Query 027791
Match_columns 219
No_of_seqs 139 out of 1403
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 15:14:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02459 probable adenylate ki 100.0 3.7E-33 8E-38 241.9 16.2 140 62-208 28-167 (261)
2 PLN02674 adenylate kinase 100.0 3.8E-33 8.3E-38 240.2 15.7 146 62-216 30-189 (244)
3 PTZ00088 adenylate kinase 1; P 100.0 5.9E-32 1.3E-36 231.2 16.3 139 62-207 5-143 (229)
4 PRK14529 adenylate kinase; Pro 100.0 7.8E-32 1.7E-36 229.4 15.0 142 64-215 1-158 (223)
5 TIGR01351 adk adenylate kinase 100.0 9.8E-31 2.1E-35 219.8 15.3 135 65-207 1-137 (210)
6 PRK14526 adenylate kinase; Pro 100.0 2.1E-30 4.6E-35 219.1 15.4 143 64-215 1-152 (211)
7 PRK00279 adk adenylate kinase; 100.0 1.2E-29 2.6E-34 213.9 14.9 135 64-207 1-140 (215)
8 KOG3079 Uridylate kinase/adeny 100.0 7E-28 1.5E-32 197.4 14.6 131 60-199 5-138 (195)
9 PF00406 ADK: Adenylate kinase 100.0 1.4E-27 3.1E-32 190.5 12.6 117 68-193 1-122 (151)
10 cd01428 ADK Adenylate kinase ( 99.9 5E-27 1.1E-31 193.0 15.0 139 65-212 1-144 (194)
11 PRK13808 adenylate kinase; Pro 99.9 4.3E-27 9.2E-32 210.3 14.9 125 64-197 1-130 (333)
12 PRK14530 adenylate kinase; Pro 99.9 8.2E-27 1.8E-31 196.6 15.4 141 63-216 3-157 (215)
13 PRK14532 adenylate kinase; Pro 99.9 4.1E-26 8.9E-31 187.9 15.1 125 64-197 1-130 (188)
14 PRK14531 adenylate kinase; Pro 99.9 8.8E-26 1.9E-30 186.0 14.3 124 63-196 2-130 (183)
15 PRK14528 adenylate kinase; Pro 99.9 2.5E-25 5.3E-30 184.3 15.2 126 64-198 2-132 (186)
16 KOG3078 Adenylate kinase [Nucl 99.9 5.7E-26 1.2E-30 193.3 11.3 137 62-207 14-151 (235)
17 PLN02842 nucleotide kinase 99.9 1.5E-25 3.2E-30 209.3 14.6 133 67-207 1-134 (505)
18 TIGR01359 UMP_CMP_kin_fam UMP- 99.9 6.2E-25 1.3E-29 179.6 14.1 123 65-197 1-127 (183)
19 PLN02200 adenylate kinase fami 99.9 2.1E-24 4.6E-29 185.0 15.7 127 60-196 40-168 (234)
20 COG0563 Adk Adenylate kinase a 99.9 1.8E-24 3.9E-29 178.5 14.6 124 64-196 1-129 (178)
21 PRK02496 adk adenylate kinase; 99.9 2.3E-24 5.1E-29 177.0 14.2 124 63-195 1-129 (184)
22 PRK14527 adenylate kinase; Pro 99.9 1.6E-23 3.5E-28 173.4 15.3 128 61-198 4-136 (191)
23 TIGR01360 aden_kin_iso1 adenyl 99.9 6E-22 1.3E-26 161.8 15.3 126 62-195 2-128 (188)
24 PRK01184 hypothetical protein; 99.6 2.8E-15 6.1E-20 122.9 13.5 117 64-195 2-125 (184)
25 PRK08356 hypothetical protein; 99.6 3.5E-15 7.6E-20 124.0 10.8 120 62-197 4-138 (195)
26 KOG3347 Predicted nucleotide k 99.6 3.8E-15 8.2E-20 119.0 7.5 129 61-215 5-133 (176)
27 PRK06217 hypothetical protein; 99.6 1.2E-14 2.6E-19 119.5 10.6 108 63-198 1-108 (183)
28 PRK08118 topology modulation p 99.6 1.5E-14 3.4E-19 117.9 10.3 99 64-196 2-101 (167)
29 PRK03839 putative kinase; Prov 99.5 2.9E-14 6.4E-19 116.6 10.0 102 64-196 1-102 (180)
30 PRK07261 topology modulation p 99.4 6.8E-13 1.5E-17 108.5 9.0 102 64-197 1-102 (171)
31 PRK13973 thymidylate kinase; P 99.4 7.8E-13 1.7E-17 111.6 9.2 116 63-196 3-151 (213)
32 COG1936 Predicted nucleotide k 99.4 4.6E-13 9.9E-18 109.4 7.2 123 64-216 1-124 (180)
33 COG1102 Cmk Cytidylate kinase 99.4 1.3E-12 2.8E-17 105.8 9.0 111 64-195 1-112 (179)
34 PRK13949 shikimate kinase; Pro 99.4 3.7E-12 8.1E-17 104.0 11.8 108 64-193 2-113 (169)
35 PRK00625 shikimate kinase; Pro 99.4 6.5E-12 1.4E-16 103.2 11.2 116 64-197 1-119 (173)
36 PRK13974 thymidylate kinase; P 99.4 4E-12 8.6E-17 107.2 9.5 127 62-195 2-156 (212)
37 PRK14730 coaE dephospho-CoA ki 99.3 6.2E-12 1.3E-16 105.0 9.7 120 64-195 2-147 (195)
38 COG0703 AroK Shikimate kinase 99.3 9.8E-12 2.1E-16 101.9 9.6 109 63-192 2-113 (172)
39 PHA02530 pseT polynucleotide k 99.3 6.9E-12 1.5E-16 110.1 9.0 118 63-195 2-124 (300)
40 PRK08233 hypothetical protein; 99.3 1.2E-11 2.6E-16 100.3 9.5 119 62-196 2-120 (182)
41 PF13671 AAA_33: AAA domain; P 99.3 5.2E-12 1.1E-16 98.6 7.1 114 65-197 1-121 (143)
42 PRK04182 cytidylate kinase; Pr 99.3 8E-12 1.7E-16 101.0 8.0 112 64-195 1-113 (180)
43 TIGR02173 cyt_kin_arch cytidyl 99.3 1.8E-11 3.9E-16 98.3 9.8 112 64-195 1-113 (171)
44 PRK00081 coaE dephospho-CoA ki 99.3 1.1E-11 2.4E-16 103.2 8.8 120 63-195 2-146 (194)
45 cd02022 DPCK Dephospho-coenzym 99.3 1.1E-11 2.4E-16 101.7 8.6 118 65-195 1-143 (179)
46 PRK13947 shikimate kinase; Pro 99.3 5E-11 1.1E-15 96.2 10.8 112 64-197 2-117 (171)
47 COG0237 CoaE Dephospho-CoA kin 99.2 7.1E-11 1.5E-15 99.3 11.3 118 63-195 2-145 (201)
48 PRK04040 adenylate kinase; Pro 99.2 2.9E-11 6.3E-16 100.5 8.6 117 63-193 2-130 (188)
49 PRK13975 thymidylate kinase; P 99.2 2.1E-10 4.5E-15 94.6 13.0 115 63-195 2-135 (196)
50 PRK06762 hypothetical protein; 99.2 6.4E-11 1.4E-15 95.4 9.4 111 63-196 2-118 (166)
51 PLN02924 thymidylate kinase 99.2 2.1E-10 4.5E-15 97.7 13.0 127 57-192 10-154 (220)
52 cd02021 GntK Gluconate kinase 99.2 1.3E-10 2.9E-15 91.9 11.0 113 65-195 1-119 (150)
53 PF13207 AAA_17: AAA domain; P 99.2 1.1E-11 2.3E-16 94.4 4.5 102 65-180 1-103 (121)
54 PRK13946 shikimate kinase; Pro 99.2 1.5E-10 3.3E-15 95.3 11.4 115 61-195 8-124 (184)
55 COG0125 Tmk Thymidylate kinase 99.2 3.9E-10 8.4E-15 95.4 13.7 122 62-197 2-151 (208)
56 PRK13948 shikimate kinase; Pro 99.2 1.7E-10 3.8E-15 95.5 11.3 111 61-193 8-122 (182)
57 cd00464 SK Shikimate kinase (S 99.2 2.4E-10 5.2E-15 90.2 11.7 109 66-195 2-113 (154)
58 PRK00698 tmk thymidylate kinas 99.2 2.2E-10 4.7E-15 94.7 11.3 121 62-195 2-149 (205)
59 TIGR00152 dephospho-CoA kinase 99.2 8.2E-11 1.8E-15 97.1 8.7 119 65-195 1-145 (188)
60 TIGR00041 DTMP_kinase thymidyl 99.2 1.8E-10 3.9E-15 94.8 10.0 120 63-196 3-150 (195)
61 PRK03731 aroL shikimate kinase 99.2 4.8E-10 1E-14 90.7 12.2 109 64-195 3-115 (171)
62 PRK00131 aroK shikimate kinase 99.2 2.6E-10 5.7E-15 91.4 10.3 114 62-195 3-118 (175)
63 PRK12339 2-phosphoglycerate ki 99.1 6.7E-11 1.4E-15 99.2 6.4 121 62-196 2-142 (197)
64 PLN02422 dephospho-CoA kinase 99.1 3E-10 6.5E-15 97.5 10.2 117 65-195 3-147 (232)
65 PRK14734 coaE dephospho-CoA ki 99.1 3.9E-10 8.3E-15 94.6 10.3 119 64-195 2-147 (200)
66 cd01672 TMPK Thymidine monopho 99.1 1.3E-09 2.8E-14 89.0 12.8 119 64-196 1-148 (200)
67 PRK06547 hypothetical protein; 99.1 2E-10 4.4E-15 94.3 7.6 126 60-196 12-140 (172)
68 TIGR01313 therm_gnt_kin carboh 99.1 8.7E-10 1.9E-14 88.5 10.6 111 66-195 1-115 (163)
69 cd02020 CMPK Cytidine monophos 99.1 1.3E-10 2.8E-15 90.8 5.5 103 65-194 1-103 (147)
70 PF01121 CoaE: Dephospho-CoA k 99.1 2.7E-10 5.9E-15 94.2 7.6 119 64-195 1-144 (180)
71 PTZ00451 dephospho-CoA kinase; 99.1 5.7E-10 1.2E-14 96.5 9.6 121 64-195 2-158 (244)
72 PRK13976 thymidylate kinase; P 99.1 3E-09 6.5E-14 89.9 13.4 119 64-195 1-146 (209)
73 PRK14733 coaE dephospho-CoA ki 99.1 7.1E-10 1.5E-14 93.5 9.1 122 62-195 5-150 (204)
74 PRK14021 bifunctional shikimat 99.0 1.4E-09 2.9E-14 103.9 10.9 117 60-194 3-123 (542)
75 PRK07933 thymidylate kinase; V 99.0 2.1E-09 4.5E-14 91.0 10.3 119 64-195 1-154 (213)
76 PRK03333 coaE dephospho-CoA ki 99.0 1.2E-09 2.6E-14 100.5 9.4 119 64-194 2-144 (395)
77 PRK08154 anaerobic benzoate ca 99.0 1.4E-09 3.1E-14 96.8 9.4 120 56-195 126-248 (309)
78 PRK05057 aroK shikimate kinase 99.0 2.8E-09 6.1E-14 87.1 9.9 112 63-195 4-118 (172)
79 PLN02199 shikimate kinase 99.0 5.6E-09 1.2E-13 92.4 11.8 110 62-193 101-214 (303)
80 PRK14732 coaE dephospho-CoA ki 99.0 1.3E-09 2.9E-14 91.2 7.2 117 66-195 2-143 (196)
81 PRK05541 adenylylsulfate kinas 99.0 7.3E-09 1.6E-13 84.3 10.6 108 61-193 5-121 (176)
82 PRK14731 coaE dephospho-CoA ki 98.9 3.9E-09 8.5E-14 88.8 9.1 123 61-195 3-155 (208)
83 cd00227 CPT Chloramphenicol (C 98.9 8E-09 1.7E-13 84.2 10.3 121 63-195 2-132 (175)
84 TIGR03574 selen_PSTK L-seryl-t 98.9 9.7E-09 2.1E-13 88.3 10.9 108 65-195 1-117 (249)
85 cd01673 dNK Deoxyribonucleosid 98.9 6.7E-09 1.5E-13 85.5 9.5 119 65-196 1-147 (193)
86 PRK13951 bifunctional shikimat 98.9 5.3E-09 1.1E-13 98.7 10.0 109 64-194 1-112 (488)
87 cd02030 NDUO42 NADH:Ubiquinone 98.9 1.7E-08 3.6E-13 85.5 11.9 124 65-195 1-164 (219)
88 PF13238 AAA_18: AAA domain; P 98.9 8E-10 1.7E-14 84.0 2.7 114 66-198 1-116 (129)
89 PRK09825 idnK D-gluconate kina 98.9 2.3E-08 5E-13 82.2 11.2 110 64-195 4-120 (176)
90 PF02223 Thymidylate_kin: Thym 98.9 9.3E-09 2E-13 84.3 8.9 118 68-196 1-141 (186)
91 PF01202 SKI: Shikimate kinase 98.8 9E-09 1.9E-13 82.8 6.9 103 72-195 1-106 (158)
92 PRK11545 gntK gluconate kinase 98.8 4.2E-08 9.2E-13 79.5 10.1 105 69-195 1-112 (163)
93 KOG3220 Similar to bacterial d 98.8 6.1E-08 1.3E-12 81.3 10.9 119 64-195 2-147 (225)
94 KOG3354 Gluconate kinase [Carb 98.8 2.6E-08 5.7E-13 80.5 8.4 114 64-195 13-139 (191)
95 PRK05480 uridine/cytidine kina 98.8 4.4E-08 9.6E-13 81.9 9.0 124 61-197 4-149 (209)
96 PRK06696 uridine kinase; Valid 98.7 1.6E-08 3.4E-13 85.8 6.1 40 61-100 20-64 (223)
97 cd02024 NRK1 Nicotinamide ribo 98.7 4.1E-08 9E-13 81.7 7.9 36 66-101 2-38 (187)
98 PRK10078 ribose 1,5-bisphospho 98.7 1.5E-07 3.2E-12 77.5 10.7 116 64-195 3-132 (186)
99 TIGR00235 udk uridine kinase. 98.7 4.6E-08 1E-12 81.9 7.5 127 60-197 3-149 (207)
100 PF06414 Zeta_toxin: Zeta toxi 98.7 9.1E-08 2E-12 79.7 9.2 115 61-194 13-141 (199)
101 COG3265 GntK Gluconate kinase 98.7 1.1E-07 2.3E-12 76.3 8.7 109 69-195 1-112 (161)
102 PRK07667 uridine kinase; Provi 98.7 4.6E-08 1E-12 81.3 7.0 122 62-195 16-160 (193)
103 TIGR00017 cmk cytidylate kinas 98.7 1.1E-07 2.3E-12 80.9 9.1 39 63-101 2-40 (217)
104 smart00072 GuKc Guanylate kina 98.7 3.8E-08 8.2E-13 81.0 5.8 117 64-195 3-136 (184)
105 TIGR01663 PNK-3'Pase polynucle 98.7 1.8E-07 4E-12 88.9 10.9 101 60-196 366-470 (526)
106 PRK12338 hypothetical protein; 98.6 3.7E-07 8E-12 81.8 12.1 43 62-104 3-45 (319)
107 PHA03132 thymidine kinase; Pro 98.6 7.1E-07 1.5E-11 85.5 14.6 123 62-195 256-423 (580)
108 cd02027 APSK Adenosine 5'-phos 98.6 4.7E-07 1E-11 72.3 11.3 106 66-193 2-116 (149)
109 PRK00889 adenylylsulfate kinas 98.6 4.5E-07 9.9E-12 73.6 10.7 108 62-191 3-117 (175)
110 PRK00023 cmk cytidylate kinase 98.6 2.2E-07 4.7E-12 79.3 9.0 39 63-101 4-42 (225)
111 COG1428 Deoxynucleoside kinase 98.6 1.2E-07 2.6E-12 80.0 7.2 31 62-92 3-33 (216)
112 KOG3877 NADH:ubiquinone oxidor 98.6 1.1E-06 2.4E-11 77.1 13.3 134 57-198 65-242 (393)
113 KOG3327 Thymidylate kinase/ade 98.6 2E-07 4.3E-12 77.3 8.1 117 61-180 3-138 (208)
114 TIGR02322 phosphon_PhnN phosph 98.5 1.2E-06 2.6E-11 71.2 11.3 117 64-195 2-132 (179)
115 COG0645 Predicted kinase [Gene 98.5 1.2E-06 2.7E-11 71.5 11.0 118 64-196 2-126 (170)
116 COG2019 AdkA Archaeal adenylat 98.5 2.2E-07 4.7E-12 76.0 6.0 109 63-180 4-123 (189)
117 PRK13477 bifunctional pantoate 98.5 8.7E-07 1.9E-11 84.1 11.0 41 61-101 282-322 (512)
118 TIGR00455 apsK adenylylsulfate 98.5 2.4E-06 5.2E-11 70.0 11.9 108 61-190 16-132 (184)
119 cd02019 NK Nucleoside/nucleoti 98.5 5.4E-07 1.2E-11 62.8 6.8 22 66-87 2-23 (69)
120 COG4639 Predicted kinase [Gene 98.5 1.4E-06 3.1E-11 70.4 9.9 114 64-197 3-122 (168)
121 PF01583 APS_kinase: Adenylyls 98.5 2E-06 4.4E-11 69.7 10.9 109 62-192 1-118 (156)
122 COG0572 Udk Uridine kinase [Nu 98.5 6.4E-07 1.4E-11 76.1 8.1 125 61-197 6-151 (218)
123 COG0283 Cmk Cytidylate kinase 98.5 2.8E-06 6E-11 72.0 11.6 40 63-102 4-43 (222)
124 PTZ00301 uridine kinase; Provi 98.4 3E-07 6.5E-12 77.9 5.4 125 63-199 3-152 (210)
125 PRK04220 2-phosphoglycerate ki 98.4 2E-06 4.3E-11 76.5 10.7 42 61-102 90-131 (301)
126 cd02023 UMPK Uridine monophosp 98.4 6.9E-07 1.5E-11 73.9 7.2 34 66-99 2-38 (198)
127 TIGR03575 selen_PSTK_euk L-ser 98.4 1.5E-06 3.3E-11 78.6 9.8 34 66-99 2-41 (340)
128 PRK05537 bifunctional sulfate 98.4 2.6E-06 5.7E-11 81.9 11.4 109 61-192 390-510 (568)
129 PRK09518 bifunctional cytidyla 98.4 3.3E-07 7.2E-12 90.1 5.2 39 64-102 2-40 (712)
130 TIGR03263 guanyl_kin guanylate 98.4 8.9E-07 1.9E-11 71.8 6.3 118 64-196 2-135 (180)
131 PRK07429 phosphoribulokinase; 98.3 1E-06 2.2E-11 79.4 6.9 38 61-98 6-46 (327)
132 PLN02348 phosphoribulokinase 98.3 4.2E-07 9.2E-12 83.4 4.3 29 60-88 46-74 (395)
133 PRK03846 adenylylsulfate kinas 98.3 8.1E-06 1.8E-10 67.9 11.4 108 60-190 21-138 (198)
134 PF07931 CPT: Chloramphenicol 98.3 1.4E-06 3E-11 71.9 6.6 114 64-195 2-131 (174)
135 COG4088 Predicted nucleotide k 98.3 8.7E-06 1.9E-10 69.0 10.5 24 64-87 2-25 (261)
136 PRK05439 pantothenate kinase; 98.3 3E-06 6.6E-11 75.8 8.2 39 61-99 84-129 (311)
137 cd02025 PanK Pantothenate kina 98.3 9.1E-07 2E-11 75.2 4.6 33 66-98 2-41 (220)
138 PRK11860 bifunctional 3-phosph 98.3 5.1E-06 1.1E-10 81.2 10.4 40 62-101 441-480 (661)
139 PRK09270 nucleoside triphospha 98.3 2.7E-06 5.9E-11 72.4 7.4 27 61-87 31-57 (229)
140 PRK00300 gmk guanylate kinase; 98.3 1E-05 2.2E-10 67.1 10.6 31 62-92 4-34 (205)
141 PHA00729 NTP-binding motif con 98.3 7.6E-06 1.7E-10 70.1 10.0 112 63-197 17-142 (226)
142 cd02028 UMPK_like Uridine mono 98.3 2E-06 4.3E-11 70.8 6.0 36 65-100 1-41 (179)
143 PRK14738 gmk guanylate kinase; 98.2 3.6E-06 7.8E-11 70.7 7.4 28 59-86 9-36 (206)
144 PRK05506 bifunctional sulfate 98.2 1.1E-05 2.4E-10 78.5 11.4 111 61-191 458-575 (632)
145 PRK12337 2-phosphoglycerate ki 98.2 1.7E-05 3.8E-10 74.3 12.2 42 61-102 253-294 (475)
146 PRK14737 gmk guanylate kinase; 98.2 8.7E-06 1.9E-10 67.5 8.0 120 61-196 2-139 (186)
147 PRK05416 glmZ(sRNA)-inactivati 98.1 2.2E-05 4.7E-10 69.6 10.7 96 62-193 5-105 (288)
148 PF08433 KTI12: Chromatin asso 98.1 1.4E-05 3E-10 70.2 9.0 110 64-195 2-120 (270)
149 PF00485 PRK: Phosphoribulokin 98.1 1.3E-05 2.9E-10 66.3 8.1 24 65-88 1-24 (194)
150 PRK05800 cobU adenosylcobinami 98.1 3.1E-06 6.7E-11 69.3 4.2 38 64-101 2-41 (170)
151 PLN02165 adenylate isopentenyl 98.1 2.6E-05 5.6E-10 70.4 10.3 37 61-97 41-77 (334)
152 PRK15453 phosphoribulokinase; 98.1 1.8E-05 3.9E-10 69.9 8.8 39 61-99 3-46 (290)
153 cd02026 PRK Phosphoribulokinas 98.1 4.3E-06 9.3E-11 73.4 4.7 33 66-98 2-37 (273)
154 TIGR00554 panK_bact pantothena 98.0 2.9E-06 6.3E-11 75.2 3.3 38 61-98 60-104 (290)
155 PF00004 AAA: ATPase family as 98.0 4.7E-06 1E-10 63.3 3.6 29 66-94 1-29 (132)
156 PF03668 ATP_bind_2: P-loop AT 98.0 9E-05 2E-09 65.4 11.0 104 64-202 2-111 (284)
157 TIGR02881 spore_V_K stage V sp 98.0 4.7E-05 1E-09 66.0 9.2 27 61-87 40-66 (261)
158 COG0529 CysC Adenylylsulfate k 97.9 0.00014 3.1E-09 60.1 11.1 44 61-104 21-68 (197)
159 PRK12269 bifunctional cytidyla 97.8 1.8E-05 3.9E-10 79.3 4.8 39 64-102 35-73 (863)
160 COG2074 2-phosphoglycerate kin 97.8 8.2E-05 1.8E-09 64.7 7.7 43 61-103 87-129 (299)
161 CHL00181 cbbX CbbX; Provisiona 97.8 7.5E-05 1.6E-09 66.0 7.3 27 61-87 57-83 (287)
162 COG0194 Gmk Guanylate kinase [ 97.7 0.00057 1.2E-08 56.9 11.4 41 62-103 3-43 (191)
163 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00015 3.3E-09 69.8 9.0 119 56-180 218-365 (802)
164 PRK12724 flagellar biosynthesi 97.7 0.00028 6.1E-09 65.6 10.6 92 62-163 222-323 (432)
165 PF01591 6PF2K: 6-phosphofruct 97.7 0.00058 1.3E-08 58.4 11.3 112 59-180 8-137 (222)
166 PF13401 AAA_22: AAA domain; P 97.7 0.00026 5.6E-09 53.9 7.8 110 63-178 4-126 (131)
167 PLN02840 tRNA dimethylallyltra 97.7 6.5E-05 1.4E-09 69.7 5.2 38 59-96 17-54 (421)
168 PRK00091 miaA tRNA delta(2)-is 97.6 6.3E-05 1.4E-09 67.2 4.7 36 62-97 3-38 (307)
169 PF01745 IPT: Isopentenyl tran 97.6 0.00015 3.2E-09 61.8 6.4 120 65-191 3-139 (233)
170 smart00382 AAA ATPases associa 97.6 6.1E-05 1.3E-09 56.2 3.5 28 63-90 2-29 (148)
171 PF13189 Cytidylate_kin2: Cyti 97.6 0.00077 1.7E-08 55.3 9.8 115 65-194 1-134 (179)
172 PF13521 AAA_28: AAA domain; P 97.5 4.9E-05 1.1E-09 60.9 2.6 33 65-100 1-33 (163)
173 PHA03136 thymidine kinase; Pro 97.5 0.0012 2.6E-08 60.4 11.8 24 62-85 35-58 (378)
174 COG1618 Predicted nucleotide k 97.5 5.4E-05 1.2E-09 61.8 2.7 43 61-103 3-45 (179)
175 TIGR02880 cbbX_cfxQ probable R 97.5 0.00051 1.1E-08 60.6 8.9 26 62-87 57-82 (284)
176 TIGR00390 hslU ATP-dependent p 97.5 0.00011 2.5E-09 68.2 4.7 36 61-96 45-80 (441)
177 cd02029 PRK_like Phosphoribulo 97.5 0.00062 1.3E-08 59.9 9.1 34 66-99 2-40 (277)
178 PLN02318 phosphoribulokinase/u 97.5 0.00014 3.1E-09 70.1 5.4 36 62-97 64-100 (656)
179 PF05496 RuvB_N: Holliday junc 97.5 0.00011 2.3E-09 63.1 4.0 32 63-94 50-81 (233)
180 PF07728 AAA_5: AAA domain (dy 97.5 9.2E-05 2E-09 57.5 3.4 29 66-94 2-30 (139)
181 PF05729 NACHT: NACHT domain 97.5 0.00025 5.3E-09 55.7 5.6 23 65-87 2-24 (166)
182 PHA02575 1 deoxynucleoside mon 97.5 0.00014 3.1E-09 62.2 4.3 39 64-103 1-40 (227)
183 PRK05201 hslU ATP-dependent pr 97.4 0.0003 6.5E-09 65.5 6.6 35 62-96 49-83 (443)
184 PRK09169 hypothetical protein; 97.4 0.00088 1.9E-08 71.9 10.7 107 64-194 2111-2220(2316)
185 TIGR02640 gas_vesic_GvpN gas v 97.4 0.00034 7.5E-09 60.8 6.7 30 65-94 23-52 (262)
186 KOG3308 Uncharacterized protei 97.4 0.00051 1.1E-08 57.9 7.0 129 62-204 3-160 (225)
187 TIGR00174 miaA tRNA isopenteny 97.4 0.00015 3.3E-09 64.2 4.0 31 66-96 2-32 (287)
188 KOG0744 AAA+-type ATPase [Post 97.4 0.00012 2.6E-09 65.8 3.1 29 64-92 178-206 (423)
189 PLN02748 tRNA dimethylallyltra 97.3 0.00028 6.1E-09 66.4 5.3 36 61-96 20-55 (468)
190 cd00544 CobU Adenosylcobinamid 97.3 0.00077 1.7E-08 55.2 7.1 27 66-92 2-28 (169)
191 COG1660 Predicted P-loop-conta 97.3 0.0027 5.8E-08 55.5 10.7 104 64-202 2-112 (286)
192 PRK06761 hypothetical protein; 97.3 0.00027 5.9E-09 62.5 4.2 32 63-94 3-34 (282)
193 cd00009 AAA The AAA+ (ATPases 97.3 0.0004 8.7E-09 52.3 4.3 32 63-94 19-53 (151)
194 COG1072 CoaA Panthothenate kin 97.2 0.00039 8.4E-09 61.1 4.6 28 60-87 79-106 (283)
195 KOG0730 AAA+-type ATPase [Post 97.2 0.0026 5.7E-08 61.6 10.2 42 61-102 466-509 (693)
196 cd03115 SRP The signal recogni 97.2 0.0068 1.5E-07 48.8 11.2 23 65-87 2-24 (173)
197 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00042 9E-09 63.2 4.4 29 61-89 76-104 (361)
198 PRK14974 cell division protein 97.2 0.0041 8.8E-08 56.4 10.6 27 61-87 138-164 (336)
199 PRK03992 proteasome-activating 97.2 0.00041 8.9E-09 63.8 4.2 38 62-99 164-203 (389)
200 CHL00195 ycf46 Ycf46; Provisio 97.2 0.00045 9.8E-09 65.5 4.5 33 62-94 258-290 (489)
201 PLN00020 ribulose bisphosphate 97.2 0.00048 1E-08 63.2 4.5 41 61-101 146-188 (413)
202 PF03266 NTPase_1: NTPase; In 97.1 0.00038 8.3E-09 56.9 3.4 27 65-91 1-30 (168)
203 TIGR01650 PD_CobS cobaltochela 97.1 0.00042 9E-09 62.5 3.8 31 64-94 65-95 (327)
204 PRK12377 putative replication 97.1 0.0038 8.2E-08 54.2 9.3 36 64-99 102-142 (248)
205 PRK05342 clpX ATP-dependent pr 97.1 0.00058 1.3E-08 63.4 4.4 32 63-94 108-139 (412)
206 TIGR00150 HI0065_YjeE ATPase, 97.1 0.00072 1.6E-08 53.4 4.3 29 62-90 21-49 (133)
207 TIGR01242 26Sp45 26S proteasom 97.0 0.00071 1.5E-08 61.4 4.5 33 62-94 155-187 (364)
208 TIGR00064 ftsY signal recognit 97.0 0.0092 2E-07 52.4 11.2 27 61-87 70-96 (272)
209 KOG0731 AAA+-type ATPase conta 97.0 0.0029 6.4E-08 62.5 8.8 40 62-101 343-384 (774)
210 PF06745 KaiC: KaiC; InterPro 97.0 0.0014 3E-08 55.2 5.7 87 62-151 18-124 (226)
211 PRK08099 bifunctional DNA-bind 97.0 0.00078 1.7E-08 62.3 4.5 33 60-92 216-248 (399)
212 PTZ00454 26S protease regulato 97.0 0.00079 1.7E-08 62.3 4.5 33 62-94 178-210 (398)
213 COG0324 MiaA tRNA delta(2)-iso 97.0 0.00083 1.8E-08 60.1 4.4 35 62-96 2-36 (308)
214 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0021 4.5E-08 54.9 6.8 39 57-96 16-59 (237)
215 COG2256 MGS1 ATPase related to 97.0 0.0048 1E-07 56.9 9.3 32 64-95 49-80 (436)
216 TIGR01241 FtsH_fam ATP-depende 97.0 0.00076 1.6E-08 63.8 4.3 32 63-94 88-119 (495)
217 PRK04195 replication factor C 97.0 0.00086 1.9E-08 63.3 4.6 32 63-94 39-70 (482)
218 PRK00771 signal recognition pa 97.0 0.0049 1.1E-07 57.7 9.4 27 61-87 93-119 (437)
219 TIGR00635 ruvB Holliday juncti 97.0 0.00097 2.1E-08 58.6 4.5 29 63-91 30-58 (305)
220 TIGR00382 clpX endopeptidase C 97.0 0.00088 1.9E-08 62.2 4.4 32 63-94 116-147 (413)
221 TIGR03689 pup_AAA proteasome A 97.0 0.0044 9.6E-08 59.1 9.2 28 63-90 216-243 (512)
222 PRK04328 hypothetical protein; 96.9 0.0022 4.8E-08 55.4 6.5 25 62-86 22-46 (249)
223 TIGR02533 type_II_gspE general 96.9 0.0024 5.1E-08 60.6 7.2 32 65-96 244-278 (486)
224 PHA02244 ATPase-like protein 96.9 0.0009 2E-08 61.3 4.2 35 64-98 120-154 (383)
225 COG1222 RPT1 ATP-dependent 26S 96.9 0.0021 4.5E-08 58.6 6.0 45 62-106 184-230 (406)
226 PRK00080 ruvB Holliday junctio 96.9 0.0011 2.4E-08 59.2 4.3 30 63-92 51-80 (328)
227 TIGR01526 nadR_NMN_Atrans nico 96.9 0.0011 2.4E-08 59.6 4.2 30 63-92 162-191 (325)
228 cd00071 GMPK Guanosine monopho 96.9 0.00091 2E-08 52.6 3.2 23 66-88 2-24 (137)
229 COG2255 RuvB Holliday junction 96.9 0.001 2.2E-08 59.0 3.7 29 64-92 53-81 (332)
230 PTZ00361 26 proteosome regulat 96.8 0.0013 2.9E-08 61.5 4.5 33 62-94 216-248 (438)
231 PF13173 AAA_14: AAA domain 96.8 0.0015 3.1E-08 50.5 4.0 34 64-97 3-40 (128)
232 PLN02796 D-glycerate 3-kinase 96.8 0.0013 2.9E-08 59.7 4.2 38 61-98 98-140 (347)
233 PF13245 AAA_19: Part of AAA d 96.8 0.0014 3.1E-08 46.6 3.5 24 64-87 11-35 (76)
234 TIGR02538 type_IV_pilB type IV 96.8 0.0037 8E-08 60.3 7.4 34 65-98 318-354 (564)
235 TIGR02655 circ_KaiC circadian 96.8 0.0019 4.1E-08 61.1 5.4 88 61-152 261-363 (484)
236 PTZ00322 6-phosphofructo-2-kin 96.8 0.0056 1.2E-07 60.1 8.7 33 62-94 214-246 (664)
237 TIGR03015 pepcterm_ATPase puta 96.8 0.0043 9.3E-08 53.2 7.0 27 62-88 42-68 (269)
238 cd01124 KaiC KaiC is a circadi 96.8 0.0012 2.6E-08 53.3 3.4 31 66-96 2-37 (187)
239 PRK13342 recombination factor 96.8 0.0016 3.5E-08 60.2 4.5 33 63-95 36-68 (413)
240 PF07724 AAA_2: AAA domain (Cd 96.7 0.0018 3.8E-08 53.1 4.0 27 63-89 3-29 (171)
241 CHL00176 ftsH cell division pr 96.7 0.0017 3.8E-08 63.4 4.6 33 62-94 215-247 (638)
242 PF00910 RNA_helicase: RNA hel 96.7 0.0012 2.6E-08 49.6 2.7 22 66-87 1-22 (107)
243 PF00448 SRP54: SRP54-type pro 96.7 0.0016 3.4E-08 54.5 3.7 25 63-87 1-25 (196)
244 PF03215 Rad17: Rad17 cell cyc 96.7 0.0019 4.1E-08 61.7 4.6 30 64-93 46-75 (519)
245 TIGR00959 ffh signal recogniti 96.7 0.029 6.2E-07 52.5 12.2 27 61-87 97-123 (428)
246 PRK09087 hypothetical protein; 96.7 0.0016 3.5E-08 55.5 3.7 35 64-98 45-79 (226)
247 PRK06067 flagellar accessory p 96.7 0.0045 9.9E-08 52.5 6.4 25 62-86 24-48 (234)
248 PRK08533 flagellar accessory p 96.7 0.0037 8E-08 53.4 5.8 25 62-86 23-47 (230)
249 PRK10436 hypothetical protein; 96.7 0.0059 1.3E-07 57.6 7.6 36 65-100 220-258 (462)
250 COG2804 PulE Type II secretory 96.7 0.0026 5.7E-08 60.1 5.2 37 65-101 260-299 (500)
251 KOG1969 DNA replication checkp 96.7 0.002 4.3E-08 63.3 4.4 42 53-94 316-357 (877)
252 PF03029 ATP_bind_1: Conserved 96.7 0.0011 2.4E-08 57.1 2.5 21 68-88 1-21 (238)
253 TIGR01243 CDC48 AAA family ATP 96.7 0.0019 4.2E-08 63.9 4.5 32 63-94 487-518 (733)
254 COG0466 Lon ATP-dependent Lon 96.6 0.0018 3.9E-08 63.4 3.9 34 61-94 348-381 (782)
255 PF08477 Miro: Miro-like prote 96.6 0.002 4.3E-08 48.1 3.4 24 65-88 1-24 (119)
256 PRK10867 signal recognition pa 96.6 0.041 8.9E-07 51.5 12.8 27 61-87 98-124 (433)
257 COG1219 ClpX ATP-dependent pro 96.6 0.0019 4.1E-08 58.2 3.7 34 61-94 95-128 (408)
258 PF07726 AAA_3: ATPase family 96.6 0.0012 2.5E-08 52.0 2.1 29 65-93 1-29 (131)
259 PRK13695 putative NTPase; Prov 96.6 0.0019 4.2E-08 52.3 3.5 24 64-87 1-24 (174)
260 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.0017 3.8E-08 54.2 3.3 36 62-97 37-77 (226)
261 COG1223 Predicted ATPase (AAA+ 96.6 0.0017 3.6E-08 57.2 3.2 41 62-102 150-192 (368)
262 PLN02772 guanylate kinase 96.6 0.022 4.8E-07 52.6 10.7 30 58-87 130-159 (398)
263 PRK06620 hypothetical protein; 96.6 0.0018 3.8E-08 54.9 3.3 30 64-93 45-74 (214)
264 COG0464 SpoVK ATPases of the A 96.6 0.0022 4.8E-08 60.4 4.2 34 62-95 275-308 (494)
265 KOG0734 AAA+-type ATPase conta 96.6 0.0071 1.5E-07 57.9 7.4 34 61-94 335-368 (752)
266 KOG0739 AAA+-type ATPase [Post 96.6 0.0044 9.4E-08 55.6 5.6 41 64-104 167-209 (439)
267 PF06309 Torsin: Torsin; Inte 96.6 0.0033 7.1E-08 49.3 4.3 29 59-87 49-77 (127)
268 PRK14729 miaA tRNA delta(2)-is 96.6 0.003 6.5E-08 56.4 4.6 33 63-96 4-36 (300)
269 COG0552 FtsY Signal recognitio 96.6 0.017 3.7E-07 52.1 9.3 121 60-180 136-299 (340)
270 PHA03134 thymidine kinase; Pro 96.6 0.053 1.2E-06 49.1 12.5 35 61-95 11-47 (340)
271 PRK08903 DnaA regulatory inact 96.5 0.0028 6.2E-08 53.3 4.2 34 64-97 43-81 (227)
272 COG3709 Uncharacterized compon 96.5 0.04 8.7E-07 45.3 10.5 28 62-89 4-31 (192)
273 PLN03046 D-glycerate 3-kinase; 96.5 0.0026 5.7E-08 59.3 4.2 38 61-98 210-252 (460)
274 TIGR01425 SRP54_euk signal rec 96.5 0.026 5.7E-07 52.8 10.8 27 61-87 98-124 (429)
275 PRK06526 transposase; Provisio 96.5 0.0024 5.2E-08 55.6 3.7 40 61-100 96-140 (254)
276 KOG0737 AAA+-type ATPase [Post 96.5 0.0022 4.8E-08 58.4 3.5 46 57-102 121-168 (386)
277 PRK11784 tRNA 2-selenouridine 96.5 0.012 2.6E-07 53.5 8.1 113 64-195 142-257 (345)
278 PF02367 UPF0079: Uncharacteri 96.5 0.0036 7.9E-08 48.8 4.1 34 62-95 14-49 (123)
279 PRK14962 DNA polymerase III su 96.5 0.003 6.6E-08 59.7 4.3 29 62-90 35-63 (472)
280 PRK14961 DNA polymerase III su 96.5 0.0034 7.3E-08 57.2 4.4 29 62-90 37-65 (363)
281 PF01695 IstB_IS21: IstB-like 96.5 0.0029 6.3E-08 52.1 3.6 40 62-101 46-90 (178)
282 TIGR02655 circ_KaiC circadian 96.4 0.008 1.7E-07 56.9 6.9 38 57-95 16-59 (484)
283 COG1855 ATPase (PilT family) [ 96.4 0.0023 4.9E-08 60.0 3.1 23 65-87 265-287 (604)
284 PF13191 AAA_16: AAA ATPase do 96.4 0.0028 6.2E-08 50.7 3.3 27 61-87 22-48 (185)
285 TIGR01243 CDC48 AAA family ATP 96.4 0.0031 6.7E-08 62.5 4.2 33 62-94 211-243 (733)
286 cd01120 RecA-like_NTPases RecA 96.4 0.0025 5.5E-08 49.4 3.0 22 66-87 2-23 (165)
287 PF00625 Guanylate_kin: Guanyl 96.4 0.0036 7.8E-08 51.2 4.0 26 63-88 2-27 (183)
288 PLN03025 replication factor C 96.4 0.0031 6.7E-08 56.2 3.8 26 64-89 35-60 (319)
289 PF10662 PduV-EutP: Ethanolami 96.4 0.0028 6E-08 50.7 3.1 23 64-86 2-24 (143)
290 TIGR00763 lon ATP-dependent pr 96.4 0.0032 7E-08 62.8 4.3 33 62-94 346-378 (775)
291 COG2087 CobU Adenosyl cobinami 96.4 0.012 2.6E-07 48.3 6.8 29 64-92 1-29 (175)
292 TIGR03881 KaiC_arch_4 KaiC dom 96.4 0.0083 1.8E-07 50.5 6.2 24 62-85 19-42 (229)
293 PRK12402 replication factor C 96.4 0.0033 7.3E-08 55.6 3.9 24 65-88 38-61 (337)
294 PRK06893 DNA replication initi 96.4 0.0033 7.1E-08 53.5 3.6 32 64-95 40-76 (229)
295 TIGR00101 ureG urease accessor 96.4 0.0038 8.3E-08 52.2 3.9 25 63-87 1-25 (199)
296 KOG0743 AAA+-type ATPase [Post 96.4 0.0027 6E-08 59.1 3.2 30 65-94 237-266 (457)
297 cd04163 Era Era subfamily. Er 96.4 0.0035 7.5E-08 48.3 3.3 24 63-86 3-26 (168)
298 PHA02544 44 clamp loader, smal 96.3 0.0045 9.7E-08 54.6 4.4 31 62-92 42-72 (316)
299 PRK08084 DNA replication initi 96.3 0.003 6.5E-08 54.0 3.1 33 64-96 46-83 (235)
300 PRK12723 flagellar biosynthesi 96.3 0.023 4.9E-07 52.5 9.0 26 62-87 173-198 (388)
301 COG1224 TIP49 DNA helicase TIP 96.3 0.0042 9.1E-08 56.8 4.1 43 61-103 63-109 (450)
302 PRK09183 transposase/IS protei 96.3 0.004 8.7E-08 54.2 3.8 38 61-98 100-142 (259)
303 COG4185 Uncharacterized protei 96.3 0.018 3.9E-07 47.2 7.2 38 63-100 2-41 (187)
304 PRK06921 hypothetical protein; 96.3 0.043 9.3E-07 48.0 10.2 25 63-87 117-141 (266)
305 CHL00206 ycf2 Ycf2; Provisiona 96.3 0.004 8.8E-08 66.7 4.4 38 62-99 1629-1668(2281)
306 TIGR02237 recomb_radB DNA repa 96.3 0.0058 1.2E-07 50.7 4.5 36 61-96 10-50 (209)
307 PRK11034 clpA ATP-dependent Cl 96.3 0.0047 1E-07 61.6 4.6 33 61-93 485-518 (758)
308 PRK06645 DNA polymerase III su 96.3 0.0039 8.5E-08 59.4 3.9 30 62-91 42-71 (507)
309 PF06068 TIP49: TIP49 C-termin 96.3 0.0047 1E-07 56.7 4.1 40 62-101 49-92 (398)
310 KOG2004 Mitochondrial ATP-depe 96.3 0.0037 7.9E-08 61.4 3.5 37 60-96 435-473 (906)
311 KOG1532 GTPase XAB1, interacts 96.3 0.026 5.6E-07 50.1 8.4 44 57-100 13-61 (366)
312 PF03308 ArgK: ArgK protein; 96.2 0.0048 1E-07 54.0 3.9 26 62-87 28-53 (266)
313 cd01131 PilT Pilus retraction 96.2 0.0044 9.5E-08 51.6 3.5 24 65-88 3-26 (198)
314 KOG0989 Replication factor C, 96.2 0.0047 1E-07 55.3 3.8 39 61-99 55-93 (346)
315 PRK09435 membrane ATPase/prote 96.2 0.005 1.1E-07 55.7 4.1 27 61-87 54-80 (332)
316 PF01078 Mg_chelatase: Magnesi 96.2 0.0038 8.2E-08 52.8 3.1 31 64-96 23-53 (206)
317 PF00931 NB-ARC: NB-ARC domain 96.2 0.015 3.2E-07 50.2 6.9 83 61-152 17-111 (287)
318 PRK12323 DNA polymerase III su 96.2 0.048 1E-06 53.6 11.0 28 62-89 37-64 (700)
319 PF01926 MMR_HSR1: 50S ribosom 96.2 0.0045 9.8E-08 46.4 3.2 21 65-85 1-21 (116)
320 PRK10416 signal recognition pa 96.2 0.0052 1.1E-07 55.2 4.1 27 61-87 112-138 (318)
321 PRK05973 replicative DNA helic 96.2 0.015 3.3E-07 50.2 6.8 35 61-95 62-101 (237)
322 PRK08181 transposase; Validate 96.2 0.0057 1.2E-07 53.8 4.1 40 62-101 105-149 (269)
323 COG0714 MoxR-like ATPases [Gen 96.2 0.0049 1.1E-07 55.2 3.8 30 65-94 45-74 (329)
324 PF13479 AAA_24: AAA domain 96.2 0.0038 8.3E-08 52.6 2.9 22 62-83 2-23 (213)
325 cd04155 Arl3 Arl3 subfamily. 96.2 0.0051 1.1E-07 48.8 3.5 25 62-86 13-37 (173)
326 PRK14956 DNA polymerase III su 96.2 0.0057 1.2E-07 57.9 4.3 29 63-91 40-68 (484)
327 PRK14963 DNA polymerase III su 96.2 0.0046 1E-07 58.9 3.7 28 62-89 35-62 (504)
328 TIGR02639 ClpA ATP-dependent C 96.2 0.0063 1.4E-07 60.4 4.7 39 60-98 480-521 (731)
329 cd01918 HprK_C HprK/P, the bif 96.1 0.0073 1.6E-07 48.6 4.2 33 62-95 13-45 (149)
330 PRK13341 recombination factor 96.1 0.006 1.3E-07 60.5 4.4 34 63-96 52-85 (725)
331 TIGR01618 phage_P_loop phage n 96.1 0.0044 9.5E-08 52.9 3.0 25 61-85 10-34 (220)
332 PRK04296 thymidine kinase; Pro 96.1 0.0053 1.2E-07 50.8 3.5 25 63-87 2-26 (190)
333 PHA03135 thymidine kinase; Pro 96.1 0.13 2.7E-06 46.8 12.4 26 61-86 8-33 (343)
334 PRK10787 DNA-binding ATP-depen 96.1 0.0061 1.3E-07 61.0 4.4 33 62-94 348-380 (784)
335 PRK07003 DNA polymerase III su 96.1 0.061 1.3E-06 53.7 11.1 29 62-90 37-65 (830)
336 KOG1533 Predicted GTPase [Gene 96.1 0.003 6.5E-08 54.7 1.8 22 66-87 5-26 (290)
337 COG0465 HflB ATP-dependent Zn 96.1 0.031 6.7E-07 54.2 8.7 42 61-102 181-224 (596)
338 KOG0651 26S proteasome regulat 96.1 0.015 3.2E-07 52.4 6.0 42 61-102 164-207 (388)
339 PRK15455 PrkA family serine pr 96.1 0.0055 1.2E-07 59.3 3.6 27 61-87 101-127 (644)
340 PRK14955 DNA polymerase III su 96.1 0.0069 1.5E-07 55.8 4.2 29 62-90 37-65 (397)
341 KOG0733 Nuclear AAA ATPase (VC 96.0 0.0053 1.1E-07 59.4 3.3 40 63-102 545-586 (802)
342 cd01130 VirB11-like_ATPase Typ 96.0 0.0066 1.4E-07 49.9 3.5 26 62-87 24-49 (186)
343 PRK10751 molybdopterin-guanine 96.0 0.0071 1.5E-07 49.8 3.6 27 62-88 5-31 (173)
344 KOG1970 Checkpoint RAD17-RFC c 96.0 0.0064 1.4E-07 58.1 3.7 31 62-92 109-139 (634)
345 cd01394 radB RadB. The archaea 96.0 0.0098 2.1E-07 49.7 4.4 35 61-95 17-56 (218)
346 PRK09302 circadian clock prote 96.0 0.016 3.4E-07 55.1 6.2 34 62-95 272-310 (509)
347 cd01983 Fer4_NifH The Fer4_Nif 95.9 0.009 2E-07 42.1 3.6 31 66-96 2-35 (99)
348 PF00005 ABC_tran: ABC transpo 95.9 0.0061 1.3E-07 46.8 2.8 26 62-87 10-35 (137)
349 KOG0738 AAA+-type ATPase [Post 95.9 0.0067 1.5E-07 56.0 3.5 30 65-94 247-276 (491)
350 smart00173 RAS Ras subfamily o 95.9 0.0075 1.6E-07 47.3 3.4 21 65-85 2-22 (164)
351 cd04138 H_N_K_Ras_like H-Ras/N 95.9 0.0078 1.7E-07 46.6 3.4 23 64-86 2-24 (162)
352 PRK14964 DNA polymerase III su 95.9 0.0082 1.8E-07 57.0 4.2 29 62-90 34-62 (491)
353 PRK13768 GTPase; Provisional 95.9 0.0075 1.6E-07 52.3 3.6 25 63-87 2-26 (253)
354 cd00820 PEPCK_HprK Phosphoenol 95.9 0.0085 1.9E-07 45.6 3.5 23 62-84 14-36 (107)
355 PRK14957 DNA polymerase III su 95.9 0.0086 1.9E-07 57.6 4.3 27 63-89 38-64 (546)
356 PHA02624 large T antigen; Prov 95.9 0.0093 2E-07 57.9 4.5 34 62-95 430-463 (647)
357 PRK09302 circadian clock prote 95.9 0.018 3.9E-07 54.7 6.4 24 62-85 30-53 (509)
358 TIGR03878 thermo_KaiC_2 KaiC d 95.9 0.0087 1.9E-07 52.0 3.9 38 57-95 31-73 (259)
359 KOG0635 Adenosine 5'-phosphosu 95.9 0.017 3.7E-07 47.0 5.3 43 61-103 29-75 (207)
360 smart00175 RAB Rab subfamily o 95.9 0.0073 1.6E-07 47.1 3.2 22 64-85 1-22 (164)
361 cd04119 RJL RJL (RabJ-Like) su 95.9 0.0075 1.6E-07 47.0 3.3 23 64-86 1-23 (168)
362 PF08303 tRNA_lig_kinase: tRNA 95.9 0.0071 1.5E-07 49.5 3.1 32 66-97 2-34 (168)
363 PRK10733 hflB ATP-dependent me 95.9 0.0079 1.7E-07 58.9 4.0 31 65-95 187-217 (644)
364 TIGR00231 small_GTP small GTP- 95.9 0.0085 1.8E-07 45.3 3.4 24 64-87 2-25 (161)
365 TIGR03499 FlhF flagellar biosy 95.9 0.0086 1.9E-07 52.7 3.9 26 62-87 193-218 (282)
366 COG1220 HslU ATP-dependent pro 95.9 0.0086 1.9E-07 54.5 3.8 34 61-94 48-81 (444)
367 KOG1384 tRNA delta(2)-isopente 95.9 0.043 9.3E-07 49.5 8.2 35 62-96 6-40 (348)
368 TIGR03880 KaiC_arch_3 KaiC dom 95.9 0.022 4.8E-07 47.9 6.2 35 62-96 15-54 (224)
369 TIGR00073 hypB hydrogenase acc 95.9 0.009 2E-07 49.8 3.8 28 61-88 20-47 (207)
370 PRK14958 DNA polymerase III su 95.9 0.0095 2.1E-07 56.8 4.3 29 62-90 37-65 (509)
371 PRK07952 DNA replication prote 95.9 0.0077 1.7E-07 52.2 3.4 35 65-99 101-140 (244)
372 PF03205 MobB: Molybdopterin g 95.9 0.0088 1.9E-07 47.3 3.4 29 64-92 1-32 (140)
373 PRK14960 DNA polymerase III su 95.8 0.01 2.2E-07 58.3 4.5 30 62-91 36-65 (702)
374 PRK14949 DNA polymerase III su 95.8 0.0085 1.8E-07 60.5 4.0 29 62-90 37-65 (944)
375 TIGR00750 lao LAO/AO transport 95.8 0.0095 2.1E-07 52.8 4.0 27 61-87 32-58 (300)
376 PRK14969 DNA polymerase III su 95.8 0.01 2.2E-07 56.9 4.3 29 62-90 37-65 (527)
377 cd04164 trmE TrmE (MnmE, ThdF, 95.8 0.0088 1.9E-07 46.0 3.3 24 63-86 1-24 (157)
378 KOG4235 Mitochondrial thymidin 95.8 0.095 2.1E-06 44.4 9.5 30 165-201 152-181 (244)
379 cd00154 Rab Rab family. Rab G 95.8 0.008 1.7E-07 45.9 3.0 22 64-85 1-22 (159)
380 cd03292 ABC_FtsE_transporter F 95.8 0.009 2E-07 49.6 3.5 26 62-87 26-51 (214)
381 cd04136 Rap_like Rap-like subf 95.8 0.0094 2E-07 46.5 3.4 22 64-85 2-23 (163)
382 cd04113 Rab4 Rab4 subfamily. 95.8 0.0083 1.8E-07 47.0 3.1 22 64-85 1-22 (161)
383 PRK10646 ADP-binding protein; 95.8 0.014 2.9E-07 47.3 4.3 28 62-89 27-54 (153)
384 COG1484 DnaC DNA replication p 95.8 0.009 1.9E-07 52.0 3.5 40 62-101 104-148 (254)
385 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.8 0.0094 2E-07 49.7 3.5 26 62-87 29-54 (218)
386 TIGR01166 cbiO cobalt transpor 95.8 0.0096 2.1E-07 48.7 3.5 26 62-87 17-42 (190)
387 PF01443 Viral_helicase1: Vira 95.8 0.007 1.5E-07 50.6 2.7 22 66-87 1-22 (234)
388 PRK14722 flhF flagellar biosyn 95.8 0.0097 2.1E-07 54.7 3.8 27 61-87 135-161 (374)
389 cd03264 ABC_drug_resistance_li 95.8 0.0088 1.9E-07 49.7 3.2 24 63-87 26-49 (211)
390 cd03301 ABC_MalK_N The N-termi 95.7 0.01 2.2E-07 49.4 3.6 26 62-87 25-50 (213)
391 PRK00411 cdc6 cell division co 95.7 0.011 2.5E-07 53.6 4.2 26 62-87 54-79 (394)
392 PTZ00202 tuzin; Provisional 95.7 0.054 1.2E-06 51.2 8.6 30 62-91 285-314 (550)
393 TIGR00960 3a0501s02 Type II (G 95.7 0.0098 2.1E-07 49.6 3.5 26 62-87 28-53 (216)
394 PRK06835 DNA replication prote 95.7 0.0088 1.9E-07 54.0 3.3 37 64-100 184-225 (329)
395 cd00157 Rho Rho (Ras homology) 95.7 0.01 2.2E-07 46.7 3.3 23 64-86 1-23 (171)
396 TIGR02673 FtsE cell division A 95.7 0.01 2.2E-07 49.4 3.5 26 62-87 27-52 (214)
397 cd00876 Ras Ras family. The R 95.7 0.008 1.7E-07 46.5 2.6 21 65-85 1-21 (160)
398 cd03225 ABC_cobalt_CbiO_domain 95.7 0.011 2.3E-07 49.1 3.6 26 62-87 26-51 (211)
399 COG1703 ArgK Putative periplas 95.7 0.0099 2.1E-07 53.0 3.5 27 61-87 49-75 (323)
400 PRK11331 5-methylcytosine-spec 95.7 0.009 2E-07 56.1 3.4 27 63-89 194-220 (459)
401 COG3911 Predicted ATPase [Gene 95.7 0.011 2.5E-07 47.9 3.5 28 62-90 8-35 (183)
402 PF13086 AAA_11: AAA domain; P 95.7 0.0097 2.1E-07 49.0 3.2 23 65-87 19-41 (236)
403 PRK09361 radB DNA repair and r 95.7 0.015 3.3E-07 48.8 4.5 35 61-95 21-60 (225)
404 cd01862 Rab7 Rab7 subfamily. 95.7 0.0097 2.1E-07 46.8 3.1 22 65-86 2-23 (172)
405 cd03269 ABC_putative_ATPase Th 95.7 0.011 2.4E-07 49.0 3.5 26 62-87 25-50 (210)
406 TIGR03608 L_ocin_972_ABC putat 95.7 0.011 2.4E-07 48.8 3.4 26 62-87 23-48 (206)
407 cd00879 Sar1 Sar1 subfamily. 95.7 0.012 2.6E-07 47.6 3.6 25 61-85 17-41 (190)
408 COG1126 GlnQ ABC-type polar am 95.7 0.011 2.3E-07 50.7 3.3 24 61-84 26-49 (240)
409 COG3896 Chloramphenicol 3-O-ph 95.7 0.09 1.9E-06 43.2 8.5 132 62-203 22-168 (205)
410 cd03219 ABC_Mj1267_LivG_branch 95.7 0.01 2.2E-07 50.1 3.3 27 61-87 24-50 (236)
411 cd01895 EngA2 EngA2 subfamily. 95.7 0.011 2.4E-07 46.1 3.2 24 63-86 2-25 (174)
412 cd04139 RalA_RalB RalA/RalB su 95.6 0.011 2.4E-07 46.0 3.2 21 65-85 2-22 (164)
413 cd03262 ABC_HisP_GlnQ_permease 95.6 0.012 2.5E-07 48.9 3.5 26 62-87 25-50 (213)
414 PRK07764 DNA polymerase III su 95.6 0.11 2.3E-06 52.5 10.9 29 62-90 36-64 (824)
415 cd03259 ABC_Carb_Solutes_like 95.6 0.012 2.5E-07 49.0 3.5 26 62-87 25-50 (213)
416 COG0467 RAD55 RecA-superfamily 95.6 0.0092 2E-07 51.5 3.0 34 62-95 22-60 (260)
417 cd03261 ABC_Org_Solvent_Resist 95.6 0.011 2.5E-07 49.9 3.5 26 62-87 25-50 (235)
418 cd03256 ABC_PhnC_transporter A 95.6 0.012 2.5E-07 49.9 3.5 27 61-87 25-51 (241)
419 PRK08116 hypothetical protein; 95.6 0.011 2.3E-07 51.8 3.4 36 64-99 115-155 (268)
420 cd03224 ABC_TM1139_LivF_branch 95.6 0.012 2.6E-07 49.2 3.5 27 61-87 24-50 (222)
421 cd03229 ABC_Class3 This class 95.6 0.012 2.7E-07 47.7 3.5 25 62-86 25-49 (178)
422 TIGR02211 LolD_lipo_ex lipopro 95.6 0.012 2.6E-07 49.2 3.5 26 62-87 30-55 (221)
423 cd03263 ABC_subfamily_A The AB 95.6 0.012 2.6E-07 49.1 3.5 26 62-87 27-52 (220)
424 PRK00440 rfc replication facto 95.6 0.013 2.8E-07 51.3 3.9 24 65-88 40-63 (319)
425 cd04145 M_R_Ras_like M-Ras/R-R 95.6 0.014 3E-07 45.6 3.7 24 63-86 2-25 (164)
426 cd03226 ABC_cobalt_CbiO_domain 95.6 0.012 2.6E-07 48.8 3.4 26 62-87 25-50 (205)
427 cd04177 RSR1 RSR1 subgroup. R 95.6 0.012 2.7E-07 46.6 3.4 23 64-86 2-24 (168)
428 cd03116 MobB Molybdenum is an 95.6 0.014 3E-07 47.3 3.7 24 64-87 2-25 (159)
429 cd03247 ABCC_cytochrome_bd The 95.6 0.013 2.8E-07 47.6 3.5 26 62-87 27-52 (178)
430 TIGR03345 VI_ClpV1 type VI sec 95.6 0.014 3E-07 59.0 4.4 42 59-100 591-638 (852)
431 COG0378 HypB Ni2+-binding GTPa 95.6 0.013 2.9E-07 49.2 3.6 32 63-94 13-48 (202)
432 COG4619 ABC-type uncharacteriz 95.6 0.012 2.6E-07 48.9 3.3 26 61-86 27-52 (223)
433 TIGR02782 TrbB_P P-type conjug 95.6 0.014 3.1E-07 51.9 4.0 37 63-99 132-173 (299)
434 TIGR02928 orc1/cdc6 family rep 95.6 0.012 2.7E-07 52.7 3.7 26 62-87 39-64 (365)
435 cd03258 ABC_MetN_methionine_tr 95.6 0.012 2.7E-07 49.6 3.5 27 61-87 29-55 (233)
436 PRK13541 cytochrome c biogenes 95.6 0.013 2.8E-07 48.3 3.5 26 62-87 25-50 (195)
437 cd01123 Rad51_DMC1_radA Rad51_ 95.6 0.016 3.4E-07 48.8 4.1 26 61-86 17-42 (235)
438 TIGR02315 ABC_phnC phosphonate 95.6 0.012 2.7E-07 49.8 3.5 26 62-87 27-52 (243)
439 CHL00095 clpC Clp protease ATP 95.6 0.012 2.6E-07 59.1 3.9 39 59-97 534-578 (821)
440 COG4240 Predicted kinase [Gene 95.6 0.014 3E-07 50.6 3.7 41 61-101 48-94 (300)
441 cd01128 rho_factor Transcripti 95.6 0.014 3E-07 50.7 3.8 30 61-90 14-43 (249)
442 KOG0736 Peroxisome assembly fa 95.6 0.012 2.5E-07 58.4 3.6 40 63-102 705-746 (953)
443 cd03257 ABC_NikE_OppD_transpor 95.5 0.012 2.7E-07 49.2 3.4 27 61-87 29-55 (228)
444 cd03296 ABC_CysA_sulfate_impor 95.5 0.013 2.8E-07 49.8 3.5 26 62-87 27-52 (239)
445 cd03293 ABC_NrtD_SsuB_transpor 95.5 0.012 2.7E-07 49.2 3.3 26 62-87 29-54 (220)
446 TIGR00176 mobB molybdopterin-g 95.5 0.012 2.6E-07 47.3 3.1 22 66-87 2-23 (155)
447 cd03235 ABC_Metallic_Cations A 95.5 0.012 2.6E-07 49.0 3.2 26 62-87 24-49 (213)
448 PF00437 T2SE: Type II/IV secr 95.5 0.015 3.2E-07 50.3 3.9 34 63-96 127-163 (270)
449 COG3839 MalK ABC-type sugar tr 95.5 0.012 2.7E-07 53.3 3.5 32 62-96 28-59 (338)
450 cd03260 ABC_PstB_phosphate_tra 95.5 0.014 3E-07 49.1 3.6 26 62-87 25-50 (227)
451 PRK11629 lolD lipoprotein tran 95.5 0.013 2.9E-07 49.5 3.5 26 62-87 34-59 (233)
452 cd04115 Rab33B_Rab33A Rab33B/R 95.5 0.015 3.2E-07 46.4 3.5 23 63-85 2-24 (170)
453 KOG0991 Replication factor C, 95.5 0.012 2.6E-07 51.2 3.2 27 61-87 46-72 (333)
454 cd04137 RheB Rheb (Ras Homolog 95.5 0.014 2.9E-07 46.8 3.4 23 64-86 2-24 (180)
455 TIGR02397 dnaX_nterm DNA polym 95.5 0.017 3.8E-07 51.5 4.4 29 62-90 35-63 (355)
456 PRK11264 putative amino-acid A 95.5 0.014 2.9E-07 49.9 3.5 27 61-87 27-53 (250)
457 cd03265 ABC_DrrA DrrA is the A 95.5 0.014 3E-07 48.9 3.5 26 62-87 25-50 (220)
458 PF00025 Arf: ADP-ribosylation 95.5 0.015 3.2E-07 47.2 3.6 25 61-85 12-36 (175)
459 cd03232 ABC_PDR_domain2 The pl 95.5 0.013 2.9E-07 48.2 3.4 25 61-85 31-55 (192)
460 PRK10247 putative ABC transpor 95.5 0.014 3E-07 49.2 3.5 25 62-86 32-56 (225)
461 cd03223 ABCD_peroxisomal_ALDP 95.5 0.015 3.2E-07 46.9 3.5 27 61-87 25-51 (166)
462 cd03230 ABC_DR_subfamily_A Thi 95.5 0.014 3.1E-07 47.1 3.5 26 62-87 25-50 (173)
463 cd03218 ABC_YhbG The ABC trans 95.5 0.014 3E-07 49.1 3.5 26 62-87 25-50 (232)
464 TIGR01978 sufC FeS assembly AT 95.5 0.014 3E-07 49.5 3.4 26 61-86 24-49 (243)
465 TIGR03864 PQQ_ABC_ATP ABC tran 95.5 0.014 3.1E-07 49.4 3.5 26 62-87 26-51 (236)
466 cd01867 Rab8_Rab10_Rab13_like 95.5 0.016 3.6E-07 45.8 3.7 24 63-86 3-26 (167)
467 cd03228 ABCC_MRP_Like The MRP 95.5 0.015 3.3E-07 46.9 3.5 27 61-87 26-52 (171)
468 PRK14250 phosphate ABC transpo 95.5 0.014 3.1E-07 49.7 3.5 26 62-87 28-53 (241)
469 cd01860 Rab5_related Rab5-rela 95.5 0.014 3.1E-07 45.5 3.3 23 64-86 2-24 (163)
470 cd03246 ABCC_Protease_Secretio 95.5 0.016 3.4E-07 46.9 3.6 26 62-87 27-52 (173)
471 PRK13540 cytochrome c biogenes 95.5 0.015 3.3E-07 48.1 3.5 27 61-87 25-51 (200)
472 TIGR03410 urea_trans_UrtE urea 95.5 0.014 3.1E-07 49.1 3.4 26 62-87 25-50 (230)
473 PRK11124 artP arginine transpo 95.4 0.015 3.1E-07 49.5 3.5 26 62-87 27-52 (242)
474 cd03215 ABC_Carb_Monos_II This 95.4 0.015 3.2E-07 47.5 3.4 26 62-87 25-50 (182)
475 TIGR02323 CP_lyasePhnK phospho 95.4 0.014 3E-07 50.0 3.4 26 62-87 28-53 (253)
476 cd03250 ABCC_MRP_domain1 Domai 95.4 0.015 3.3E-07 48.1 3.5 27 61-87 29-55 (204)
477 PTZ00035 Rad51 protein; Provis 95.4 0.063 1.4E-06 48.6 7.8 26 61-86 116-141 (337)
478 cd03268 ABC_BcrA_bacitracin_re 95.4 0.015 3.3E-07 48.1 3.5 26 62-87 25-50 (208)
479 PRK14490 putative bifunctional 95.4 0.017 3.6E-07 52.8 4.0 29 61-89 3-31 (369)
480 PRK14247 phosphate ABC transpo 95.4 0.015 3.2E-07 49.7 3.5 26 62-87 28-53 (250)
481 PRK10463 hydrogenase nickel in 95.4 0.017 3.8E-07 51.3 4.0 27 61-87 102-128 (290)
482 PRK10771 thiQ thiamine transpo 95.4 0.015 3.2E-07 49.2 3.4 27 61-87 23-49 (232)
483 PHA03133 thymidine kinase; Pro 95.4 0.48 1E-05 43.4 13.3 29 61-89 38-66 (368)
484 cd03214 ABC_Iron-Siderophores_ 95.4 0.016 3.5E-07 47.1 3.5 27 61-87 23-49 (180)
485 PRK10865 protein disaggregatio 95.4 0.017 3.6E-07 58.5 4.3 41 59-99 593-639 (857)
486 cd03254 ABCC_Glucan_exporter_l 95.4 0.015 3.3E-07 48.8 3.5 26 62-87 28-53 (229)
487 COG1136 SalX ABC-type antimicr 95.4 0.016 3.4E-07 49.8 3.5 25 61-85 29-53 (226)
488 cd03251 ABCC_MsbA MsbA is an e 95.4 0.015 3.4E-07 48.9 3.5 26 62-87 27-52 (234)
489 PRK11701 phnK phosphonate C-P 95.4 0.015 3.2E-07 50.1 3.4 27 61-87 30-56 (258)
490 PRK14242 phosphate transporter 95.4 0.015 3.3E-07 49.7 3.4 27 61-87 30-56 (253)
491 PRK05642 DNA replication initi 95.4 0.016 3.4E-07 49.6 3.5 36 64-99 46-86 (234)
492 cd01864 Rab19 Rab19 subfamily. 95.4 0.017 3.7E-07 45.5 3.4 23 63-85 3-25 (165)
493 cd03216 ABC_Carb_Monos_I This 95.4 0.017 3.6E-07 46.5 3.4 26 61-86 24-49 (163)
494 cd03253 ABCC_ATM1_transporter 95.4 0.016 3.5E-07 48.9 3.5 26 62-87 26-51 (236)
495 PRK14262 phosphate ABC transpo 95.4 0.016 3.4E-07 49.5 3.5 25 62-86 28-52 (250)
496 PRK10908 cell division protein 95.4 0.017 3.6E-07 48.5 3.5 27 61-87 26-52 (222)
497 TIGR02770 nickel_nikD nickel i 95.4 0.016 3.4E-07 49.0 3.4 26 62-87 11-36 (230)
498 PRK10744 pstB phosphate transp 95.4 0.016 3.4E-07 50.0 3.5 27 61-87 37-63 (260)
499 PRK07994 DNA polymerase III su 95.3 0.015 3.2E-07 57.0 3.6 29 62-90 37-65 (647)
500 cd03114 ArgK-like The function 95.3 0.014 3.1E-07 46.4 3.0 22 66-87 2-23 (148)
No 1
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=3.7e-33 Score=241.89 Aligned_cols=140 Identities=46% Similarity=0.691 Sum_probs=131.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
++++|+|+|||||||||+|+.|+++||++||++++++|+++..++++++.+++++++|.++|++++..++.++|.+....
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~ 107 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE 107 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999874223
Q ss_pred CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccccc
Q 027791 142 GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWLC 208 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~ 208 (219)
...|||||||||+..|++.|+....++.||+|+++++++ ++|+.+|++|+.||+.||..+
T Consensus 108 ~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l-------~~Rl~gR~~~~~~g~~Yn~~~ 167 (261)
T PLN02459 108 GESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVL-------VEKCLGRRICSECGKNFNVAD 167 (261)
T ss_pred CCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHH-------HHHhhccccccccCccccccc
Confidence 468999999999999999999887899999999999999 999999999999999999875
No 2
>PLN02674 adenylate kinase
Probab=100.00 E-value=3.8e-33 Score=240.22 Aligned_cols=146 Identities=20% Similarity=0.267 Sum_probs=133.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
++++|+|+|+|||||||+|++|+++||++|||+||++|+++..++++|+.+++++++|+++|++++..++.+++.+..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~-- 107 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-- 107 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcC--
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc---------
Q 027791 142 GESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL--------- 207 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~--------- 207 (219)
...|||+|||||+..|++.|+.. ..+|.||+|++|++++ ++|+..|++|+.||+.||..
T Consensus 108 ~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l-------~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~ 180 (244)
T PLN02674 108 CQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAIL-------EERITGRWIHPSSGRTYHTKFAPPKVPGV 180 (244)
T ss_pred cCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHhccccccccCCccccccCCCcccCc
Confidence 35899999999999999998764 3699999999999999 99999999999999998876
Q ss_pred chhhhhhhh
Q 027791 208 CRKFLIKLW 216 (219)
Q Consensus 208 ~~~~~~~~~ 216 (219)
|..||..|+
T Consensus 181 ~~~~g~~L~ 189 (244)
T PLN02674 181 DDVTGEPLI 189 (244)
T ss_pred ccccCCccc
Confidence 455666654
No 3
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=5.9e-32 Score=231.16 Aligned_cols=139 Identities=29% Similarity=0.478 Sum_probs=129.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
.+++|+|+|||||||||+|+.|+++||++||++|+++|++...++++++.+++++++|.++|++++..++.+++.+....
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 84 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD 84 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence 56889999999999999999999999999999999999999888999999999999999999999999999999872112
Q ss_pred CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791 142 GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL 207 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~ 207 (219)
...|||+||||++..|++.|+....++.||+|+++++++ ++|+.+|++|+.||+.||..
T Consensus 85 ~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~-------~~Rl~~Rr~~~~~g~~y~~~ 143 (229)
T PTZ00088 85 CFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNIL-------IKKLLGRRICNTCNRNFNIA 143 (229)
T ss_pred cCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHH-------HHHHHcCcCCCccCCcceec
Confidence 467999999999999999998777899999999999999 99999999999999999873
No 4
>PRK14529 adenylate kinase; Provisional
Probab=99.98 E-value=7.8e-32 Score=229.44 Aligned_cols=142 Identities=23% Similarity=0.402 Sum_probs=129.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
|+|+|+|+|||||||+++.|+++|+++|||+++++|++...++++++++++++.+|.++|++++..++.+++.+. . .
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~--~-~ 77 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQD--G-K 77 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhcc--C-C
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999875 2 7
Q ss_pred CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccc-----------cc
Q 027791 144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTG-----------WL 207 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~-----------~~ 207 (219)
.|||||||||+.+|++.|+.. ..||.||+|++|++++ ++|+..|++|+.||+.|+ -.
T Consensus 78 ~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l-------~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~ 150 (223)
T PRK14529 78 NGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVA-------KNRIMGRRLCKNDNNHPNNIFIDAIKPDGDV 150 (223)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHhhCCccccccCCcccccccCCCcccCCc
Confidence 899999999999999998754 3699999999999999 999999999999987542 15
Q ss_pred chhhhhhh
Q 027791 208 CRKFLIKL 215 (219)
Q Consensus 208 ~~~~~~~~ 215 (219)
|-.||..|
T Consensus 151 cd~~~~~l 158 (223)
T PRK14529 151 CRVCGGEL 158 (223)
T ss_pred CcCcCCcc
Confidence 77788765
No 5
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.97 E-value=9.8e-31 Score=219.76 Aligned_cols=135 Identities=29% Similarity=0.463 Sum_probs=126.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCC
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~ 144 (219)
+|+|+|+|||||||+|+.|+++||++||+++|++|+++...++.++.+++++.+|..+|++++..++.+++.+... ...
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~-~~~ 79 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD-NEN 79 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc-cCC
Confidence 4899999999999999999999999999999999999998999999999999999999999999999999987432 367
Q ss_pred eEEEeCccCCHHHHHHHHhhC--CCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791 145 GFILDGIPRTRIQAVSLEFCY--TMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL 207 (219)
Q Consensus 145 g~IlDG~Pr~~~qa~~l~~~~--~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~ 207 (219)
+|||||||++..|++.|+... .++.+|+|++|++++ ++|+.+|++|+.||+.||..
T Consensus 80 ~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~-------~~Rl~~R~~~~~~g~~y~~~ 137 (210)
T TIGR01351 80 GFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEEL-------VERLSGRRICPSCGRVYHLK 137 (210)
T ss_pred cEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHH-------HHHHHCCCccCCcCCccccc
Confidence 999999999999999998765 489999999999999 99999999999999999877
No 6
>PRK14526 adenylate kinase; Provisional
Probab=99.97 E-value=2.1e-30 Score=219.06 Aligned_cols=143 Identities=27% Similarity=0.409 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
|+|+|+|+|||||||+++.|++.++++|+++|+++|++...+++.++.+++++++|.++|++++..++.+++.... ..
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~--~~ 78 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIK--NN 78 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhccc--cc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999998753 36
Q ss_pred CeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc---------chhhhhh
Q 027791 144 SGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL---------CRKFLIK 214 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~---------~~~~~~~ 214 (219)
.+||||||||+.+|++.|+.......+|+|++|++++ ++|+.+|++|+.||+.||.. |-.|+..
T Consensus 79 ~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~-------~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 151 (211)
T PRK14526 79 DNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELL-------IKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGD 151 (211)
T ss_pred CcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHH-------HHHHHCCCcccccCCccccccCCCCccCcCCCCCCe
Confidence 7999999999999999998865545788999999999 99999999999999999865 6666654
Q ss_pred h
Q 027791 215 L 215 (219)
Q Consensus 215 ~ 215 (219)
|
T Consensus 152 l 152 (211)
T PRK14526 152 L 152 (211)
T ss_pred e
Confidence 3
No 7
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.97 E-value=1.2e-29 Score=213.86 Aligned_cols=135 Identities=25% Similarity=0.437 Sum_probs=125.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
|+|+|+|+|||||||+|+.||++||++|++++|++++++..+++.++.+++++.+|..+|++++..++.+++.+.. ..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~--~~ 78 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPD--CK 78 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccC--cc
Confidence 5799999999999999999999999999999999999999889999999999999999999999999999998753 34
Q ss_pred CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791 144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL 207 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~ 207 (219)
.||||||||++.+|++.|++. ..++.+|+|+++++++ ++|+.+|.+|+.||++||..
T Consensus 79 ~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~-------~~Rl~~R~~~~~~g~~~~~~ 140 (215)
T PRK00279 79 NGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEEL-------VERLSGRRICPACGRTYHVK 140 (215)
T ss_pred CCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHH-------HHHHhCCcccCccCCccccc
Confidence 599999999999999999643 3688999999999999 99999999999999999876
No 8
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.95 E-value=7e-28 Score=197.37 Aligned_cols=131 Identities=22% Similarity=0.359 Sum_probs=120.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCC-CchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhc
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~-~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~ 138 (219)
+..+..|+|+|.|||||.|||.+++++||+.|+|+|||+|++... +++.|.+|++++++|..+|.+++..||+++|.+.
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~ 84 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS 84 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999999999998 8999999999999999999999999999999875
Q ss_pred cccCCCeEEEeCccCCHHHHHHHHhhC--CCcEEEEEEeChhhhcccccchhhhhhcCCCCCC
Q 027791 139 YYRGESGFILDGIPRTRIQAVSLEFCY--TMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLT 199 (219)
Q Consensus 139 ~~~~~~g~IlDG~Pr~~~qa~~l~~~~--~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~ 199 (219)
...++|+||||||+.+|+..|+... .+++|++|+|++|++ ++|+..|.....
T Consensus 85 --~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~-------l~Rll~R~q~~~ 138 (195)
T KOG3079|consen 85 --GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETM-------LKRLLHRGQSNS 138 (195)
T ss_pred --CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHH-------HHHHHhhcccCC
Confidence 2345699999999999999998765 589999999999999 999999986643
No 9
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.95 E-value=1.4e-27 Score=190.48 Aligned_cols=117 Identities=36% Similarity=0.531 Sum_probs=105.5
Q ss_pred EEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCCeEE
Q 027791 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFI 147 (219)
Q Consensus 68 l~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~g~I 147 (219)
|+|||||||||+|++||++||+.||++++++|+++...++.++++++++.+|+.+|++++..++..++.+. ....|||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~--~~~~g~i 78 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP--PCNRGFI 78 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG--GTTTEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh--cccceee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999986 3478999
Q ss_pred EeCccCCHHHHHHHHh-----hCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791 148 LDGIPRTRIQAVSLEF-----CYTMALAFLFLFLYGCCVIIGSVILNEQVD 193 (219)
Q Consensus 148 lDG~Pr~~~qa~~l~~-----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~ 193 (219)
|||||++.+|++.|+. ...|+.||+|+++++++ .+|+.+
T Consensus 79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~-------~~R~~~ 122 (151)
T PF00406_consen 79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETL-------IERLSQ 122 (151)
T ss_dssp EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHH-------HHHHHT
T ss_pred eeeccccHHHHHHHHHHHhhcccchheeeccccchhhh-------hhhccc
Confidence 9999999999999987 45789999999999999 999876
No 10
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.95 E-value=5e-27 Score=192.96 Aligned_cols=139 Identities=29% Similarity=0.408 Sum_probs=126.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCC
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~ 144 (219)
+|+|+|+|||||||+|+.|+++||++||++++++++.+...++.++.+.+++.+|..+|++++..++..++.+.. ...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~--~~~ 78 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPD--CKK 78 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc--ccC
Confidence 489999999999999999999999999999999999998888999999999999999999999999999998653 457
Q ss_pred eEEEeCccCCHHHHHHHHhhC----CCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccc-cchhhh
Q 027791 145 GFILDGIPRTRIQAVSLEFCY----TMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGW-LCRKFL 212 (219)
Q Consensus 145 g~IlDG~Pr~~~qa~~l~~~~----~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~-~~~~~~ 212 (219)
+||+||||++..|++.|.... .++.+|+|++|++++ ++|+.+|..|+.||++||. .|..|+
T Consensus 79 ~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~-------~~Rl~~R~~~~~~~~~~~~~~~~~~~ 144 (194)
T cd01428 79 GFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVL-------IERILGRRICPVSGRVYHLGKDDVTG 144 (194)
T ss_pred CEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHHcCCcCCCcCCcCCcCCCcccC
Confidence 899999999999999997654 789999999999999 9999999999999999995 444443
No 11
>PRK13808 adenylate kinase; Provisional
Probab=99.95 E-value=4.3e-27 Score=210.33 Aligned_cols=125 Identities=26% Similarity=0.424 Sum_probs=116.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
|+|+|+|||||||||+|++|+++||++||++||++|+++..+++.+..+.+++.+|.++|++++..++.++|.+.. ..
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~--~~ 78 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPD--AA 78 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhccc--cc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999998764 36
Q ss_pred CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791 144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC 197 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~ 197 (219)
.||||||||++.+|++.|++. ..||+||+|++|++++ ++|+.+|+.+
T Consensus 79 ~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evl-------l~Rl~~R~~~ 130 (333)
T PRK13808 79 NGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGAL-------LARVETRVAE 130 (333)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHH-------HHHHHcCccc
Confidence 799999999999999998764 3699999999999999 9999999765
No 12
>PRK14530 adenylate kinase; Provisional
Probab=99.95 E-value=8.2e-27 Score=196.58 Aligned_cols=141 Identities=23% Similarity=0.376 Sum_probs=122.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc-----CCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-----SPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~-----~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~ 137 (219)
.++|+|+|+|||||||+++.|+++||++||+++++++++. ...+..+. +++.+..|..+|++++..++.+.+.+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~ 81 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD 81 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 3479999999999999999999999999999999999987 23344554 67788999999999999999888754
Q ss_pred ccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc---------c
Q 027791 138 GYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL---------C 208 (219)
Q Consensus 138 ~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~---------~ 208 (219)
..+||+||||++.+|++.|+....++.||+|++|++++ ++|+.+|.+|+.||..|++. |
T Consensus 82 -----~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l-------~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~ 149 (215)
T PRK14530 82 -----ADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEEL-------VDRLTGRRVCPDCGANYHVEFNQPEEEGVC 149 (215)
T ss_pred -----CCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHH-------HHHHhCCCcCcccCCccccCCCCCcccccC
Confidence 35899999999999999998777799999999999999 99999999999999988744 6
Q ss_pred hhhhhhhh
Q 027791 209 RKFLIKLW 216 (219)
Q Consensus 209 ~~~~~~~~ 216 (219)
..||..|+
T Consensus 150 ~~~~~rl~ 157 (215)
T PRK14530 150 DECGGELI 157 (215)
T ss_pred cccCCccc
Confidence 66766554
No 13
>PRK14532 adenylate kinase; Provisional
Probab=99.94 E-value=4.1e-26 Score=187.86 Aligned_cols=125 Identities=24% Similarity=0.377 Sum_probs=113.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
|+|+|+|+|||||||+|++||+++|++||++||++|+++..+++.++.++++++.|+.+|++++..++.+++.... .+
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~ 78 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAE--AA 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcC--cc
Confidence 4699999999999999999999999999999999999998889999999999999999999999999999887653 46
Q ss_pred CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791 144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC 197 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~ 197 (219)
.|||+||||++.+|++.+... ..||.+|+|++|++++ ++|+.+|..+
T Consensus 79 ~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~-------~~Rl~~R~~~ 130 (188)
T PRK14532 79 GGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEAL-------IERIVKRFEE 130 (188)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHHcCcCc
Confidence 799999999999999988643 3689999999999999 9999988643
No 14
>PRK14531 adenylate kinase; Provisional
Probab=99.94 E-value=8.8e-26 Score=186.04 Aligned_cols=124 Identities=27% Similarity=0.419 Sum_probs=112.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
.++|+++|+|||||||+|+.|+++||++||+++|++|+++..++++++.+++++.+|..+|++++..++.+++.+. .
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~---~ 78 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL---N 78 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc---c
Confidence 3579999999999999999999999999999999999999989999999999999999999999999999888763 3
Q ss_pred CCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 143 ESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 143 ~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
+.+|||||||++..|++.++.. ..++.||+|++|++++ .+|+.+|..
T Consensus 79 ~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l-------~~Rl~~R~r 130 (183)
T PRK14531 79 SGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVL-------IERLLARGR 130 (183)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHH-------HHHhhcCCC
Confidence 5789999999999999988754 2578999999999999 999998843
No 15
>PRK14528 adenylate kinase; Provisional
Probab=99.93 E-value=2.5e-25 Score=184.27 Aligned_cols=126 Identities=27% Similarity=0.439 Sum_probs=115.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
.+|+|+|+|||||||+|+.|+++||++|+++++++++++..+++++..++.++.+|.++|++++..++.+++.+.. ..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~--~~ 79 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREAD--CK 79 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcC--cc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999998763 35
Q ss_pred CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCC
Q 027791 144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCL 198 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~ 198 (219)
.+||+||||++.+|++.|++. ..+|.||+|++|++++ ++|+.+|..+.
T Consensus 80 ~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~-------~~Rl~~R~~~~ 132 (186)
T PRK14528 80 NGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGEL-------LKRLLGRAEIE 132 (186)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHhcCcccc
Confidence 789999999999999998764 3699999999999999 99999997653
No 16
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.93 E-value=5.7e-26 Score=193.33 Aligned_cols=137 Identities=35% Similarity=0.468 Sum_probs=128.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
++.+++++|+||+||+|++.++++.|++.|++++|++|+++..++++++++++++++|+++||++++.++.++++.. .
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~--~ 91 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENP--R 91 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcccc--c
Confidence 68999999999999999999999999999999999999999999999999999999999999999999888888776 4
Q ss_pred CCCeEEEeCccCCHHHHHHHHh-hCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791 142 GESGFILDGIPRTRIQAVSLEF-CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL 207 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~ 207 (219)
.+.+|++||||++..|++.+.. ...+|.||.|++|++.+ ++|+..|++|+.||+.||..
T Consensus 92 ~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L-------~~ri~~r~ihp~sG~~Yh~~ 151 (235)
T KOG3078|consen 92 CQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVL-------VDRITGRRIHPASGRVYHLE 151 (235)
T ss_pred cccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHH-------HHHHhcccccCcccceeccc
Confidence 6789999999999998888654 56899999999999999 99999999999999999964
No 17
>PLN02842 nucleotide kinase
Probab=99.93 E-value=1.5e-25 Score=209.28 Aligned_cols=133 Identities=26% Similarity=0.341 Sum_probs=123.3
Q ss_pred EEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCCeE
Q 027791 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGF 146 (219)
Q Consensus 67 vl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~g~ 146 (219)
+|+|+|||||||+|++|+++|++.||+++++++++.+.++++|+.+++++++|+.+|++++..++.+++++..+ ...||
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~-~~~G~ 79 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDA-KEKGW 79 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccc-cCCcE
Confidence 37999999999999999999999999999999999999999999999999999999999999999999987532 35789
Q ss_pred EEeCccCCHHHHHHHHhhC-CCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791 147 ILDGIPRTRIQAVSLEFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL 207 (219)
Q Consensus 147 IlDG~Pr~~~qa~~l~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~ 207 (219)
||||||++..|++.|+... .||+||+|+++++++ ++|+.+|..|+.||..||..
T Consensus 80 ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevl-------leRl~gR~~dp~tG~iYh~~ 134 (505)
T PLN02842 80 LLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEIL-------IDRCVGRRLDPVTGKIYHIK 134 (505)
T ss_pred EEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHH-------HHHHhccccccccCCccccc
Confidence 9999999999999887653 699999999999999 99999999999999999875
No 18
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.93 E-value=6.2e-25 Score=179.57 Aligned_cols=123 Identities=22% Similarity=0.391 Sum_probs=111.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCC
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~ 144 (219)
.|+|+|+|||||||+|+.|++++|++||+++|++|+++..+++.++.+++++.+|..+|++++..++.+++... ...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~---~~~ 77 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQAD---GSK 77 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc---CCC
Confidence 37899999999999999999999999999999999999888899999999999999999999999999888764 267
Q ss_pred eEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791 145 GFILDGIPRTRIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC 197 (219)
Q Consensus 145 g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~ 197 (219)
+|||||||++..|++.+... ..||.+|+|++|++++ ++|+.+|...
T Consensus 78 ~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~-------~~Rl~~R~~~ 127 (183)
T TIGR01359 78 KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVM-------IKRLLKRGQS 127 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHhcCCcc
Confidence 89999999999999887643 3689999999999999 9999999754
No 19
>PLN02200 adenylate kinase family protein
Probab=99.92 E-value=2.1e-24 Score=185.02 Aligned_cols=127 Identities=24% Similarity=0.421 Sum_probs=115.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~ 139 (219)
...+++|+|+|+|||||||+|+.|+++||++||+++|++|+++...++.+..+.+.+++|..+|++++..++.+++...
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~- 118 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS- 118 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC-
Confidence 4567899999999999999999999999999999999999999888899999999999999999999999999888754
Q ss_pred ccCCCeEEEeCccCCHHHHHHHHhh--CCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 140 YRGESGFILDGIPRTRIQAVSLEFC--YTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 140 ~~~~~g~IlDG~Pr~~~qa~~l~~~--~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
.+.+|||||||++..|+..|+.. ..||.+|+|+++++++ .+|+.+|..
T Consensus 119 --~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~-------~~Rl~~R~~ 168 (234)
T PLN02200 119 --DNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEM-------VKRVLNRNQ 168 (234)
T ss_pred --CCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHH-------HHHHHcCcC
Confidence 35689999999999999988765 3699999999999999 999999863
No 20
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.92 E-value=1.8e-24 Score=178.53 Aligned_cols=124 Identities=29% Similarity=0.540 Sum_probs=115.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
++|+|+|+|||||||+|+.|+++++++|+|+++++|......++++++++.++++|+++|++++..++..++.+.++ .
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~--~ 78 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADC--K 78 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcc--c
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999988753 2
Q ss_pred CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
.+||+||||++..|++.++.. ..+|.++.++++++.+ ++|+..|.+
T Consensus 79 ~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~-------~~r~~~r~~ 129 (178)
T COG0563 79 AGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELL-------LERLLGRRV 129 (178)
T ss_pred CeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHH-------HHHHhCccc
Confidence 399999999999999999864 4789999999999999 999999965
No 21
>PRK02496 adk adenylate kinase; Provisional
Probab=99.92 E-value=2.3e-24 Score=176.99 Aligned_cols=124 Identities=26% Similarity=0.429 Sum_probs=113.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
+++|+|+|+|||||||+++.|+++||++|++++++++++...+++.+..+++++.+|..+|++++..++.+++.+.. .
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~--~ 78 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPD--A 78 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcC--c
Confidence 36899999999999999999999999999999999999998889999999999999999999999999999997653 3
Q ss_pred CCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 143 ESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 143 ~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
..|||+||||++..|++.++.. ..|+.+|+|+++++++ ++|+.+|.
T Consensus 79 ~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~-------~~Rl~~R~ 129 (184)
T PRK02496 79 ANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVV-------VERLLARG 129 (184)
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH-------HHHHhcCC
Confidence 5789999999999999888653 2689999999999999 99999884
No 22
>PRK14527 adenylate kinase; Provisional
Probab=99.91 E-value=1.6e-23 Score=173.42 Aligned_cols=128 Identities=23% Similarity=0.348 Sum_probs=115.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~ 140 (219)
.++..|+|+|+|||||||+++.|+++||++|++++++++++...++++++.+.+++.+|..+|++++..++.+++.+..
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~- 82 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME- 82 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-
Confidence 3568899999999999999999999999999999999999998889999999999999999999999999999987653
Q ss_pred cCCCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCC
Q 027791 141 RGESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCL 198 (219)
Q Consensus 141 ~~~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~ 198 (219)
..+||+||||++..|++.++.. ..++.||+|++|++++ ++|+.+|..+.
T Consensus 83 --~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~-------~~Rl~~R~~~~ 136 (191)
T PRK14527 83 --PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEEL-------IRRIVERARQE 136 (191)
T ss_pred --CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHH-------HHHHHcCcccC
Confidence 3579999999999999888653 3578899999999999 99999997653
No 23
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.88 E-value=6e-22 Score=161.75 Aligned_cols=126 Identities=24% Similarity=0.373 Sum_probs=111.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
....|+|+|+|||||||+++.|++++|+.|+++|++++++....++.++.++..+.++..+|++.+...+..++.... .
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 80 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAAL-G 80 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccc-C
Confidence 346789999999999999999999999999999999999887777888889999999999999998888888876543 3
Q ss_pred CCCeEEEeCccCCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 142 GESGFILDGIPRTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
.+.+||+||||++..|++.+... ..||.+|+|++|++++ ++|+.+|.
T Consensus 81 ~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~-------~~Rl~~R~ 128 (188)
T TIGR01360 81 TSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTM-------VKRLLKRA 128 (188)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHH-------HHHHHccc
Confidence 46789999999999999988654 4689999999999999 99999885
No 24
>PRK01184 hypothetical protein; Provisional
Probab=99.65 E-value=2.8e-15 Score=122.86 Aligned_cols=117 Identities=14% Similarity=0.225 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCC-Cc-----hhHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RS-----ALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~-~s-----~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~ 137 (219)
+.|+|+|+|||||||+++ +++++|+++++++|++|+++.. +. .+++.+.+... .+.++.+..++.+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK---ELGMDAVAKRTVPKIRE 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH---HHChHHHHHHHHHHHHh
Confidence 578999999999999987 7899999999999999998632 22 23444443322 12233444455555554
Q ss_pred ccccCCCeEEEeCccCCHHHHHHHHhhCC-CcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 138 GYYRGESGFILDGIPRTRIQAVSLEFCYT-MALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 138 ~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~-pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
.+...+|+||+ ++..|.+.+..... +..+|++++|+++. ++|+.+|.
T Consensus 78 ---~~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~-------~~Rl~~R~ 125 (184)
T PRK01184 78 ---KGDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVR-------FERLKKRG 125 (184)
T ss_pred ---cCCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHH-------HHHHHHcC
Confidence 24567999999 78888888766543 66899999999999 99999885
No 25
>PRK08356 hypothetical protein; Provisional
Probab=99.62 E-value=3.5e-15 Score=124.04 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=87.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCC----Cc---hhHHH----HHHHHHcCCcccH----HH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP----RS---ALYKQ----IANAVNEGKLVPE----DV 126 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~----~s---~lg~~----i~~~l~~g~~ip~----e~ 126 (219)
+.+.|+|+|||||||||+|+.|+ ++|+++|++++.++..... .+ ..+.. ..++++.|..+++ ++
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 34789999999999999999995 5999999999966543322 11 12212 1355666666664 56
Q ss_pred HHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC 197 (219)
Q Consensus 127 i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~ 197 (219)
+.+++.+++.. ...|++||+ ++..|++.|... ...+|++++|++++ .+|+.+|...
T Consensus 83 ~~~~~~~~~~~-----~~~ividG~-r~~~q~~~l~~~--~~~vi~l~~~~~~~-------~~Rl~~R~~~ 138 (195)
T PRK08356 83 LIRLAVDKKRN-----CKNIAIDGV-RSRGEVEAIKRM--GGKVIYVEAKPEIR-------FERLRRRGAE 138 (195)
T ss_pred HHHHHHHHhcc-----CCeEEEcCc-CCHHHHHHHHhc--CCEEEEEECCHHHH-------HHHHHhcCCc
Confidence 66666555532 235999999 999999998763 35899999999999 9999988643
No 26
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.58 E-value=3.8e-15 Score=119.00 Aligned_cols=129 Identities=18% Similarity=0.206 Sum_probs=96.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~ 140 (219)
+..++|+|+|.||+||||+|++||+.+|+++|.++|++++.- +.....+.. +-..+.++-+.+-|.+.+.+
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~-----l~~gyDE~y-~c~i~DEdkv~D~Le~~m~~--- 75 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN-----LYEGYDEEY-KCHILDEDKVLDELEPLMIE--- 75 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc-----chhcccccc-cCccccHHHHHHHHHHHHhc---
Confidence 456789999999999999999999999999999999998742 111110100 11245566666667777754
Q ss_pred cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccccchhhhhhh
Q 027791 141 RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWLCRKFLIKL 215 (219)
Q Consensus 141 ~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~ 215 (219)
.|.|+|-+-... |.+ -.+|+||.|.+|.+++ .+||..|.++. ..-..|+.|.+||..+
T Consensus 76 ---Gg~IVDyHgCd~-----Fpe-rwfdlVvVLr~~~s~L-------Y~RL~sRgY~e-~Ki~eNiecEIfgv~~ 133 (176)
T KOG3347|consen 76 ---GGNIVDYHGCDF-----FPE-RWFDLVVVLRTPNSVL-------YDRLKSRGYSE-KKIKENIECEIFGVVL 133 (176)
T ss_pred ---CCcEEeecccCc-----cch-hheeEEEEEecCchHH-------HHHHHHcCCCH-HHHhhhcchHHHHHHH
Confidence 478998442211 111 2589999999999999 99999999887 5778999999999865
No 27
>PRK06217 hypothetical protein; Validated
Probab=99.58 E-value=1.2e-14 Score=119.54 Aligned_cols=108 Identities=16% Similarity=0.194 Sum_probs=78.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
+++|+|+|+|||||||+++.|++++|++|+++|++++... +++.. ...+.+....++.+.+..
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~----- 63 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT--DPPFT----------TKRPPEERLRLLLEDLRP----- 63 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC--CCCcc----------ccCCHHHHHHHHHHHHhc-----
Confidence 3689999999999999999999999999999999887532 21111 112344444444444432
Q ss_pred CCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCC
Q 027791 143 ESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCL 198 (219)
Q Consensus 143 ~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~ 198 (219)
+.+||+||++... .+.+. ..+|.+|+|++|.+++ ++|+.+|..+.
T Consensus 64 ~~~~vi~G~~~~~--~~~~~--~~~d~~i~Ld~~~~~~-------~~Rl~~R~~~~ 108 (183)
T PRK06217 64 REGWVLSGSALGW--GDPLE--PLFDLVVFLTIPPELR-------LERLRLREFQR 108 (183)
T ss_pred CCCEEEEccHHHH--HHHHH--hhCCEEEEEECCHHHH-------HHHHHcCcccc
Confidence 3579999998642 22222 2478999999999999 99999997653
No 28
>PRK08118 topology modulation protein; Reviewed
Probab=99.57 E-value=1.5e-14 Score=117.90 Aligned_cols=99 Identities=20% Similarity=0.285 Sum_probs=73.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
++|+|+|+|||||||+|+.|+++++++++++|++++..- ....+++....+++..+. .
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~----------------w~~~~~~~~~~~~~~~~~------~ 59 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN----------------WEGVPKEEQITVQNELVK------E 59 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC----------------CcCCCHHHHHHHHHHHhc------C
Confidence 589999999999999999999999999999999876421 123445555555544332 2
Q ss_pred CeEEEeCccC-CHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 144 SGFILDGIPR-TRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 144 ~g~IlDG~Pr-~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
.+||+||.+. +.+ ..+. .+|.+|+|++|.+++ +.|+.+|..
T Consensus 60 ~~wVidG~~~~~~~--~~l~---~~d~vi~Ld~p~~~~-------~~R~~~R~~ 101 (167)
T PRK08118 60 DEWIIDGNYGGTMD--IRLN---AADTIIFLDIPRTIC-------LYRAFKRRV 101 (167)
T ss_pred CCEEEeCCcchHHH--HHHH---hCCEEEEEeCCHHHH-------HHHHHHHHH
Confidence 4799999543 432 2222 489999999999999 888888854
No 29
>PRK03839 putative kinase; Provisional
Probab=99.55 E-value=2.9e-14 Score=116.55 Aligned_cols=102 Identities=15% Similarity=0.189 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
|+|+|+|+|||||||+++.|+++++++|+++++++++.. +++...+ ..+.....+...+.+.. .+
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~-----~~~~~~~--------~~~~~~~~l~~~~~~~~--~~ 65 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG-----IGEEKDD--------EMEIDFDKLAYFIEEEF--KE 65 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC-----CcccCCh--------hhhcCHHHHHHHHHHhc--cC
Confidence 479999999999999999999999999999999987642 1111000 01122333444443321 24
Q ss_pred CeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 144 SGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
.+||+||+... ...++.+|+|+++++++ .+|+.+|..
T Consensus 66 ~~vIidG~~~~---------l~~~~~vi~L~~~~~~~-------~~Rl~~R~~ 102 (180)
T PRK03839 66 KNVVLDGHLSH---------LLPVDYVIVLRAHPKII-------KERLKERGY 102 (180)
T ss_pred CCEEEEecccc---------ccCCCEEEEEECCHHHH-------HHHHHHcCC
Confidence 56999997532 23589999999999999 999988853
No 30
>PRK07261 topology modulation protein; Provisional
Probab=99.42 E-value=6.8e-13 Score=108.48 Aligned_cols=102 Identities=21% Similarity=0.201 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
++|+|+|+|||||||+++.|++.+++++++.|++..... ....+.+.....+...+.+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~----------------~~~~~~~~~~~~~~~~~~~------ 58 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN----------------WQERDDDDMIADISNFLLK------ 58 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc----------------cccCCHHHHHHHHHHHHhC------
Confidence 579999999999999999999999999999987653210 1112333444444544432
Q ss_pred CeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791 144 SGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC 197 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~ 197 (219)
..||+||.+.+..+...++. .|.+|+|++|.+++ +.|+.+|...
T Consensus 59 ~~wIidg~~~~~~~~~~l~~---ad~vI~Ld~p~~~~-------~~R~lkR~~~ 102 (171)
T PRK07261 59 HDWIIDGNYSWCLYEERMQE---ADQIIFLNFSRFNC-------LYRAFKRYLK 102 (171)
T ss_pred CCEEEcCcchhhhHHHHHHH---CCEEEEEcCCHHHH-------HHHHHHHHHH
Confidence 24999999776554555553 69999999999999 8888777543
No 31
>PRK13973 thymidylate kinase; Provisional
Probab=99.42 E-value=7.8e-13 Score=111.57 Aligned_cols=116 Identities=15% Similarity=0.073 Sum_probs=75.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcC--CcccH------------H
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEG--KLVPE------------D 125 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g--~~ip~------------e 125 (219)
++.|+|.|++|||||||++.|++.+ |++++.+.+ +.+++.++.+++.+..+ ..+.. +
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~------p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~ 76 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTRE------PGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDD 76 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEC------CCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999 888886621 22345566666655432 11211 2
Q ss_pred HHHHHHHHHHHhccccCCCeEEEeCcc----------CC--HHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhh
Q 027791 126 VIFALLSKRLEEGYYRGESGFILDGIP----------RT--RIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILN 189 (219)
Q Consensus 126 ~i~~Ll~~~l~~~~~~~~~g~IlDG~P----------r~--~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~ 189 (219)
.+..++.+.+.+ +.-+|.|.|- +. .++...++.. ..||++|+|++|++++ ++
T Consensus 77 ~~~~~i~~~l~~-----g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~-------~~ 144 (213)
T PRK13973 77 HVEEVIRPALAR-----GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVG-------LE 144 (213)
T ss_pred HHHHHHHHHHHC-----CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHH-------HH
Confidence 223333444433 2345556543 32 2344555432 3699999999999999 99
Q ss_pred hhhcCCC
Q 027791 190 EQVDGSL 196 (219)
Q Consensus 190 Rl~~R~~ 196 (219)
|+.+|..
T Consensus 145 Rl~~R~~ 151 (213)
T PRK13973 145 RAAKRRG 151 (213)
T ss_pred HHHhccC
Confidence 9998864
No 32
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.41 E-value=4.6e-13 Score=109.40 Aligned_cols=123 Identities=18% Similarity=0.139 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
|+|.++|.||+||||+|++|+ ++|+.+++..+++.+.-. +...-+ ......+..+-+ .++++... ..
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~-----~~~~de-~r~s~~vD~d~~----~~~le~~~--~~ 67 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGL-----YTEYDE-LRKSVIVDVDKL----RKRLEELL--RE 67 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCC-----eeccCC-ccceEEeeHHHH----HHHHHHHh--cc
Confidence 579999999999999999999 999999999998877532 100000 000111222232 33333211 23
Q ss_pred CeEEEeCccCCHHHHHHHHhhCC-CcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccccchhhhhhhh
Q 027791 144 SGFILDGIPRTRIQAVSLEFCYT-MALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWLCRKFLIKLW 216 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~~~~-pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~ 216 (219)
.+.|+|++-. ++.. +|+||.|.++++++ .+||++|.+++. .-..|..|..+++.+|
T Consensus 68 ~~~Ivd~H~~---------hl~~~~dlVvVLR~~p~~L-------~~RLk~RGy~~e-KI~ENveAEi~~vi~~ 124 (180)
T COG1936 68 GSGIVDSHLS---------HLLPDCDLVVVLRADPEVL-------YERLKGRGYSEE-KILENVEAEILDVILI 124 (180)
T ss_pred CCeEeechhh---------hcCCCCCEEEEEcCCHHHH-------HHHHHHcCCCHH-HHHHHHHHHHHHHHHH
Confidence 5689998832 2333 89999999999999 999999999876 6778999999998876
No 33
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.40 E-value=1.3e-12 Score=105.77 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=76.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCC-CchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~-~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
|+|.+.|+|||||||+++.||++||++|+|.|+++|+-+.. +.++. ++.++-++...++.+ +.++.... ..
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~-ef~~~AE~~p~iD~~-----iD~rq~e~--a~ 72 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLE-EFSRYAEEDPEIDKE-----IDRRQKEL--AK 72 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHH-HHHHHHhcCchhhHH-----HHHHHHHH--HH
Confidence 57899999999999999999999999999999999987653 22222 122222332222222 22222221 12
Q ss_pred CCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 143 ESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 143 ~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+.++|++|. -+.++.. ..+|+-|+|++|.++. .+|+.+|.
T Consensus 73 ~~nvVlegr-----LA~Wi~k-~~adlkI~L~Apl~vR-------a~Ria~RE 112 (179)
T COG1102 73 EGNVVLEGR-----LAGWIVR-EYADLKIWLKAPLEVR-------AERIAKRE 112 (179)
T ss_pred cCCeEEhhh-----hHHHHhc-cccceEEEEeCcHHHH-------HHHHHHhc
Confidence 467899876 1334433 4579999999999999 99999885
No 34
>PRK13949 shikimate kinase; Provisional
Probab=99.40 E-value=3.7e-12 Score=104.04 Aligned_cols=108 Identities=12% Similarity=0.157 Sum_probs=76.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHH-HcCCcccHHHHHHHHHHHHHhccccC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-NEGKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l-~~g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
.+|+|+|+|||||||+++.||+.++++++++|+++.+.... .+.+.+ +.|+....+.-..++.+ +..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~------~~~~~~~~~g~~~fr~~e~~~l~~-l~~----- 69 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK------TVGDIFAERGEAVFRELERNMLHE-VAE----- 69 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc------cHHHHHHHhCHHHHHHHHHHHHHH-HHh-----
Confidence 47999999999999999999999999999999988765432 222222 22333333444444443 322
Q ss_pred CCeEEE-e--CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791 143 ESGFIL-D--GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVD 193 (219)
Q Consensus 143 ~~g~Il-D--G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~ 193 (219)
..++|+ + |+|....+.+.+.. .++||+|++|.+++ .+|+.+
T Consensus 70 ~~~~vis~Ggg~~~~~~~~~~l~~---~~~vi~L~~~~~~~-------~~Ri~~ 113 (169)
T PRK13949 70 FEDVVISTGGGAPCFFDNMELMNA---SGTTVYLKVSPEVL-------FVRLRL 113 (169)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHh---CCeEEEEECCHHHH-------HHHHhc
Confidence 235666 4 46667766777755 47899999999999 999974
No 35
>PRK00625 shikimate kinase; Provisional
Probab=99.36 E-value=6.5e-12 Score=103.22 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-CCcccHHHHHHHHHHHHHhccccC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
|.|+|+|+|||||||+++.||+++|++++++|+++++..... ....+.+.++. |+....+.-..++ +.+. .
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~Ge~~fr~~E~~~l-~~l~-----~ 72 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYGEEGFCREEFLAL-TSLP-----V 72 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHCHHHHHHHHHHHH-HHhc-----c
Confidence 469999999999999999999999999999999998754321 01122332321 2211111111222 1221 1
Q ss_pred CCeEEEeC--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791 143 ESGFILDG--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC 197 (219)
Q Consensus 143 ~~g~IlDG--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~ 197 (219)
+..+|.+| .+...+..+.+. .-..||+|++|.+++ .+|+.+|...
T Consensus 73 ~~~VIs~GGg~~~~~e~~~~l~---~~~~Vv~L~~~~e~l-------~~Rl~~R~~~ 119 (173)
T PRK00625 73 IPSIVALGGGTLMIEPSYAHIR---NRGLLVLLSLPIATI-------YQRLQKRGLP 119 (173)
T ss_pred CCeEEECCCCccCCHHHHHHHh---cCCEEEEEECCHHHH-------HHHHhcCCCC
Confidence 23344444 333333333332 246799999999999 9999998654
No 36
>PRK13974 thymidylate kinase; Provisional
Probab=99.35 E-value=4e-12 Score=107.21 Aligned_cols=127 Identities=19% Similarity=0.174 Sum_probs=80.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeec--cchhHHhhcCCCchhHHHHHHHHHc--CCcccHHHHHHHH--HHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQELSPRSALYKQIANAVNE--GKLVPEDVIFALL--SKRL 135 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is--~~dllr~~~~~~s~lg~~i~~~l~~--g~~ip~e~i~~Ll--~~~l 135 (219)
++..|+|.|++||||||+++.|++.+.-...- ..+.+....+.++++|+.+++++.. |...++.....++ .++.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~ 81 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA 81 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999988422110 0011222234578899999999863 3344444444444 2221
Q ss_pred Hhcc-----ccCCCeEEE-----------eCccCCHHH--HHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791 136 EEGY-----YRGESGFIL-----------DGIPRTRIQ--AVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVD 193 (219)
Q Consensus 136 ~~~~-----~~~~~g~Il-----------DG~Pr~~~q--a~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~ 193 (219)
++.. ......+|| ||+|+...+ ...++.. ..||++|+|++|++++ ++|+.+
T Consensus 82 ~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~-------~~R~~~ 154 (212)
T PRK13974 82 QHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEES-------IRRRKN 154 (212)
T ss_pred HHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHH-------HHHHHh
Confidence 1100 001223666 788876443 4444432 3699999999999999 999988
Q ss_pred CC
Q 027791 194 GS 195 (219)
Q Consensus 194 R~ 195 (219)
|.
T Consensus 155 R~ 156 (212)
T PRK13974 155 RK 156 (212)
T ss_pred cc
Confidence 74
No 37
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.34 E-value=6.2e-12 Score=105.03 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH------cCCccc--------------
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN------EGKLVP-------------- 123 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~------~g~~ip-------------- 123 (219)
++|.|+|++||||||+++.|++.+|+++|+.|++.++.+..+++.++.+.+.+. +|..+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 479999999999999999999999999999999999999888888887776653 231122
Q ss_pred ----HHHHHHHHHHHHHhcc--ccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 124 ----EDVIFALLSKRLEEGY--YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 124 ----~e~i~~Ll~~~l~~~~--~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+++++.++.+.+.+.. .....-+|+| .|.-.+. .+. ..+|.+|++++|+++. ++|+.+|.
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e-~pll~E~--~~~--~~~D~ii~V~a~~e~r-------~~Rl~~R~ 147 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLV-IPLLFEA--KLT--DLCSEIWVVDCSPEQQ-------LQRLIKRD 147 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEE-eHHhcCc--chH--hCCCEEEEEECCHHHH-------HHHHHHcC
Confidence 1233444444443211 1112345555 3322211 111 1479999999999999 99999885
No 38
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.32 E-value=9.8e-12 Score=101.87 Aligned_cols=109 Identities=20% Similarity=0.214 Sum_probs=72.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-CCcccHHHHHHHHHHHHHhcccc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
.+.|+++|+|||||||+++.||+.++++++|+|.++.+... +.|.++++. |+.-..+.-.+++.+-...
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g------~sI~eIF~~~GE~~FR~~E~~vl~~l~~~---- 71 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG------MSIAEIFEEEGEEGFRRLETEVLKELLEE---- 71 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC------cCHHHHHHHHhHHHHHHHHHHHHHHHhhc----
Confidence 46799999999999999999999999999999999988643 344444443 3332222323333322222
Q ss_pred CCCeEEEeC--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhh
Q 027791 142 GESGFILDG--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQV 192 (219)
Q Consensus 142 ~~~g~IlDG--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~ 192 (219)
+..+|-.| ..-+.+....+.. -..||||++|.+++ ++|+.
T Consensus 72 -~~~ViaTGGG~v~~~enr~~l~~---~g~vv~L~~~~e~l-------~~Rl~ 113 (172)
T COG0703 72 -DNAVIATGGGAVLSEENRNLLKK---RGIVVYLDAPFETL-------YERLQ 113 (172)
T ss_pred -CCeEEECCCccccCHHHHHHHHh---CCeEEEEeCCHHHH-------HHHhc
Confidence 22334333 4444444444443 34899999999999 99998
No 39
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.31 E-value=6.9e-12 Score=110.07 Aligned_cols=118 Identities=12% Similarity=0.016 Sum_probs=75.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc-CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l-g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
+..|++.|+|||||||+|+.|++++ +..+++.|++ +..+....+.+.. .+..++...-.+.....+...+.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~-r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~----- 73 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL-RQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK----- 73 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH-HHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHH-----
Confidence 4678899999999999999999999 9999999774 4443221111100 00000000001122233333332
Q ss_pred CCCeEEEeCccCCHHHHHHHHhhC---CC-cEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 142 GESGFILDGIPRTRIQAVSLEFCY---TM-ALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~~---~p-d~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
.+..+|+|+++.+..+.+.+.... .. -.+|+|+++.+++ .+|+.+|.
T Consensus 74 ~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~-------~~R~~~R~ 124 (300)
T PHA02530 74 SGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEEL-------VKRNRKRG 124 (300)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHH-------HHHHHccC
Confidence 246799999999988887765432 22 3479999999999 99999994
No 40
>PRK08233 hypothetical protein; Provisional
Probab=99.31 E-value=1.2e-11 Score=100.27 Aligned_cols=119 Identities=9% Similarity=0.109 Sum_probs=69.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
+++.|.|.|+|||||||+|+.|++.++...+...|..+.... ...+.+....+... +......+.+.+......
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 75 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNC-----PEDICKWIDKGANY-SEWVLTPLIKDIQELIAK 75 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccC-----chhhhhhhhccCCh-hhhhhHHHHHHHHHHHcC
Confidence 357889999999999999999999996433333333332211 12233333444333 223333334444432111
Q ss_pred CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 142 GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
....+|+..+|......+ +.. .+|++|+|++|++++ ++|+.+|..
T Consensus 76 ~~~~~vivd~~~~~~~~~-~~~--~~d~~i~l~~~~~~~-------~~R~~~R~~ 120 (182)
T PRK08233 76 SNVDYIIVDYPFAYLNSE-MRQ--FIDVTIFIDTPLDIA-------MARRILRDF 120 (182)
T ss_pred CCceEEEEeeehhhccHH-HHH--HcCEEEEEcCCHHHH-------HHHHHHHHh
Confidence 223555544565433222 222 378999999999999 999877753
No 41
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.31 E-value=5.2e-12 Score=98.59 Aligned_cols=114 Identities=17% Similarity=0.120 Sum_probs=74.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchh---HHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSAL---YKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~l---g~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
.|++.|+|||||||+++.|++.++..+|+.|++.........+. .....+. -.+.+...+...+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~---- 69 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEER-------AYQILNAAIRKALRN---- 69 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHH-------HHHHHHHHHHHHHHT----
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHH-------HHHHHHHHHHHHHHc----
Confidence 47899999999999999999999999999988666544321110 0001000 012333444444443
Q ss_pred CCCeEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791 142 GESGFILDGIPRTRIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC 197 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~ 197 (219)
+..+|+|+......+.+.+... ..+..+|+|+++++++ .+|+.+|.-.
T Consensus 70 -g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~-------~~R~~~R~~~ 121 (143)
T PF13671_consen 70 -GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETL-------RERLAQRNRE 121 (143)
T ss_dssp -T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHH-------HHHHHTTHCC
T ss_pred -CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHH-------HHHHHhcCCc
Confidence 3568999765555555444332 2356899999999999 9999988644
No 42
>PRK04182 cytidylate kinase; Provisional
Probab=99.30 E-value=8e-12 Score=101.01 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCC-CchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~-~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
|+|+|.|+|||||||+++.|++++|++++++++++++.... +.+. ..+.+ .++..+. +...+...+.... ..
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~-~~~~~---~~~~~~~--~~~~~~~~~~~~~-~~ 73 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSL-EEFNK---YAEEDPE--IDKEIDRRQLEIA-EK 73 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCH-HHHHH---HhhcCch--HHHHHHHHHHHHH-hc
Confidence 57999999999999999999999999999999988875432 1111 11211 1221121 1112222222211 12
Q ss_pred CCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 143 ESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 143 ~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
..++|+||.-.. .+.. ..++++|+|++|.+++ .+|+.+|.
T Consensus 74 ~~~~Vi~g~~~~-----~~~~-~~~~~~V~l~a~~e~~-------~~Rl~~r~ 113 (180)
T PRK04182 74 EDNVVLEGRLAG-----WMAK-DYADLKIWLKAPLEVR-------AERIAERE 113 (180)
T ss_pred CCCEEEEEeecc-----eEec-CCCCEEEEEECCHHHH-------HHHHHhcc
Confidence 457899984211 1111 1278999999999999 99998875
No 43
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.30 E-value=1.8e-11 Score=98.31 Aligned_cols=112 Identities=18% Similarity=0.147 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCC-chhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR-SALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~-s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
+.|+|.|++||||||+++.|++++|+++++.+++++...... .+. ..+........ .+...+...+.+.. ..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~-----~~~~~~~~~i~~~~-~~ 73 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDL-IEFLNYAEENP-----EIDKKIDRRIHEIA-LK 73 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCH-HHHHHHHhcCc-----HHHHHHHHHHHHHH-hc
Confidence 478999999999999999999999999999999887754321 111 11111211111 12223333333221 12
Q ss_pred CCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 143 ESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 143 ~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
..++|+||.-.... + ...+|++|++++|++++ .+|+.+|.
T Consensus 74 ~~~~Vi~g~~~~~~----~--~~~~d~~v~v~a~~~~r-------~~R~~~R~ 113 (171)
T TIGR02173 74 EKNVVLESRLAGWI----V--REYADVKIWLKAPLEVR-------ARRIAKRE 113 (171)
T ss_pred CCCEEEEeccccee----e--cCCcCEEEEEECCHHHH-------HHHHHHcc
Confidence 45789999632211 1 12478999999999999 99998885
No 44
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.29 E-value=1.1e-11 Score=103.16 Aligned_cols=120 Identities=17% Similarity=0.167 Sum_probs=80.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcC-----Cccc--------------
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVP-------------- 123 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g-----~~ip-------------- 123 (219)
+..|.|+|++||||||+++.|++ +|+++|+.|++.++.+.++++..+.+.+.+..+ ..++
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 35799999999999999999998 999999999999999887777777776654221 1122
Q ss_pred ----HHHHHHHHHHHHHhccc--cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 124 ----EDVIFALLSKRLEEGYY--RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 124 ----~e~i~~Ll~~~l~~~~~--~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+++++..+.+++.+... ....-+|+|. |.-.+ . .+. ..+|.||++++|+++. .+|+.+|+
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e-~-~~~--~~~D~vi~V~a~~e~~-------~~Rl~~R~ 146 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQLQEAESSPYVVLDI-PLLFE-N-GLE--KLVDRVLVVDAPPETQ-------LERLMARD 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe-hHhhc-C-Cch--hhCCeEEEEECCHHHH-------HHHHHHcC
Confidence 12344444444432211 1123455653 32221 1 011 1379999999999999 99999884
No 45
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.29 E-value=1.1e-11 Score=101.72 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=80.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCC-----ccc----------------
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVP---------------- 123 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~-----~ip---------------- 123 (219)
.|.|+|+|||||||+++.|++ +|+++|++|++.++.+..+.+.++.+.+.+...- .+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 378999999999999999998 9999999999999998877777777766543211 111
Q ss_pred --HHHHHHHHHHHHHhcccc-CC-CeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 124 --EDVIFALLSKRLEEGYYR-GE-SGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 124 --~e~i~~Ll~~~l~~~~~~-~~-~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+++++.++..++.+.... .. .-+|+| .|.-.+.. +. ..+|.+|++++|+++. ++|+.+|.
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive-~plL~e~~--~~--~~~D~vv~V~a~~~~r-------i~Rl~~Rd 143 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLD-IPLLFETG--LE--KLVDRVIVVDAPPEIQ-------IERLMKRD 143 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEE-ehHhhcCC--cH--HhCCeEEEEECCHHHH-------HHHHHHcC
Confidence 234455554444332111 12 234555 44322211 11 1469999999999999 99999885
No 46
>PRK13947 shikimate kinase; Provisional
Probab=99.26 E-value=5e-11 Score=96.17 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=70.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhccccC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
..|+|+|+|||||||+++.||+++|+++++.|+++++.. +.+. .++++ .|+....+....+++ .+..
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~--g~~~----~~~~~~~ge~~~~~~e~~~~~-~l~~----- 69 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT--GMTV----AEIFEKDGEVRFRSEEKLLVK-KLAR----- 69 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc--CCcH----HHHHHHhChHHHHHHHHHHHH-HHhh-----
Confidence 369999999999999999999999999999998876652 2222 22222 122111222222222 2322
Q ss_pred CCeEEEe-C--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791 143 ESGFILD-G--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC 197 (219)
Q Consensus 143 ~~g~IlD-G--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~ 197 (219)
..+.|+. | ++......+.+.+ .+.+|+|+++++++ .+|+..|...
T Consensus 70 ~~~~vi~~g~g~vl~~~~~~~l~~---~~~vv~L~~~~~~l-------~~Rl~~r~~r 117 (171)
T PRK13947 70 LKNLVIATGGGVVLNPENVVQLRK---NGVVICLKARPEVI-------LRRVGKKKSR 117 (171)
T ss_pred cCCeEEECCCCCcCCHHHHHHHHh---CCEEEEEECCHHHH-------HHHhcCCCCC
Confidence 1233332 2 3444444444443 36799999999999 9999877543
No 47
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.25 E-value=7.1e-11 Score=99.34 Aligned_cols=118 Identities=18% Similarity=0.179 Sum_probs=78.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCc-----cc--------------
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VP-------------- 123 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~-----ip-------------- 123 (219)
++.|.|+|.|||||||+++.+++ +|+++|++|+++|+.+.++++..+.+.+.....-. +.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 57899999999999999999988 99999999999999988877766665554321110 00
Q ss_pred ----HHHHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhh-C--CCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 124 ----EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFC-Y--TMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 124 ----~e~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~-~--~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
++++..++...+.........++++--.| .|.+. . .+|.||.+++|+++. ++|+.+|.
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~eip-------lL~e~~~~~~~d~Vi~V~a~~e~r-------~eRl~~R~ 145 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEIP-------LLFEAGGEKYFDKVIVVYAPPEIR-------LERLMKRD 145 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEch-------HHHhccccccCCEEEEEECCHHHH-------HHHHHhcC
Confidence 12344444444321000111223332233 22221 1 278999999999999 99999997
No 48
>PRK04040 adenylate kinase; Provisional
Probab=99.24 E-value=2.9e-11 Score=100.53 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=74.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc--CCCeeccchhHHhhcCCCc--hhHHHHHHHHHcCCcccHHHHHHHHHHHHHhc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRS--ALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l--g~~~Is~~dllr~~~~~~s--~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~ 138 (219)
++.|+|+|+|||||||+++.|++++ ++.+++.++++++.+.... .....+++ -.....+-+..+..+.+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~----l~~~~~~~~~~~a~~~i~~~ 77 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRK----LPPEEQKELQREAAERIAEM 77 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhh----CChhhhHHHHHHHHHHHHHh
Confidence 5789999999999999999999999 8999999999877654211 00111111 11111112222333444432
Q ss_pred cccCCCeEEEeCccCCH--H------HHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791 139 YYRGESGFILDGIPRTR--I------QAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVD 193 (219)
Q Consensus 139 ~~~~~~g~IlDG~Pr~~--~------qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~ 193 (219)
..+..+|+||+.... . ....+. ...||.+|+|.++++++ ++|..+
T Consensus 78 --~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~-~l~pd~ii~l~a~p~~i-------~~Rrl~ 130 (188)
T PRK04040 78 --AGEGPVIVDTHATIKTPAGYLPGLPEWVLE-ELNPDVIVLIEADPDEI-------LMRRLR 130 (188)
T ss_pred --hcCCCEEEeeeeeeccCCCCcCCCCHHHHh-hcCCCEEEEEeCCHHHH-------HHHHhc
Confidence 234458999965211 1 122233 34799999999999999 887764
No 49
>PRK13975 thymidylate kinase; Provisional
Probab=99.23 E-value=2.1e-10 Score=94.56 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=73.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHH-HHH------H
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL-SKR------L 135 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll-~~~------l 135 (219)
++.|+|.|++||||||+++.|+++++..+.. .+.++.+++.+++++..+. .++..+..+. .++ +
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~--------~~~~~~~g~~ir~~~~~~~-~~~~~~~~~f~~~r~~~~~~i 72 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTC--------EPTDGKIGKLIREILSGSK-CDKETLALLFAADRVEHVKEI 72 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeE--------CCCCChHHHHHHHHHccCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999863321 1223556777888776542 3332222111 122 2
Q ss_pred HhccccCCCeEEEeCccCCH-----------HHHHHHHh-hCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 136 EEGYYRGESGFILDGIPRTR-----------IQAVSLEF-CYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 136 ~~~~~~~~~g~IlDG~Pr~~-----------~qa~~l~~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+... ....+|.|.|+.+. .....+.. ...||++|+|+++++++ ++|+.+|.
T Consensus 73 ~~~~--~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~-------~~Rl~~r~ 135 (196)
T PRK13975 73 EEDL--KKRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEA-------LKRMETRD 135 (196)
T ss_pred HHHH--cCCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHH-------HHHHhccC
Confidence 2111 13568999876431 11111221 24699999999999999 99999886
No 50
>PRK06762 hypothetical protein; Provisional
Probab=99.22 E-value=6.4e-11 Score=95.36 Aligned_cols=111 Identities=20% Similarity=0.191 Sum_probs=70.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc--CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l--g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~ 140 (219)
+..|+|.|+|||||||+|+.|++++ ++.+++.|+ ++..+..... ..+ ....+.+..++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~-~r~~l~~~~~---------~~~-~~~~~~~~~~~~~~~~---- 66 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDV-VRRDMLRVKD---------GPG-NLSIDLIEQLVRYGLG---- 66 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHH-HHHHhccccC---------CCC-CcCHHHHHHHHHHHHh----
Confidence 5788999999999999999999998 566777654 4443321100 000 1122333333332222
Q ss_pred cCCCeEEEeCccCCHHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 141 RGESGFILDGIPRTRIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 141 ~~~~g~IlDG~Pr~~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
.+..+|+|+......+.+.+.. ...+..+|+|++|.+++ ++|..+|..
T Consensus 67 -~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~-------~~R~~~R~~ 118 (166)
T PRK06762 67 -HCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEET-------LRRHSTRPK 118 (166)
T ss_pred -CCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHH-------HHHHhcccc
Confidence 2456899987544333333332 23467899999999999 999999964
No 51
>PLN02924 thymidylate kinase
Probab=99.22 E-value=2.1e-10 Score=97.70 Aligned_cols=127 Identities=15% Similarity=0.099 Sum_probs=81.7
Q ss_pred CCCCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHH-HHHHH
Q 027791 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL-LSKRL 135 (219)
Q Consensus 57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~L-l~~~l 135 (219)
...+.+++.|+|.|++|||||||++.|++.+....+++ ..+++. ..+++.|+.+++++..+..+++....-+ ..++.
T Consensus 10 ~~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~ep-~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~ 87 (220)
T PLN02924 10 SSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRFP-DRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRW 87 (220)
T ss_pred CCcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeCC-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 33446789999999999999999999999996555443 233332 2357889999998887655544322111 11222
Q ss_pred Hhcc-----ccCCCeEEEeCccCCH--HHH------HHHHh----hCCCcEEEEEEeChhhhcccccchhhhhh
Q 027791 136 EEGY-----YRGESGFILDGIPRTR--IQA------VSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQV 192 (219)
Q Consensus 136 ~~~~-----~~~~~g~IlDG~Pr~~--~qa------~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~ 192 (219)
++.. ...+..+|.|-|..+. .|. +++.. ...||++|+|++|++++ ++|..
T Consensus 88 ~~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a-------~~R~~ 154 (220)
T PLN02924 88 EKRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEA-------AERGG 154 (220)
T ss_pred HHHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHH-------HHHhc
Confidence 1110 1234568999886532 111 12221 23699999999999999 88864
No 52
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.22 E-value=1.3e-10 Score=91.85 Aligned_cols=113 Identities=15% Similarity=0.019 Sum_probs=71.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCccc----HHHHHHHHHHHHHhccc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP----EDVIFALLSKRLEEGYY 140 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip----~e~i~~Ll~~~l~~~~~ 140 (219)
.|+|.|+|||||||+++.|++.++.++++.|++..... ...+..|...+ ++....+.....+.. .
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 69 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPAN----------IAKMAAGIPLNDEDRWPWLQALTDALLAKL-A 69 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHH----------HHHHHcCCCCCccchhhHHHHHHHHHHHHH-H
Confidence 37899999999999999999999999999877654311 00011121111 122222211111111 0
Q ss_pred cCCCeEEEeCccCCHHHHHHHHhh--CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 141 RGESGFILDGIPRTRIQAVSLEFC--YTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 141 ~~~~g~IlDG~Pr~~~qa~~l~~~--~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
..+.++|+|.......+.+.+... ..+..+|++++|.+++ .+|+.+|.
T Consensus 70 ~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~-------~~R~~~R~ 119 (150)
T cd02021 70 SAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVL-------AERLAARK 119 (150)
T ss_pred hCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHH-------HHHHHhcc
Confidence 134568888644445555556554 2455799999999999 99999995
No 53
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.22 E-value=1.1e-11 Score=94.37 Aligned_cols=102 Identities=22% Similarity=0.205 Sum_probs=57.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc-ccCC
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY-YRGE 143 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~-~~~~ 143 (219)
+|+|.|+|||||||+|+.|++++|++|+++|++++..... +. ..+..-......+.+...++... ....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 70 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWI--ER--------DDDEREYIDADIDLLDDILEQLQNKPDN 70 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHC--HG--------CTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEecccc--cc--------CcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence 5889999999999999999999999999999954322111 00 00110001112222222232210 0245
Q ss_pred CeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhh
Q 027791 144 SGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCC 180 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l 180 (219)
..||+||.-. .. .+ + .....+.+|+++++.+.+
T Consensus 71 ~~~ii~g~~~-~~-~~-~-~~~~~~~~i~l~~~~~~~ 103 (121)
T PF13207_consen 71 DNWIIDGSYE-SE-ME-I-RLPEFDHVIYLDAPDEEC 103 (121)
T ss_dssp -EEEEECCSC-HC-CH-S-CCHHGGCEEEEEEEEHHH
T ss_pred CeEEEeCCCc-cc-hh-h-hhhcCCEEEEEECCCHHH
Confidence 6899999311 11 11 1 111246899999999855
No 54
>PRK13946 shikimate kinase; Provisional
Probab=99.21 E-value=1.5e-10 Score=95.34 Aligned_cols=115 Identities=13% Similarity=0.132 Sum_probs=73.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~ 140 (219)
..+..|+|+|+|||||||+++.||+++|+++++.|.++.... +.+..+.+.. .|.....+.-..++.+.+.
T Consensus 8 ~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~---- 78 (184)
T PRK13946 8 LGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLK---- 78 (184)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHh----
Confidence 456789999999999999999999999999999988766553 2233222211 1221112222333332221
Q ss_pred cCCCeEEEeC--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 141 RGESGFILDG--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 141 ~~~~g~IlDG--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
....+|..| .+......+.+.. -.++|+|++|++++ ++|+.+|.
T Consensus 79 -~~~~Vi~~ggg~~~~~~~r~~l~~---~~~~v~L~a~~e~~-------~~Rl~~r~ 124 (184)
T PRK13946 79 -GGPLVLATGGGAFMNEETRAAIAE---KGISVWLKADLDVL-------WERVSRRD 124 (184)
T ss_pred -cCCeEEECCCCCcCCHHHHHHHHc---CCEEEEEECCHHHH-------HHHhcCCC
Confidence 123455554 2344444444433 35789999999999 99998774
No 55
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.20 E-value=3.9e-10 Score=95.36 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=81.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcC-CcccHHHHHHHH-HHH--
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEG-KLVPEDVIFALL-SKR-- 134 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g-~~ip~e~i~~Ll-~~~-- 134 (219)
+++.|+|.|+.||||||+++.|++.+ |+.++- .|+ +.++++++.+++.+.++ ..+++....-+. .++
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~----trE--P~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~ 75 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVL----TRE--PGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQ 75 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE----EeC--CCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999988 444442 233 56699999999998876 344443222111 112
Q ss_pred -----HHhccccCCCeEEEeCccCCH--HH----------HHHHHhh-C---CCcEEEEEEeChhhhcccccchhhhhhc
Q 027791 135 -----LEEGYYRGESGFILDGIPRTR--IQ----------AVSLEFC-Y---TMALAFLFLFLYGCCVIIGSVILNEQVD 193 (219)
Q Consensus 135 -----l~~~~~~~~~g~IlDG~Pr~~--~q----------a~~l~~~-~---~pd~VI~L~~~~e~l~~~~~~~~~Rl~~ 193 (219)
+... ...+.-+|.|-|-.+. .| ...+++. . .||++++|++|+++. ++|+.+
T Consensus 76 h~~~~i~pa-l~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~a-------l~R~~~ 147 (208)
T COG0125 76 HLEEVIKPA-LKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVA-------LERIRK 147 (208)
T ss_pred HHHHHHHHh-hcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHH-------HHHHHh
Confidence 1111 1234568889775432 12 1222222 2 699999999999999 999999
Q ss_pred CCCC
Q 027791 194 GSLC 197 (219)
Q Consensus 194 R~~~ 197 (219)
|...
T Consensus 148 r~~~ 151 (208)
T COG0125 148 RGEL 151 (208)
T ss_pred cCCc
Confidence 8654
No 56
>PRK13948 shikimate kinase; Provisional
Probab=99.20 E-value=1.7e-10 Score=95.54 Aligned_cols=111 Identities=13% Similarity=0.010 Sum_probs=73.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhcc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGY 139 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~~ 139 (219)
.++..|+|+|.|||||||+++.||+++|.++|++|.++++... ..+.+++. .|+....+....++..-+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g------~si~~if~~~Ge~~fR~~E~~~l~~l~~--- 78 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG------KSIPEIFRHLGEAYFRRCEAEVVRRLTR--- 78 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh------CCHHHHHHHhCHHHHHHHHHHHHHHHHh---
Confidence 4667899999999999999999999999999999988876532 23333332 2333233333333333221
Q ss_pred ccCCCeEEEe---CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791 140 YRGESGFILD---GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVD 193 (219)
Q Consensus 140 ~~~~~g~IlD---G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~ 193 (219)
..+.||. |.+...+..+.+.+ -..+|+|+++++++ .+|+.+
T Consensus 79 ---~~~~VIa~GgG~v~~~~n~~~l~~---~g~vV~L~~~~e~l-------~~Rl~~ 122 (182)
T PRK13948 79 ---LDYAVISLGGGTFMHEENRRKLLS---RGPVVVLWASPETI-------YERTRP 122 (182)
T ss_pred ---cCCeEEECCCcEEcCHHHHHHHHc---CCeEEEEECCHHHH-------HHHhcC
Confidence 1234444 45555554444543 35799999999999 999953
No 57
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.20 E-value=2.4e-10 Score=90.20 Aligned_cols=109 Identities=18% Similarity=0.129 Sum_probs=66.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCCe
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESG 145 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~g 145 (219)
|+|+|+|||||||+++.|++.+|+++++.+++++..... +..+.... .| .+.....-.+.+... ....+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~---~~----~~~~~~~e~~~~~~~--~~~~~ 70 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAE---EG----EEGFRELEREVLLLL--LTKEN 70 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHH---HC----HHHHHHHHHHHHHHH--hccCC
Confidence 789999999999999999999999999999988766532 22221111 11 122222111111111 11234
Q ss_pred EEEeC---ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 146 FILDG---IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 146 ~IlDG---~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+|+++ +.......+.+ .....+|+|++|++++ .+|+.+|.
T Consensus 71 ~vi~~g~~~i~~~~~~~~~---~~~~~~i~l~~~~e~~-------~~R~~~r~ 113 (154)
T cd00464 71 AVIATGGGAVLREENRRLL---LENGIVVWLDASPEEL-------LERLARDK 113 (154)
T ss_pred cEEECCCCccCcHHHHHHH---HcCCeEEEEeCCHHHH-------HHHhccCC
Confidence 55552 22222222222 2356899999999999 99998875
No 58
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.19 E-value=2.2e-10 Score=94.72 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=73.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCC---CeeccchhHHhhcCCCchhHHHHHHHHHc-CCcccHHH-HHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV---PHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDV-IFALLSKRLE 136 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~---~~Is~~dllr~~~~~~s~lg~~i~~~l~~-g~~ip~e~-i~~Ll~~~l~ 136 (219)
+++.|+|.|++||||||+++.|++.++. .++.. + + +.+++.++.+++.+.. ........ ..-.+..+..
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~----~-~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 75 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT----R-E-PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ 75 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe----e-C-CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999999998732 22211 1 1 2245677888887763 22222211 1111112211
Q ss_pred hcc------ccCCCeEEEeCccCCH------------HHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 137 EGY------YRGESGFILDGIPRTR------------IQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 137 ~~~------~~~~~g~IlDG~Pr~~------------~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
... ...+..+|+|-++.+. +....+... ..||++|+|++|++++ ++|+.+|
T Consensus 76 ~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~-------~~Rl~~R 148 (205)
T PRK00698 76 HLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVG-------LARIRAR 148 (205)
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHH-------HHHHHhc
Confidence 110 0234578999655432 112222221 4699999999999999 9999999
Q ss_pred C
Q 027791 195 S 195 (219)
Q Consensus 195 ~ 195 (219)
.
T Consensus 149 ~ 149 (205)
T PRK00698 149 G 149 (205)
T ss_pred C
Confidence 6
No 59
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.19 E-value=8.2e-11 Score=97.05 Aligned_cols=119 Identities=15% Similarity=0.230 Sum_probs=77.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH------cCCccc---------------
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN------EGKLVP--------------- 123 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~------~g~~ip--------------- 123 (219)
+|+|+|.+||||||+++.|++..|+++|+.|++.++.+..+.+..+.+.+.+. +|. +.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~-idr~~L~~~vf~~~~~~ 79 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGE-LDRKALGERVFNDPEEL 79 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCC-CCHHHHHHHHhCCHHHH
Confidence 47899999999999999999988899999999999999887766666554332 222 11
Q ss_pred ---HHHHHHHHHHHHHhcc--ccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 124 ---EDVIFALLSKRLEEGY--YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 124 ---~e~i~~Ll~~~l~~~~--~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
++++..++.+.+.+.. ......+|+-+.|.-.+. .+.. ..|.+|+++++++++ .+|+.+|.
T Consensus 80 ~~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~--~~~~--~~D~vv~V~~~~~~~-------~~Rl~~R~ 145 (188)
T TIGR00152 80 KWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFEN--KLRS--LCDRVIVVDVSPQLQ-------LERLMQRD 145 (188)
T ss_pred HHHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhC--CcHH--hCCEEEEEECCHHHH-------HHHHHHcC
Confidence 1222222222222111 011112444445443221 1111 368999999999999 99999986
No 60
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.17 E-value=1.8e-10 Score=94.82 Aligned_cols=120 Identities=15% Similarity=0.076 Sum_probs=71.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCC---CeeccchhHHhhcCCCchhHHHHHHHHHcCC--cccHHHHH--------H
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEV---PHISMGSLVRQELSPRSALYKQIANAVNEGK--LVPEDVIF--------A 129 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~---~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~--~ip~e~i~--------~ 129 (219)
++.|+|.|+|||||||+++.|++.++. .++-. ..+.+++.++.+++.+..+. ...+.... .
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~ 76 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT------REPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE 76 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 688999999999999999999999844 33211 11234677777877754332 22221111 1
Q ss_pred HHHHHHHhccccCCCeEEEeCcc----------CCHH--HHHHHH-hhC--CCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 130 LLSKRLEEGYYRGESGFILDGIP----------RTRI--QAVSLE-FCY--TMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 130 Ll~~~l~~~~~~~~~g~IlDG~P----------r~~~--qa~~l~-~~~--~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
.+...+.... ..+.-+|+|.+. +... ....+. ... .||++|+|+++++++ ++|+.+|
T Consensus 77 ~~~~~i~~~l-~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~-------~~R~~~r 148 (195)
T TIGR00041 77 HLEDKIKPAL-AEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVA-------LERLRKR 148 (195)
T ss_pred HHHHHHHHHH-hCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHH-------HHHHHhc
Confidence 1112222111 123457788543 2211 112222 122 399999999999999 9999888
Q ss_pred CC
Q 027791 195 SL 196 (219)
Q Consensus 195 ~~ 196 (219)
..
T Consensus 149 ~~ 150 (195)
T TIGR00041 149 GE 150 (195)
T ss_pred CC
Confidence 54
No 61
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.17 E-value=4.8e-10 Score=90.65 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhccccC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
..|+|+|+|||||||+++.||+++|+++++.|.++..... ... .++++ .|...-.+...+++ +.+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g--~~~----~~~~~~~g~~~~~~~e~~~~-~~~~------ 69 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN--MTV----AEIVEREGWAGFRARESAAL-EAVT------ 69 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC--CCH----HHHHHHHCHHHHHHHHHHHH-HHhc------
Confidence 4588999999999999999999999999999888766432 222 22221 12111111122222 1221
Q ss_pred CCeEEEe-C--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 143 ESGFILD-G--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 143 ~~g~IlD-G--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
....|+. | ++......+.+.. .+.+|+|++|++++ .+|+.+|.
T Consensus 70 ~~~~vi~~ggg~vl~~~~~~~l~~---~~~~v~l~~~~~~~-------~~Rl~~r~ 115 (171)
T PRK03731 70 APSTVIATGGGIILTEENRHFMRN---NGIVIYLCAPVSVL-------ANRLEANP 115 (171)
T ss_pred CCCeEEECCCCccCCHHHHHHHHh---CCEEEEEECCHHHH-------HHHHcccc
Confidence 1234443 3 4444444455543 56899999999999 99998764
No 62
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.16 E-value=2.6e-10 Score=91.42 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=69.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
.++.|+|+|+|||||||+++.|++++|+++++.+++++..... ++...+.+ .|.....+....++.+....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~--~~~~~~~~---~g~~~~~~~~~~~~~~l~~~---- 73 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGK--SIPEIFEE---EGEAAFRELEEEVLAELLAR---- 73 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--CHHHHHHH---HCHHHHHHHHHHHHHHHHhc----
Confidence 5678999999999999999999999999999999887765322 22221111 12211112222332222221
Q ss_pred CCCeEEEeC--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 142 GESGFILDG--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 142 ~~~g~IlDG--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
...+|..| +.......+.+. ....+|+|++|.+++ .+|+.+|.
T Consensus 74 -~~~vi~~g~~~~~~~~~r~~l~---~~~~~v~l~~~~~~~-------~~R~~~~~ 118 (175)
T PRK00131 74 -HNLVISTGGGAVLREENRALLR---ERGTVVYLDASFEEL-------LRRLRRDR 118 (175)
T ss_pred -CCCEEEeCCCEeecHHHHHHHH---hCCEEEEEECCHHHH-------HHHhcCCC
Confidence 22344444 222222233332 245899999999999 99998764
No 63
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.15 E-value=6.7e-11 Score=99.15 Aligned_cols=121 Identities=12% Similarity=0.075 Sum_probs=74.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhH-HHHHHHHHcCCcccH----HH----------
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALY-KQIANAVNEGKLVPE----DV---------- 126 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg-~~i~~~l~~g~~ip~----e~---------- 126 (219)
.++.|++.|+|||||||+|+.|++++|+.++..+|++|+.+....+.+ .......+.|+.+++ .+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999876432221 111111111222221 11
Q ss_pred ----HHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEe-ChhhhcccccchhhhhhcCCC
Q 027791 127 ----IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLF-LYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 127 ----i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~-~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
+..++...+. .+..+|+||......+.+.... . -..++++.+ +++.. .+|+..|..
T Consensus 82 v~~~L~~va~~~l~-----~G~sVIvEgv~l~p~~~~~~~~-~-~v~~i~l~v~d~e~l-------r~Rl~~R~~ 142 (197)
T PRK12339 82 IMPGINRVIRRALL-----NGEDLVIESLYFHPPMIDENRT-N-NIRAFYLYIRDAELH-------RSRLADRIN 142 (197)
T ss_pred HHHHHHHHHHHHHH-----cCCCEEEEecCcCHHHHHHHHh-c-CeEEEEEEeCCHHHH-------HHHHHHHhh
Confidence 1122222222 3457999997666555432221 1 235677776 46666 788888863
No 64
>PLN02422 dephospho-CoA kinase
Probab=99.14 E-value=3e-10 Score=97.50 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=79.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH------cCCccc---------------
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN------EGKLVP--------------- 123 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~------~g~~ip--------------- 123 (219)
.|.|+|.+||||||+++.|+ ++|+++|++|++.++.+.++++..+.+.+.+. +|. +.
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~-idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGE-VDREKLGQIVFSDPSKR 80 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCc-CCHHHHHHHHhCCHHHH
Confidence 68999999999999999998 68999999999999999887776666655441 222 22
Q ss_pred ---HHHHHHHHHHHHHhc----cccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 124 ---EDVIFALLSKRLEEG----YYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 124 ---~e~i~~Ll~~~l~~~----~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+++++..+.+.+... ......-+|+| .|.-.+ .. +. ...|.||++++|+++. ++|+.+|+
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ipLL~E-~~-~~--~~~D~vI~V~a~~e~r-------i~RL~~R~ 147 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IPLLFE-TK-MD--KWTKPVVVVWVDPETQ-------LERLMARD 147 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-ehhhhh-cc-hh--hhCCEEEEEECCHHHH-------HHHHHHcC
Confidence 134444444433211 00122345555 343222 11 11 1479999999999999 99999995
No 65
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.13 E-value=3.9e-10 Score=94.56 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCccc-----H--------------
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP-----E-------------- 124 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip-----~-------------- 124 (219)
..|.|+|.+||||||+++.|++ +|+++|+.|++.++.+.++++..+++.+.+..+-..+ .
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 4689999999999999999987 8999999999999998888877777776654332211 1
Q ss_pred ----HHHHHHHHHHHHh----ccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 125 ----DVIFALLSKRLEE----GYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 125 ----e~i~~Ll~~~l~~----~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
++++..+...+.+ ....+..-+++| .|.-.+.. + ...+|.+|++++|+++. ++|+.+|+
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e-~plL~e~g--~--~~~~D~vi~V~a~~e~r-------i~Rl~~R~ 147 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYD-MPLLVEKG--L--DRKMDLVVVVDVDVEER-------VRRLVEKR 147 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEE-eeceeEcC--c--cccCCeEEEEECCHHHH-------HHHHHHcC
Confidence 1222333222221 100111234443 33211100 0 01479999999999999 99998884
No 66
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.12 E-value=1.3e-09 Score=88.96 Aligned_cols=119 Identities=10% Similarity=0.009 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCC--cccHHHHH--------HH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGK--LVPEDVIF--------AL 130 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~--~ip~e~i~--------~L 130 (219)
+.|+|.|++||||||+++.|++.+ |..++.... +..++.++.+++++..+. ........ ..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999998 666654432 223445677777766432 11111110 11
Q ss_pred HHHHHHhccccCCCeEEEeCccCCH------------HHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 131 LSKRLEEGYYRGESGFILDGIPRTR------------IQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDG~Pr~~------------~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
+...+... ...+..+|+|-++.+. .....+.. ...||.+|+|+++++++ ++|+.+|
T Consensus 75 ~~~~~~~~-~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~-------~~R~~~R 146 (200)
T cd01672 75 VEEVIKPA-LARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVG-------LARIEAR 146 (200)
T ss_pred HHHHHHHH-HhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHH-------HHHHHhc
Confidence 11112111 1235678889665321 12222221 23689999999999999 9999998
Q ss_pred CC
Q 027791 195 SL 196 (219)
Q Consensus 195 ~~ 196 (219)
..
T Consensus 147 ~~ 148 (200)
T cd01672 147 GR 148 (200)
T ss_pred CC
Confidence 64
No 67
>PRK06547 hypothetical protein; Provisional
Probab=99.11 E-value=2e-10 Score=94.25 Aligned_cols=126 Identities=12% Similarity=0.062 Sum_probs=73.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHH-HHcCCcccHHHHHHHHHHHHHhc
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANA-VNEGKLVPEDVIFALLSKRLEEG 138 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~-l~~g~~ip~e~i~~Ll~~~l~~~ 138 (219)
+.+++.|.|.|++||||||+++.|++.++++++++|++....-. .....+.+.+. +..|+...-. .+.........
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~--yd~~~~~~~~~ 88 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWR--WDWANNRPGDW 88 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceec--CCCCCCCCCCc
Confidence 35778999999999999999999999999999999987754211 01111222222 2223211000 00000000000
Q ss_pred -cccCCCeEEEeCccCC-HHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 139 -YYRGESGFILDGIPRT-RIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 139 -~~~~~~g~IlDG~Pr~-~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
....+..+|++|.... ....+.+++ ....+.|++++|.++. .+|+.+|..
T Consensus 89 ~~l~~~~vVIvEG~~al~~~~r~~~d~-~g~v~~I~ld~~~~vr-------~~R~~~Rd~ 140 (172)
T PRK06547 89 VSVEPGRRLIIEGVGSLTAANVALASL-LGEVLTVWLDGPEALR-------KERALARDP 140 (172)
T ss_pred EEeCCCCeEEEEehhhccHHHHHHhcc-CCCEEEEEEECCHHHH-------HHHHHhcCc
Confidence 0112356889986222 222222222 1223899999999999 999999963
No 68
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.10 E-value=8.7e-10 Score=88.46 Aligned_cols=111 Identities=15% Similarity=0.027 Sum_probs=63.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCccc----HHHHHHHHHHHHHhcccc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP----EDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip----~e~i~~Ll~~~l~~~~~~ 141 (219)
|+++|+|||||||+++.|++.++.++++.|++...... +. ...+...+ .++...+. +.+......
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 69 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANI---------EK-MSAGIPLNDDDRWPWLQNLN-DASTAAAAK 69 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHH---------HH-HHcCCCCChhhHHHHHHHHH-HHHHHHHhc
Confidence 57899999999999999999999999999886422100 00 00011111 11222211 111111111
Q ss_pred CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 142 GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+...+|..++. .....+.+........+|+|++|++++ .+|+..|.
T Consensus 70 ~~~~Vi~~t~~-~~~~r~~~~~~~~~~~~i~l~~~~e~~-------~~R~~~R~ 115 (163)
T TIGR01313 70 NKVGIITCSAL-KRHYRDILREAEPNLHFIYLSGDKDVI-------LERMKARK 115 (163)
T ss_pred CCCEEEEeccc-HHHHHHHHHhcCCCEEEEEEeCCHHHH-------HHHHHhcc
Confidence 22334444554 333344444333334579999999999 99999885
No 69
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.10 E-value=1.3e-10 Score=90.78 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=63.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCC
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~ 144 (219)
.|+|.|+|||||||+|+.|++++|+++++.+.+-.++. ........ ....+...+.+.+.+. ....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~------~~~~~~~~------~~~~i~~~l~~~~~~~--~~~~ 66 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV------GKLASEVA------AIPEVRKALDERQREL--AKKP 66 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH------HHHHHHhc------ccHhHHHHHHHHHHHH--hhCC
Confidence 37899999999999999999999999999984322211 11111100 0011122222222221 1234
Q ss_pred eEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 145 GFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 145 g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
.||+||...... + ....+++|+|++|+++. ++|+.+|
T Consensus 67 ~~Vidg~~~~~~----~--~~~~~~~i~l~~~~~~r-------~~R~~~r 103 (147)
T cd02020 67 GIVLEGRDIGTV----V--FPDADLKIFLTASPEVR-------AKRRAKQ 103 (147)
T ss_pred CEEEEeeeeeeE----E--cCCCCEEEEEECCHHHH-------HHHHHHH
Confidence 699999742111 1 12368999999999999 8998874
No 70
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.09 E-value=2.7e-10 Score=94.23 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-----CCccc---------------
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-----GKLVP--------------- 123 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-----g~~ip--------------- 123 (219)
|.|.|+|..||||||+++.|++ +|+++|++|++.++.+.++.+..+.+.+.+.. ...+.
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5789999999999999999987 99999999999999998888877777665431 11122
Q ss_pred ---HHHHHHHHHHHHHhcc--ccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 124 ---EDVIFALLSKRLEEGY--YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 124 ---~e~i~~Ll~~~l~~~~--~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+++++.++.+.+.+.. .....-+|+| .|.-.+. .+. ..+|.||++.+|+++. ++|+.+|+
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e-~pLL~E~--~~~--~~~D~vi~V~a~~e~r-------i~Rl~~R~ 144 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVE-IPLLFES--GLE--KLCDEVIVVYAPEEIR-------IKRLMERD 144 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT--TGG--GGSSEEEEEE--HHHH-------HHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEE-cchhhhh--hHh--hhhceEEEEECCHHHH-------HHHHHhhC
Confidence 1344555444443321 1122456666 3432211 111 1479999999999999 99998884
No 71
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.09 E-value=5.7e-10 Score=96.49 Aligned_cols=121 Identities=12% Similarity=0.064 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-----CCcccH--------------
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-----GKLVPE-------------- 124 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-----g~~ip~-------------- 124 (219)
..|.|+|.+||||||+++.|.+++|+++|+.|.+.++.+.++++..+.+.+.+.. ...+..
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 5789999999999999999999999999999999999988888777777654411 111221
Q ss_pred ----HHHHHHHHHHHHhcc-----------c--cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccch
Q 027791 125 ----DVIFALLSKRLEEGY-----------Y--RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVI 187 (219)
Q Consensus 125 ----e~i~~Ll~~~l~~~~-----------~--~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~ 187 (219)
.+++..+..++.+.. . ....-+|+| .|.-.+ ..... ...|.+|++++|+++.
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~e-vPLL~E-~~~~~--~~~D~iv~V~a~~e~r------- 150 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLD-APTLFE-TKTFT--YFVSASVVVSCSEERQ------- 150 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEE-echhhc-cCchh--hcCCeEEEEECCHHHH-------
Confidence 123333322221110 0 112245666 333222 11011 1359999999999999
Q ss_pred hhhhhcCC
Q 027791 188 LNEQVDGS 195 (219)
Q Consensus 188 ~~Rl~~R~ 195 (219)
.+|+.+|+
T Consensus 151 i~RL~~R~ 158 (244)
T PTZ00451 151 IERLRKRN 158 (244)
T ss_pred HHHHHHcC
Confidence 99999884
No 72
>PRK13976 thymidylate kinase; Provisional
Probab=99.08 E-value=3e-09 Score=89.88 Aligned_cols=119 Identities=13% Similarity=0.025 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCC-----CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHH-HHHHHHHHHh
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEV-----PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI-FALLSKRLEE 137 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~-----~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i-~~Ll~~~l~~ 137 (219)
+.|+|.|+.||||||+++.|++.|.- .++ +.++ +.++++++.+++.+.....+.+... .-+...|.++
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~----~~~e--P~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~ 74 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVV----LTRE--PGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH 74 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceE----EeeC--CCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999998732 222 1222 3567889999988864222333221 1111122211
Q ss_pred c------cccCCCeEEEeCccCCH------------HHHHHHHhh---CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 138 G------YYRGESGFILDGIPRTR------------IQAVSLEFC---YTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 138 ~------~~~~~~g~IlDG~Pr~~------------~qa~~l~~~---~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
. ....+.-+|.|-|..+. +....++.. ..||++|+|++|++++ ++|+.+++
T Consensus 75 ~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a-------~~Ri~~~~ 146 (209)
T PRK13976 75 FVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELS-------LSRADKNG 146 (209)
T ss_pred HHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHH-------HHHhcccc
Confidence 0 01224567888775431 112222221 3699999999999999 99986554
No 73
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.06 E-value=7.1e-10 Score=93.49 Aligned_cols=122 Identities=12% Similarity=0.116 Sum_probs=78.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHH-----HcCCccc-------------
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-----NEGKLVP------------- 123 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l-----~~g~~ip------------- 123 (219)
.|..|.|+|.+||||||+++.|++++|+++++.|.+.++.+.. .+..+.+.+.+ .+|. +.
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~-idR~~L~~~vF~d~~ 82 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQ-INRAMLRAIITESKE 82 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCC-cCHHHHHHHHhCCHH
Confidence 4578999999999999999999999999999999999988765 34444444332 1221 11
Q ss_pred -----HHHHHHHHHHHHHhcccc-CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 124 -----EDVIFALLSKRLEEGYYR-GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 124 -----~e~i~~Ll~~~l~~~~~~-~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+++++..+.+++.+.... ...-+|+| .|.-.+..-.+. ..+|.+|++++|+++. ++|+.+|+
T Consensus 83 ~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~e-ipLL~E~~~~~~--~~~D~vi~V~a~~e~r-------i~Rl~~Rd 150 (204)
T PRK14733 83 AKKWLEDYLHPVINKEIKKQVKESDTVMTIVD-IPLLGPYNFRHY--DYLKKVIVIKADLETR-------IRRLMERD 150 (204)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEE-echhhhccCchh--hhCCEEEEEECCHHHH-------HHHHHHcC
Confidence 134444444444322111 12345566 333222100001 1379999999999999 99999885
No 74
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.04 E-value=1.4e-09 Score=103.86 Aligned_cols=117 Identities=18% Similarity=0.183 Sum_probs=76.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhc
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEG 138 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~ 138 (219)
|-+-.+|+|+|.|||||||+++.||+++|+++||+|+.+.+.. |+.+.+++. .|+....+.-.+++.+-...
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~~- 75 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLED- 75 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 4567789999999999999999999999999999999888764 334445442 34443444444444332211
Q ss_pred cccCCCeEEEe--CccCCHHHHHHHHhhC-CCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 139 YYRGESGFILD--GIPRTRIQAVSLEFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 139 ~~~~~~g~IlD--G~Pr~~~qa~~l~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
...+|-- |.+.+.+..+.+.... .-..||||+++.+++ .+|+.++
T Consensus 76 ----~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l-------~~Rl~~~ 123 (542)
T PRK14021 76 ----FDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEA-------MERANRG 123 (542)
T ss_pred ----CCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHH-------HHHHhCC
Confidence 2233322 3455544444443221 224799999999999 9998643
No 75
>PRK07933 thymidylate kinase; Validated
Probab=99.02 E-value=2.1e-09 Score=90.99 Aligned_cols=119 Identities=16% Similarity=0.050 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcC--Cc-ccHHHHHHHH--HHH-
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEG--KL-VPEDVIFALL--SKR- 134 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g--~~-ip~e~i~~Ll--~~~- 134 (219)
|.|+|.|+.||||||+++.|++.+ |.+++-+ +.....+++.++.+++.+... .. ..... ..++ .+|
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~----~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~-~~llf~a~R~ 75 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL----AFPRYGRSVHADLAAEALHGRHGDLADSVYA-MATLFALDRA 75 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE----ecCCCCCCCccHHHHHHHcCCCCcccCCHHH-HHHHHhhhhh
Confidence 579999999999999999999988 4444422 222113456677777776532 11 11111 1111 111
Q ss_pred -----HHhccccCCCeEEEeCccCCH--HH------------HHHHHhh-------CCCcEEEEEEeChhhhcccccchh
Q 027791 135 -----LEEGYYRGESGFILDGIPRTR--IQ------------AVSLEFC-------YTMALAFLFLFLYGCCVIIGSVIL 188 (219)
Q Consensus 135 -----l~~~~~~~~~g~IlDG~Pr~~--~q------------a~~l~~~-------~~pd~VI~L~~~~e~l~~~~~~~~ 188 (219)
+... ...+.-+|.|.|..+. .| .+++... ..||++|+|++|++++ +
T Consensus 76 ~~~~~I~p~-l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a-------~ 147 (213)
T PRK07933 76 GARDELAGL-LAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELA-------A 147 (213)
T ss_pred hhHHHHHHH-HhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHH-------H
Confidence 2111 1224568889876543 11 1122211 2699999999999999 9
Q ss_pred hhhhcCC
Q 027791 189 NEQVDGS 195 (219)
Q Consensus 189 ~Rl~~R~ 195 (219)
+|+.+|.
T Consensus 148 ~Ri~~R~ 154 (213)
T PRK07933 148 ERARRRA 154 (213)
T ss_pred HHHHhhc
Confidence 9998885
No 76
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.02 E-value=1.2e-09 Score=100.52 Aligned_cols=119 Identities=16% Similarity=0.191 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcC-----Cccc---------------
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVP--------------- 123 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g-----~~ip--------------- 123 (219)
.+|.|+|.+||||||+++.|++ +|+++|+.|++.++.+..++.....+.+.+..+ ..+.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999986 899999999999998887765555554433211 1111
Q ss_pred ---HHHHHHHHHHHHHhccc-cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 124 ---EDVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 124 ---~e~i~~Ll~~~l~~~~~-~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
+.++..++..++.+... ..+..+|+.+.|.-.+.. +. ..+|.+|++++|.++. ++|+.+|
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~~--~~--~~~D~iI~V~ap~e~r-------i~Rl~~r 144 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVESG--MA--PLFHLVVVVDADVEVR-------VRRLVEQ 144 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecCC--ch--hhCCEEEEEECCHHHH-------HHHHHhc
Confidence 12334444433332210 123457777766433211 11 1369999999999999 9999874
No 77
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.01 E-value=1.4e-09 Score=96.82 Aligned_cols=120 Identities=16% Similarity=0.106 Sum_probs=73.0
Q ss_pred CCCCCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHH
Q 027791 56 AGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKR 134 (219)
Q Consensus 56 ~~~~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~ 134 (219)
....+.++..|+|+|+|||||||+++.|++++|+++++++..+.+.. +.+. .+.+. .|+....+.-..++.+.
T Consensus 126 ~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~--G~~i----~ei~~~~G~~~fr~~e~~~l~~l 199 (309)
T PRK08154 126 AGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA--GLSV----SEIFALYGQEGYRRLERRALERL 199 (309)
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh--CCCH----HHHHHHHCHHHHHHHHHHHHHHH
Confidence 34456778899999999999999999999999999999987766542 2222 22221 23222222323333333
Q ss_pred HHhccccCCCeEEEeCc--cCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 135 LEEGYYRGESGFILDGI--PRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 135 l~~~~~~~~~g~IlDG~--Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+... ...+|-.|. +......+.+ .....+|+|++|++++ .+|+.+|.
T Consensus 200 l~~~----~~~VI~~Ggg~v~~~~~~~~l---~~~~~~V~L~a~~e~~-------~~Rl~~r~ 248 (309)
T PRK08154 200 IAEH----EEMVLATGGGIVSEPATFDLL---LSHCYTVWLKASPEEH-------MARVRAQG 248 (309)
T ss_pred HhhC----CCEEEECCCchhCCHHHHHHH---HhCCEEEEEECCHHHH-------HHHHhcCC
Confidence 3221 222333332 2222222222 2245799999999999 99998763
No 78
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.00 E-value=2.8e-09 Score=87.15 Aligned_cols=112 Identities=15% Similarity=0.144 Sum_probs=68.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
...|+|+|++||||||+++.|++.+++++++.|..+.+... .++...... .|+..-.+.-.+++.. +..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g--~~i~~~~~~---~g~~~fr~~e~~~l~~-l~~----- 72 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADIGWVFDV---EGEEGFRDREEKVINE-LTE----- 72 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC--cCHhHHHHH---hCHHHHHHHHHHHHHH-HHh-----
Confidence 45799999999999999999999999999999886665432 111111110 1211111111222222 222
Q ss_pred CCeEEEe-C--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 143 ESGFILD-G--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 143 ~~g~IlD-G--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
..++|+. | .+.+....+.+.. .+.+|+|++|.+++ ++|+..+.
T Consensus 73 ~~~~vi~~ggg~v~~~~~~~~l~~---~~~vv~L~~~~e~~-------~~Ri~~~~ 118 (172)
T PRK05057 73 KQGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQ-------LARTQRDK 118 (172)
T ss_pred CCCEEEEcCCchhCCHHHHHHHHh---CCEEEEEeCCHHHH-------HHHHhCCC
Confidence 1234443 2 2333333344443 46899999999999 99997553
No 79
>PLN02199 shikimate kinase
Probab=98.98 E-value=5.6e-09 Score=92.45 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=72.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYY 140 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~~~ 140 (219)
++..|+|+|.+||||||+++.||+.+|+++|++|+++++... +.+ +.+++. .|+....+.-..++.+ +..
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G~s----I~eIf~~~GE~~FR~~E~e~L~~-L~~--- 171 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-GTS----VAEIFVHHGENFFRGKETDALKK-LSS--- 171 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-CCC----HHHHHHHhCHHHHHHHHHHHHHH-HHh---
Confidence 456899999999999999999999999999999999988643 222 233332 2433333333333333 221
Q ss_pred cCCCeEEEe---CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791 141 RGESGFILD---GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVD 193 (219)
Q Consensus 141 ~~~~g~IlD---G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~ 193 (219)
..+.||. |.+...+..+.+. -..||+|+++.|++ ++|+.+
T Consensus 172 --~~~~VIStGGG~V~~~~n~~~L~----~G~vV~Ldas~E~l-------~~RL~~ 214 (303)
T PLN02199 172 --RYQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEAL-------AHRIAA 214 (303)
T ss_pred --cCCEEEECCCcccCCHHHHHHHh----CCeEEEEECCHHHH-------HHHHhh
Confidence 1233443 3343333333343 25799999999999 999984
No 80
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.97 E-value=1.3e-09 Score=91.17 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=76.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH------cCCccc----------------
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN------EGKLVP---------------- 123 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~------~g~~ip---------------- 123 (219)
|.|+|++||||||+++.|+ ++|+++|+.|++.++.+.++.+..+.+.+.+. +|. +.
T Consensus 2 i~itG~~gsGKst~~~~l~-~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~-idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 2 IGITGMIGGGKSTALKILE-ELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGK-PNRKKISEIVFNDEEKLK 79 (196)
T ss_pred EEEECCCCccHHHHHHHHH-HCCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCc-cCHHHHHHHHhCCHHHHH
Confidence 6899999999999999986 47999999999999988877776666655431 122 11
Q ss_pred --HHHHHHHHHHHHHhccc-cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 124 --EDVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 124 --~e~i~~Ll~~~l~~~~~-~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+++++.++.+.+.+... .....+|+-..|.-.+. ... ..+|.+|++++|+++. .+|+.+|.
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~-~~~---~~~D~vi~V~a~~e~r-------~~RL~~R~ 143 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFET-DAY---TLCDATVTVDSDPEES-------ILRTISRD 143 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEc-Cch---hhCCEEEEEECCHHHH-------HHHHHHcC
Confidence 13444444433322110 01123444445543221 100 1369999999999999 99999984
No 81
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.95 E-value=7.3e-09 Score=84.27 Aligned_cols=108 Identities=16% Similarity=0.004 Sum_probs=63.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHH----HHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV----IFALL 131 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~----i~~Ll 131 (219)
.+|..|+|+|+|||||||+++.|++++. ..+++. |-+++.+... +.....+. ....+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~-d~~r~~~~~~-------------~~~~~~~~~~~~~~~~l 70 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG-DELREILGHY-------------GYDKQSRIEMALKRAKL 70 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec-HHHHhhcCCC-------------CCCHHHHHHHHHHHHHH
Confidence 4677899999999999999999999885 455544 3445433211 00001111 11112
Q ss_pred HHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791 132 SKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVD 193 (219)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~ 193 (219)
...+. ..+..+|+||........+.......+..+|+|++|++++ .+|..+
T Consensus 71 ~~~l~----~~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~-------~~R~~~ 121 (176)
T PRK05541 71 AKFLA----DQGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEEL-------IRRDQK 121 (176)
T ss_pred HHHHH----hCCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHH-------HHhchh
Confidence 22222 1245688887532111112222234556899999999999 999764
No 82
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.95 E-value=3.9e-09 Score=88.83 Aligned_cols=123 Identities=10% Similarity=0.038 Sum_probs=76.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHH-----H---cCC-ccc--------
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-----N---EGK-LVP-------- 123 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l-----~---~g~-~ip-------- 123 (219)
+.++.|.|+|++||||||+++.|++ +|+++++.|.+.++.+.++.+..+.+...+ . .|. .+.
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 3557899999999999999999985 999999999999888776555444443322 1 111 021
Q ss_pred ----------HHHHHHHHHHHHHhcc--c-cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhh
Q 027791 124 ----------EDVIFALLSKRLEEGY--Y-RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNE 190 (219)
Q Consensus 124 ----------~e~i~~Ll~~~l~~~~--~-~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~R 190 (219)
+.+++..+.+.+.+.. + ..+..+|+-+.|.-.+. . + ...+|.+|++++|++++ .+|
T Consensus 82 f~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~-~-~--~~~~d~ii~V~a~~e~~-------~~R 150 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFES-G-G--DAGLDFIVVVAADTELR-------LER 150 (208)
T ss_pred hCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeec-C-c--hhcCCeEEEEECCHHHH-------HHH
Confidence 1223333333332211 0 11224555445432221 1 1 12469999999999999 999
Q ss_pred hhcCC
Q 027791 191 QVDGS 195 (219)
Q Consensus 191 l~~R~ 195 (219)
+.+|.
T Consensus 151 l~~R~ 155 (208)
T PRK14731 151 AVQRG 155 (208)
T ss_pred HHHcC
Confidence 99985
No 83
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.94 E-value=8e-09 Score=84.21 Aligned_cols=121 Identities=14% Similarity=0.105 Sum_probs=67.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCC--eeccchhHHhhcCCCchhHHHHHHHHH-cC--CcccHHH---HHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVN-EG--KLVPEDV---IFALLSKR 134 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~--~Is~~dllr~~~~~~s~lg~~i~~~l~-~g--~~ip~e~---i~~Ll~~~ 134 (219)
+..|++.|+|||||||+++.|++.++.+ |++.|++... +....... .+.+. ++ ...+++. ....+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 77 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA-LPLKCQDA---EGGIEFDGDGGVSPGPEFRLLEGAWYEA 77 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh-cChhhccc---ccccccCccCCcccchHHHHHHHHHHHH
Confidence 4578999999999999999999998665 4566665433 22111000 00000 11 1111111 22222222
Q ss_pred HHhccccCCCeEEEeC-ccCCHHHHHHHHhhC-CCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 135 LEEGYYRGESGFILDG-IPRTRIQAVSLEFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 135 l~~~~~~~~~g~IlDG-~Pr~~~qa~~l~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+.... ..+..+|+|. ++......+.+.... .+...|+++||.+++ .+|+.+|.
T Consensus 78 ~~~~l-~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l-------~~R~~~R~ 132 (175)
T cd00227 78 VAAMA-RAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVA-------EGRETARG 132 (175)
T ss_pred HHHHH-hCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHH-------HHHHHhcC
Confidence 22211 2356789996 442222223333222 345799999999999 99999884
No 84
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.93 E-value=9.7e-09 Score=88.32 Aligned_cols=108 Identities=17% Similarity=0.216 Sum_probs=65.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHc---CC--CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~l---g~--~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~ 139 (219)
.|+|+|+|||||||+|+.|++.+ +. .+++. |.+++....... ...+. ..+....++...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~~~---~~e~~-------~~~~~~~~i~~~l~~-- 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVWKE---KYEEF-------IRDSTLYLIKTALKN-- 67 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHhhH---HhHHH-------HHHHHHHHHHHHHhC--
Confidence 37899999999999999999987 33 44444 445554321111 00111 112233344444433
Q ss_pred ccCCCeEEEeCccCCHHHHHHHH----hhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 140 YRGESGFILDGIPRTRIQAVSLE----FCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 140 ~~~~~g~IlDG~Pr~~~qa~~l~----~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+..+|+|+..........+. ....+..+|++++|.|++ ++|..+|.
T Consensus 68 ---~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~-------~~Rn~~R~ 117 (249)
T TIGR03574 68 ---KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTL-------LRRNIERG 117 (249)
T ss_pred ---CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHH-------HHHHHhCC
Confidence 34589998754433333332 223467899999999999 99988774
No 85
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.92 E-value=6.7e-09 Score=85.51 Aligned_cols=119 Identities=14% Similarity=0.070 Sum_probs=65.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc-----
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY----- 139 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~----- 139 (219)
.|+|.|++||||||+++.|++.+++.++.-.. .. -....++ ++....+...........++..+.++..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~--~~-~~~~~~~---l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~ 74 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPV--EP-DVEGNPF---LEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH 74 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccccccc--cc-cCCCCCC---HHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 37899999999999999999988876553211 00 0011111 1222211100111111112222222211
Q ss_pred ccCCCeEEEeCccCCHH--------H-------HH----HHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 140 YRGESGFILDGIPRTRI--------Q-------AV----SLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 140 ~~~~~g~IlDG~Pr~~~--------q-------a~----~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
...+..+|+|.+|.+.. + .+ .+.. ...||++|+|+++++++ ++|+.+|..
T Consensus 75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~-------~~Ri~~R~r 147 (193)
T cd01673 75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETC-------LKRIKKRGR 147 (193)
T ss_pred cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHH-------HHHHHhcCc
Confidence 11356789998876421 0 11 1111 13699999999999999 999988864
No 86
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.92 E-value=5.3e-09 Score=98.66 Aligned_cols=109 Identities=13% Similarity=0.143 Sum_probs=67.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhccccC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
|+|+|+|+|||||||+++.|++++|++++++|+++.+.. +.+. .+++. .|+....+.-.+.+++-...
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~--g~~i----~~i~~~~Ge~~fr~~E~~~l~~l~~~----- 69 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERRE--GRSV----RRIFEEDGEEYFRLKEKELLRELVER----- 69 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHc--CCCH----HHHHHHhhhHHHHHHHHHHHHHHhhc-----
Confidence 579999999999999999999999999999999887742 2222 22221 23322223333333322111
Q ss_pred CCeEEEeC--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 143 ESGFILDG--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 143 ~~g~IlDG--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
...+|-.| .+.+....+.+.. +.+|+|+++++++ .+|+.++
T Consensus 70 ~~~Vis~Gggvv~~~~~r~~l~~----~~vI~L~as~e~l-------~~Rl~~~ 112 (488)
T PRK13951 70 DNVVVATGGGVVIDPENRELLKK----EKTLFLYAPPEVL-------MERVTTE 112 (488)
T ss_pred CCEEEECCCccccChHHHHHHhc----CeEEEEECCHHHH-------HHHhccC
Confidence 12222233 2333334444432 4699999999999 9999764
No 87
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.92 E-value=1.7e-08 Score=85.53 Aligned_cols=124 Identities=11% Similarity=-0.004 Sum_probs=68.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccc-hhHHhhc-CCCchhHHH------HHHHHHcCC---cccHHHHHHHHHH
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMG-SLVRQEL-SPRSALYKQ------IANAVNEGK---LVPEDVIFALLSK 133 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~-dllr~~~-~~~s~lg~~------i~~~l~~g~---~ip~e~i~~Ll~~ 133 (219)
.|+|.|..||||||+++.|+++++..++... ....... +.++++++. ++.+..+.. ..+.....-++..
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 3789999999999999999999987655332 1111000 011222221 333333222 1222222222233
Q ss_pred HHHhc------cccCCCeEEEeCccCCHH-H--------------HHHHH--------hhCCCcEEEEEEeChhhhcccc
Q 027791 134 RLEEG------YYRGESGFILDGIPRTRI-Q--------------AVSLE--------FCYTMALAFLFLFLYGCCVIIG 184 (219)
Q Consensus 134 ~l~~~------~~~~~~g~IlDG~Pr~~~-q--------------a~~l~--------~~~~pd~VI~L~~~~e~l~~~~ 184 (219)
++++. ....+..+|+|.++.+.. . .+.+. ....||++|+|++|++++
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~---- 156 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEV---- 156 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHH----
Confidence 33221 012345789998854321 0 11111 113699999999999999
Q ss_pred cchhhhhhcCC
Q 027791 185 SVILNEQVDGS 195 (219)
Q Consensus 185 ~~~~~Rl~~R~ 195 (219)
++|+.+|.
T Consensus 157 ---~~Ri~~R~ 164 (219)
T cd02030 157 ---QKRIKKRG 164 (219)
T ss_pred ---HHHHHHcC
Confidence 99998885
No 88
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.89 E-value=8e-10 Score=84.03 Aligned_cols=114 Identities=15% Similarity=0.009 Sum_probs=58.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc-ccCCC
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY-YRGES 144 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~-~~~~~ 144 (219)
|+|.|+|||||||+++.|+++++..++ +.............. ...........+....++....+... .....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIR---DIAPEEDIVDSIDDN---PDWKENKRLDMEFQDELLDSIIQAIRRMNKGR 74 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHH---HHHHHTTSHSSHCCH---HCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHH---HHHHhcCCccccccc---chhhhhhhhhhhhHHHHHHHHHHhhcccccCC
Confidence 689999999999999999999822222 111111110000000 00112233333333333322222110 12456
Q ss_pred eEEEeCccCCHHHHHHHHhhCCCcEE-EEEEeChhhhcccccchhhhhhcCCCCC
Q 027791 145 GFILDGIPRTRIQAVSLEFCYTMALA-FLFLFLYGCCVIIGSVILNEQVDGSLCL 198 (219)
Q Consensus 145 g~IlDG~Pr~~~qa~~l~~~~~pd~V-I~L~~~~e~l~~~~~~~~~Rl~~R~~~~ 198 (219)
.+|+|+........ ...+.. |+|+||++++ .+|+.+|....
T Consensus 75 ~~iid~~~~~~~~~------~~~~~~~i~L~~~~e~~-------~~R~~~R~~~~ 116 (129)
T PF13238_consen 75 NIIIDGILSNLELE------RLFDIKFIFLDCSPEEL-------RKRLKKRGRKE 116 (129)
T ss_dssp CEEEEESSEEECET------TEEEESSEEEE--HHHH-------HHHHHCTTTSC
T ss_pred cEEEecccchhccc------ccceeeEEEEECCHHHH-------HHHHHhCCCCC
Confidence 78999875432111 012223 9999999999 99999986543
No 89
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.88 E-value=2.3e-08 Score=82.20 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccH-------HHHHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE-------DVIFALLSKRLE 136 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~-------e~i~~Ll~~~l~ 136 (219)
-.++++|++||||||+++.|+..++..+++.+++.... .++.. ..|....+ ..+.+.......
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~---------~~r~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 73 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK---------NIDKM-SQGIPLTDEDRLPWLERLNDASYSLYK 73 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh---------HHHHH-hcCCCCCcccchHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999888877652210 11111 12221111 122222222111
Q ss_pred hccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 137 EGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 137 ~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
....|+|+..+. ...+.+.+.+...+..+|+|+++++++ .+|+.+|.
T Consensus 74 ----~~~~g~iv~s~~-~~~~R~~~r~~~~~~~~v~l~a~~~~l-------~~Rl~~R~ 120 (176)
T PRK09825 74 ----KNETGFIVCSSL-KKQYRDILRKSSPNVHFLWLDGDYETI-------LARMQRRA 120 (176)
T ss_pred ----cCCCEEEEEEec-CHHHHHHHHhhCCCEEEEEEeCCHHHH-------HHHHhccc
Confidence 135688875553 333445555555667899999999999 99999996
No 90
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.88 E-value=9.3e-09 Score=84.27 Aligned_cols=118 Identities=12% Similarity=0.030 Sum_probs=73.7
Q ss_pred EEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHH-HHH-------HHhcc
Q 027791 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL-SKR-------LEEGY 139 (219)
Q Consensus 68 l~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll-~~~-------l~~~~ 139 (219)
|.|++||||||+++.|++.+.-..+.. +...-+..++.++.+++++......+.....-+. ..+ +...
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~---~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~- 76 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKV---IITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPA- 76 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEE---EEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHH-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 689999999999999999884443321 1112245678999999998855444443222221 111 1111
Q ss_pred ccCCCeEEEeCccCC------------HHHHHHHH-hhC--CCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 140 YRGESGFILDGIPRT------------RIQAVSLE-FCY--TMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 140 ~~~~~g~IlDG~Pr~------------~~qa~~l~-~~~--~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
...+.-+|+|-|..+ .+....+. ... .||++|+|++++++. ++|+.+|..
T Consensus 77 l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~-------~~R~~~r~~ 141 (186)
T PF02223_consen 77 LKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEA-------LKRIAKRGE 141 (186)
T ss_dssp HHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHH-------HHHHHHTSS
T ss_pred HcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHH-------HHHHHcCCc
Confidence 123567888965321 22222222 223 899999999999999 999999976
No 91
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.83 E-value=9e-09 Score=82.81 Aligned_cols=103 Identities=17% Similarity=0.081 Sum_probs=65.4
Q ss_pred CCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhccccCCCeEEEe-
Q 027791 72 PGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRGESGFILD- 149 (219)
Q Consensus 72 PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~~~~~~~g~IlD- 149 (219)
|||||||+++.||+.+|++++++|+++.+... ..+.+++. .|+....+.-..++.+-+. .+..+|--
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g------~si~~i~~~~G~~~fr~~E~~~l~~l~~-----~~~~VIa~G 69 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG------MSISEIFAEEGEEAFRELESEALRELLK-----ENNCVIACG 69 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT------SHHHHHHHHHHHHHHHHHHHHHHHHHHC-----SSSEEEEE-
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC------CcHHHHHHcCChHHHHHHHHHHHHHHhc-----cCcEEEeCC
Confidence 79999999999999999999999998877532 33334332 2222222233333332222 12333332
Q ss_pred -CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 150 -GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 150 -G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
|.+...+..+.+.+ ...||+|+.+.+++ .+|+..+.
T Consensus 70 GG~~~~~~~~~~L~~---~g~vI~L~~~~~~l-------~~Rl~~~~ 106 (158)
T PF01202_consen 70 GGIVLKEENRELLKE---NGLVIYLDADPEEL-------AERLRARD 106 (158)
T ss_dssp TTGGGSHHHHHHHHH---HSEEEEEE--HHHH-------HHHHHHHC
T ss_pred CCCcCcHHHHHHHHh---CCEEEEEeCCHHHH-------HHHHhCCC
Confidence 46667776666763 35799999999999 99996554
No 92
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.80 E-value=4.2e-08 Score=79.51 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=61.5
Q ss_pred EcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHH-------HHHHHHHHHHHhcccc
Q 027791 69 IGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED-------VIFALLSKRLEEGYYR 141 (219)
Q Consensus 69 ~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e-------~i~~Ll~~~l~~~~~~ 141 (219)
+|++||||||+++.|++.+|.++++.|.+..... ++. ...|....++ .+......... .
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~ 66 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IEK-MASGEPLNDDDRKPWLQALNDAAFAMQR----T 66 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hcc-ccCCCCCChhhHHHHHHHHHHHHHHHHH----c
Confidence 5999999999999999999999998865421100 000 0011111111 11111111111 1
Q ss_pred CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 142 GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
....+|+ .......+.+.+.+...+..+|+|++|++++ .+|+.+|.
T Consensus 67 ~~~~viv-~s~~~~~~r~~~~~~~~~~~~v~l~a~~~~l-------~~Rl~~R~ 112 (163)
T PRK11545 67 NKVSLIV-CSALKKHYRDLLREGNPNLSFIYLKGDFDVI-------ESRLKARK 112 (163)
T ss_pred CCceEEE-EecchHHHHHHHHccCCCEEEEEEECCHHHH-------HHHHHhcc
Confidence 2334455 3223334445555545567899999999999 99999996
No 93
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.80 E-value=6.1e-08 Score=81.25 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCc-----ccHH-------------
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VPED------------- 125 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~-----ip~e------------- 125 (219)
..|-++|..+|||||+++.+- .+|+++|+.|-+.|+...+++|..+.+.+.+...-+ +..+
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 457799999999999999985 999999999999999999999999888876643211 1111
Q ss_pred -----HHHHHHHHHH----HhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 126 -----VIFALLSKRL----EEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 126 -----~i~~Ll~~~l----~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
++...+...| ......+.+-+|+| .|.-.+- . +.. ....+|.+.||.++. ++|+..|+
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~-~-~~~--~~~~tvvV~cd~~~Q-------l~Rl~~Rd 147 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA-K-LLK--ICHKTVVVTCDEELQ-------LERLVERD 147 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH-h-HHh--heeeEEEEEECcHHH-------HHHHHHhc
Confidence 1222222222 22122344445555 5544332 2 222 256799999999999 99999887
No 94
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=2.6e-08 Score=80.48 Aligned_cols=114 Identities=17% Similarity=0.164 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHH---HHHhccc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSK---RLEEGYY 140 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~---~l~~~~~ 140 (219)
-.|+++|+.||||||+++.|++++++++++.||+--. .-.+.+.+|..+.|+-....|++ ......
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~----------~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l- 81 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPP----------ANVEKMTQGIPLNDDDRWPWLKKIAVELRKAL- 81 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCH----------HHHHHHhcCCCCCcccccHHHHHHHHHHHHHh-
Confidence 3678999999999999999999999999999886322 22455777887777543333321 111111
Q ss_pred cCCCeEEEeCccCCHHHHHHHHhhC----------CCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 141 RGESGFILDGIPRTRIQAVSLEFCY----------TMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 141 ~~~~g~IlDG~Pr~~~qa~~l~~~~----------~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
....++|+-.......+.+++.+.+ .--.+|+|.++.+++ ..|+.+|.
T Consensus 82 ~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi-------~~Rl~~R~ 139 (191)
T KOG3354|consen 82 ASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVI-------LKRLKKRK 139 (191)
T ss_pred hcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHH-------HHHHhhcc
Confidence 1357899977655556667775522 123689999999999 99999996
No 95
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.75 E-value=4.4e-08 Score=81.87 Aligned_cols=124 Identities=13% Similarity=0.132 Sum_probs=68.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~ 137 (219)
.++..|.|.|++||||||+++.|++.+ .+.+++.|+....... .+..+............+.+.+.+.+..-...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 81 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSH--LSFEERVKTNYDHPDAFDHDLLIEHLKALKAG 81 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCccc--CCHHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence 578899999999999999999999998 3456778776543211 01000000000000111112222222211110
Q ss_pred c-------------------cccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791 138 G-------------------YYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC 197 (219)
Q Consensus 138 ~-------------------~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~ 197 (219)
. ......-+|+||...-.. ..+. ..+|.+|++++|++++ ++|...|.+.
T Consensus 82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~~~--~~~d~~I~v~~~~~~~-------~~R~~~Rd~~ 149 (209)
T PRK05480 82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ERLR--DLMDIKIFVDTPLDIR-------LIRRLKRDVN 149 (209)
T ss_pred CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hhHh--hhhceeEEEeCChhHH-------HHHHHhhcch
Confidence 0 001223578898743211 1111 1368999999999999 9999888753
No 96
>PRK06696 uridine kinase; Validated
Probab=98.75 E-value=1.6e-08 Score=85.81 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCe--eccchhHHh
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPH--ISMGSLVRQ 100 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~--Is~~dllr~ 100 (219)
.++..|.|.|++||||||+|+.|++.+ |.++ +++||+...
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 467899999999999999999999998 5555 458877643
No 97
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.72 E-value=4.1e-08 Score=81.72 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=32.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHc-CCCeeccchhHHhh
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQE 101 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l-g~~~Is~~dllr~~ 101 (219)
|.|.|+|||||||+|+.|++.+ ++.+|++|++....
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~ 38 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPE 38 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCc
Confidence 6789999999999999999999 79999999987653
No 98
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.71 E-value=1.5e-07 Score=77.55 Aligned_cols=116 Identities=9% Similarity=0.009 Sum_probs=65.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCC-----chhHHHHHHHHHcCCcccHHHHH-----H---H
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR-----SALYKQIANAVNEGKLVPEDVIF-----A---L 130 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~-----s~lg~~i~~~l~~g~~ip~e~i~-----~---L 130 (219)
..++|+||+||||||+++.|+..++..++..+..+....... ...++.....++++... ..+.. . -
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~yg~~~~ 81 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFA-LSWHANGLYYGVGIE 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchh-hHHHHhCCccCCcHH
Confidence 478999999999999999999988766555444333221110 01123333334443221 11110 0 0
Q ss_pred HHHHHHhccccCCCeEEEeCccCCHHHHHHHHh-hCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 131 LSKRLEEGYYRGESGFILDGIPRTRIQAVSLEF-CYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+...+.. +..+|+||. ......+.. ...+..+|+|++|.+++ .+|+.+|.
T Consensus 82 ~~~~l~~-----g~~VI~~G~---~~~~~~~~~~~~~~~~vi~l~~s~e~l-------~~RL~~R~ 132 (186)
T PRK10078 82 IDLWLHA-----GFDVLVNGS---RAHLPQARARYQSALLPVCLQVSPEIL-------RQRLENRG 132 (186)
T ss_pred HHHHHhC-----CCEEEEeCh---HHHHHHHHHHcCCCEEEEEEeCCHHHH-------HHHHHHhC
Confidence 2223322 345888877 222222222 23456789999999999 99998773
No 99
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.70 E-value=4.6e-08 Score=81.86 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=68.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHcC---CCeeccchhHHhhcCCC----------ch--h-HHHHHH---HHHcCC
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPR----------SA--L-YKQIAN---AVNEGK 120 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg---~~~Is~~dllr~~~~~~----------s~--l-g~~i~~---~l~~g~ 120 (219)
+.++..|.|.|++||||||+++.|+..++ +.+++.|+.+....... .+ . ...+.+ .+.+|+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 35778899999999999999999998875 56777776543210000 00 0 000000 011221
Q ss_pred cccHHHHHHHHHHHHHhc-cccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791 121 LVPEDVIFALLSKRLEEG-YYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC 197 (219)
Q Consensus 121 ~ip~e~i~~Ll~~~l~~~-~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~ 197 (219)
.+.-.........+..+. ......-+|+||++.-.+ +.+.. ..|.+|+++++.++. +.|+.+|.+-
T Consensus 83 ~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~--~~~~~--~~d~~I~v~~~~~~~-------l~R~~~R~~~ 149 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFD--ERLRD--LMDLKIFVDTPLDIR-------LIRRIERDIN 149 (207)
T ss_pred CEecccceeecCCCCCceEEeCCCCEEEEEehhhhch--HhHHH--hCCEEEEEECChhHH-------HHHHHHHHHH
Confidence 111000000000000000 001234588999865322 12222 368999999999999 9998888643
No 100
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.70 E-value=9.1e-08 Score=79.69 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=63.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcc-------cHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV-------PEDVIFAL 130 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~i-------p~e~i~~L 130 (219)
..|..+++.|+|||||||++..+.+.+ ++.+|+.|++ +...+ ....+... ..... ...+...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~p----~~~~~~~~--~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFHP----DYDELLKA--DPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGST----THHHHHHH--HCCCTHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhcc----chhhhhhh--hhhhhHHHHHHHHHHHHHHH
Confidence 578889999999999999999999987 7788888764 44433 22222111 01111 11234444
Q ss_pred HHHHHHhccccCCCeEEEeCccCCHHHHH-HH---HhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 131 LSKRLEEGYYRGESGFILDGIPRTRIQAV-SL---EFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDG~Pr~~~qa~-~l---~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
+...+.+ ...+|+||...+.+... .+ .+.+.--.++++.+++++. ++|...|
T Consensus 86 ~~~a~~~-----~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s-------~~rv~~R 141 (199)
T PF06414_consen 86 IEYAIEN-----RYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELS-------IERVRQR 141 (199)
T ss_dssp HHHHHHC-----T--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHH-------HHHHHHH
T ss_pred HHHHHHc-----CCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHH-------HHHHHHH
Confidence 4444443 45799999766655544 22 3323334678888999999 7777665
No 101
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=1.1e-07 Score=76.29 Aligned_cols=109 Identities=12% Similarity=0.022 Sum_probs=73.8
Q ss_pred EcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHH---HHHHHhccccCCCe
Q 027791 69 IGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL---SKRLEEGYYRGESG 145 (219)
Q Consensus 69 ~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll---~~~l~~~~~~~~~g 145 (219)
+|..||||||+++.||+++|..+|+-|||--. .-.+.+.+|.++.|+-....| ..++.+.. ..+..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~----------aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~-~~~~~ 69 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPP----------ANIEKMSAGIPLNDDDRWPWLEALGDAAASLA-QKNKH 69 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCH----------HHHHHHhCCCCCCcchhhHHHHHHHHHHHHhh-cCCCc
Confidence 58999999999999999999999998876321 112346788888886544433 33443322 22334
Q ss_pred EEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 146 FILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 146 ~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
.|+-.......+.+.+....+--.+|||+.+.+++ ++|+..|.
T Consensus 70 ~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i-------~~Rm~~R~ 112 (161)
T COG3265 70 VVIACSALKRSYRDLLREANPGLRFVYLDGDFDLI-------LERMKARK 112 (161)
T ss_pred eEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHH-------HHHHHhcc
Confidence 55554444444555554433224689999999999 99999886
No 102
>PRK07667 uridine kinase; Provisional
Probab=98.69 E-value=4.6e-08 Score=81.26 Aligned_cols=122 Identities=4% Similarity=-0.056 Sum_probs=67.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHhhcCC----Cchh-------------HHHHHHHHHcC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSP----RSAL-------------YKQIANAVNEG 119 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~~~~~----~s~l-------------g~~i~~~l~~g 119 (219)
....|.|.|+|||||||+++.|++.+ ++.+++.++.+...... ..+. ...+-..+.++
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 33788999999999999999999986 34588999876543311 0100 01111112222
Q ss_pred CcccHHHHHHHHHHHHHhc-cccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 120 KLVPEDVIFALLSKRLEEG-YYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 120 ~~ip~e~i~~Ll~~~l~~~-~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+.+.-..+........... ......-+|+||.-.. +.. +.. ..|.+|++++|+++. ++|+.+|.
T Consensus 96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~--~~~-~~~--~~d~~v~V~~~~~~~-------~~R~~~r~ 160 (193)
T PRK07667 96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQ--RKE-WRD--FFHYMVYLDCPRETR-------FLRESEET 160 (193)
T ss_pred CeEEEeeeccccccccccceecCCCCEEEEEehhhh--hhh-HHh--hceEEEEEECCHHHH-------HHHHhccc
Confidence 2111000000000000000 0012356788986421 121 222 369999999999999 99998874
No 103
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.68 E-value=1.1e-07 Score=80.93 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhh
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~ 101 (219)
++.|.|.||+||||||+++.|++++++++++.|+++|..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 367999999999999999999999999999999988755
No 104
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.66 E-value=3.8e-08 Score=81.00 Aligned_cols=117 Identities=13% Similarity=0.015 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc----CCCeeccchhHHhhcCCCchh----HHHHHHHHHcCCcccHHH--------H
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL----EVPHISMGSLVRQELSPRSAL----YKQIANAVNEGKLVPEDV--------I 127 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l----g~~~Is~~dllr~~~~~~s~l----g~~i~~~l~~g~~ip~e~--------i 127 (219)
..|+|+||+||||+|+++.|.+++ ...+..+..-.|..-..+... -+++.+.+++|..+.... -
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~ 82 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTS 82 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccC
Confidence 468899999999999999999985 223322322222211112221 255666677776554321 1
Q ss_pred HHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEE-eChhhhcccccchhhhhhcCC
Q 027791 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFL-FLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 128 ~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~-~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
...+.+.+.+ ++.+|+|+.|....+..... ..| .+|++. .+.+.+ .+|+.+|.
T Consensus 83 ~~~i~~~~~~-----~~~~ild~~~~~~~~l~~~~--~~~-~vIfi~~~s~~~l-------~~rl~~R~ 136 (184)
T smart00072 83 KETIRQVAEQ-----GKHCLLDIDPQGVKQLRKAQ--LYP-IVIFIAPPSSEEL-------ERRLRGRG 136 (184)
T ss_pred HHHHHHHHHc-----CCeEEEEECHHHHHHHHHhC--CCc-EEEEEeCcCHHHH-------HHHHHhcC
Confidence 2233444432 46799999987776665432 223 789998 555567 88998874
No 105
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.65 E-value=1.8e-07 Score=88.90 Aligned_cols=101 Identities=12% Similarity=0.096 Sum_probs=73.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~ 139 (219)
+.++..|++.|+|||||||+|+.+++.+|+.+|+.|++- . -+.........+.+
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg-~-----------------------~~~~~~~a~~~L~~-- 419 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG-S-----------------------TQNCLTACERALDQ-- 419 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH-H-----------------------HHHHHHHHHHHHhC--
Confidence 356788999999999999999999999999999997641 1 01122333444443
Q ss_pred ccCCCeEEEeCccCCHHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 140 YRGESGFILDGIPRTRIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 140 ~~~~~g~IlDG~Pr~~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
+..+|+|..-.+..+.+.+.+ ...+-..|+|++|.+++ .+|...|..
T Consensus 420 ---G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~-------~~Rn~~R~~ 470 (526)
T TIGR01663 420 ---GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQA-------KHNIAFREL 470 (526)
T ss_pred ---CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHH-------HHHHHhhcc
Confidence 467999986666555444433 23456799999999999 999998865
No 106
>PRK12338 hypothetical protein; Provisional
Probab=98.65 E-value=3.7e-07 Score=81.80 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=38.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP 104 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~ 104 (219)
+|..|++.|+|||||||+|+.||+++|+.++..+|.+|+.+..
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~ 45 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG 45 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence 5678999999999999999999999999999888899987653
No 107
>PHA03132 thymidine kinase; Provisional
Probab=98.64 E-value=7.1e-07 Score=85.50 Aligned_cols=123 Identities=15% Similarity=0.059 Sum_probs=74.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCC----chhHHHHHHHHHcCCc--cc-HHHHH------
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR----SALYKQIANAVNEGKL--VP-EDVIF------ 128 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~----s~lg~~i~~~l~~g~~--ip-~e~i~------ 128 (219)
++++|+|.|+.||||||+++.|++.+|..++.+. +....+ +..++.+.+.+.++.. +. ...+.
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~----EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~F 331 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFP----EPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKF 331 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEe----CCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999866655432 222111 2356677776654421 22 21111
Q ss_pred ----HHHHHHHHhc---------cccCCCeEEEeCccCCHHH-----------------HHHHHhh--CCCcEEEEEEeC
Q 027791 129 ----ALLSKRLEEG---------YYRGESGFILDGIPRTRIQ-----------------AVSLEFC--YTMALAFLFLFL 176 (219)
Q Consensus 129 ----~Ll~~~l~~~---------~~~~~~g~IlDG~Pr~~~q-----------------a~~l~~~--~~pd~VI~L~~~ 176 (219)
.++..+++.. ....+.-+|+|-++.+..- ...+... ..||++|+|+++
T Consensus 332 A~Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~ 411 (580)
T PHA03132 332 ATPFRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLN 411 (580)
T ss_pred hhHHHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCC
Confidence 1111222111 1123456788987643211 1111221 258999999999
Q ss_pred hhhhcccccchhhhhhcCC
Q 027791 177 YGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 177 ~e~l~~~~~~~~~Rl~~R~ 195 (219)
++++ ++|+.+|.
T Consensus 412 pe~a-------lkRIkkRg 423 (580)
T PHA03132 412 SEEN-------LRRVKKRG 423 (580)
T ss_pred HHHH-------HHHHHhcC
Confidence 9999 99999885
No 108
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.64 E-value=4.7e-07 Score=72.26 Aligned_cols=106 Identities=19% Similarity=0.093 Sum_probs=61.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHc---CCCe--eccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHH--HHHHHhc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL---EVPH--ISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL--SKRLEEG 138 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l---g~~~--Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll--~~~l~~~ 138 (219)
++|.|+|||||||+++.|++.+ +..+ ++. |-+++.+......... -..+.+..+. .+.+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~~----------~~~~~~~~~~~~a~~l~-- 68 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSRE----------DREENIRRIAEVAKLLA-- 68 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCcc----------hHHHHHHHHHHHHHHHH--
Confidence 6799999999999999999998 6443 333 4455433211100000 0011111111 11122
Q ss_pred cccCCCeEEEeCccCCHHHHHHHHhhC--CCcEEEEEEeChhhhcccccchhhhhhc
Q 027791 139 YYRGESGFILDGIPRTRIQAVSLEFCY--TMALAFLFLFLYGCCVIIGSVILNEQVD 193 (219)
Q Consensus 139 ~~~~~~g~IlDG~Pr~~~qa~~l~~~~--~pd~VI~L~~~~e~l~~~~~~~~~Rl~~ 193 (219)
..+..+|+|..-....+...+.... .+..+|+|++|.+++ ++|-.+
T Consensus 69 --~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~-------~~R~~~ 116 (149)
T cd02027 69 --DAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVC-------EQRDPK 116 (149)
T ss_pred --hCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHH-------HHhCch
Confidence 1345688886544444444444433 456799999999999 888765
No 109
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.61 E-value=4.5e-07 Score=73.60 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=61.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHH--HHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA--LLSKR 134 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~--Ll~~~ 134 (219)
++..|+|+|+|||||||+++.|+..+ ++.+++.|++ ++.+..+......- .++.+.. .+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~----------r~~~~~~~~~~a~~ 71 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKED----------RDTNIRRIGFVANL 71 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhh----------HHHHHHHHHHHHHH
Confidence 45688999999999999999999987 2566776543 44332111100000 0011111 11111
Q ss_pred HHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhh
Q 027791 135 LEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQ 191 (219)
Q Consensus 135 l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl 191 (219)
+.. .+..+|+|+........+.+........+|+|++|.+++ .+|.
T Consensus 72 ~~~----~g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~-------~~R~ 117 (175)
T PRK00889 72 LTR----HGVIVLVSAISPYRETREEVRANIGNFLEVFVDAPLEVC-------EQRD 117 (175)
T ss_pred HHh----CCCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHH-------HHhC
Confidence 211 234567776422233344444444445799999999999 8884
No 110
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.61 E-value=2.2e-07 Score=79.33 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=36.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhh
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~ 101 (219)
++.|.|.|++||||||+++.|+++||+++++.|+++|..
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~ 42 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAV 42 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence 478999999999999999999999999999999988863
No 111
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.60 E-value=1.2e-07 Score=80.04 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I 92 (219)
..+.|+|.|+.|+||||+++.||++++.+++
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 3578999999999999999999999998776
No 112
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.60 E-value=1.1e-06 Score=77.13 Aligned_cols=134 Identities=15% Similarity=0.093 Sum_probs=77.6
Q ss_pred CCCCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeec---cchhHHhhcCC-CchhH---------HHHHHH-HHcCCcc
Q 027791 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS---MGSLVRQELSP-RSALY---------KQIANA-VNEGKLV 122 (219)
Q Consensus 57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is---~~dllr~~~~~-~s~lg---------~~i~~~-l~~g~~i 122 (219)
.........|++.|+.|||||++|+.||+++|+.|+. +|+++-...-. ..++. -.++.. .+....+
T Consensus 65 krf~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dl 144 (393)
T KOG3877|consen 65 KRFHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDL 144 (393)
T ss_pred hhhcccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccH
Confidence 3344566789999999999999999999999997775 44432221110 00000 011111 1111112
Q ss_pred cHHHHHHHHHHH-------HHhccccCCCeEEEeCccCCHH-HHHHH----------------------HhhCCCcEEEE
Q 027791 123 PEDVIFALLSKR-------LEEGYYRGESGFILDGIPRTRI-QAVSL----------------------EFCYTMALAFL 172 (219)
Q Consensus 123 p~e~i~~Ll~~~-------l~~~~~~~~~g~IlDG~Pr~~~-qa~~l----------------------~~~~~pd~VI~ 172 (219)
+..+...+-.-| ++.. ...+.|+|++-.|.+.- .++.+ .+.++|.+||+
T Consensus 145 sa~~Q~r~y~~R~~QY~dAL~Hi-L~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViY 223 (393)
T KOG3877|consen 145 SAAMQDRIYNCRFDQYLDALAHI-LNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIY 223 (393)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH-HhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEE
Confidence 222222222212 2221 23567999998886531 12221 11248999999
Q ss_pred EEeChhhhcccccchhhhhhcCCCCC
Q 027791 173 FLFLYGCCVIIGSVILNEQVDGSLCL 198 (219)
Q Consensus 173 L~~~~e~l~~~~~~~~~Rl~~R~~~~ 198 (219)
|+.|.+.+ .+++++|....
T Consensus 224 ld~Pv~~v-------~~~Ik~rg~~~ 242 (393)
T KOG3877|consen 224 LDTPVNKV-------LENIKRRGNTD 242 (393)
T ss_pred EcCCcHHH-------HHHHHhcCCCc
Confidence 99999999 99999987554
No 113
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.59 E-value=2e-07 Score=77.26 Aligned_cols=117 Identities=21% Similarity=0.216 Sum_probs=81.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHH-HH-----
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS-KR----- 134 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~-~~----- 134 (219)
.++.+|++.|...|||||++..|.+.+ .+-.....+++ --...++.|+.|-.++.+...+|+++++-+.+ +|
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l-~~~~~~~~l~~-FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESL-IPGLDPAELLR-FPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHH-HhccChHHhhh-cchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 477899999999999999999999988 33322223332 22456789999999999988999988776653 22
Q ss_pred -HHhccccCCCeEEEeCccCCH---HHHHHHHh---------hCCCcEEEEEEeChhhh
Q 027791 135 -LEEGYYRGESGFILDGIPRTR---IQAVSLEF---------CYTMALAFLFLFLYGCC 180 (219)
Q Consensus 135 -l~~~~~~~~~g~IlDG~Pr~~---~qa~~l~~---------~~~pd~VI~L~~~~e~l 180 (219)
|.+. ...+..+|+|-|..+- .-|+.++. +..||+|++|+++++.+
T Consensus 81 ~i~e~-l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~ 138 (208)
T KOG3327|consen 81 LIKEK-LAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDA 138 (208)
T ss_pred HHHHH-HhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHH
Confidence 2221 1245678999775431 22333321 24899999999999998
No 114
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.54 E-value=1.2e-06 Score=71.24 Aligned_cols=117 Identities=13% Similarity=0.060 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCe---eccchhHHhhcCCCch---h-HHHHHHHHHcCCcc--cHH-----HHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPH---ISMGSLVRQELSPRSA---L-YKQIANAVNEGKLV--PED-----VIFA 129 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~---Is~~dllr~~~~~~s~---l-g~~i~~~l~~g~~i--p~e-----~i~~ 129 (219)
..++|+|+|||||||+++.|+..++... +.....-+.....+.. . .+++.....++... ... -...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 4688999999999999999999875421 1100111111111110 0 11222222232210 000 0001
Q ss_pred HHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 130 LLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 130 Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
.+...+. .+..+|+||... ....+........+|+|+++.+++ .+|+.+|.
T Consensus 82 ~i~~~~~-----~g~~vv~~g~~~---~~~~~~~~~~~~~~i~l~~~~~~~-------~~Rl~~R~ 132 (179)
T TIGR02322 82 EIDQWLE-----AGDVVVVNGSRA---VLPEARQRYPNLLVVNITASPDVL-------AQRLAARG 132 (179)
T ss_pred HHHHHHh-----cCCEEEEECCHH---HHHHHHHHCCCcEEEEEECCHHHH-------HHHHHHcC
Confidence 1222222 235688998732 223333323345899999999999 99999884
No 115
>COG0645 Predicted kinase [General function prediction only]
Probab=98.53 E-value=1.2e-06 Score=71.54 Aligned_cols=118 Identities=14% Similarity=0.012 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCccc---HHHHHHHHHHHHHhccc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP---EDVIFALLSKRLEEGYY 140 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip---~e~i~~Ll~~~l~~~~~ 140 (219)
..+++.|.||+||||+++.|++.+|..+|..|+ +|+.+.+- |.-+. ...|..-+ +.+...+......-.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~-irk~L~g~-p~~~r----~~~g~ys~~~~~~vy~~l~~~A~l~l-- 73 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDV-IRKRLFGV-PEETR----GPAGLYSPAATAAVYDELLGRAELLL-- 73 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHH-HHHHhcCC-ccccc----CCCCCCcHHHHHHHHHHHHHHHHHHH--
Confidence 467899999999999999999999999999865 66666541 10000 00111111 111222222111111
Q ss_pred cCCCeEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 141 RGESGFILDGIPRTRIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 141 ~~~~g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
..+..+|+|+..-...+.+..... .-+...|+++++++++ .+|+..|.-
T Consensus 74 ~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~-------~~rl~aR~~ 126 (170)
T COG0645 74 SSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVL-------RGRLAARKG 126 (170)
T ss_pred hCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHH-------HHHHHHhCC
Confidence 235679999865555544433322 2345679999999999 999999975
No 116
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.51 E-value=2.2e-07 Score=76.02 Aligned_cols=109 Identities=17% Similarity=0.082 Sum_probs=69.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc-CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHH---HHHHhc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS---KRLEEG 138 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l-g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~---~~l~~~ 138 (219)
++.++++|.||+||||+.+...+++ ++.+++.|+++-+...... .-+.++.+. .+|.+....+.. +++.+.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~g--lve~rD~~R---klp~e~Q~~lq~~Aa~rI~~~ 78 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKG--LVEHRDEMR---KLPLENQRELQAEAAKRIAEM 78 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhC--CcccHHHHh---cCCHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999 8888999998876543210 011223332 345555544433 333322
Q ss_pred cccCCCeEEEeCccCCHH-------HHHHHHhhCCCcEEEEEEeChhhh
Q 027791 139 YYRGESGFILDGIPRTRI-------QAVSLEFCYTMALAFLFLFLYGCC 180 (219)
Q Consensus 139 ~~~~~~g~IlDG~Pr~~~-------qa~~l~~~~~pd~VI~L~~~~e~l 180 (219)
...+|+|++-.-.. --.+.-..+.||.+|.+.++++.+
T Consensus 79 ----~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~I 123 (189)
T COG2019 79 ----ALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEI 123 (189)
T ss_pred ----hhceEEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHH
Confidence 12288886521110 012222345799999999999988
No 117
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.51 E-value=8.7e-07 Score=84.05 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=38.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhh
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~ 101 (219)
.+++.|.|.||+||||||+++.|+++||+.+++.|+++|..
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 47789999999999999999999999999999999999974
No 118
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.49 E-value=2.4e-06 Score=69.96 Aligned_cols=108 Identities=20% Similarity=0.122 Sum_probs=62.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHH--HH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL--SK 133 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll--~~ 133 (219)
.++..|+|.|+|||||||+++.|+..+ | +.+++.+ -+++.+..+......- ..+.+..+. ..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d-~~r~~l~~~~~~~~~~----------~~~~~~~~~~~~~ 84 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD-NVRHGLNKDLGFSEED----------RKENIRRIGEVAK 84 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh-HHHhhhccccCCCHHH----------HHHHHHHHHHHHH
Confidence 466889999999999999999999987 3 3455544 3444332211110000 001111111 11
Q ss_pred HHHhccccCCCeEEEeCccCCHHHHHHHHhhC--CCcEEEEEEeChhhhcccccchhhh
Q 027791 134 RLEEGYYRGESGFILDGIPRTRIQAVSLEFCY--TMALAFLFLFLYGCCVIIGSVILNE 190 (219)
Q Consensus 134 ~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~--~pd~VI~L~~~~e~l~~~~~~~~~R 190 (219)
.+. ..+..+|+|..-....+.+.+.... .+..+|++++|.+++ .+|
T Consensus 85 ~~~----~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~-------~~R 132 (184)
T TIGR00455 85 LFV----RNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVC-------EQR 132 (184)
T ss_pred HHH----cCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHH-------HHh
Confidence 121 2356788887533344555554432 245789999999999 888
No 119
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.48 E-value=5.4e-07 Score=62.84 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l 87 (219)
|.+.|+|||||||+++.|++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 120
>COG4639 Predicted kinase [General function prediction only]
Probab=98.48 E-value=1.4e-06 Score=70.44 Aligned_cols=114 Identities=20% Similarity=0.183 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
..+++.|+|||||||+++.. ....++++.+++=+..... .++ ...++ .++.+.+++.+.+++.. ..+
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~lg~~---~~~----e~sqk---~~~~~~~~l~~~l~qrl-~~G 69 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLLGVS---ASK----ENSQK---NDELVWDILYKQLEQRL-RRG 69 (168)
T ss_pred eEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHhhhc---hhh----hhccc---cHHHHHHHHHHHHHHHH-HcC
Confidence 46889999999999999763 4578899988754332110 011 11111 23344444444444332 234
Q ss_pred CeEEEeCccCCHHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhh--hcCCCC
Q 027791 144 SGFILDGIPRTRIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQ--VDGSLC 197 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl--~~R~~~ 197 (219)
+-.|+|..-...++...+.. ......+|+|+.|.+.| .+|- ..|.++
T Consensus 70 k~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c-------~aRNk~~~Rqv~ 122 (168)
T COG4639 70 KFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELC-------LARNKLRERQVP 122 (168)
T ss_pred CeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHH-------HHHhhccchhCC
Confidence 67899987655555444432 23456789999999999 8884 444433
No 121
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.47 E-value=2e-06 Score=69.69 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=59.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc---CC--CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHH--HHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL--LSKR 134 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l---g~--~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~L--l~~~ 134 (219)
+|..|.|+|.|||||||+|+.|.++| |. .+++. |.+|..+...-....+-+. +.+..+ +.+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~----------e~~rr~~~~A~l 69 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDRE----------ENIRRIAEVAKL 69 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHH----------HHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHH----------HHHHHHHHHHHH
Confidence 46778899999999999999999988 44 34444 4566655443221111110 111111 1222
Q ss_pred HHhccccCCCeEEEeCccCCHHHHHHHHhhCC--CcEEEEEEeChhhhcccccchhhhhh
Q 027791 135 LEEGYYRGESGFILDGIPRTRIQAVSLEFCYT--MALAFLFLFLYGCCVIIGSVILNEQV 192 (219)
Q Consensus 135 l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~--pd~VI~L~~~~e~l~~~~~~~~~Rl~ 192 (219)
+.+ .+.-+|++-.--..+..+...+... ..+-||++||.+++ .+|=.
T Consensus 70 l~~----~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~-------~~RD~ 118 (156)
T PF01583_consen 70 LAD----QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVC-------RKRDP 118 (156)
T ss_dssp HHH----TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHH-------HHHTT
T ss_pred HHh----CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHH-------HHhCc
Confidence 222 3456777754222333333333222 46899999999999 88843
No 122
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.46 E-value=6.4e-07 Score=76.11 Aligned_cols=125 Identities=19% Similarity=0.131 Sum_probs=69.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCC---eeccchhHHhhcCCC----------ch-------hHHHHHHHHHcCC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP---HISMGSLVRQELSPR----------SA-------LYKQIANAVNEGK 120 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~---~Is~~dllr~~~~~~----------s~-------lg~~i~~~l~~g~ 120 (219)
.+...|.+.|++||||||+|+.|++.++.. .|+.|+.....-... .| +.+.+. .+.+|+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~-~L~~g~ 84 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLK-DLKQGK 84 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHH-HHHcCC
Confidence 456889999999999999999999999866 677777665322110 01 111221 233343
Q ss_pred cccHHHHHHHHHHHHHhc-cccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791 121 LVPEDVIFALLSKRLEEG-YYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC 197 (219)
Q Consensus 121 ~ip~e~i~~Ll~~~l~~~-~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~ 197 (219)
.+...+..-.-..+..+. .....+-+|++|+---.+ +.+.. ..|+-|++++|.|++ +.|...|.+-
T Consensus 85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~--~~d~kIfvdtd~D~R-------liRri~RD~~ 151 (218)
T COG0572 85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD--LMDLKIFVDTDADVR-------LIRRIKRDVQ 151 (218)
T ss_pred cccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHh--hcCEEEEEeCCccHH-------HHHHHHHHHH
Confidence 322111000000111010 012345688899632211 22222 268999999999999 6666656543
No 123
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.45 E-value=2.8e-06 Score=72.03 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=37.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL 102 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~ 102 (219)
.+.|.|=||.||||||+|+.||++||+.|+++|-++|...
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a 43 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVA 43 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHH
Confidence 3789999999999999999999999999999999998754
No 124
>PTZ00301 uridine kinase; Provisional
Probab=98.44 E-value=3e-07 Score=77.85 Aligned_cols=125 Identities=16% Similarity=0.123 Sum_probs=65.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc----C---CCeeccchhHHhhcCC----------Cch-------hHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL----E---VPHISMGSLVRQELSP----------RSA-------LYKQIANAVNE 118 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l----g---~~~Is~~dllr~~~~~----------~s~-------lg~~i~~~l~~ 118 (219)
-..|.|.|+|||||||+|+.|++++ + +.++++|+..+....- +.| +-+.+ ..+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l-~~L~~ 81 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHL-RELKS 81 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHH-HHHHc
Confidence 3678899999999999999998876 2 3366777765543110 000 00111 11222
Q ss_pred CCcccHHHHHHHHHHHHHhc-cccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791 119 GKLVPEDVIFALLSKRLEEG-YYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC 197 (219)
Q Consensus 119 g~~ip~e~i~~Ll~~~l~~~-~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~ 197 (219)
|+.+.-....-....+.... ......-+|++|+-. .. ...+.. ..|+.|+++++.|++ +.|...|.+.
T Consensus 82 g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~-l~-~~~l~~--l~D~~ifvd~~~d~~-------~~Rr~~Rd~~ 150 (210)
T PTZ00301 82 GKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILL-FT-NAELRN--EMDCLIFVDTPLDIC-------LIRRAKRDMR 150 (210)
T ss_pred CCcccCCCcccccCCcCCceEEeCCCcEEEEechhh-hC-CHHHHH--hCCEEEEEeCChhHH-------HHHHHhhhHH
Confidence 22111000000000000000 001233467799633 11 112222 368899999999999 9999989876
Q ss_pred CC
Q 027791 198 LT 199 (219)
Q Consensus 198 ~~ 199 (219)
..
T Consensus 151 ~r 152 (210)
T PTZ00301 151 ER 152 (210)
T ss_pred hc
Confidence 54
No 125
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.43 E-value=2e-06 Score=76.50 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=34.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL 102 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~ 102 (219)
..|+.|++.|++||||||+|..||++||.+++-..|.+|+.+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~ 131 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVM 131 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHH
Confidence 367899999999999999999999999998543356677444
No 126
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.42 E-value=6.9e-07 Score=73.94 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=29.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHH
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVR 99 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr 99 (219)
|.|.|++||||||+++.|+..+ ++.++++|++..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 7899999999999999999987 467888887664
No 127
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.42 E-value=1.5e-06 Score=78.56 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=29.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHcC------CCeeccchhHH
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLVR 99 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg------~~~Is~~dllr 99 (219)
++|+|+|||||||+++.|++.+. +.+++.||++.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 67999999999999999998775 34999999884
No 128
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.39 E-value=2.6e-06 Score=81.88 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=64.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCC------CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHH--HH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV------PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL--LS 132 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~------~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~L--l~ 132 (219)
.++..|+|+|+|||||||+++.|+++++. .+++.| .+++.+.++....+.-+ +.....+ +.
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er----------~~~~~~l~~~a 458 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDR----------DLNILRIGFVA 458 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHH----------HHHHHHHHHHH
Confidence 45568899999999999999999999985 777664 55665543211111100 0111111 11
Q ss_pred HHHHhccccCCCeEEEeC-ccCCHHHHH---HHHhhCCCcEEEEEEeChhhhcccccchhhhhh
Q 027791 133 KRLEEGYYRGESGFILDG-IPRTRIQAV---SLEFCYTMALAFLFLFLYGCCVIIGSVILNEQV 192 (219)
Q Consensus 133 ~~l~~~~~~~~~g~IlDG-~Pr~~~qa~---~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~ 192 (219)
..+. ..+.++|+|. +|......+ .+... ....+|+|++|.+++ .+|..
T Consensus 459 ~~v~----~~Gg~vI~~~~~p~~~~R~~nr~llk~~-g~fivV~L~~p~e~l-------~~R~r 510 (568)
T PRK05537 459 SEIT----KNGGIAICAPIAPYRATRREVREMIEAY-GGFIEVHVATPLEVC-------EQRDR 510 (568)
T ss_pred HHHH----hCCCEEEEEeCCchHHHHHHHHHHHhhc-CCEEEEEEcCCHHHH-------HHhcc
Confidence 1121 2356788885 554432222 22221 223689999999999 88874
No 129
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.39 E-value=3.3e-07 Score=90.12 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL 102 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~ 102 (219)
+.|.|.|||||||||+++.||+++|+.++++|.++|...
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~ 40 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACA 40 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHH
Confidence 478999999999999999999999999999999998743
No 130
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.36 E-value=8.9e-07 Score=71.85 Aligned_cols=118 Identities=11% Similarity=0.036 Sum_probs=64.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCC---ch----hHHHHHHHHHcCCcccH-----H---HHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR---SA----LYKQIANAVNEGKLVPE-----D---VIF 128 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~---s~----lg~~i~~~l~~g~~ip~-----e---~i~ 128 (219)
..|+|+||+||||||+++.|++.+...++......|+..... .. ....+...+..+..+.. + +..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK 81 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence 568999999999999999999987666655544444332211 00 01223333334432221 0 111
Q ss_pred HHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHh-hCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 129 ALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEF-CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 129 ~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
..+.+.+.+ +..+|+|.-+ .....+.. ...+..++++..+++++ .+|+.+|..
T Consensus 82 ~~i~~~~~~-----g~~vi~d~~~---~~~~~~~~~~~~~~~i~~~~~~~e~~-------~~Rl~~r~~ 135 (180)
T TIGR03263 82 SPVEEALAA-----GKDVLLEIDV---QGARQVKKKFPDAVSIFILPPSLEEL-------ERRLRKRGT 135 (180)
T ss_pred HHHHHHHHC-----CCeEEEECCH---HHHHHHHHhCCCcEEEEEECCCHHHH-------HHHHHHcCC
Confidence 222333332 3568888643 33333333 22333455556667888 899988853
No 131
>PRK07429 phosphoribulokinase; Provisional
Probab=98.35 E-value=1e-06 Score=79.35 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC---CCeeccchhH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLV 98 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg---~~~Is~~dll 98 (219)
.++..|.|.|++||||||+++.|++.++ +.++..|++.
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 5788999999999999999999999987 5678888764
No 132
>PLN02348 phosphoribulokinase
Probab=98.34 E-value=4.2e-07 Score=83.36 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=26.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
..++..|.|.|++||||||+++.|++.++
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35678899999999999999999999986
No 133
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.32 E-value=8.1e-06 Score=67.86 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=59.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHH--
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS-- 132 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~-- 132 (219)
+.++..|.|+|++||||||+++.|+..+ | ..+++.++ ++..+...... .. .-..+.+..+..
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~-~~~~~~~~~~~-------~~---~~~~~~~~~l~~~a 89 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDN-VRHGLCSDLGF-------SD---ADRKENIRRVGEVA 89 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEe-HHhhhhhcCCc-------Cc---ccHHHHHHHHHHHH
Confidence 4577899999999999999999999976 3 45555444 33322111000 00 000122222211
Q ss_pred HHHHhccccCCCeEEEeCccCC-HHHHHHHHhhC-CCc-EEEEEEeChhhhcccccchhhh
Q 027791 133 KRLEEGYYRGESGFILDGIPRT-RIQAVSLEFCY-TMA-LAFLFLFLYGCCVIIGSVILNE 190 (219)
Q Consensus 133 ~~l~~~~~~~~~g~IlDG~Pr~-~~qa~~l~~~~-~pd-~VI~L~~~~e~l~~~~~~~~~R 190 (219)
..+.. ....|+..|... ..+.+.+.... ... .+|+|++|++++ .+|
T Consensus 90 ~~~~~-----~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~-------~~R 138 (198)
T PRK03846 90 KLMVD-----AGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAIC-------EAR 138 (198)
T ss_pred HHHhh-----CCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHH-------Hhc
Confidence 11111 123455556542 34455554433 223 489999999999 888
No 134
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.32 E-value=1.4e-06 Score=71.87 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCC--eeccchhHHhhcCCCchhHHHHHHHHHcCCcc------c--HH---HHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLV------P--ED---VIFAL 130 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~--~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~i------p--~e---~i~~L 130 (219)
..|+|.|++-|||||+++.|.+.+.-| |+++|+++.. +.++.. ..+.-+ + .. .+...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~-~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~ 71 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM-MPPGRY---------RPGDGLEPAGDRPDGGPLFRRLYAA 71 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH-S-GGGG---------TSTTSEEEETTSEEE-HHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh-cCcccc---------cCCccccccccCCchhHHHHHHHHH
Confidence 578999999999999999999999665 6777776664 322110 000000 0 11 12222
Q ss_pred HHHHHHhccccCCCeEEEeCccCCHHH-HHHHHh-h-CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 131 LSKRLEEGYYRGESGFILDGIPRTRIQ-AVSLEF-C-YTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDG~Pr~~~q-a~~l~~-~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
....+... ...+..+|+|........ .+.+.. + ..+.+.|-+.||.+++ .+|-..|.
T Consensus 72 ~~~~iaa~-a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil-------~~RE~~Rg 131 (174)
T PF07931_consen 72 MHAAIAAM-ARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEIL-------ERRERARG 131 (174)
T ss_dssp HHHHHHHH-HHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHH-------HHHHHHHT
T ss_pred HHHHHHHH-HhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHH-------HHHHHhcC
Confidence 22333222 135678999976555443 343422 2 3466899999999999 88887664
No 135
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.28 E-value=8.7e-06 Score=69.01 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+.|+|+|+|||||||+|+.|++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 578999999999999999999987
No 136
>PRK05439 pantothenate kinase; Provisional
Probab=98.28 E-value=3e-06 Score=75.76 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC-------CCeeccchhHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLVR 99 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-------~~~Is~~dllr 99 (219)
..+..|.|.|+|||||||+|+.|++.++ +.+|++|+.+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 5678999999999999999999998663 46788888764
No 137
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.27 E-value=9.1e-07 Score=75.22 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=27.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHcC-------CCeeccchhH
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV 98 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg-------~~~Is~~dll 98 (219)
|.|.|++||||||+++.|+..+. +.+|++|+..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 67899999999999999999873 4567777764
No 138
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.27 E-value=5.1e-06 Score=81.19 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=37.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhh
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~ 101 (219)
+.++|.+.||+||||||+++.||++||++|+++++++|..
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 4678999999999999999999999999999999999886
No 139
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.27 E-value=2.7e-06 Score=72.36 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..|.|.|++||||||+++.|+..+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999877
No 140
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.26 E-value=1e-05 Score=67.07 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I 92 (219)
++..|+|+||+||||||+++.|+..++..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~ 34 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQL 34 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCcccee
Confidence 5678999999999999999999998863333
No 141
>PHA00729 NTP-binding motif containing protein
Probab=98.26 E-value=7.6e-06 Score=70.07 Aligned_cols=112 Identities=10% Similarity=-0.027 Sum_probs=61.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCC--CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~--~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~ 140 (219)
...|+|+|+||+||||+|..|+++++. ..++.++...... . ....++.+-+...++...+..
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~--~------------~~~fid~~~Ll~~L~~a~~~~-- 80 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYV--Q------------NSYFFELPDALEKIQDAIDND-- 80 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcC--C------------cEEEEEHHHHHHHHHHHHhcC--
Confidence 357999999999999999999998752 2222221111110 0 001122222333333333221
Q ss_pred cCCCeEEEeCcc---CC-------HHHHHHHHhhC--CCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791 141 RGESGFILDGIP---RT-------RIQAVSLEFCY--TMALAFLFLFLYGCCVIIGSVILNEQVDGSLC 197 (219)
Q Consensus 141 ~~~~g~IlDG~P---r~-------~~qa~~l~~~~--~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~ 197 (219)
....-+|+|++- .. ....-.+.+.+ ..+++++..++++.+ .+++..|...
T Consensus 81 ~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL-------~~~Lr~Rg~~ 142 (226)
T PHA00729 81 YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDL-------AFYLREKGWY 142 (226)
T ss_pred CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHH-------HHHHHhCCCc
Confidence 112346999821 11 00001122211 478899999999999 9999988754
No 142
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.25 E-value=2e-06 Score=70.80 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=31.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHh
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ 100 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~ 100 (219)
.|.|.|+|||||||+|+.|++.+ ++.+|++|++.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 37899999999999999999986 5678999998864
No 143
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.23 E-value=3.6e-06 Score=70.66 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=24.8
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 59 PPRRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.|.++..|+|+||+||||||+++.|.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3568889999999999999999999864
No 144
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.22 E-value=1.1e-05 Score=78.46 Aligned_cols=111 Identities=11% Similarity=0.002 Sum_probs=65.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRL 135 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l 135 (219)
.++..|+++|.|||||||+|+.|++++ ++.+++.|+ +|..+..+......-+ .+.+..+.. +
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~~~~~~~~r----------~~~~~~l~~--~ 524 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRDLGFSDADR----------VENIRRVAE--V 524 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCCCCCCHHHH----------HHHHHHHHH--H
Confidence 467899999999999999999999997 345666644 6655432211111100 112222211 1
Q ss_pred HhccccCCCeEEEeCccCCHHHHHHHHhhC--CCcEEEEEEeChhhhcccccchhhhh
Q 027791 136 EEGYYRGESGFILDGIPRTRIQAVSLEFCY--TMALAFLFLFLYGCCVIIGSVILNEQ 191 (219)
Q Consensus 136 ~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~--~pd~VI~L~~~~e~l~~~~~~~~~Rl 191 (219)
.......+..+|+|.......+.+.+.+.. .+..+|+|+++.+++ .+|.
T Consensus 525 a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~-------~~R~ 575 (632)
T PRK05506 525 ARLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVC-------EARD 575 (632)
T ss_pred HHHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHH-------HhhC
Confidence 110012345678886432334444444432 234799999999999 8884
No 145
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.22 E-value=1.7e-05 Score=74.28 Aligned_cols=42 Identities=31% Similarity=0.352 Sum_probs=35.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL 102 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~ 102 (219)
.+|..|+|.|+||+||||++..||+++|+.++-..|.+|+.+
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~l 294 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVL 294 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHH
Confidence 368899999999999999999999999998654446676644
No 146
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.16 E-value=8.7e-06 Score=67.53 Aligned_cols=120 Identities=8% Similarity=-0.001 Sum_probs=65.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCc-------hhHHHHHHHHHcCCcccH-----H---
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRS-------ALYKQIANAVNEGKLVPE-----D--- 125 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s-------~lg~~i~~~l~~g~~ip~-----e--- 125 (219)
.++..|+|.||+||||||+++.|.+++.-.+++..-.-|...+... ..-++....+++|..+.- +
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 3678899999999999999999998873223333323333222111 011333444444443221 0
Q ss_pred HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCc--EEEEEEeC-hhhhcccccchhhhhhcCCC
Q 027791 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMA--LAFLFLFL-YGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 126 ~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd--~VI~L~~~-~e~l~~~~~~~~~Rl~~R~~ 196 (219)
+-..-+...+.+ +...|+|-.+.... .+... .|+ .+|++..| .+++ .+|+.+|..
T Consensus 82 t~~~~i~~~~~~-----g~~~i~d~~~~g~~---~l~~~-~~~~~~~Ifi~pps~e~l-------~~RL~~R~~ 139 (186)
T PRK14737 82 TPKAFIEDAFKE-----GRSAIMDIDVQGAK---IIKEK-FPERIVTIFIEPPSEEEW-------EERLIHRGT 139 (186)
T ss_pred CcHHHHHHHHHc-----CCeEEEEcCHHHHH---HHHHh-CCCCeEEEEEECCCHHHH-------HHHHHhcCC
Confidence 111112223332 45678886543333 33332 244 57888885 5888 899988864
No 147
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.14 E-value=2.2e-05 Score=69.60 Aligned_cols=96 Identities=13% Similarity=-0.004 Sum_probs=55.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
.+..|+|+|++||||||+++.|. ..|+..++- +|.+++..++.- ..+....
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~---------------------------~~~~L~~~l~~~-~~~~~~~ 55 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN---------------------------LPPSLLPKLVEL-LAQSGGI 55 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECC---------------------------cCHHHHHHHHHH-HHhcCCC
Confidence 34578999999999999999995 568766522 111222232221 1211001
Q ss_pred CCCeEEEeCccCCH-----HHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791 142 GESGFILDGIPRTR-----IQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVD 193 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~-----~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~ 193 (219)
..--+++|-..... +..+.+........+|+|+++++++ .+|+.+
T Consensus 56 ~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L-------~~Rl~~ 105 (288)
T PRK05416 56 RKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVL-------IRRYSE 105 (288)
T ss_pred CCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHH-------HHHHhh
Confidence 22356777532211 1122233322334789999999999 999974
No 148
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.12 E-value=1.4e-05 Score=70.18 Aligned_cols=110 Identities=21% Similarity=0.100 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~ 138 (219)
+.|+|+|.|||||||+|+.|.+.+ .+.+++.+++. +.... . .. .-.++.+...+...++..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~-y-~~---------~~~Ek~~R~~l~s~v~r~ 67 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRND-Y-AD---------SKKEKEARGSLKSAVERA 67 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSS-S------------GGGHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhh-h-hc---------hhhhHHHHHHHHHHHHHh
Confidence 578999999999999999999974 44556644433 11111 0 00 001122222233333322
Q ss_pred cccCCCeEEEeCccCCHHHH-HHHH---hhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 139 YYRGESGFILDGIPRTRIQA-VSLE---FCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 139 ~~~~~~g~IlDG~Pr~~~qa-~~l~---~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
. ..+.-+|+|+--.-.... +.+. .......+||++++.|.+ .+|=.+|.
T Consensus 68 l-s~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~-------~~~N~~R~ 120 (270)
T PF08433_consen 68 L-SKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETC-------LQRNSKRP 120 (270)
T ss_dssp H-TT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHH-------HHHHHHTT
T ss_pred h-ccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHH-------HHhhhccC
Confidence 1 224678999743332222 2221 223466899999999999 88877775
No 149
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.10 E-value=1.3e-05 Score=66.26 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcC
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
.|.|.|++||||||+|+.|++.++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999996
No 150
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.10 E-value=3.1e-06 Score=69.31 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcC--CCeeccchhHHhh
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVRQE 101 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg--~~~Is~~dllr~~ 101 (219)
++++|+|+|||||||+|..++++++ +.++.++...+++
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e 41 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDE 41 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHH
Confidence 5799999999999999999999987 4466665544443
No 151
>PLN02165 adenylate isopentenyltransferase
Probab=98.10 E-value=2.6e-05 Score=70.37 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchh
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dl 97 (219)
.++..|+|+||+||||||++..||+.++..+|+.|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 4566899999999999999999999999999999876
No 152
>PRK15453 phosphoribulokinase; Provisional
Probab=98.08 E-value=1.8e-05 Score=69.93 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR 99 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dllr 99 (219)
.+++.|.|.|.|||||||+++.|++.++ ..+|+.|+..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4678899999999999999999998773 45677766543
No 153
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.07 E-value=4.3e-06 Score=73.45 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=28.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHc---CCCeeccchhH
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLV 98 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dll 98 (219)
|.|.|++||||||+++.|+..+ +..+|+.|++.
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 6799999999999999999877 56688888764
No 154
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.05 E-value=2.9e-06 Score=75.20 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC-------CCeeccchhH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV 98 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-------~~~Is~~dll 98 (219)
..+..|.|.|++||||||+++.|...+. +.++++|+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 4678899999999999999998877653 4567777654
No 155
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.02 E-value=4.7e-06 Score=63.32 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=26.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
|+|+||||+||||+++.+++.++.+++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i 29 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEI 29 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence 68999999999999999999999877654
No 156
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.96 E-value=9e-05 Score=65.39 Aligned_cols=104 Identities=10% Similarity=-0.036 Sum_probs=63.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
..|+|+|.+||||||..+.| |.+|+..|+- +|..++..+++.-.+.......
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~ 53 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEK 53 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCce
Confidence 36789999999999999998 7788876621 3555566655432211111123
Q ss_pred CeEEEeCccCC----HH-HHHHHHhhCCCcEEEEEEeChhhhcccccchhhhh-hcCCCCCCCCC
Q 027791 144 SGFILDGIPRT----RI-QAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQ-VDGSLCLTCPC 202 (219)
Q Consensus 144 ~g~IlDG~Pr~----~~-qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl-~~R~~~~~~g~ 202 (219)
--+++|--... .. ....+......-.+|+|+++++++ ++|. ..|+.+|-.+.
T Consensus 54 ~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~L-------irRy~eTRR~HPL~~~ 111 (284)
T PF03668_consen 54 VAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVL-------IRRYSETRRRHPLSSD 111 (284)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHH-------HHHHHhccCCCCCCCC
Confidence 34777732111 11 112222222334699999999999 9999 46778886543
No 157
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.96 E-value=4.7e-05 Score=65.99 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.....++|+||||+||||+|+.+++.+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999999875
No 158
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.95 E-value=0.00014 Score=60.14 Aligned_cols=44 Identities=25% Similarity=0.281 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---CCC-eeccchhHHhhcCC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVP-HISMGSLVRQELSP 104 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~-~Is~~dllr~~~~~ 104 (219)
.++..|-|+|.+||||||+|..|.++| |.. ++--||-+|.-+..
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~ 68 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNR 68 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccC
Confidence 566777799999999999999999987 442 22335677776654
No 159
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.83 E-value=1.8e-05 Score=79.32 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=36.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL 102 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~ 102 (219)
+.|.|.|||||||||+++.||++|++.++++|.++|...
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a 73 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT 73 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence 489999999999999999999999999999999999863
No 160
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.80 E-value=8.2e-05 Score=64.72 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=37.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS 103 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~ 103 (219)
.+|..|++-|+||.||||+|..||.++|+.++-..|.+|+-+.
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR 129 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLR 129 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHH
Confidence 5678898999999999999999999999988766677777664
No 161
>CHL00181 cbbX CbbX; Provisional
Probab=97.77 E-value=7.5e-05 Score=66.03 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..++|.||||+||||+|+.+++.+
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 356779999999999999999999875
No 162
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.73 E-value=0.00057 Score=56.91 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS 103 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~ 103 (219)
++..++|.||+|+||||+.+.|-+.. --.+|+.---|...+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~ 43 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRP 43 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCC
Confidence 67889999999999999999999988 445566555565544
No 163
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00015 Score=69.76 Aligned_cols=119 Identities=20% Similarity=0.237 Sum_probs=65.7
Q ss_pred CCCCCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc--hhHHhhcCCCchhHHHHHHHHHcCCcc-----------
Q 027791 56 AGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG--SLVRQELSPRSALYKQIANAVNEGKLV----------- 122 (219)
Q Consensus 56 ~~~~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~--dllr~~~~~~s~lg~~i~~~l~~g~~i----------- 122 (219)
.|..|.++ ++|.||||+|||.+|+.||-++++|++++. +++-.. .+ +.-+.|++.+++-...
T Consensus 218 lGv~PprG--vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv-SG--ESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 218 LGVRPPRG--VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV-SG--ESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred cCCCCCCc--eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc-Cc--ccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 34444444 778999999999999999999999999763 222111 11 1224555544332111
Q ss_pred ---------cHH----HHHHHHHHHHHhcccc--CCCeEEEeCccCCHHHH-HHHHhhCCCcEEEEEEeChhhh
Q 027791 123 ---------PED----VIFALLSKRLEEGYYR--GESGFILDGIPRTRIQA-VSLEFCYTMALAFLFLFLYGCC 180 (219)
Q Consensus 123 ---------p~e----~i~~Ll~~~l~~~~~~--~~~g~IlDG~Pr~~~qa-~~l~~~~~pd~VI~L~~~~e~l 180 (219)
..| ++..|+. -|...... .+.++++=|.-...+-. -.|...+.+|.=|.|.+|+++.
T Consensus 293 AI~pkRe~aqreMErRiVaQLlt-~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~a 365 (802)
T KOG0733|consen 293 AITPKREEAQREMERRIVAQLLT-SMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETA 365 (802)
T ss_pred ccccchhhHHHHHHHHHHHHHHH-hhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHH
Confidence 112 2333322 12221111 13455555542222211 2244456899999999999998
No 164
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00028 Score=65.62 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=52.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc----CC-CeeccchhHHhhcCCCchhHHHHHHHHHcCCc--ccHHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL----EV-PHISMGSLVRQELSPRSALYKQIANAVNEGKL--VPEDVIFALLSKR 134 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l----g~-~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~--ip~e~i~~Ll~~~ 134 (219)
++..++|+||+||||||++..||..+ |. .++...|..|... ..+++.+.+.... .+...... +.+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA------~eQLk~yAe~lgvp~~~~~~~~~-l~~~ 294 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA------IEQLKRYADTMGMPFYPVKDIKK-FKET 294 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH------HHHHHHHHHhcCCCeeehHHHHH-HHHH
Confidence 45678899999999999999999765 22 2233334454421 1233333333221 11122222 2334
Q ss_pred HHhccccCCCeEEEe--Ccc-CCHHHHHHHHh
Q 027791 135 LEEGYYRGESGFILD--GIP-RTRIQAVSLEF 163 (219)
Q Consensus 135 l~~~~~~~~~g~IlD--G~P-r~~~qa~~l~~ 163 (219)
+.. .....+|+| |++ ++..+.+.+..
T Consensus 295 l~~---~~~D~VLIDTaGr~~rd~~~l~eL~~ 323 (432)
T PRK12724 295 LAR---DGSELILIDTAGYSHRNLEQLERMQS 323 (432)
T ss_pred HHh---CCCCEEEEeCCCCCccCHHHHHHHHH
Confidence 432 234669999 764 66777777754
No 165
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.70 E-value=0.00058 Score=58.42 Aligned_cols=112 Identities=17% Similarity=0.140 Sum_probs=59.9
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHhhcCCC---------chhHHHHHHHHHcCCcccH
Q 027791 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPR---------SALYKQIANAVNEGKLVPE 124 (219)
Q Consensus 59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~~~~~~---------s~lg~~i~~~l~~g~~ip~ 124 (219)
....++.|++.|.|+.|||++|+.|+..| ...+++.|+.=|+..... .+-+.++++.+ -.
T Consensus 8 ~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~------a~ 81 (222)
T PF01591_consen 8 FHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQI------AK 81 (222)
T ss_dssp -----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHH------HH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHH------HH
Confidence 34677899999999999999999999866 447888998777665431 12233333322 12
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhC--CCcEEEEEE--eChhhh
Q 027791 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCY--TMALAFLFL--FLYGCC 180 (219)
Q Consensus 125 e~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~--~pd~VI~L~--~~~e~l 180 (219)
+.+.++ ...+++. ++.--|+|+.-.|.+..+.+.+.. ....|++++ |+++.+
T Consensus 82 ~~l~dl-~~~l~~~---~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~i 137 (222)
T PF01591_consen 82 EALEDL-IEWLQEE---GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEI 137 (222)
T ss_dssp HHHHHH-HHHHHTS-----SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHH
T ss_pred HHHHHH-HHHHhcC---CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHH
Confidence 333343 3344432 344569999888877766654321 112455554 666655
No 166
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.65 E-value=0.00026 Score=53.91 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=59.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc--------CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcc--cHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL--------EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV--PEDVIFALLS 132 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l--------g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~i--p~e~i~~Ll~ 132 (219)
.-.++|.|+||+|||++++.+++.+ ..+++.+. +.... ....+.+.+.+.+...... +.+.+.+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN--CPSSR-TPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE--HHHHS-SHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE--eCCCC-CHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 4468899999999999999999987 45544331 11111 1223455555555433222 3344446667
Q ss_pred HHHHhccccCCCeEEEeCccC--CHHHHHHHHhhC-CCcEEEEEEeChh
Q 027791 133 KRLEEGYYRGESGFILDGIPR--TRIQAVSLEFCY-TMALAFLFLFLYG 178 (219)
Q Consensus 133 ~~l~~~~~~~~~g~IlDG~Pr--~~~qa~~l~~~~-~pd~VI~L~~~~e 178 (219)
+.+.+.. ..-+|||.+=. +....+.+.... ...+-|.|-..++
T Consensus 81 ~~l~~~~---~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 81 DALDRRR---VVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTPE 126 (131)
T ss_dssp HHHHHCT---EEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESST
T ss_pred HHHHhcC---CeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEEChh
Confidence 7777642 24688897632 222333333222 4566666666663
No 167
>PLN02840 tRNA dimethylallyltransferase
Probab=97.65 E-value=6.5e-05 Score=69.75 Aligned_cols=38 Identities=29% Similarity=0.249 Sum_probs=33.4
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (219)
Q Consensus 59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d 96 (219)
...+++.|+|.||+||||||++..|+++++.++|+.|.
T Consensus 17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 33556789999999999999999999999999998865
No 168
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.63 E-value=6.3e-05 Score=67.24 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=32.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchh
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dl 97 (219)
.+..|+|+||+||||||+|..|+++++.++||.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 346789999999999999999999999999999873
No 169
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.61 E-value=0.00015 Score=61.76 Aligned_cols=120 Identities=15% Similarity=0.137 Sum_probs=61.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHH-hhcCCC--chhHHHH---------HHHHHcCCcccHHHHHHHHH
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVR-QELSPR--SALYKQI---------ANAVNEGKLVPEDVIFALLS 132 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr-~~~~~~--s~lg~~i---------~~~l~~g~~ip~e~i~~Ll~ 132 (219)
.++|.||+|+|||.++-.||+++|.|+|+.|.+.. .++.-+ .|...++ ...+.+|. ++.+.....+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~Li 81 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERLI 81 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHHH
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHHH
Confidence 57789999999999999999999999999876422 222211 1111111 12344555 45555666667
Q ss_pred HHHHhccccCCCeEEEeCccCCHHHHHHHHh-hC----CCcEEEEEEeChhhhcccccchhhhh
Q 027791 133 KRLEEGYYRGESGFILDGIPRTRIQAVSLEF-CY----TMALAFLFLFLYGCCVIIGSVILNEQ 191 (219)
Q Consensus 133 ~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~-~~----~pd~VI~L~~~~e~l~~~~~~~~~Rl 191 (219)
.++.... .+.++|++|-.-+ -...|.+ .. ..-.+..+.++++.. |-.+..+|+
T Consensus 82 ~~v~~~~--~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~--f~~ra~~Rv 139 (233)
T PF01745_consen 82 SEVNSYS--AHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEV--FMARAKRRV 139 (233)
T ss_dssp HHHHTTT--TSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHH--HHHHHHHHH
T ss_pred HHHHhcc--ccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHH--HHHHHHHHH
Confidence 7777764 3789999986332 2222322 11 223577778877766 434444444
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.59 E-value=6.1e-05 Score=56.15 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
+..++|+||||+||||+++.++..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4578999999999999999999988665
No 171
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.55 E-value=0.00077 Score=55.32 Aligned_cols=115 Identities=12% Similarity=0.087 Sum_probs=59.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCc-h------hHHHHH--HH---HHcC-------CcccHH
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRS-A------LYKQIA--NA---VNEG-------KLVPED 125 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s-~------lg~~i~--~~---l~~g-------~~ip~e 125 (219)
.|.|.+..|||++++++.||++||+++++- +++.+.+.... + ..+... .. +..+ ....++
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 478999999999999999999999999988 77776654310 0 011111 11 1111 112233
Q ss_pred HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 126 ~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
.+.....+-+.+.. ...+.|+.|.- +..+..-.+..+-|+|.+|.+.. ++|+.+|
T Consensus 80 ~~~~~~~~~i~~la--~~~~~Vi~GR~-----a~~il~~~~~~l~V~i~A~~~~R-------v~ri~~~ 134 (179)
T PF13189_consen 80 KIFRAQSEIIRELA--AKGNCVIVGRC-----ANYILRDIPNVLHVFIYAPLEFR-------VERIMER 134 (179)
T ss_dssp HHHHHHHHHHHHHH--H---EEEESTT-----HHHHTTT-TTEEEEEEEE-HHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHh--ccCCEEEEecC-----HhhhhCCCCCeEEEEEECCHHHH-------HHHHHHH
Confidence 44444333333321 13456776651 22221111235889999999999 9998877
No 172
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.55 E-value=4.9e-05 Score=60.90 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=23.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHh
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ 100 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~ 100 (219)
+|+|+|+||+||||+++.|++. |++++ .+..|.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~ 33 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYARE 33 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHH
Confidence 5899999999999999999988 88877 444444
No 173
>PHA03136 thymidine kinase; Provisional
Probab=97.55 E-value=0.0012 Score=60.44 Aligned_cols=24 Identities=33% Similarity=0.180 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
+-.+|.|.|+.|+||||+.+.|.+
T Consensus 35 ~~~rvyieG~~gvGKTT~~~~l~~ 58 (378)
T PHA03136 35 RLVLLYLDGPFGTGKTTTAKLLME 58 (378)
T ss_pred eeEEEEEECCCcCCHHHHHHHHHh
Confidence 457899999999999999999987
No 174
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.54 E-value=5.4e-05 Score=61.76 Aligned_cols=43 Identities=19% Similarity=0.382 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS 103 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~ 103 (219)
..+++|+++|+||+||||+++.+++++.-.-+.++-++-.+..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 3578999999999999999999999884443444444444443
No 175
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.52 E-value=0.00051 Score=60.58 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++..++|+||||+||||+|+.+++.+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34569999999999999998888765
No 176
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.51 E-value=0.00011 Score=68.20 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d 96 (219)
-.|..|+|+||||+|||++++.||+.++.+++.++.
T Consensus 45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 45 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 345679999999999999999999999999998873
No 177
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.51 E-value=0.00062 Score=59.89 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=28.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhHH
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR 99 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dllr 99 (219)
|.|.|.+||||||+++.|.+.++ +.+|+.|+..+
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 67899999999999999998773 45777777665
No 178
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.50 E-value=0.00014 Score=70.12 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc-CCCeeccchh
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSL 97 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l-g~~~Is~~dl 97 (219)
+...|.|.|++||||||+++.|+..+ +..+|++|+.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 56788999999999999999999987 5567888775
No 179
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.50 E-value=0.00011 Score=63.08 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
...++|.||||.||||+|+.||++++..+..+
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~ 81 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKIT 81 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEec
Confidence 35689999999999999999999999876543
No 180
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.49 E-value=9.2e-05 Score=57.51 Aligned_cols=29 Identities=38% Similarity=0.610 Sum_probs=26.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
|+|+|+||+|||++++.+++.++.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i 30 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRI 30 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEE
Confidence 78999999999999999999998877543
No 181
>PF05729 NACHT: NACHT domain
Probab=97.47 E-value=0.00025 Score=55.67 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++|.|+||+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 47899999999999999999876
No 182
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.45 E-value=0.00014 Score=62.20 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCe-eccchhHHhhcC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELS 103 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~-Is~~dllr~~~~ 103 (219)
|.|.++|.|||||||+++.+ ++.|.++ ++++|-++..+.
T Consensus 1 miI~i~G~~gsGKstva~~~-~~~g~~~~~~~~d~ik~~l~ 40 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFI-IENYNAVKYQLADPIKEILA 40 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHH-HhcCCcEEEehhHHHHHHHH
Confidence 57899999999999999998 4567777 999998887653
No 183
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.44 E-value=0.0003 Score=65.47 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d 96 (219)
.+..|+|+||||+||||+|+.|++.++.+++.++-
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 45779999999999999999999999999988764
No 184
>PRK09169 hypothetical protein; Validated
Probab=97.44 E-value=0.00088 Score=71.95 Aligned_cols=107 Identities=13% Similarity=0.038 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
..|+++|.+|+||||+++.|++++++++++.+..+.+. .++.|.+++.... .+.+.-...+.+-+. .
T Consensus 2111 ~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr-~----- 2177 (2316)
T PRK09169 2111 QARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG-LSPEQAAARVRDALR-W----- 2177 (2316)
T ss_pred cccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC-chHHHHHHHHHHHhc-C-----
Confidence 57999999999999999999999999999998887764 4456666655434 566665555555442 1
Q ss_pred CeEEEe--Cc-cCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 144 SGFILD--GI-PRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 144 ~g~IlD--G~-Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
..||. |+ +...+..+.+.. -..+|+++.+.+++ .+|+.+.
T Consensus 2178 -~vVLSTGGGav~~~enr~~L~~---~GlvV~L~an~~tl-------~~Rty~g 2220 (2316)
T PRK09169 2178 -EVVLPAEGFGAAVEQARQALGA---KGLRVMRINNGFAA-------PDTTYAG 2220 (2316)
T ss_pred -CeEEeCCCCcccCHHHHHHHHH---CCEEEEEECCHHHH-------HHHhccC
Confidence 23442 33 233333344444 35799999999999 8998644
No 185
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.44 E-value=0.00034 Score=60.80 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=26.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.++|.|+||+|||++|+.|++.+|.+++.+
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 478999999999999999999999887743
No 186
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.00051 Score=57.95 Aligned_cols=129 Identities=14% Similarity=0.107 Sum_probs=75.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc-CCCeeccchhHHhhcCC----C--------c-----hhHHHHHHHHHcCCccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSP----R--------S-----ALYKQIANAVNEGKLVP 123 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l-g~~~Is~~dllr~~~~~----~--------s-----~lg~~i~~~l~~g~~ip 123 (219)
+...|-|.|...|||||+|+.|...+ |...|+-||.+..+-.- . . ...+.+.-.+.+....|
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 34566778888899999999999888 78899998877654321 0 0 11233333444433333
Q ss_pred HHHHHHHHHH-----HHH--hccccCCCeEEEeCccC--CHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 124 EDVIFALLSK-----RLE--EGYYRGESGFILDGIPR--TRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 124 ~e~i~~Ll~~-----~l~--~~~~~~~~g~IlDG~Pr--~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
+ -...++.- ..+ +.......-+|+|||=- ...+.. ..|..|++..+-+++ ++|-..|
T Consensus 83 ~-ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~------~~d~~im~~~~y~~~-------krRr~~R 148 (225)
T KOG3308|consen 83 E-AREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVD------LFDRIIMLTLDYETC-------KRRREAR 148 (225)
T ss_pred h-HhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhh------hhhhheeeeccHHHH-------HHhhccc
Confidence 2 22222221 111 11112234588999832 111222 357889999999999 9998888
Q ss_pred CCC--CCCCCcc
Q 027791 195 SLC--LTCPCNT 204 (219)
Q Consensus 195 ~~~--~~~g~~~ 204 (219)
-.- ..+|...
T Consensus 149 t~y~p~~tgyfd 160 (225)
T KOG3308|consen 149 TYYPPDDTGYFD 160 (225)
T ss_pred ccCCCCCCcccc
Confidence 643 2444443
No 187
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.40 E-value=0.00015 Score=64.22 Aligned_cols=31 Identities=32% Similarity=0.343 Sum_probs=29.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d 96 (219)
|+|+||+|||||+++..|+++++..+||.|+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 7899999999999999999999999999976
No 188
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00012 Score=65.82 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~I 92 (219)
..|++.||||.|||++|+.||+++.+...
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~ 206 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTN 206 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeec
Confidence 57889999999999999999999977543
No 189
>PLN02748 tRNA dimethylallyltransferase
Probab=97.34 E-value=0.00028 Score=66.44 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=32.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d 96 (219)
.++..|+|+||+|||||+++..||++++..+|+.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 455689999999999999999999999999999974
No 190
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.33 E-value=0.00077 Score=55.16 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=23.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEVPHI 92 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~~~I 92 (219)
++|+|++|||||++|..++...+-+++
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~ 28 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVT 28 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 689999999999999999988664443
No 191
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=97.33 E-value=0.0027 Score=55.52 Aligned_cols=104 Identities=11% Similarity=-0.054 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
..|+|+|.+||||||-.+.| |.+|+..++- +|.+++.+++.-.........+
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~k 53 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITK 53 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCce
Confidence 36889999999999999887 6788876521 3555555555411111100123
Q ss_pred CeEEEeC----ccCCHHH-HHHHHhhCCC-cEEEEEEeChhhhcccccchhhhhh-cCCCCCCCCC
Q 027791 144 SGFILDG----IPRTRIQ-AVSLEFCYTM-ALAFLFLFLYGCCVIIGSVILNEQV-DGSLCLTCPC 202 (219)
Q Consensus 144 ~g~IlDG----~Pr~~~q-a~~l~~~~~p-d~VI~L~~~~e~l~~~~~~~~~Rl~-~R~~~~~~g~ 202 (219)
-.+++|= |+....+ ...+.+.... -.+++|+++++++ +.|.+ .|+.+|-.+.
T Consensus 54 vAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~L-------v~RY~etRR~HPL~~~ 112 (286)
T COG1660 54 VAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETL-------VRRYSETRRSHPLSED 112 (286)
T ss_pred EEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHH-------HHHHhhhhhcCCCCcc
Confidence 4578882 2222222 2222222111 2599999999999 99995 4666765443
No 192
>PRK06761 hypothetical protein; Provisional
Probab=97.28 E-value=0.00027 Score=62.46 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
++.|+|.|+|||||||+++.|++++....++.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence 35799999999999999999999997544443
No 193
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.25 E-value=0.0004 Score=52.32 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc---CCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL---EVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~ 94 (219)
+..++|.|+||+||||+++.++..+ +.+++..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 3458899999999999999999988 6655544
No 194
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.24 E-value=0.00039 Score=61.08 Aligned_cols=28 Identities=29% Similarity=0.237 Sum_probs=25.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
...+.+|.+.|+||+||||+|+.|+..+
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll 106 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALL 106 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHH
Confidence 4677899999999999999999998876
No 195
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0026 Score=61.64 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=33.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHhhc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQEL 102 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~~~ 102 (219)
.+|.-|+++||||+|||++++.||.+-+++++++ .+|+-+..
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v 509 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV 509 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc
Confidence 3566799999999999999999999998888876 34444443
No 196
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.19 E-value=0.0068 Score=48.82 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+++.|+||+||||++..++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998875
No 197
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.19 E-value=0.00042 Score=63.23 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
.+...++|.||||+||||+++.|++.++.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34567889999999999999999999865
No 198
>PRK14974 cell division protein FtsY; Provisional
Probab=97.16 E-value=0.0041 Score=56.36 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..|+|+|+||+||||++..|+..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357889999999999999888888765
No 199
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.16 E-value=0.00041 Score=63.78 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=30.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVR 99 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr 99 (219)
.+..|+|+||||+|||++++.++.+++.+++.+ .+++.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 445689999999999999999999998876644 44443
No 200
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.16 E-value=0.00045 Score=65.48 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+.-|+|.||||+|||.+|+.+|.+++++.+.+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 445689999999999999999999999998765
No 201
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.16 E-value=0.00048 Score=63.20 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCee--ccchhHHhh
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQE 101 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I--s~~dllr~~ 101 (219)
..|..+.|.||||+|||.+|+.+++++|++.| +.++|+.+.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 56677888999999999999999999999766 445555443
No 202
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.14 E-value=0.00038 Score=56.88 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=23.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHc---CCCe
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLL---EVPH 91 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~l---g~~~ 91 (219)
+|+|+|+||+||||+.+.+.+.+ |+++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 58999999999999999999998 5553
No 203
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.13 E-value=0.00042 Score=62.48 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
..|+|.|+||+||||+++.||+++|.+++.+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV 95 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRV 95 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEE
Confidence 3599999999999999999999999988743
No 204
>PRK12377 putative replication protein; Provisional
Probab=97.09 E-value=0.0038 Score=54.24 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc---CC--CeeccchhHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVR 99 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l---g~--~~Is~~dllr 99 (219)
..++|.|+||+|||+++..++..+ |. .++++.+++.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 458899999999999999999877 33 3455555554
No 205
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.08 E-value=0.00058 Score=63.42 Aligned_cols=32 Identities=31% Similarity=0.527 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
...++|+||||+|||++|+.||+.++.+++.+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i 139 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIA 139 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence 45689999999999999999999999888754
No 206
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.08 E-value=0.00072 Score=53.39 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
.+..|+|.|+.|+||||+++.+++.+|+.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 45679999999999999999999999874
No 207
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.04 E-value=0.00071 Score=61.42 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+..++|.||||+|||++++.++.+++.+++.+
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 345699999999999999999999998877654
No 208
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.03 E-value=0.0092 Score=52.39 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..|.|+|++|+||||.+..||..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 456788888999999999999999876
No 209
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0029 Score=62.54 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHhh
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQE 101 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~~ 101 (219)
-|.-++|+||||+|||-+|+++|-+-|+|++++ .+++...
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 343 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 345588999999999999999999999999987 3444433
No 210
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.01 E-value=0.0014 Score=55.23 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=47.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc------CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCc--------------
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL------EVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-------------- 121 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l------g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~-------------- 121 (219)
++-.++|.|+||+|||+++..++... .+.++++++-.++....-..++-.+.++.++|..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~ 97 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSP 97 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccc
Confidence 66778999999999999999876432 4456665443322221111233334444444321
Q ss_pred ccHHHHHHHHHHHHHhccccCCCeEEEeCc
Q 027791 122 VPEDVIFALLSKRLEEGYYRGESGFILDGI 151 (219)
Q Consensus 122 ip~e~i~~Ll~~~l~~~~~~~~~g~IlDG~ 151 (219)
...+.+...+.+.+++. ....+|+|+.
T Consensus 98 ~~~~~l~~~i~~~i~~~---~~~~vVIDsl 124 (226)
T PF06745_consen 98 NDLEELLSKIREAIEEL---KPDRVVIDSL 124 (226)
T ss_dssp CCHHHHHHHHHHHHHHH---TSSEEEEETH
T ss_pred cCHHHHHHHHHHHHHhc---CCCEEEEECH
Confidence 11223334445556553 3478999964
No 211
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.01 E-value=0.00078 Score=62.33 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=29.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I 92 (219)
+....+|+|+|++||||||+++.|++.||...+
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 356678999999999999999999999998765
No 212
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.00 E-value=0.00079 Score=62.26 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.|.-++|.||||+|||++++.+|..++.+++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 456689999999999999999999998887755
No 213
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.00083 Score=60.06 Aligned_cols=35 Identities=29% Similarity=0.209 Sum_probs=32.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d 96 (219)
.+..|+|+||.+||||-++-.||+++|.++||.|.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DS 36 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDS 36 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecch
Confidence 35678999999999999999999999999999976
No 214
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.00 E-value=0.0021 Score=54.94 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=27.9
Q ss_pred CCCCCCCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccch
Q 027791 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGS 96 (219)
Q Consensus 57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~d 96 (219)
|..| ++-.++|.|+||+|||+++..++... | +.++++++
T Consensus 16 GG~~-~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 16 GGIP-ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCCc-CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 4444 67789999999999999998876542 3 44555543
No 215
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.0048 Score=56.95 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~ 95 (219)
.-.+|.||||+||||+|+.||...+..+..+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s 80 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALS 80 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEec
Confidence 34789999999999999999999999877553
No 216
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.99 E-value=0.00076 Score=63.81 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
+.-++|+||||+|||++++.||.+.+++++.+
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 34589999999999999999999999988765
No 217
>PRK04195 replication factor C large subunit; Provisional
Probab=96.98 E-value=0.00086 Score=63.26 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
+..++|.||||+||||+++.|++++++.++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 45688999999999999999999999887755
No 218
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.96 E-value=0.0049 Score=57.75 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+|..|+|+|++|+||||++..||..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 467889999999999999999999876
No 219
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.96 E-value=0.00097 Score=58.56 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~ 91 (219)
+..++|+||||+|||++++.++++++...
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 34588999999999999999999998654
No 220
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.96 E-value=0.00088 Score=62.25 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
...++|+||||+|||++|+.||+.+++++...
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 35799999999999999999999999887643
No 221
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.96 E-value=0.0044 Score=59.09 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
+..++|+||||+|||++++.+++.++.+
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4568999999999999999999998655
No 222
>PRK04328 hypothetical protein; Provisional
Probab=96.95 E-value=0.0022 Score=55.38 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.++|.|+||+|||+++..++..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 6778899999999999999987654
No 223
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.95 E-value=0.0024 Score=60.59 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=24.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcC---CCeeccch
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLE---VPHISMGS 96 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg---~~~Is~~d 96 (219)
.++|+||+||||||....+-..++ ..+++..|
T Consensus 244 lilitGptGSGKTTtL~a~L~~l~~~~~~iiTiED 278 (486)
T TIGR02533 244 IILVTGPTGSGKTTTLYAALSRLNTPERNILTVED 278 (486)
T ss_pred EEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcC
Confidence 588999999999999987666653 34555555
No 224
>PHA02244 ATPase-like protein
Probab=96.93 E-value=0.0009 Score=61.35 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV 98 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dll 98 (219)
.-++|.||||+|||++++.++..++.+++.+.+++
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~ 154 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM 154 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence 34889999999999999999999999999876554
No 225
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0021 Score=58.62 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=36.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHhhcCCCc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQELSPRS 106 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~~~~~~s 106 (219)
+|.-|+++||||+|||-+|+++|.+.+..+|-+ .+|+++.+-.+.
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGa 230 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGA 230 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccch
Confidence 445588999999999999999999998877744 678888775544
No 226
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.88 E-value=0.0011 Score=59.24 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~I 92 (219)
+..++|.||||+||||+++.+++.++..+.
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 446889999999999999999999987654
No 227
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.87 E-value=0.0011 Score=59.58 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~I 92 (219)
..+|+|+|+||+||||+++.|+..++.+++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 468999999999999999999999999875
No 228
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.87 E-value=0.00091 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHcC
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg 88 (219)
|+|+||+||||||+++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 68999999999999999999864
No 229
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.001 Score=58.99 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~I 92 (219)
-.++|+||||-||||+|..+|.++|+..-
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Emgvn~k 81 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANELGVNLK 81 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHhcCCeE
Confidence 46999999999999999999999988543
No 230
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.83 E-value=0.0013 Score=61.52 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+..++|+||||+|||++++.+|.+++.+++.+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V 248 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRV 248 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence 445688999999999999999999998877654
No 231
>PF13173 AAA_14: AAA domain
Probab=96.82 E-value=0.0015 Score=50.45 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcC----CCeeccchh
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLE----VPHISMGSL 97 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg----~~~Is~~dl 97 (219)
..++|.||.|+||||+++.+++.+. +.+++.++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 4578999999999999999998875 677777653
No 232
>PLN02796 D-glycerate 3-kinase
Probab=96.82 E-value=0.0013 Score=59.69 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV 98 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dll 98 (219)
.++.+|.|.|++||||||+++.|...+. .-.|++|++.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4678999999999999999999998874 4567777765
No 233
>PF13245 AAA_19: Part of AAA domain
Probab=96.81 E-value=0.0014 Score=46.62 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=17.1
Q ss_pred eEEEEEcCCCCChH-HHHHHHHHHc
Q 027791 64 VQWVLIGDPGVKKH-VYADNLSKLL 87 (219)
Q Consensus 64 ~~Ivl~G~PGSGKS-T~a~~La~~l 87 (219)
...+|.|||||||| |+.+++++.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34667999999999 5555555544
No 234
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.81 E-value=0.0037 Score=60.29 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=24.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcC---CCeeccchhH
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLV 98 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg---~~~Is~~dll 98 (219)
.|+|+||+||||||....+.+.++ ..+++..|=+
T Consensus 318 lilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpv 354 (564)
T TIGR02538 318 MVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPV 354 (564)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCc
Confidence 578999999999998866666653 3345555443
No 235
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.80 E-value=0.0019 Score=61.06 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=52.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccchhHHhhcCCCchhHHHHHHHHHcCCc----------ccHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKL----------VPED 125 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~----------ip~e 125 (219)
.++-.++|.|+||+||||++..++... | +.+++.++-..+.......+|-.+.++.++|.+ .+++
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~ 340 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED 340 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence 367789999999999999999998855 3 566666544333332222233334444444421 1244
Q ss_pred HHHHHHHHHHHhccccCCCeEEEeCcc
Q 027791 126 VIFALLSKRLEEGYYRGESGFILDGIP 152 (219)
Q Consensus 126 ~i~~Ll~~~l~~~~~~~~~g~IlDG~P 152 (219)
.+..+ .+.+++. ..+-+|||+..
T Consensus 341 ~~~~i-~~~i~~~---~~~~vvIDsi~ 363 (484)
T TIGR02655 341 HLQII-KSEIADF---KPARIAIDSLS 363 (484)
T ss_pred HHHHH-HHHHHHc---CCCEEEEcCHH
Confidence 44444 4455543 34679999753
No 236
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=96.80 E-value=0.0056 Score=60.09 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
....++++|.||+||||+++.|++.++...++.
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~ 246 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQS 246 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCc
Confidence 346889999999999999999999985544433
No 237
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.78 E-value=0.0043 Score=53.17 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
++..++|.|++|+||||+++.++..+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 344688999999999999999999876
No 238
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.78 E-value=0.0012 Score=53.33 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=23.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHc-----CCCeeccch
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL-----EVPHISMGS 96 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~d 96 (219)
++|.|+||+|||+++..++... .+.++++++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 6899999999999999887643 345566543
No 239
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.76 E-value=0.0016 Score=60.18 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~ 95 (219)
...++|.||||+||||+++.|++..+..++.+.
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~ 68 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALS 68 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 346889999999999999999999988776553
No 240
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.73 E-value=0.0018 Score=53.09 Aligned_cols=27 Identities=37% Similarity=0.492 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
...++|+||+|+|||.+++.|++.+.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 356889999999999999999999985
No 241
>CHL00176 ftsH cell division protein; Validated
Probab=96.73 E-value=0.0017 Score=63.41 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+.-++|.||||+|||++++.+|.+.++|++.+
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 345699999999999999999999999988865
No 242
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.73 E-value=0.0012 Score=49.64 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l 87 (219)
|.|.|+||+|||++++.|++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999866
No 243
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.73 E-value=0.0016 Score=54.53 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
|..|+|+||+|+||||.+..||.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4678999999999999999999887
No 244
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.70 E-value=0.0019 Score=61.71 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is 93 (219)
...+|.|||||||||..+.||+++|+.++.
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 477789999999999999999999987663
No 245
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.70 E-value=0.029 Score=52.52 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+|..+++.|++||||||++..||..+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 357789999999999999988888764
No 246
>PRK09087 hypothetical protein; Validated
Probab=96.70 E-value=0.0016 Score=55.55 Aligned_cols=35 Identities=20% Similarity=0.064 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV 98 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dll 98 (219)
..++|.|++|||||++++.+++..+..+++.+++.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~ 79 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIG 79 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcc
Confidence 45789999999999999999999999888886533
No 247
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.69 E-value=0.0045 Score=52.46 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.++|.|+||+|||+++..++..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 6677889999999999999999654
No 248
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.69 E-value=0.0037 Score=53.43 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=20.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.++|.|+||+||||++..++..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~ 47 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG 47 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999998665443
No 249
>PRK10436 hypothetical protein; Provisional
Probab=96.68 E-value=0.0059 Score=57.61 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=25.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHh
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQ 100 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~ 100 (219)
.|+|.||+||||||....+-+.+ +..++++.|=++-
T Consensus 220 liLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 220 LILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred eEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 67899999999999876555554 3345666654443
No 250
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.68 E-value=0.0026 Score=60.06 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=26.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCC---CeeccchhHHhh
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEV---PHISMGSLVRQE 101 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~---~~Is~~dllr~~ 101 (219)
.|+|+||.||||||..-.+-++++- .++++.|=++-.
T Consensus 260 liLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~ 299 (500)
T COG2804 260 LILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQ 299 (500)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeee
Confidence 5779999999999887777776633 355665544333
No 251
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.66 E-value=0.002 Score=63.28 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=32.8
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 53 LDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 53 ~~~~~~~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
++...+........+++||||.||||+|+.+|+.-|+.++.+
T Consensus 316 ~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 316 MELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred cccCccCCCccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 333334444445677899999999999999999999999866
No 252
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.66 E-value=0.0011 Score=57.08 Aligned_cols=21 Identities=38% Similarity=0.639 Sum_probs=18.5
Q ss_pred EEcCCCCChHHHHHHHHHHcC
Q 027791 68 LIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 68 l~G~PGSGKST~a~~La~~lg 88 (219)
|+|||||||||+++.+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999773
No 253
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.66 E-value=0.0019 Score=63.90 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
+.-|+|+||||+|||++++.+|.+++.++++.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 34589999999999999999999999888865
No 254
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0018 Score=63.44 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.++++++|.||||+|||++++.+|+.+|-.++-+
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence 5778999999999999999999999998777644
No 255
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.64 E-value=0.002 Score=48.13 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcC
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
+|+|+|++||||||+.+.|.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999987553
No 256
>PRK10867 signal recognition particle protein; Provisional
Probab=96.64 E-value=0.041 Score=51.55 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+|..|+++|++||||||.+..||..|
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 356788999999999999888888754
No 257
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0019 Score=58.21 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
...-.|+++||.|||||-+|+.||+.+++|+--.
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence 4556899999999999999999999999997633
No 258
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.63 E-value=0.0012 Score=52.02 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is 93 (219)
.+++.|+||.||||+++.+|+.+|..+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 37899999999999999999999886653
No 259
>PRK13695 putative NTPase; Provisional
Probab=96.62 E-value=0.0019 Score=52.27 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
|+|+|+|+||+||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999987765
No 260
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.61 E-value=0.0017 Score=54.18 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchh
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSL 97 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dl 97 (219)
.+..++|+|+||+|||++++.++.... +.+++..++
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 456788999999999999999998652 345555444
No 261
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.61 E-value=0.0017 Score=57.21 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHhhc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQEL 102 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~~~ 102 (219)
-|..|+|.||||+|||..|+.||.+..+|.+.+ .+|+-++.
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 457899999999999999999999999988865 34555443
No 262
>PLN02772 guanylate kinase
Probab=96.61 E-value=0.022 Score=52.65 Aligned_cols=30 Identities=23% Similarity=0.175 Sum_probs=24.8
Q ss_pred CCCCCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 58 ~~~~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
..+.....++|+||+|+||+|+.++|.+.+
T Consensus 130 ~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 130 VRGNAEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 334455678899999999999999998876
No 263
>PRK06620 hypothetical protein; Validated
Probab=96.60 E-value=0.0018 Score=54.89 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is 93 (219)
..++|.||||+|||++++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 347899999999999999999988875554
No 264
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0022 Score=60.44 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~ 95 (219)
.+..++|.||||+|||.+|+.+|..++.++++.+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~ 308 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK 308 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEee
Confidence 3347999999999999999999998888888764
No 265
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0071 Score=57.85 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.-|.-|+++||||.|||-+|+.+|-+-|+|++.+
T Consensus 335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred cCCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 3445689999999999999999999999999976
No 266
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0044 Score=55.60 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCee--ccchhHHhhcCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQELSP 104 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~I--s~~dllr~~~~~ 104 (219)
.-|+++||||.|||.+|+.+|.+-+-.++ |..||+.+.+-.
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGE 209 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 209 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhcc
Confidence 35889999999999999999999876555 457888887643
No 267
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.57 E-value=0.0033 Score=49.29 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=26.5
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.|.+|+.+.|.|+||+||+.+++.||+.+
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999999974
No 268
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.56 E-value=0.003 Score=56.36 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d 96 (219)
+..|+|+||.|||||.+|-.||++ +..+||.|.
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS 36 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDS 36 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccH
Confidence 347899999999999999999999 568999865
No 269
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.56 E-value=0.017 Score=52.14 Aligned_cols=121 Identities=17% Similarity=0.108 Sum_probs=70.8
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHc---CC-CeeccchhHHhhcCCC-------------------c---hhHHHHH
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL---EV-PHISMGSLVRQELSPR-------------------S---ALYKQIA 113 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~l---g~-~~Is~~dllr~~~~~~-------------------s---~lg~~i~ 113 (219)
+.+|..|+|+|..|+||||....||..| |. ..+..+|-+|...-.+ . ..+..++
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 3578999999999999999999999988 55 3456778787754311 1 1122233
Q ss_pred HHHHcCCc-----------ccHHHHHHHHH-HHHHhcc---ccCCCeEEEeCccC--CHHHHHHHHhhCCCcEEEEEEeC
Q 027791 114 NAVNEGKL-----------VPEDVIFALLS-KRLEEGY---YRGESGFILDGIPR--TRIQAVSLEFCYTMALAFLFLFL 176 (219)
Q Consensus 114 ~~l~~g~~-----------ip~e~i~~Ll~-~~l~~~~---~~~~~g~IlDG~Pr--~~~qa~~l~~~~~pd~VI~L~~~ 176 (219)
....++-. -..+++.+|=+ .++-+.. .+.+.-+++|+.-. ...|++.|.+...+|-+|.=++|
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKlD 295 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKLD 295 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEEecc
Confidence 33222211 01123322211 1222111 11223345587643 46899999988888888888887
Q ss_pred hhhh
Q 027791 177 YGCC 180 (219)
Q Consensus 177 ~e~l 180 (219)
-+--
T Consensus 296 gtAK 299 (340)
T COG0552 296 GTAK 299 (340)
T ss_pred cCCC
Confidence 5443
No 270
>PHA03134 thymidine kinase; Provisional
Probab=96.56 E-value=0.053 Score=49.13 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH--cCCCeeccc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL--LEVPHISMG 95 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~--lg~~~Is~~ 95 (219)
.+-.+|.|.|+.|.||||.++.+.+. .+-+++.+.
T Consensus 11 ~~~~rvYlDG~~GvGKTT~~~~l~~~~~~~~~vl~~p 47 (340)
T PHA03134 11 VRIVRIYLDGAYGIGKSTTGRVMASAASGGGPTLYFP 47 (340)
T ss_pred ccEEEEEEeCCCcCCHHHHHHHHHHhccCCCceEEec
Confidence 35578999999999999999998863 243444443
No 271
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.55 E-value=0.0028 Score=53.35 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchh
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSL 97 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dl 97 (219)
..++|+|++|+|||++++.++... .+.+++..++
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 458899999999999999999876 5566666554
No 272
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.04 Score=45.31 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
.+..|.++||+|+||.|+.......+.-
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~ 31 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAG 31 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhcc
Confidence 4678999999999999999998888743
No 273
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.54 E-value=0.0026 Score=59.31 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV 98 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dll 98 (219)
.+|..|.|.|++||||||+++.|...+. +..|++||+.
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 4678999999999999999999987662 5567888865
No 274
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.54 E-value=0.026 Score=52.77 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..|.|+|++||||||.+..||..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999866
No 275
>PRK06526 transposase; Provisional
Probab=96.53 E-value=0.0024 Score=55.57 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---CC--CeeccchhHHh
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQ 100 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~--~~Is~~dllr~ 100 (219)
..+..++|+||||+|||+++..|+.+. |. .++++.+++..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 355679999999999999999998764 33 34455555443
No 276
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0022 Score=58.42 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=36.6
Q ss_pred CCCCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHhhc
Q 027791 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQEL 102 (219)
Q Consensus 57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~~~ 102 (219)
+..-.++.-|+++||||+|||-+|+++|++-|..+|++ +.+..++.
T Consensus 121 g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 121 GKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred cccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 45556777899999999999999999999999988865 44444443
No 277
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.50 E-value=0.012 Score=53.52 Aligned_cols=113 Identities=13% Similarity=0.048 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
..+++.|++|||||++.+.|.+. +..+++..++.+.. ++.+|+.- ....+.+.....|...+.... ..
T Consensus 142 ~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~------~~qpsQ~~Fe~~l~~~l~~~~--~~ 209 (345)
T PRK11784 142 PLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLG------GPQPSQKDFENLLAEALLKLD--PA 209 (345)
T ss_pred ceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCC------CCCcchHHHHHHHHHHHHcCC--CC
Confidence 45779999999999999999754 78899887765542 33443321 123345666677777776543 35
Q ss_pred CeEEEeCccCCHHHH---HHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 144 SGFILDGIPRTRIQA---VSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa---~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
..+++++..+.+... +.|-+...-..+|.+++|.+.. ++|+.+-.
T Consensus 210 ~~i~vE~Es~~IG~~~lP~~l~~~m~~~~~v~i~~~~e~R-------v~~l~~~Y 257 (345)
T PRK11784 210 RPIVVEDESRRIGRVHLPEALYEAMQQAPIVVVEAPLEER-------VERLLEDY 257 (345)
T ss_pred CeEEEEeccccccCccCCHHHHHHHhhCCEEEEECCHHHH-------HHHHHHHh
Confidence 678888765543221 2221111223588999999999 89987654
No 278
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.48 E-value=0.0036 Score=48.77 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCC--eeccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMG 95 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~--~Is~~ 95 (219)
.+..|++.|+-||||||+++.+++.+|+. +-|+.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPT 49 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPT 49 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--S----TT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCC
Confidence 55789999999999999999999999884 44443
No 279
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.003 Score=59.65 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
-+..++|.||||+||||+|+.+++.+++.
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 34558999999999999999999998764
No 280
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.0034 Score=57.16 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
-+.-++|.||||+||||+++.+++.+++.
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 34567999999999999999999999764
No 281
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.47 E-value=0.0029 Score=52.06 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHhh
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQE 101 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~~ 101 (219)
.+..++|+|+||+|||.+|..++.++ .+.++++.+|+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 45679999999999999999998754 45667777777654
No 282
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.45 E-value=0.008 Score=56.85 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=27.5
Q ss_pred CCCCCCCeEEEEEcCCCCChHHHHHHHHHH----c--CCCeeccc
Q 027791 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKL----L--EVPHISMG 95 (219)
Q Consensus 57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~----l--g~~~Is~~ 95 (219)
|..| ++-.++|.|+|||||||+|..++.+ . .+.+|+..
T Consensus 16 GGlp-~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 16 GGLP-IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCC-CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3344 6778999999999999999998442 2 34556554
No 283
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.45 E-value=0.0023 Score=60.02 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~l 87 (219)
-|++-|+||+||||+|+.||+.|
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHH
Confidence 38899999999999999999988
No 284
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.43 E-value=0.0028 Score=50.72 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=18.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
..+..++|+|++|+|||++.+.+.+.+
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345779999999999999999888766
No 285
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.43 E-value=0.0031 Score=62.50 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+..|+|+||||+||||+++.++..++.+++.+
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i 243 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISI 243 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence 345689999999999999999999998877654
No 286
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.43 E-value=0.0025 Score=49.36 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l 87 (219)
++|+|+||+||||++..++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998876
No 287
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.43 E-value=0.0036 Score=51.16 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
+..|+|+||+||||+|++++|.+.+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 34578999999999999999999874
No 288
>PLN03025 replication factor C subunit; Provisional
Probab=96.42 E-value=0.0031 Score=56.24 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
+.++|.||||+||||+++.+++.+..
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 35789999999999999999998743
No 289
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.42 E-value=0.0028 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+|.|+|+.||||||+++.|-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 57999999999999999999763
No 290
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.41 E-value=0.0032 Score=62.81 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
++..++|+||||+|||++++.||+.++.+++.+
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i 378 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRF 378 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEE
Confidence 445789999999999999999999998877643
No 291
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.41 E-value=0.012 Score=48.29 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~I 92 (219)
+.|+|+|+.-||||++|+.++.+.+.+++
T Consensus 1 ~~ilvtGgaRSGKS~~AE~la~~~~~~v~ 29 (175)
T COG2087 1 MMILVTGGARSGKSSFAEALAGESGGQVL 29 (175)
T ss_pred CeEEEecCccCCchHHHHHHHHhhCCceE
Confidence 46899999999999999999998665543
No 292
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.40 E-value=0.0083 Score=50.49 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
++-.++|.|+||+||||++..++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~ 42 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAY 42 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 677899999999999999988764
No 293
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.40 E-value=0.0033 Score=55.56 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcC
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
.++|.||||+||||+++.+++.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 488999999999999999999874
No 294
>PRK06893 DNA replication initiation factor; Validated
Probab=96.38 E-value=0.0033 Score=53.53 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~ 95 (219)
+.++|.||||+|||++++.++.++ .+.++++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 457899999999999999999875 55666653
No 295
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.37 E-value=0.0038 Score=52.20 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
|.+|.|+|++||||||+.+++.+.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998875
No 296
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0027 Score=59.14 Aligned_cols=30 Identities=20% Similarity=0.458 Sum_probs=27.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
=.+|.||||+||||+..++|..+++.+.+.
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 478999999999999999999999988765
No 297
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.36 E-value=0.0035 Score=48.33 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
..+|.++|++||||||+...|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998653
No 298
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.35 E-value=0.0045 Score=54.63 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I 92 (219)
.+..+++.||||+||||+++.+++.++..++
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 3456667899999999999999998866544
No 299
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.34 E-value=0.003 Score=54.04 Aligned_cols=33 Identities=12% Similarity=0.052 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccch
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGS 96 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~d 96 (219)
..++|+||||+|||++++.++.... +.+++.++
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4688999999999999999998654 45666654
No 300
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.023 Score=52.53 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++..|+++||+|+||||.+..||..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 301
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.33 E-value=0.0042 Score=56.75 Aligned_cols=43 Identities=26% Similarity=0.425 Sum_probs=32.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC--CCee--ccchhHHhhcC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHI--SMGSLVRQELS 103 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg--~~~I--s~~dllr~~~~ 103 (219)
-.+.-|++.||||+|||.+|-.+|++|| +|+. +-++++..++.
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~k 109 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVK 109 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeeccc
Confidence 3456789999999999999999999996 4554 44555555543
No 302
>PRK09183 transposase/IS protein; Provisional
Probab=96.31 E-value=0.004 Score=54.22 Aligned_cols=38 Identities=26% Similarity=0.297 Sum_probs=27.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---CC--CeeccchhH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLV 98 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~--~~Is~~dll 98 (219)
.++..++|+||||+|||+++..|+... |. .+++..+++
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 455678899999999999999997653 33 344544444
No 303
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.30 E-value=0.018 Score=47.23 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc--CCCeeccchhHHh
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQ 100 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l--g~~~Is~~dllr~ 100 (219)
+..+++-||.||||||+-..+--.+ ++.+|+.|++.-+
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~ 41 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQ 41 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhh
Confidence 4567888999999999876554443 6678888765543
No 304
>PRK06921 hypothetical protein; Provisional
Probab=96.30 E-value=0.043 Score=48.01 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
...++|.|+||+|||.++..++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4568999999999999999998865
No 305
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.30 E-value=0.004 Score=66.74 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=32.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVR 99 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr 99 (219)
.|.-|+|+||||+|||.+|+.||.+.++|.|++ .+++.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 345689999999999999999999999998754 55664
No 306
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.30 E-value=0.0058 Score=50.68 Aligned_cols=36 Identities=25% Similarity=0.195 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccch
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGS 96 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~d 96 (219)
.++..+.|.|+||||||++|..++... | +.+|++++
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 477889999999999999999998643 3 55666643
No 307
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.30 E-value=0.0047 Score=61.57 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=27.7
Q ss_pred CCCe-EEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791 61 RRGV-QWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (219)
Q Consensus 61 ~~~~-~Ivl~G~PGSGKST~a~~La~~lg~~~Is 93 (219)
.+|. .++|+||||+|||++|+.||+.++.+++.
T Consensus 485 ~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~ 518 (758)
T PRK11034 485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR 518 (758)
T ss_pred CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEE
Confidence 3443 58899999999999999999999877653
No 308
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.29 E-value=0.0039 Score=59.40 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~ 91 (219)
-+..++|+||||+||||+|+.+|+.+++.+
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 356799999999999999999999998854
No 309
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.26 E-value=0.0047 Score=56.67 Aligned_cols=40 Identities=30% Similarity=0.493 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcC--CCeecc--chhHHhh
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISM--GSLVRQE 101 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg--~~~Is~--~dllr~~ 101 (219)
.+..|+|.||||+|||.+|-.+|+++| +|++.+ .+++-.+
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e 92 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSE 92 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTT
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecc
Confidence 356789999999999999999999996 676654 4444433
No 310
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0037 Score=61.41 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=31.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCee--ccch
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGS 96 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I--s~~d 96 (219)
.-++++++|.||||.|||++++.||+.+|-.++ |.|-
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG 473 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGG 473 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccc
Confidence 358899999999999999999999999976655 4443
No 311
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.25 E-value=0.026 Score=50.11 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=33.9
Q ss_pred CCCCCCCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHh
Q 027791 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ 100 (219)
Q Consensus 57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~ 100 (219)
+....+|..|+++|..||||||+.++|-..+ .-.+|+.|--+++
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~ 61 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRN 61 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhc
Confidence 4455788999999999999999999998766 2345666655554
No 312
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.25 E-value=0.0048 Score=53.98 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+..+|-|+||||+||||+...|.+.|
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 56789999999999999999999877
No 313
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.24 E-value=0.0044 Score=51.61 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcC
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
.|+|.||+||||||+...|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999998887764
No 314
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.24 E-value=0.0047 Score=55.28 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVR 99 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr 99 (219)
+-.+..+|.||||+|||+.+..+|..++.+..-..-++.
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 455789999999999999999999999887766555553
No 315
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.23 E-value=0.005 Score=55.69 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..|.|+|+|||||||++..|...+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999987765
No 316
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.23 E-value=0.0038 Score=52.83 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d 96 (219)
..++++|+||+|||++++++..- +|.++..+
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~l--LP~l~~~e 53 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSL--LPPLTEEE 53 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHC--S--CCEEC
T ss_pred CCeEEECCCCCCHHHHHHHHHHh--CCCCchHH
Confidence 56999999999999999999874 44444433
No 317
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.23 E-value=0.015 Score=50.18 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=46.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC----C---CeeccchhHHhhcCCCchhHHHHHHHHHcC-----CcccHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE----V---PHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPEDVIF 128 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg----~---~~Is~~dllr~~~~~~s~lg~~i~~~l~~g-----~~ip~e~i~ 128 (219)
.....|.|.|++|+||||+|..+++... + ..++.+. . .....+.+.+...+... .....+...
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~----~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 91 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSK----N-PSLEQLLEQILRQLGEPDSSISDPKDIEELQ 91 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHTCC-STSSCCSSHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccc----c-ccccccccccccccccccccccccccccccc
Confidence 4567888999999999999999997721 1 1122211 0 01122344455555443 122334455
Q ss_pred HHHHHHHHhccccCCCeEEEeCcc
Q 027791 129 ALLSKRLEEGYYRGESGFILDGIP 152 (219)
Q Consensus 129 ~Ll~~~l~~~~~~~~~g~IlDG~P 152 (219)
..+.+.+... ..-+|+|+.-
T Consensus 92 ~~l~~~L~~~----~~LlVlDdv~ 111 (287)
T PF00931_consen 92 DQLRELLKDK----RCLLVLDDVW 111 (287)
T ss_dssp HHHHHHHCCT----SEEEEEEEE-
T ss_pred ccchhhhccc----cceeeeeeec
Confidence 5556665542 3468999864
No 318
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.048 Score=53.60 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
.+..++|+|++|+||||+++.|++.+++
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4466899999999999999999999987
No 319
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.21 E-value=0.0045 Score=46.38 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHH
Q 027791 65 QWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~ 85 (219)
+|+|+|.||+||||+...|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999985
No 320
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.21 E-value=0.0052 Score=55.19 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..|.|+||+|+||||++..||..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 356788999999999999999999876
No 321
>PRK05973 replicative DNA helicase; Provisional
Probab=96.20 E-value=0.015 Score=50.16 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG 95 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~ 95 (219)
.++-.++|.|+||+|||+++..++... | +.+++..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 367788899999999999999887744 4 3455553
No 322
>PRK08181 transposase; Validated
Probab=96.19 E-value=0.0057 Score=53.76 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccchhHHhh
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQE 101 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~dllr~~ 101 (219)
++..++|+||||+|||.++..++... | +.++++.+++.+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 45569999999999999999998643 4 5667777777653
No 323
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.19 E-value=0.0049 Score=55.17 Aligned_cols=30 Identities=33% Similarity=0.613 Sum_probs=26.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.++|.|+||+|||++++.+|+.++.+++..
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~i 74 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPFVRI 74 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence 488999999999999999999998766643
No 324
>PF13479 AAA_24: AAA domain
Probab=96.18 E-value=0.0038 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=20.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNL 83 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~L 83 (219)
++.+++|.|+||+||||++..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5789999999999999999887
No 325
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.18 E-value=0.0051 Score=48.77 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
+..+|+|+|++||||||+.+.|...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4688999999999999999999764
No 326
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.0057 Score=57.88 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~ 91 (219)
+..++|+||||+||||+|+.+|+.+++..
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~ 68 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCEN 68 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCccc
Confidence 45689999999999999999999998753
No 327
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.0046 Score=58.88 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
-+..|+|+||||+||||+++.+++.+.+
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4466899999999999999999999875
No 328
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.15 E-value=0.0063 Score=60.38 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=30.0
Q ss_pred CCCCe-EEEEEcCCCCChHHHHHHHHHHcCCCee--ccchhH
Q 027791 60 PRRGV-QWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLV 98 (219)
Q Consensus 60 ~~~~~-~Ivl~G~PGSGKST~a~~La~~lg~~~I--s~~dll 98 (219)
+.+|. .++|+||||+|||++|+.||+.++.+++ ++.++.
T Consensus 480 ~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~ 521 (731)
T TIGR02639 480 PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM 521 (731)
T ss_pred CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence 44554 4789999999999999999999977554 454543
No 329
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.14 E-value=0.0073 Score=48.62 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~ 95 (219)
.+.-++|.|++|+||||++..|.++ |...++-|
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD 45 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR-GHRLVADD 45 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence 3567999999999999999988764 67776443
No 330
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.13 E-value=0.006 Score=60.52 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d 96 (219)
...++|.||||+||||+++.+++.++..++.++.
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 3467899999999999999999998877665543
No 331
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.13 E-value=0.0044 Score=52.94 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
..+..++|+|+||+||||+++.|+.
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC
Confidence 4467799999999999999999974
No 332
>PRK04296 thymidine kinase; Provisional
Probab=96.13 E-value=0.0053 Score=50.80 Aligned_cols=25 Identities=8% Similarity=-0.171 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+..++++|+||+||||.+..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999876
No 333
>PHA03135 thymidine kinase; Provisional
Probab=96.12 E-value=0.13 Score=46.81 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
..-++|.|.|+.|+||||+++.+++.
T Consensus 8 ~~~~rIYlDG~~GvGKTT~~~~l~~~ 33 (343)
T PHA03135 8 AQLIRVYLDGPFGIGKTSMLNEMPDH 33 (343)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 46678999999999999999999885
No 334
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.11 E-value=0.0061 Score=61.01 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
++..++|+||||+||||+++.+++.++.+++.+
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i 380 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRM 380 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 456799999999999999999999999887543
No 335
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.09 E-value=0.061 Score=53.70 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
-+..++|+|++|+||||+++.|++.+++.
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 34567899999999999999999999875
No 336
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.09 E-value=0.003 Score=54.66 Aligned_cols=22 Identities=41% Similarity=0.771 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l 87 (219)
-+|+|||||||||.|.-..+-+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHH
Confidence 4689999999999998777655
No 337
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.031 Score=54.22 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHhhc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQEL 102 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~~~ 102 (219)
.-|.-|++.||||+|||.+|+++|-+-++|.+++ .|.++...
T Consensus 181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV 224 (596)
T COG0465 181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 224 (596)
T ss_pred ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc
Confidence 4556688999999999999999999999997755 45555444
No 338
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.015 Score=52.41 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCee--ccchhHHhhc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQEL 102 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I--s~~dllr~~~ 102 (219)
..|..+.+.||||.|||-+|+.++..+|+..+ +.+.++.+.+
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 45567788899999999999999999988766 4455555543
No 339
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.06 E-value=0.0055 Score=59.29 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+...++|.||||+||||+++.|++.+
T Consensus 101 ~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 101 EKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHH
Confidence 356789999999999999999999866
No 340
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.06 E-value=0.0069 Score=55.82 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
-+.-++|.||||+||||+|..+|+.+.+.
T Consensus 37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 37 VGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34568999999999999999999999874
No 341
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0053 Score=59.44 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=32.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHhhc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQEL 102 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~~~ 102 (219)
|--|++.||||||||-+|+.+|.+-|..+|++ .+|+.++.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYV 586 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYV 586 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHh
Confidence 45589999999999999999999998888886 34555543
No 342
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.01 E-value=0.0066 Score=49.88 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+-.++|.|++||||||+.+.|...+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45678999999999999999998765
No 343
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.01 E-value=0.0071 Score=49.82 Aligned_cols=27 Identities=15% Similarity=-0.029 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
++..+.|+|++||||||+.+.|...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 456788999999999999999998774
No 344
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.00 E-value=0.0064 Score=58.10 Aligned_cols=31 Identities=29% Similarity=0.237 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I 92 (219)
+....+|+||+||||||..+.|++++|+.++
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 4456778899999999999999999999876
No 345
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.97 E-value=0.0098 Score=49.67 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~ 95 (219)
.++..+.|.|+|||||||++..++... .+.+|+.+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 367788899999999999999999764 33456554
No 346
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.96 E-value=0.016 Score=55.06 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~ 95 (219)
++-.++|.|+||+|||+++..++... .+.+|++.
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e 310 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE 310 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 56788899999999999999887543 45556554
No 347
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.95 E-value=0.009 Score=42.09 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=25.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHc---CCCeeccch
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL---EVPHISMGS 96 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~d 96 (219)
+++.|.+|+||||++..++..+ |..+.-.+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~d 35 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLIDD 35 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECC
Confidence 6789999999999999999987 666665653
No 348
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.95 E-value=0.0061 Score=46.83 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|++||||||+.+.|+..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 45678999999999999999998654
No 349
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.0067 Score=55.97 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=27.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
-++++||||+|||-+|+.+|.+-|..++++
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 578999999999999999999999877765
No 350
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.93 E-value=0.0075 Score=47.28 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHH
Q 027791 65 QWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~ 85 (219)
+|+|+|+||+||||+..++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999975
No 351
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.93 E-value=0.0078 Score=46.62 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+|+|+|.||+||||+..++...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999863
No 352
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.0082 Score=57.02 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
-+.-++|.||+|+||||+|+.+|+.+++.
T Consensus 34 i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 34 IPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 34569999999999999999999988764
No 353
>PRK13768 GTPase; Provisional
Probab=95.93 E-value=0.0075 Score=52.25 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++.++|.|++|+||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 4678899999999999999998766
No 354
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.93 E-value=0.0085 Score=45.59 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLS 84 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La 84 (219)
.+-.+.|.||+||||||+++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45678999999999999999987
No 355
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.0086 Score=57.59 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
+..++|.||||+||||+|+.||+.+++
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345889999999999999999999876
No 356
>PHA02624 large T antigen; Provisional
Probab=95.92 E-value=0.0093 Score=57.88 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~ 95 (219)
+...|+|.||||+||||++..|.+.+|..++++.
T Consensus 430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVN 463 (647)
T PHA02624 430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVN 463 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEee
Confidence 5568999999999999999999999977778764
No 357
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.92 E-value=0.018 Score=54.66 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
++-.++|.|+||+|||+++..++.
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~ 53 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLV 53 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 577889999999999999998765
No 358
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.91 E-value=0.0087 Score=52.01 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=28.3
Q ss_pred CCCCCCCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccc
Q 027791 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (219)
Q Consensus 57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~ 95 (219)
|..| ++-.++|.|+||+||||+|..++... .+.++++.
T Consensus 31 GGip-~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 31 GGIP-AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCeE-CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 4444 67788999999999999999987643 34555653
No 359
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=95.91 E-value=0.017 Score=47.04 Aligned_cols=43 Identities=30% Similarity=0.345 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc----CCCeeccchhHHhhcC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL----EVPHISMGSLVRQELS 103 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l----g~~~Is~~dllr~~~~ 103 (219)
.++..|-++|.+||||||+|-.|.+.+ ...++--+|-+|.-++
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN 75 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLN 75 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccc
Confidence 456777899999999999999998876 3345555666666554
No 360
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.91 E-value=0.0073 Score=47.07 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+|+++|+|||||||+.+++..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999974
No 361
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.91 E-value=0.0075 Score=47.01 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+|+|+|+||+||||+..++...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999999764
No 362
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=95.90 E-value=0.0071 Score=49.48 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=28.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHcC-CCeeccchh
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLE-VPHISMGSL 97 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg-~~~Is~~dl 97 (219)
++=++.+||||||++..|++-|| .-||.-|++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 34468999999999999999999 999988875
No 363
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.90 E-value=0.0079 Score=58.91 Aligned_cols=31 Identities=23% Similarity=0.503 Sum_probs=28.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~ 95 (219)
-+++.||||+||||+++.++.+++++++..+
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is 217 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 217 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 3899999999999999999999999887653
No 364
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.89 E-value=0.0085 Score=45.34 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+|+++|.+||||||+...+....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999997654
No 365
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.89 E-value=0.0086 Score=52.74 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++..|.|+||+|+||||++..|+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56688899999999999999998865
No 366
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.0086 Score=54.46 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
--|..|+++||.|+|||.+|++||+--|.|+|.+
T Consensus 48 V~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 48 VTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred cCccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 3567899999999999999999999999999865
No 367
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.88 E-value=0.043 Score=49.51 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d 96 (219)
+-..|+++|+.|||||-++-.||++++..+|+.|.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDk 40 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDK 40 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccc
Confidence 45678899999999999999999999999998754
No 368
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.87 E-value=0.022 Score=47.86 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccch
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGS 96 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~d 96 (219)
++-.++|.|+||+|||+++..++... | +-++++.+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 56788899999999999999887643 3 34566543
No 369
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.87 E-value=0.009 Score=49.85 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
..++.|.|+|++||||||+.+.+.+.++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578899999999999999999998754
No 370
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.0095 Score=56.84 Aligned_cols=29 Identities=24% Similarity=0.317 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
-+.-++|.||||+||||+|+.||+.+++.
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34568999999999999999999999875
No 371
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.86 E-value=0.0077 Score=52.19 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=27.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHc---CC--CeeccchhHH
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVR 99 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~l---g~--~~Is~~dllr 99 (219)
-++|.|+||+|||+++..++..+ |. .++++.+++.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 58899999999999999999987 33 3445555543
No 372
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.85 E-value=0.0088 Score=47.35 Aligned_cols=29 Identities=14% Similarity=0.029 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc---CCCee
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHI 92 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l---g~~~I 92 (219)
++|.|+|+.+|||||+++.|...+ |+.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 468899999999999999998876 55444
No 373
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.01 Score=58.27 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~ 91 (219)
.+..++|.||||+||||+|+.+|+.+++.+
T Consensus 36 l~HAyLF~GPpGvGKTTlAriLAK~LnC~~ 65 (702)
T PRK14960 36 LHHAYLFTGTRGVGKTTIARILAKCLNCET 65 (702)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 346789999999999999999999998753
No 374
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.0085 Score=60.50 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
-+..++|+||||+||||+++.|++.+++.
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 34567999999999999999999999875
No 375
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.84 E-value=0.0095 Score=52.80 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..|.|+|+|||||||++..|+..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 356788999999999999999988865
No 376
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.83 E-value=0.01 Score=56.88 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
.+..++|+||||+||||+|+.+++.+++.
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34568999999999999999999999874
No 377
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=95.83 E-value=0.0088 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
+.+|+++|++|+||||+...+...
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999998753
No 378
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.095 Score=44.39 Aligned_cols=30 Identities=3% Similarity=-0.186 Sum_probs=25.0
Q ss_pred CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCC
Q 027791 165 YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCP 201 (219)
Q Consensus 165 ~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g 201 (219)
..+|.+|+|++++|++ .+|+..|...++.|
T Consensus 152 v~~dgiIYLrasPetc-------~~Ri~~R~R~EE~g 181 (244)
T KOG4235|consen 152 VSLDGIIYLRASPETC-------YKRIYLRAREEEKG 181 (244)
T ss_pred cccceEEEeecChHHH-------HHHHHHHhhhhhcC
Confidence 3689999999999999 99999886655443
No 379
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.82 E-value=0.008 Score=45.92 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+|+++|+|||||||+...+..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~ 22 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVD 22 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999864
No 380
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.80 E-value=0.009 Score=49.61 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56688999999999999999998654
No 381
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.80 E-value=0.0094 Score=46.49 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+|+|+|.||+||||+..++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999875
No 382
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.79 E-value=0.0083 Score=46.96 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+|+|+|++|+||||+.++|..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999864
No 383
>PRK10646 ADP-binding protein; Provisional
Probab=95.78 E-value=0.014 Score=47.25 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
.+..|++.|.-|+||||+++.|++.+|+
T Consensus 27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 27 GATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4457899999999999999999999987
No 384
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.78 E-value=0.009 Score=51.96 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc---CC--CeeccchhHHhh
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQE 101 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l---g~--~~Is~~dllr~~ 101 (219)
++..++|+|+||+|||.++..|+.++ |+ .++++.|++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 55679999999999999999998876 33 455667776654
No 385
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.78 E-value=0.0094 Score=49.71 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 56689999999999999999998654
No 386
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.77 E-value=0.0096 Score=48.72 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55679999999999999999998643
No 387
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.76 E-value=0.007 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l 87 (219)
|+|.|+|||||||..+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999885
No 388
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.76 E-value=0.0097 Score=54.69 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.++|+||+|+||||++..|+..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356688899999999999999999764
No 389
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.76 E-value=0.0088 Score=49.70 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+ ++.|+|++||||||+.+.|+-.+
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCCC
Confidence 5 89999999999999999998543
No 390
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.75 E-value=0.01 Score=49.36 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56679999999999999999998654
No 391
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.74 E-value=0.011 Score=53.59 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+..++|.|+||+|||++++.+.+.+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44568899999999999999999876
No 392
>PTZ00202 tuzin; Provisional
Probab=95.74 E-value=0.054 Score=51.22 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~ 91 (219)
.+.+++|+|++|+||||+++.+...++.+.
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~~~q 314 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEGMPA 314 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCCceE
Confidence 345889999999999999999998888553
No 393
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.74 E-value=0.0098 Score=49.60 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998654
No 394
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.72 E-value=0.0088 Score=54.02 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHh
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ 100 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~ 100 (219)
..++|.|++|+|||.++..++.++ .+.++++.+++..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~ 225 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI 225 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence 558999999999999999999976 4456666666554
No 395
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.72 E-value=0.01 Score=46.72 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++|+++|++|+||||+..+|...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999754
No 396
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.71 E-value=0.01 Score=49.35 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56689999999999999999998643
No 397
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.71 E-value=0.008 Score=46.48 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHH
Q 027791 65 QWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~ 85 (219)
+|+|+|++||||||+..++..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999864
No 398
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.71 E-value=0.011 Score=49.14 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998644
No 399
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.71 E-value=0.0099 Score=53.04 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++.+|-|+|+||+||||+...|..+|
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 577899999999999999999999987
No 400
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.71 E-value=0.009 Score=56.15 Aligned_cols=27 Identities=37% Similarity=0.441 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
+..+++.|+||+|||++|+.|+..++.
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 457889999999999999999998753
No 401
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.70 E-value=0.011 Score=47.87 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
+..++++.|.||+||||+...|+++ |+.
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~-Gfa 35 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARA-GFA 35 (183)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHc-Cce
Confidence 4457889999999999999999764 443
No 402
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.69 E-value=0.0097 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=16.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~l 87 (219)
..+|.||||+||||+...+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 57789999999997666665554
No 403
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.69 E-value=0.015 Score=48.79 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=27.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~ 95 (219)
.++..+.|.|+||+|||++|..++... .+.+++.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 467889999999999999999998743 34555554
No 404
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.68 E-value=0.0097 Score=46.84 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHH
Q 027791 65 QWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~ 86 (219)
+|+++|++||||||+..++...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998653
No 405
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.011 Score=49.05 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56678999999999999999998543
No 406
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.67 E-value=0.011 Score=48.83 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|++||||||+.+.|+-.+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56679999999999999999998654
No 407
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.66 E-value=0.012 Score=47.58 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+..+|+|+|++||||||+..++..
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567889999999999999999975
No 408
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.66 E-value=0.011 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La 84 (219)
.++-.++++||+||||||+.+-|-
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 356678999999999999999875
No 409
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=95.66 E-value=0.09 Score=43.20 Aligned_cols=132 Identities=14% Similarity=0.038 Sum_probs=68.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCC--CeeccchhHHhhcCC-CchhHHH-HHH--HHHcCC-ccc---HHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSP-RSALYKQ-IAN--AVNEGK-LVP---EDVIFALL 131 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~--~~Is~~dllr~~~~~-~s~lg~~-i~~--~l~~g~-~ip---~e~i~~Ll 131 (219)
++.+|++-|.|-+|||++|..|.+...- .||-+|.++ +.+++ .-..+.- ..+ ...+|+ +++ ..+....+
T Consensus 22 ~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~-e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~~ 100 (205)
T COG3896 22 EGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFW-EALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELAM 100 (205)
T ss_pred CceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHH-HhCCHHhhccccccccccccccCCceeeEeechhHHHHHH
Confidence 5678889999999999999999887744 556664443 33332 1111000 000 001111 111 11221111
Q ss_pred ---HHHHHhccccCCCeEEEeCccCCHHHH-HHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCc
Q 027791 132 ---SKRLEEGYYRGESGFILDGIPRTRIQA-VSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCN 203 (219)
Q Consensus 132 ---~~~l~~~~~~~~~g~IlDG~Pr~~~qa-~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~ 203 (219)
...|... ...+..+|.|.+--+.... +.+..+ ..+...|-+.||+|+. ++|-..| -.-+-|-|
T Consensus 101 ~~~r~ai~a~-ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~-------~~Re~rr-~dR~pG~~ 168 (205)
T COG3896 101 HSRRRAIRAY-ADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEG-------ARRELRR-GDRHPGWN 168 (205)
T ss_pred HHHHHHHHHH-hccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHH-------HHHHhhc-CCcCcchh
Confidence 2222222 1235568888765443332 222222 2355788899999999 8877654 34444443
No 410
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.65 E-value=0.01 Score=50.09 Aligned_cols=27 Identities=33% Similarity=0.382 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 356789999999999999999998543
No 411
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=95.65 E-value=0.011 Score=46.06 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
+.+|+++|.+|+||||+..+|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 578999999999999999999764
No 412
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.65 E-value=0.011 Score=45.98 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHH
Q 027791 65 QWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~ 85 (219)
+|+++|+||+||||+..++..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999874
No 413
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.64 E-value=0.012 Score=48.91 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998543
No 414
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.64 E-value=0.11 Score=52.48 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
.+.-++|.|++|+||||+++.|++.+++.
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 34558999999999999999999999874
No 415
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.012 Score=49.03 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56679999999999999999998643
No 416
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.63 E-value=0.0092 Score=51.50 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG 95 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~ 95 (219)
++-.++|.|+||||||+++.+++... | +.+|+++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 66778899999999999999988754 3 4455553
No 417
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.011 Score=49.90 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56679999999999999999998643
No 418
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.012 Score=49.89 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+|+.||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356789999999999999999998543
No 419
>PRK08116 hypothetical protein; Validated
Probab=95.62 E-value=0.011 Score=51.83 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc---CC--CeeccchhHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVR 99 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l---g~--~~Is~~dllr 99 (219)
.-++|.|+||+|||.++..++..+ +. .+++..+++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~ 155 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN 155 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 348899999999999999999975 44 3445555554
No 420
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.62 E-value=0.012 Score=49.18 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 366789999999999999999998543
No 421
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.012 Score=47.74 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+|+.||||||+.+.|+-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999854
No 422
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.61 E-value=0.012 Score=49.19 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56689999999999999999998654
No 423
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.61 E-value=0.012 Score=49.15 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55679999999999999999998643
No 424
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.60 E-value=0.013 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcC
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
.++|+|+||+||||+++.+++.+.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 479999999999999999999873
No 425
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=95.60 E-value=0.014 Score=45.57 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
..+|+++|+||+||||+..++...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhC
Confidence 368999999999999999988754
No 426
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.60 E-value=0.012 Score=48.78 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55689999999999999999998643
No 427
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.60 E-value=0.012 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+|+++|.||+||||+.+++...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999753
No 428
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.60 E-value=0.014 Score=47.28 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
..+.|+|++||||||++++|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999987
No 429
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.59 E-value=0.013 Score=47.60 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 55679999999999999999998643
No 430
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.59 E-value=0.014 Score=59.02 Aligned_cols=42 Identities=31% Similarity=0.497 Sum_probs=32.4
Q ss_pred CCCCCe-EEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHh
Q 027791 59 PPRRGV-QWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ 100 (219)
Q Consensus 59 ~~~~~~-~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~ 100 (219)
.|.+|. .++|.||||+|||.+|+.||+.+ .+..+++.++...
T Consensus 591 ~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 591 DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 455666 47899999999999999999988 3456777665544
No 431
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.58 E-value=0.013 Score=49.19 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH----cCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKL----LEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~----lg~~~Is~ 94 (219)
...|-|.||||||||++...+.+. |.+-+|.-
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 378899999999999997776554 56666643
No 432
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.58 E-value=0.012 Score=48.87 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.++-+|.++||+||||||+-+.+|.-
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 45667999999999999999999864
No 433
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.58 E-value=0.014 Score=51.91 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVR 99 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr 99 (219)
...|+|.|++||||||+.+.|...+ +..++.+.|-.+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~E 173 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRE 173 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchh
Confidence 3578899999999999999999876 345566655433
No 434
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.58 E-value=0.012 Score=52.74 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+..++|.||||+|||++++.+.+.+
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999998765
No 435
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.012 Score=49.55 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+|+.||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 436
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.57 E-value=0.013 Score=48.28 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-++.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 55689999999999999999998754
No 437
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.57 E-value=0.016 Score=48.82 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.++..+.|.|+||||||+++..++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46788899999999999999999854
No 438
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.56 E-value=0.012 Score=49.80 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 55679999999999999999998543
No 439
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.56 E-value=0.012 Score=59.13 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=29.3
Q ss_pred CCCCCe-EEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchh
Q 027791 59 PPRRGV-QWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSL 97 (219)
Q Consensus 59 ~~~~~~-~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dl 97 (219)
.+.+|. .++|.||+|+|||++|+.||+.+ .+..++++++
T Consensus 534 ~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~ 578 (821)
T CHL00095 534 NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEY 578 (821)
T ss_pred CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhc
Confidence 345564 47899999999999999999987 2445555554
No 440
>COG4240 Predicted kinase [General function prediction only]
Probab=95.56 E-value=0.014 Score=50.58 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---C---CCeeccchhHHhh
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E---VPHISMGSLVRQE 101 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g---~~~Is~~dllr~~ 101 (219)
.+|.++.|.||-||||||++..|-..+ | ...+|.||++..+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlth 94 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTH 94 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcch
Confidence 568999999999999999998776544 3 4566788876544
No 441
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.56 E-value=0.014 Score=50.70 Aligned_cols=30 Identities=10% Similarity=0.273 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
.++-++.|+|++|+||||+++.+...+...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 477889999999999999999999877543
No 442
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.012 Score=58.37 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=33.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc--hhHHhhc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG--SLVRQEL 102 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~--dllr~~~ 102 (219)
.--|+++||||+|||-+|+++|.++++.++|+. +|+....
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYV 746 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYV 746 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHh
Confidence 445999999999999999999999999998873 4555443
No 443
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.54 E-value=0.012 Score=49.18 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+|+.||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 444
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.013 Score=49.77 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56679999999999999999998654
No 445
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.53 E-value=0.012 Score=49.18 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55679999999999999999998643
No 446
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.53 E-value=0.012 Score=47.32 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l 87 (219)
+.|+|++||||||++.+|.+.+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999875
No 447
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.53 E-value=0.012 Score=48.96 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 56679999999999999999998653
No 448
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.52 E-value=0.015 Score=50.30 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcC---CCeeccch
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGS 96 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg---~~~Is~~d 96 (219)
...|+|.|++||||||+...+.+.+. ..++.+.|
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd 163 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIED 163 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEES
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEecc
Confidence 57899999999999999999998773 34455544
No 449
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.52 E-value=0.012 Score=53.30 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d 96 (219)
.+-+++|+||+||||||+.+.|| |+.-++.|+
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IA---GLe~~~~G~ 59 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIA---GLEEPTSGE 59 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh---CCCCCCCce
Confidence 45578999999999999999998 444444333
No 450
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.52 E-value=0.014 Score=49.12 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 56789999999999999999998765
No 451
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.52 E-value=0.013 Score=49.50 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 55689999999999999999998653
No 452
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=95.51 E-value=0.015 Score=46.37 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
..+|+++|++|+||||+..++..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999864
No 453
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.51 E-value=0.012 Score=51.18 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
...+.+++.||||.||||....||.++
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 345678999999999999999999987
No 454
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.51 E-value=0.014 Score=46.77 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+|+|+|.||+||||+..++...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999753
No 455
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.50 E-value=0.017 Score=51.48 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
.+..++|.||||+||||+++.+++.+...
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 44678999999999999999999998654
No 456
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.50 E-value=0.014 Score=49.86 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+|++||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356779999999999999999998543
No 457
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.50 E-value=0.014 Score=48.86 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56678999999999999999998643
No 458
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.50 E-value=0.015 Score=47.23 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+..+|+++|++||||||+...|..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~ 36 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN 36 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh
Confidence 5778999999999999999999974
No 459
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.50 E-value=0.013 Score=48.17 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.++-.+.|+|++||||||+.+.|+-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999999984
No 460
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.49 E-value=0.014 Score=49.22 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+|++||||||+.+.|+-.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5668999999999999999999864
No 461
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.49 E-value=0.015 Score=46.94 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-++.|+|+.||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356689999999999999999998654
No 462
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.49 E-value=0.014 Score=47.11 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56679999999999999999998643
No 463
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.49 E-value=0.014 Score=49.14 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-++.|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998543
No 464
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.48 E-value=0.014 Score=49.49 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.++-.+.|+|+.||||||+.+.|+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999865
No 465
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.47 E-value=0.014 Score=49.43 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 56789999999999999999998543
No 466
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=95.47 E-value=0.016 Score=45.85 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
..+|+|+|+||+||||+..++...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 468999999999999999999753
No 467
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.015 Score=46.88 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+|++||||||+.+.|+-.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 356789999999999999999998654
No 468
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.46 E-value=0.014 Score=49.71 Aligned_cols=26 Identities=19% Similarity=0.496 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55679999999999999999998654
No 469
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=95.46 E-value=0.014 Score=45.54 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+|+++|++|+||||+..++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999764
No 470
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.46 E-value=0.016 Score=46.93 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 56689999999999999999998654
No 471
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.45 E-value=0.015 Score=48.08 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-++.|.|++||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 366789999999999999999998654
No 472
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.45 E-value=0.014 Score=49.12 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998654
No 473
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.45 E-value=0.015 Score=49.49 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56779999999999999999998543
No 474
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.45 E-value=0.015 Score=47.48 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|++||||||+.+.|+-.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998654
No 475
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.44 E-value=0.014 Score=49.96 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-++.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998754
No 476
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.44 E-value=0.015 Score=48.10 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+|++||||||+.+.|+-.+
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 366789999999999999999998644
No 477
>PTZ00035 Rad51 protein; Provisional
Probab=95.44 E-value=0.063 Score=48.62 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
..+-.+.|+|+|||||||++..++-.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHH
Confidence 36778889999999999999999753
No 478
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.43 E-value=0.015 Score=48.13 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+.||||||+.+.|+-.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 56789999999999999999998543
No 479
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.42 E-value=0.017 Score=52.80 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
.+|..|-|+|++||||||+++.|.+++.-
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~ 31 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSE 31 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 47888999999999999999999988853
No 480
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.42 E-value=0.015 Score=49.68 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 56789999999999999999998654
No 481
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.42 E-value=0.017 Score=51.29 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+...+-|+|+|||||||+.+.+...+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456788899999999999999888775
No 482
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.42 E-value=0.015 Score=49.21 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+|++||||||+.+.|+-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 483
>PHA03133 thymidine kinase; Provisional
Probab=95.42 E-value=0.48 Score=43.40 Aligned_cols=29 Identities=21% Similarity=0.149 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
..-.+|.|.|+.|.||||.++.+.+..+.
T Consensus 38 ~~~~rvYlDG~~GvGKTTt~~~l~~a~~~ 66 (368)
T PHA03133 38 SALLRIYVDGPHGLGKTTTAAALAAALGR 66 (368)
T ss_pred ceEEEEEEeCCCcCCHHHHHHHHHHhhCC
Confidence 35678999999999999999888887753
No 484
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.41 E-value=0.016 Score=47.13 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+|++||||||+.+.|+-.+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998643
No 485
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.41 E-value=0.017 Score=58.46 Aligned_cols=41 Identities=22% Similarity=0.550 Sum_probs=29.8
Q ss_pred CCCCCe-EEEEEcCCCCChHHHHHHHHHHc---C--CCeeccchhHH
Q 027791 59 PPRRGV-QWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVR 99 (219)
Q Consensus 59 ~~~~~~-~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~dllr 99 (219)
.|.+|. .++|+||+|+|||++|+.|++.+ + +..+++.++..
T Consensus 593 ~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 593 DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 344554 57899999999999999999876 2 34456655543
No 486
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.40 E-value=0.015 Score=48.80 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|++||||||+.+.|+-.+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 55679999999999999999998654
No 487
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.40 E-value=0.016 Score=49.81 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.++-.+.|+||+||||||+-..|+-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3566899999999999999999874
No 488
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.39 E-value=0.015 Score=48.94 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 56689999999999999999998654
No 489
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.39 E-value=0.015 Score=50.07 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+|++||||||+.+.|+-.+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 366789999999999999999998754
No 490
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.39 E-value=0.015 Score=49.73 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+|+.||||||+.+.|+-.+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356689999999999999999998643
No 491
>PRK05642 DNA replication initiation factor; Validated
Probab=95.38 E-value=0.016 Score=49.62 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH-----cCCCeeccchhHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKL-----LEVPHISMGSLVR 99 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~-----lg~~~Is~~dllr 99 (219)
..++|.|++|+|||.+++.++.+ ..+.+++.++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 45789999999999999998764 3567778877664
No 492
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.37 E-value=0.017 Score=45.54 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
..+|+|+|++|+||||+..++..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999853
No 493
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.37 E-value=0.017 Score=46.48 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.++-.+.|+|+.||||||+.+.|+-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999854
No 494
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.36 E-value=0.016 Score=48.91 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 56789999999999999999998644
No 495
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.36 E-value=0.016 Score=49.51 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+|++||||||+.+.|+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5678999999999999999999953
No 496
>PRK10908 cell division protein FtsE; Provisional
Probab=95.36 E-value=0.017 Score=48.49 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+|+.||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 366789999999999999999998544
No 497
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.36 E-value=0.016 Score=49.02 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|++||||||+.+.|+-.+
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55678999999999999999998654
No 498
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.35 E-value=0.016 Score=50.00 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+|++||||||+.+.|+-.+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356789999999999999999998654
No 499
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.35 E-value=0.015 Score=57.02 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
-+.-++|+|++|+||||+++.|++.+++.
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 34558999999999999999999999884
No 500
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.35 E-value=0.014 Score=46.43 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l 87 (219)
+.++|++||||||++..++..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6789999999999999999876
Done!