhC----CCcEEEeCchhHHHHHHHhCCC
Q 027789 6 ADKILSESQ-E-SNVAFLVVGDPFGATTHTDLVVRAKKL----GIQVKAVHNASVMNAVGICGLQ 64 (219)
Q Consensus 6 ~~~I~~~a~-~-~~Vv~L~~GDP~iyst~~el~~~l~~~----gI~vevVPGVSs~~Aaa~~gl~ 64 (219)
+.++.+.+. . -+++...+|| ||..+.+..+... .+++-+||+=|.=.=|-.+|+|
T Consensus 45 a~~~a~~~~~~~~d~vvv~GGD----GTl~evv~~l~~~~~~~~~~lgiiP~GTgNdfar~lgi~ 105 (300)
T PRK13054 45 AARYVEEALALGVATVIAGGGD----GTINEVATALAQLEGDARPALGILPLGTANDFATAAGIP 105 (300)
T ss_pred HHHHHHHHHHcCCCEEEEECCc----cHHHHHHHHHHhhccCCCCcEEEEeCCcHhHHHHhcCCC
Confidence 344554443 3 5899999999 8888888887643 4789999988763334345665
No 115
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=20.82 E-value=1.6e+02 Score=22.24 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=26.4
Q ss_pred CeEEEecCCccccccHHHHHHHHHhCCC----cEEEeCchhHHHHHHHhCCCc
Q 027789 17 NVAFLVVGDPFGATTHTDLVVRAKKLGI----QVKAVHNASVMNAVGICGLQL 65 (219)
Q Consensus 17 ~Vv~L~~GDP~iyst~~el~~~l~~~gI----~vevVPGVSs~~Aaa~~gl~l 65 (219)
+++...+|| ||..+.+..+.+.+. ++-++|+=|.=.-+-.+|++.
T Consensus 56 ~~ivv~GGD----GTl~~vv~~l~~~~~~~~~~l~iiP~GT~N~~ar~lg~~~ 104 (130)
T PF00781_consen 56 DVIVVVGGD----GTLNEVVNGLMGSDREDKPPLGIIPAGTGNDFARSLGIPS 104 (130)
T ss_dssp SEEEEEESH----HHHHHHHHHHCTSTSSS--EEEEEE-SSS-HHHHHTT--S
T ss_pred cEEEEEcCc----cHHHHHHHHHhhcCCCccceEEEecCCChhHHHHHcCCCC
Confidence 677777787 677777777766654 777777655422234455443
No 116
>COG3365 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.79 E-value=1.6e+02 Score=22.94 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=18.6
Q ss_pred hhHHHHHHHhcCCCeEEEecC-Ccc
Q 027789 4 EKADKILSESQESNVAFLVVG-DPF 27 (219)
Q Consensus 4 ~~~~~I~~~a~~~~Vv~L~~G-DP~ 27 (219)
+..+-|++..++.+|+.|-.| ||.
T Consensus 21 Ekvr~Iid~vr~G~IlVLE~gL~P~ 45 (118)
T COG3365 21 EKVRYIIDKVREGDILVLEGGLTPE 45 (118)
T ss_pred HHHHHHHHhccCCcEEEEeCCCChH
Confidence 455678999999888888776 664
No 117
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=20.68 E-value=1.3e+02 Score=26.27 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=32.7
Q ss_pred HHHHHhcCCCeEEEecCCccccc------cHHHHHHHHHhCCCcEEEeCchhHHHHH
Q 027789 8 KILSESQESNVAFLVVGDPFGAT------THTDLVVRAKKLGIQVKAVHNASVMNAV 58 (219)
Q Consensus 8 ~I~~~a~~~~Vv~L~~GDP~iys------t~~el~~~l~~~gI~vevVPGVSs~~Aa 58 (219)
++++..++-+++++..||++-+. ...+.+..+-+.| -++-|.|+..++
T Consensus 75 ~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G---~vi~G~SAGA~i 128 (250)
T TIGR02069 75 NAIALLSNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEG---IILGGTSAGAAV 128 (250)
T ss_pred HHHHHHhhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcC---CeEEEccHHHHh
Confidence 45666667899999999998765 2223344344456 456699988776
No 118
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=20.63 E-value=94 Score=22.51 Aligned_cols=21 Identities=10% Similarity=0.273 Sum_probs=16.7
Q ss_pred cHHHHHHHHHhCCCcEEEeCc
Q 027789 31 THTDLVVRAKKLGIQVKAVHN 51 (219)
Q Consensus 31 t~~el~~~l~~~gI~vevVPG 51 (219)
+.+.-++.|++.|++|+.+++
T Consensus 35 aVwK~Iq~Lr~~G~~I~s~~~ 55 (79)
T COG1654 35 AVWKHIQQLREEGVDIESVRG 55 (79)
T ss_pred HHHHHHHHHHHhCCceEecCC
Confidence 345567778999999999987
No 119
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=20.49 E-value=96 Score=26.50 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=29.5
Q ss_pred CCeEEEecCCccccccHHHHHHHHHhCC----CcEEE--eCchhH
Q 027789 16 SNVAFLVVGDPFGATTHTDLVVRAKKLG----IQVKA--VHNASV 54 (219)
Q Consensus 16 ~~Vv~L~~GDP~iyst~~el~~~l~~~g----I~vev--VPGVSs 54 (219)
..+..++.|||++.+-..+.+.++++.| .++.+ +|.-..
T Consensus 26 ~~~~~ikvg~~~f~~~G~~~i~~l~~~~~~i~~D~Kl~Di~~t~~ 70 (230)
T PRK00230 26 PAVLFVKVGMELFTAGGPQFVRELKQRGFKVFLDLKLHDIPNTVA 70 (230)
T ss_pred CcccEEEEcHHHHHhcCHHHHHHHHhcCCCEEEEeehhhccccHH
Confidence 4678899999999988788898988864 34455 665443
No 120
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=20.43 E-value=1.3e+02 Score=26.66 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=38.6
Q ss_pred HHhcCCCeEEEecCCccccccHHHHHHHHHhCCCcEEEeCchhHHH--HH-HHhCC
Q 027789 11 SESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMN--AV-GICGL 63 (219)
Q Consensus 11 ~~a~~~~Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGVSs~~--Aa-a~~gl 63 (219)
..+.+++|+..-.|==+=--.|.=.++.|.++||++..|-|.|+.. |+ =++|.
T Consensus 4 r~l~g~~igLVL~GGGaRG~ahiGVL~aLeE~gi~~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 4 RRLCGQAIGLVLGGGGARGISHIGILQALEEAGIPIDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred hHhcCCCEEEEECCcHHHHHHHHHHHHHHHHcCCCccEEEEECHHHHHHHHHHcCC
Confidence 3444567777777765555567778999999999999999999754 44 34453
No 121
>PRK05670 anthranilate synthase component II; Provisional
Probab=20.25 E-value=1.2e+02 Score=24.84 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=25.0
Q ss_pred eEEEecCCccccccHHHHHHHHHhCCCcEEEeCch
Q 027789 18 VAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNA 52 (219)
Q Consensus 18 Vv~L~~GDP~iyst~~el~~~l~~~gI~vevVPGV 52 (219)
|.++.-||-+.+. +.+.|++.|++++++|--
T Consensus 2 iliid~~d~f~~~----i~~~l~~~g~~~~v~~~~ 32 (189)
T PRK05670 2 ILLIDNYDSFTYN----LVQYLGELGAEVVVYRND 32 (189)
T ss_pred EEEEECCCchHHH----HHHHHHHCCCcEEEEECC
Confidence 6677888866665 788888899999999864
Done!