BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027791
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
VL+G PG K A+ + + E+PHIS G + R + + L + + +++G LVP++V
Sbjct: 4 VLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEV 63
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYT 166
++ +RL + + GF+LDG PRT QA +L+ T
Sbjct: 64 TIGIVHERLSKDDC--QKGFLLDGFPRTVAQADALDSLLT 101
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K A+ + +PHIS G + R + + L Q ++ G LVP
Sbjct: 1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVII 183
++V ++ +RL + ++GF+LDG PRT QA +LE TM Y + +
Sbjct: 61 DEVTIGIVRERLSKDDC--QNGFLLDGFPRTVAQAEALE---TMLADIGRKLDYVIHIDV 115
Query: 184 GSVILNEQVDG-SLCLTC 200
+L E++ G +C C
Sbjct: 116 RQDVLMERLTGRRICRNC 133
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL 121
+GV+ VL+G PG K A L+K V H++ G ++R ++ S L K++ ++ GKL
Sbjct: 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 74
Query: 122 VPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
V ++++ L+ K LE + +GF+LDG PRT QA L+
Sbjct: 75 VSDEMVLELIEKNLETPPCK--NGFLLDGFPRTVRQAEMLD 113
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 56 AGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQ-IAN 114
A SP + V +VL G PG K + L K H+S G L+R E + Y + I N
Sbjct: 9 AFSPDQVSVIFVL-GGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKN 67
Query: 115 AVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFL 174
+ EG++VP+++ ALL + + + F++DG PR QA+S E + LF
Sbjct: 68 CIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFF 127
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL 121
+G++ VL+G PG K A L++ V H++ G ++R ++ S L K++ ++ GKL
Sbjct: 15 KGIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 74
Query: 122 VPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
V ++++ L+ K LE + +GF+LDG PRT QA L+
Sbjct: 75 VSDEMVVELIEKNLETPLCK--NGFLLDGFPRTVRQAEMLD 113
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
VL+G PG K AD + + PHIS G + R + + L + + +++G LVP++V
Sbjct: 4 VLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEV 63
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
++ +RL + ++GF+LDG PRT QA +L+
Sbjct: 64 TIGIVRERLSKSDC--DNGFLLDGFPRTVPQAEALD 97
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K + + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
++V ++ +RL G E GF+LDG PRT Q
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
VL+G PG K A+ + + +PHIS G + R + + L + + +++G+LVP++V
Sbjct: 4 VLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
++ +RL + E GF+LDG PRT Q
Sbjct: 64 TIGIVRERLSKSDC--ERGFLLDGFPRTVAQ 92
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ +L+G PG K A + + +P IS G ++R + S L KQ + ++ GKLV
Sbjct: 1 MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
++++ AL+ +R+ + R +GF+LDG PRT QA +++
Sbjct: 61 DELVIALVKERIAQEDCR--NGFLLDGFPRTIPQADAMK 97
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ +L+G PG K A + + +P IS G ++R + S L KQ + ++ GKLV
Sbjct: 1 MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
++++ AL+ +R+ + R +GF+LDG PRT QA +++
Sbjct: 61 DELVIALVKERIAQEDCR--NGFLLDGFPRTIPQADAMK 97
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE 124
+++ +G PG K + NL K H+S G L+R+ ++ L +I N +NEGKLV +
Sbjct: 31 RYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDD 90
Query: 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSL 161
++ +L+ ++L+ + + GFILDG PR QA L
Sbjct: 91 QMVLSLVDEKLKTP--QCKKGFILDGYPRNVKQAEDL 125
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K + + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
++V ++ +RL G E GF+LDG PRT Q
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K + + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
++V ++ +RL G E GF+LDG PRT Q
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K + + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
++V ++ +RL G E GF+LDG PRT Q
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K + + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
++V ++ +RL G E GF+LDG PRT Q
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K + + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
++V ++ +RL G E GF+LDG PRT Q
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K + + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
++V ++ +RL G E GF+LDG PRT Q
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K + + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
++V ++ +RL G E GF+LDG PRT Q
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ VLIG PG K A NL + H++ G ++R +++ + L + +++G LV
Sbjct: 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
+D++ ++ L ++GFILDG PRT QA L+
Sbjct: 65 DDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLD 102
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ VLIG PG K A NL + H++ G ++R +++ + L + +++G LV
Sbjct: 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
+D++ ++ L ++GFILDG PRT QA L+
Sbjct: 65 DDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLD 102
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE 124
+ +L+G PG K A+ + + +P IS G +R + + L + +EGKLVP+
Sbjct: 10 RLILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPD 69
Query: 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQA 158
+I L+ +RL+E +G++ DG PRT QA
Sbjct: 70 SLIIGLVKERLKEADC--ANGYLFDGFPRTIAQA 101
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ +L+G P K A + + +P IS G ++R + S L KQ + ++ GKLV
Sbjct: 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
++++ AL+ +R+ + R +GF+LDG PRT QA +++
Sbjct: 61 DELVIALVKERIAQEDCR--NGFLLDGFPRTIPQADAMK 97
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ +L+G PG K A L++ L +P IS G L R+ + + L + ++ G LVP
Sbjct: 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 80
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSL 161
D+ L+ RL +GFILDG PR+ QA +L
Sbjct: 81 SDLTNELVDDRLNN--PDAANGFILDGYPRSVEQAKAL 116
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ +L+G PG K A L++ L +P IS G L R+ + + L + ++ G LVP
Sbjct: 1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSL 161
D+ L+ RL +GFILDG PR+ QA +L
Sbjct: 61 SDLTNELVDDRLNN--PDAANGFILDGYPRSVEQAKAL 96
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ ++ G P K + + ++ HIS G L+R E++ S K+ + +G+LVP
Sbjct: 6 LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVP 65
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFL 174
++++ ++ +RL + + E+G++LDG PR+ QA++LE F+ L
Sbjct: 66 DEIVVNMVKERLRQPDAQ-ENGWLLDGYPRSYSQAMALETLEIRPDTFILL 115
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ VLIG PG K A NL + H++ G ++R +++ + L + +++G LV
Sbjct: 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
+D++ ++ L ++GFIL G PRT QA L+
Sbjct: 65 DDIMVNMIKDELTNNPA-CKNGFILVGFPRTIPQAEKLD 102
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
V +G PG K A L+K HIS G ++R+ + + L K+ + G+LVP+D+
Sbjct: 4 VFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDL 63
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
I AL+ E + I DG PRT QA +L+
Sbjct: 64 IIALI-----EEVFPKHGNVIFDGFPRTVKQAEALD 94
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 89 VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFIL 148
+P IS G ++R + S L KQ + ++ GKLV ++++ AL+ +R+ + R +GF+L
Sbjct: 26 IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCR--NGFLL 83
Query: 149 DGIPRTRIQAVSLE 162
DG PRT QA +++
Sbjct: 84 DGFPRTIPQADAMK 97
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL 121
R ++ ++G PG K + ++K E+ H+S G L+R + + + +++GKL
Sbjct: 5 RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKL 64
Query: 122 VPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTM 167
+P+DV+ L+ L E + ++LDG PRT QA +L+ Y +
Sbjct: 65 IPDDVMTRLV---LHELKNLTQYNWLLDGFPRTLPQAEALDRAYQI 107
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
++ G G K + + + HI G + R+ + + L K+ ++ G LVP+D+
Sbjct: 4 LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSL 161
++ + LE +G+ G++LDG PR +QA L
Sbjct: 64 TIPMVLETLES---KGKDGWLLDGFPRNTVQAQKL 95
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
++ G G K + + + HI G + R+ + + L K+ ++ G LVP+D+
Sbjct: 4 LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSL 161
++ + LE +G+ G++LDG PR +QA L
Sbjct: 64 TIPMVLETLES---KGKDGWLLDGFPRNTVQAQKL 95
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANA-VNEGK 120
R ++ V++G PG K + ++ E+ H+S G L+R + R +A A +++GK
Sbjct: 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNML-RGTEIGVLAKAFIDQGK 64
Query: 121 LVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTM 167
L+P+DV+ L L E + ++LDG PRT QA +L+ Y +
Sbjct: 65 LIPDDVMTRLA---LHELKNLTQYSWLLDGFPRTLPQAEALDRAYQI 108
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
+IG PG K + L + H+S G L+R+EL+ S K I + + G LVP ++
Sbjct: 17 IIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIV 76
Query: 128 FALLSKRLEEGYYRGES-GFILDGIPR 153
LL + + G++ GF++DG PR
Sbjct: 77 LELLKEAMVASL--GDTRGFLIDGYPR 101
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV 122
G + +G PG K A L++ L +S G ++R ++ + L +++ + G LV
Sbjct: 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLV 63
Query: 123 PEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
P+D+I L+ + L E I DG PRT QA +L+
Sbjct: 64 PDDLILELIREELAE-------RVIFDGFPRTLAQAEALD 96
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
+LIG PG K + + K + H+S G ++R+ + + + + + + G V +++
Sbjct: 9 ILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEI 68
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSL 161
+ L+ ++ + G +GF+LDG PRT QA L
Sbjct: 69 VLGLVKEKFDLGVCV--NGFVLDGFPRTIPQAEGL 101
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
++G PG K + + + H+S G L+R E+S SA K+++ + +G+LVP + +
Sbjct: 14 VVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETV 73
Query: 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
+L + GF++DG PR Q E
Sbjct: 74 LDMLRDAM-VAKVNTSKGFLIDGYPREVQQGEEFE 107
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
++G PG K + L + H+S G L+R E+ S K++ + G+LVP +V+
Sbjct: 34 VLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVV 93
Query: 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
ALL + + + + F++DG PR Q + E
Sbjct: 94 LALLKEAMIKLVDKN-CHFLIDGYPRELDQGIKFE 127
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
++G PG K + + + H+S G L+R E+S SA K ++ + +G+LVP + +
Sbjct: 14 VVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETV 73
Query: 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
+L + GF++DG PR Q E
Sbjct: 74 LDMLRDAM-VAKVDTSKGFLIDGYPREVKQGEEFE 107
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
V++G PG K +++ + H+S G +R+ + + + + + + LVP+ V
Sbjct: 31 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 90
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
I L+ LE RG+ ++LDG PRT QA +L+
Sbjct: 91 ITRLMMSELEN--RRGQH-WLLDGFPRTLGQAEALD 123
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
V++G PG K +++ + H+S G +R+ + + + + + + LVP+ V
Sbjct: 9 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 68
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
I L+ LE RG+ ++LDG PRT QA +L+
Sbjct: 69 ITRLMMSELEN--RRGQH-WLLDGFPRTLGQAEALD 101
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPEDV 126
++G PG K + + H+S G L+R E +P S + I + EGK+VP ++
Sbjct: 8 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEI 67
Query: 127 IFALLSKRLEEGYYRG--ESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGC 179
+LL + +++ ++ F++DG PR + F+ + C
Sbjct: 68 TISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 122
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
++G PG K N+ + H+S G L+RQE S + IA + G++VP V
Sbjct: 11 VLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVT 70
Query: 128 FALLSKRLEEGYYRGESGFILDGIPR 153
LL ++ + F++DG PR
Sbjct: 71 VKLLKNAIDANQGK---NFLVDGFPR 93
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|B Chain B, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|C Chain C, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|D Chain D, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
Length = 377
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 43 HGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL 102
HG A+E ++R+ P R +WV + L+K + + MG V +
Sbjct: 219 HGGANEAVMRMIQEIGTPERAREWV------------REKLAKKERI--MGMGHRVYKAF 264
Query: 103 SPRSALYKQIANAVNE 118
PR+ + +++A V E
Sbjct: 265 DPRAGVLEKLARLVAE 280
>pdb|1NW1|A Chain A, Crystal Structure Of Choline Kinase
pdb|1NW1|B Chain B, Crystal Structure Of Choline Kinase
Length = 429
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 98 VRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKR 134
+R E P L + N E LV E VIF LLS+R
Sbjct: 101 IRNE--PNKVLLRVYFNPETESHLVAESVIFTLLSER 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,743,556
Number of Sequences: 62578
Number of extensions: 217906
Number of successful extensions: 708
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 44
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)