Query 027791
Match_columns 219
No_of_seqs 139 out of 1403
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 02:10:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sr0_A Adenylate kinase; phosp 100.0 4.4E-34 1.5E-38 239.1 11.2 140 64-215 1-147 (206)
2 3gmt_A Adenylate kinase; ssgci 100.0 4.9E-32 1.7E-36 230.5 13.2 146 61-215 6-161 (230)
3 3umf_A Adenylate kinase; rossm 100.0 5.9E-30 2E-34 215.9 15.7 130 61-198 27-157 (217)
4 3tlx_A Adenylate kinase 2; str 100.0 8.7E-28 3E-32 204.3 14.5 146 61-215 27-186 (243)
5 3dl0_A Adenylate kinase; phosp 99.9 3.5E-27 1.2E-31 195.2 12.5 143 64-215 1-157 (216)
6 3fb4_A Adenylate kinase; psych 99.9 9.6E-27 3.3E-31 192.4 12.3 143 64-215 1-157 (216)
7 3be4_A Adenylate kinase; malar 99.9 3.6E-26 1.2E-30 190.4 13.1 137 62-207 4-145 (217)
8 2xb4_A Adenylate kinase; ATP-b 99.9 3E-25 1E-29 185.9 15.3 142 64-215 1-158 (223)
9 1ak2_A Adenylate kinase isoenz 99.9 1.6E-25 5.5E-30 188.3 13.7 140 59-207 12-156 (233)
10 1aky_A Adenylate kinase; ATP:A 99.9 5.1E-25 1.7E-29 183.2 14.2 139 61-207 2-145 (220)
11 1e4v_A Adenylate kinase; trans 99.9 3.6E-25 1.2E-29 183.5 10.7 135 64-207 1-136 (214)
12 1zd8_A GTP:AMP phosphotransfer 99.9 7.6E-24 2.6E-28 177.0 12.8 136 61-206 5-140 (227)
13 1zak_A Adenylate kinase; ATP:A 99.9 5.5E-24 1.9E-28 177.1 11.5 138 62-207 4-142 (222)
14 2cdn_A Adenylate kinase; phosp 99.9 1.4E-21 4.9E-26 159.9 12.1 127 60-195 17-148 (201)
15 1ukz_A Uridylate kinase; trans 99.9 5E-21 1.7E-25 156.5 13.9 129 60-195 12-142 (203)
16 2c95_A Adenylate kinase 1; tra 99.9 8.6E-21 2.9E-25 153.4 13.7 126 62-195 8-134 (196)
17 2bwj_A Adenylate kinase 5; pho 99.8 1.3E-20 4.5E-25 152.7 13.8 127 62-196 11-138 (199)
18 3cm0_A Adenylate kinase; ATP-b 99.8 1.5E-20 5.1E-25 151.3 10.0 120 62-195 3-127 (186)
19 1qf9_A UMP/CMP kinase, protein 99.8 6.3E-20 2.1E-24 147.4 12.9 124 62-195 5-132 (194)
20 1tev_A UMP-CMP kinase; ploop, 99.8 1.2E-19 4.2E-24 145.9 13.0 127 62-195 2-135 (196)
21 2bbw_A Adenylate kinase 4, AK4 99.7 1.7E-17 5.8E-22 140.1 14.5 132 62-203 26-157 (246)
22 3lw7_A Adenylate kinase relate 99.7 3.3E-16 1.1E-20 122.8 9.8 118 64-196 2-124 (179)
23 2pbr_A DTMP kinase, thymidylat 99.6 2.5E-14 8.5E-19 114.8 12.3 114 64-195 1-144 (195)
24 2wwf_A Thymidilate kinase, put 99.5 1.4E-14 4.7E-19 118.3 9.0 124 61-194 8-151 (212)
25 1ly1_A Polynucleotide kinase; 99.5 1.4E-14 4.7E-19 115.0 6.1 117 63-196 2-128 (181)
26 4eaq_A DTMP kinase, thymidylat 99.5 1.6E-13 5.5E-18 115.5 11.1 122 61-195 24-170 (229)
27 3t61_A Gluconokinase; PSI-biol 99.5 6E-13 2E-17 108.5 12.5 116 62-196 17-133 (202)
28 2rhm_A Putative kinase; P-loop 99.5 1.8E-13 6.3E-18 109.8 9.3 120 61-195 3-126 (193)
29 2z0h_A DTMP kinase, thymidylat 99.5 8.6E-13 2.9E-17 106.2 13.1 117 64-194 1-142 (197)
30 1nks_A Adenylate kinase; therm 99.4 1.7E-13 5.6E-18 109.6 7.9 119 64-195 2-140 (194)
31 2pt5_A Shikimate kinase, SK; a 99.4 3.9E-13 1.3E-17 106.0 9.7 110 64-195 1-114 (168)
32 1kht_A Adenylate kinase; phosp 99.4 3.2E-14 1.1E-18 113.9 2.6 114 63-193 3-135 (192)
33 2v54_A DTMP kinase, thymidylat 99.4 1.5E-12 5.2E-17 105.5 10.8 112 62-180 3-135 (204)
34 1ltq_A Polynucleotide kinase; 99.4 1.7E-13 5.9E-18 118.1 5.4 123 63-197 2-129 (301)
35 3vaa_A Shikimate kinase, SK; s 99.4 5.1E-13 1.7E-17 109.1 7.8 109 62-192 24-136 (199)
36 3v9p_A DTMP kinase, thymidylat 99.4 4.2E-12 1.4E-16 107.3 13.2 122 61-195 23-173 (227)
37 2iyv_A Shikimate kinase, SK; t 99.4 1.1E-12 3.6E-17 105.2 8.8 110 64-195 3-115 (184)
38 1nn5_A Similar to deoxythymidy 99.4 7.3E-13 2.5E-17 108.0 8.0 124 61-194 7-150 (215)
39 1zuh_A Shikimate kinase; alpha 99.4 6.4E-13 2.2E-17 105.1 7.3 107 62-194 6-117 (168)
40 1vht_A Dephospho-COA kinase; s 99.4 1.1E-12 3.8E-17 108.1 9.0 122 62-195 3-147 (218)
41 4hlc_A DTMP kinase, thymidylat 99.4 9.6E-12 3.3E-16 103.2 14.3 121 63-196 2-147 (205)
42 1y63_A LMAJ004144AAA protein; 99.4 8.1E-13 2.8E-17 106.7 7.4 111 61-195 8-122 (184)
43 2plr_A DTMP kinase, probable t 99.4 1.6E-12 5.6E-17 105.5 9.1 115 62-195 3-144 (213)
44 1jjv_A Dephospho-COA kinase; P 99.4 4E-12 1.4E-16 103.7 11.2 119 64-195 3-145 (206)
45 4edh_A DTMP kinase, thymidylat 99.4 2.1E-11 7.1E-16 101.8 15.3 121 62-195 5-153 (213)
46 2vli_A Antibiotic resistance p 99.3 9.3E-12 3.2E-16 99.1 11.8 113 62-195 4-126 (183)
47 1e6c_A Shikimate kinase; phosp 99.3 7.6E-12 2.6E-16 98.8 11.1 109 64-194 3-116 (173)
48 3a4m_A L-seryl-tRNA(SEC) kinas 99.3 1.6E-11 5.6E-16 104.6 12.7 110 62-195 3-121 (260)
49 1uf9_A TT1252 protein; P-loop, 99.3 8.7E-12 3E-16 100.7 9.5 122 58-195 3-146 (203)
50 3iij_A Coilin-interacting nucl 99.3 2.6E-12 8.8E-17 102.7 6.1 110 62-196 10-119 (180)
51 2f6r_A COA synthase, bifunctio 99.3 1.1E-11 3.6E-16 107.3 10.1 123 60-195 72-221 (281)
52 4eun_A Thermoresistant glucoki 99.3 3.8E-11 1.3E-15 97.9 12.8 115 61-197 27-148 (200)
53 2if2_A Dephospho-COA kinase; a 99.3 6.3E-12 2.2E-16 102.2 7.6 116 64-194 2-144 (204)
54 3kb2_A SPBC2 prophage-derived 99.3 2.1E-11 7.1E-16 95.8 10.2 98 64-194 2-115 (173)
55 3lv8_A DTMP kinase, thymidylat 99.3 2.1E-11 7.3E-16 103.5 10.9 125 62-195 26-176 (236)
56 1knq_A Gluconate kinase; ALFA/ 99.3 1.3E-10 4.4E-15 92.2 14.7 110 62-195 7-125 (175)
57 3trf_A Shikimate kinase, SK; a 99.3 2.4E-11 8.3E-16 97.1 10.5 108 63-191 5-115 (185)
58 4tmk_A Protein (thymidylate ki 99.3 2.3E-11 8E-16 101.6 10.6 120 62-195 2-154 (213)
59 1via_A Shikimate kinase; struc 99.3 3.1E-12 1.1E-16 102.0 5.0 108 64-195 5-114 (175)
60 1cke_A CK, MSSA, protein (cyti 99.2 1.2E-11 4E-16 102.0 6.6 39 63-101 5-43 (227)
61 3nwj_A ATSK2; P loop, shikimat 99.2 2.8E-11 9.6E-16 103.5 8.5 111 63-193 48-161 (250)
62 2p5t_B PEZT; postsegregational 99.2 3.6E-11 1.2E-15 102.0 8.6 119 61-195 30-158 (253)
63 3hjn_A DTMP kinase, thymidylat 99.2 3.6E-10 1.2E-14 93.0 14.1 117 64-194 1-142 (197)
64 4i1u_A Dephospho-COA kinase; s 99.2 4.1E-11 1.4E-15 100.2 8.3 123 61-195 7-153 (210)
65 2grj_A Dephospho-COA kinase; T 99.1 9.5E-11 3.3E-15 96.3 8.4 116 61-191 10-147 (192)
66 1uj2_A Uridine-cytidine kinase 99.1 2.6E-11 8.9E-16 102.5 5.1 116 61-195 20-172 (252)
67 1kag_A SKI, shikimate kinase I 99.1 2.7E-10 9.2E-15 89.9 9.9 112 63-195 4-118 (173)
68 3ld9_A DTMP kinase, thymidylat 99.1 3E-10 1E-14 95.7 10.4 122 61-191 19-163 (223)
69 2jaq_A Deoxyguanosine kinase; 99.1 1.6E-10 5.6E-15 93.0 8.4 30 64-93 1-30 (205)
70 3zvl_A Bifunctional polynucleo 99.1 2.8E-10 9.5E-15 103.6 10.8 101 60-196 255-359 (416)
71 3tmk_A Thymidylate kinase; pho 99.1 4.4E-10 1.5E-14 94.2 10.5 121 62-194 4-147 (216)
72 3ake_A Cytidylate kinase; CMP 99.1 6.9E-10 2.4E-14 89.8 10.5 37 65-101 4-40 (208)
73 1gvn_B Zeta; postsegregational 99.1 2.3E-10 8E-15 99.2 7.9 111 61-180 31-151 (287)
74 1q3t_A Cytidylate kinase; nucl 99.1 2.3E-10 7.9E-15 95.7 7.2 42 60-101 13-54 (236)
75 1qhx_A CPT, protein (chloramph 99.0 4.5E-09 1.5E-13 83.2 13.7 120 63-195 3-134 (178)
76 2h92_A Cytidylate kinase; ross 99.0 1.5E-10 5.1E-15 95.0 3.5 39 63-101 3-41 (219)
77 2yvu_A Probable adenylyl-sulfa 99.0 3E-09 1E-13 85.2 10.7 110 61-192 11-131 (186)
78 2pez_A Bifunctional 3'-phospho 99.0 3.8E-09 1.3E-13 84.1 11.1 40 61-100 3-46 (179)
79 1m7g_A Adenylylsulfate kinase; 99.0 3.1E-09 1.1E-13 87.2 10.3 107 61-191 23-149 (211)
80 2qt1_A Nicotinamide riboside k 98.9 7.8E-10 2.7E-14 90.2 4.4 120 61-196 19-152 (207)
81 4e22_A Cytidylate kinase; P-lo 98.9 4.9E-09 1.7E-13 88.8 9.3 40 61-100 25-64 (252)
82 2qor_A Guanylate kinase; phosp 98.9 4E-09 1.4E-13 86.1 8.4 121 61-196 10-149 (204)
83 3fdi_A Uncharacterized protein 98.9 7E-09 2.4E-13 85.4 9.9 117 63-194 6-137 (201)
84 1gtv_A TMK, thymidylate kinase 98.8 3.4E-10 1.2E-14 92.1 0.2 123 64-196 1-155 (214)
85 2ze6_A Isopentenyl transferase 98.8 1.2E-08 4.1E-13 86.6 9.0 120 64-195 2-139 (253)
86 3hdt_A Putative kinase; struct 98.8 1.3E-08 4.4E-13 85.5 8.6 41 62-103 13-53 (223)
87 3uie_A Adenylyl-sulfate kinase 98.8 4.8E-08 1.7E-12 79.3 11.6 110 61-191 23-140 (200)
88 1x6v_B Bifunctional 3'-phospho 98.8 6.7E-08 2.3E-12 92.4 13.0 113 61-193 50-171 (630)
89 1p5z_B DCK, deoxycytidine kina 98.7 1.6E-09 5.6E-14 91.8 1.4 33 61-93 22-55 (263)
90 2axn_A 6-phosphofructo-2-kinas 98.7 4.7E-09 1.6E-13 98.3 3.6 120 61-195 33-169 (520)
91 3r20_A Cytidylate kinase; stru 98.7 1.2E-07 4.1E-12 80.2 10.3 42 61-102 7-48 (233)
92 1p6x_A Thymidine kinase; P-loo 98.6 3.2E-08 1.1E-12 88.0 4.6 30 60-89 4-33 (334)
93 2gks_A Bifunctional SAT/APS ki 98.6 4.5E-07 1.5E-11 85.3 12.7 112 62-193 371-489 (546)
94 2bdt_A BH3686; alpha-beta prot 98.5 4.1E-07 1.4E-11 72.7 9.2 116 64-197 3-125 (189)
95 2j41_A Guanylate kinase; GMP, 98.5 3.3E-08 1.1E-12 79.7 2.4 26 62-87 5-30 (207)
96 3ch4_B Pmkase, phosphomevalona 98.5 1E-06 3.5E-11 73.0 10.8 119 62-191 10-144 (202)
97 1zp6_A Hypothetical protein AT 98.4 7.9E-07 2.7E-11 70.8 9.2 118 62-195 8-127 (191)
98 1rz3_A Hypothetical protein rb 98.4 4.4E-07 1.5E-11 73.8 7.2 118 61-195 20-165 (201)
99 2ocp_A DGK, deoxyguanosine kin 98.4 7.1E-07 2.4E-11 74.4 7.9 28 62-89 1-29 (241)
100 2vp4_A Deoxynucleoside kinase; 98.4 4.6E-07 1.6E-11 75.3 6.6 31 60-91 17-47 (230)
101 3tau_A Guanylate kinase, GMP k 98.4 2.1E-06 7.2E-11 70.2 10.4 120 61-195 6-142 (208)
102 1m8p_A Sulfate adenylyltransfe 98.4 2.5E-06 8.7E-11 80.7 12.0 113 61-193 394-515 (573)
103 1osn_A Thymidine kinase, VZV-T 98.3 1.2E-06 4E-11 78.1 8.6 30 61-90 10-40 (341)
104 3tr0_A Guanylate kinase, GMP k 98.3 5E-07 1.7E-11 72.7 4.3 27 62-88 6-32 (205)
105 3a8t_A Adenylate isopentenyltr 98.2 1.7E-06 5.9E-11 77.0 6.4 37 61-97 38-74 (339)
106 1bif_A 6-phosphofructo-2-kinas 98.2 6.8E-06 2.3E-10 75.5 10.2 33 61-93 37-69 (469)
107 3asz_A Uridine kinase; cytidin 98.2 4E-06 1.4E-10 67.9 7.6 39 61-99 4-44 (211)
108 1e2k_A Thymidine kinase; trans 98.1 1E-05 3.5E-10 71.7 9.9 28 61-88 2-29 (331)
109 1of1_A Thymidine kinase; trans 98.1 1.9E-05 6.5E-10 71.1 11.6 28 61-88 47-74 (376)
110 3c8u_A Fructokinase; YP_612366 98.1 2.9E-06 1E-10 69.2 5.4 36 61-96 20-60 (208)
111 2jeo_A Uridine-cytidine kinase 98.0 2.5E-05 8.7E-10 65.2 10.0 30 61-90 23-52 (245)
112 3tqc_A Pantothenate kinase; bi 98.0 8.9E-06 3.1E-10 71.7 6.9 38 61-98 90-134 (321)
113 3crm_A TRNA delta(2)-isopenten 97.9 5.1E-06 1.7E-10 73.5 4.0 35 63-97 5-39 (323)
114 1ex7_A Guanylate kinase; subst 97.9 3.6E-05 1.2E-09 62.7 8.1 116 66-196 4-137 (186)
115 1a7j_A Phosphoribulokinase; tr 97.9 3.1E-06 1.1E-10 73.3 1.4 38 62-99 4-46 (290)
116 3a00_A Guanylate kinase, GMP k 97.8 0.00014 4.8E-09 58.0 9.6 24 64-87 2-25 (186)
117 3t15_A Ribulose bisphosphate c 97.8 2.3E-05 7.8E-10 67.6 5.0 34 61-94 34-67 (293)
118 1dek_A Deoxynucleoside monopho 97.7 1.8E-05 6.1E-10 67.1 4.0 39 64-102 2-40 (241)
119 3d3q_A TRNA delta(2)-isopenten 97.7 1.6E-05 5.6E-10 70.7 3.5 34 64-97 8-41 (340)
120 3cr8_A Sulfate adenylyltranfer 97.7 8.2E-05 2.8E-09 70.1 7.8 36 62-97 368-409 (552)
121 3foz_A TRNA delta(2)-isopenten 97.6 3.2E-05 1.1E-09 68.1 4.2 35 62-96 9-43 (316)
122 3exa_A TRNA delta(2)-isopenten 97.6 3.4E-05 1.2E-09 68.1 3.8 35 63-97 3-37 (322)
123 3czq_A Putative polyphosphate 97.6 8.9E-05 3E-09 64.9 6.4 106 61-198 84-215 (304)
124 3syl_A Protein CBBX; photosynt 97.5 7.7E-05 2.6E-09 63.5 5.2 27 61-87 65-91 (309)
125 2qz4_A Paraplegin; AAA+, SPG7, 97.5 7.4E-05 2.5E-09 61.9 4.7 32 63-94 39-70 (262)
126 4b4t_M 26S protease regulatory 97.5 5.5E-05 1.9E-09 69.3 4.2 33 62-94 214-246 (434)
127 1lv7_A FTSH; alpha/beta domain 97.5 8.3E-05 2.8E-09 62.0 4.8 30 65-94 47-76 (257)
128 4b4t_L 26S protease subunit RP 97.5 6.5E-05 2.2E-09 68.9 4.2 33 62-94 214-246 (437)
129 4b4t_K 26S protease regulatory 97.5 6.9E-05 2.4E-09 68.5 4.2 32 63-94 206-237 (428)
130 2ga8_A Hypothetical 39.9 kDa p 97.5 5.6E-05 1.9E-09 67.7 3.3 30 62-91 23-52 (359)
131 4b4t_J 26S protease regulatory 97.5 6.6E-05 2.3E-09 68.2 3.7 32 63-94 182-213 (405)
132 3hws_A ATP-dependent CLP prote 97.4 0.00011 3.6E-09 64.8 4.9 32 63-94 51-82 (363)
133 1kgd_A CASK, peripheral plasma 97.4 9.5E-05 3.2E-09 58.8 4.0 28 61-88 3-30 (180)
134 4gp7_A Metallophosphoesterase; 97.4 0.001 3.6E-08 52.3 9.9 32 62-95 8-39 (171)
135 3b9p_A CG5977-PA, isoform A; A 97.4 0.0001 3.5E-09 62.6 4.2 33 62-94 53-85 (297)
136 3h4m_A Proteasome-activating n 97.4 0.00011 3.7E-09 62.0 4.1 32 63-94 51-82 (285)
137 3cf0_A Transitional endoplasmi 97.4 0.00011 3.7E-09 63.3 4.1 32 63-94 49-80 (301)
138 1d2n_A N-ethylmaleimide-sensit 97.4 0.00014 4.7E-09 61.3 4.5 34 61-94 62-95 (272)
139 3ec2_A DNA replication protein 97.4 0.00015 5E-09 57.3 4.3 37 63-99 38-80 (180)
140 3eie_A Vacuolar protein sortin 97.4 0.00015 5.1E-09 62.9 4.7 33 62-94 50-82 (322)
141 3eph_A TRNA isopentenyltransfe 97.3 0.0001 3.5E-09 67.0 3.6 33 64-96 3-35 (409)
142 4b4t_H 26S protease regulatory 97.3 0.00011 3.7E-09 67.9 3.8 33 62-94 242-274 (467)
143 4b4t_I 26S protease regulatory 97.3 0.00013 4.4E-09 66.8 4.1 33 62-94 215-247 (437)
144 1g41_A Heat shock protein HSLU 97.3 0.00016 5.4E-09 66.4 4.7 34 62-95 49-82 (444)
145 1ofh_A ATP-dependent HSL prote 97.3 0.00015 5.1E-09 61.4 4.3 32 63-94 50-81 (310)
146 1um8_A ATP-dependent CLP prote 97.3 0.00017 5.9E-09 63.7 4.5 33 63-95 72-104 (376)
147 1sq5_A Pantothenate kinase; P- 97.3 0.00017 5.9E-09 62.5 4.4 38 61-98 78-122 (308)
148 1g8f_A Sulfate adenylyltransfe 97.3 0.00013 4.5E-09 68.1 3.9 28 62-89 394-421 (511)
149 2x8a_A Nuclear valosin-contain 97.3 0.00018 6.3E-09 61.4 4.4 29 66-94 47-75 (274)
150 1jbk_A CLPB protein; beta barr 97.2 0.00024 8.1E-09 54.9 4.2 25 63-87 43-67 (195)
151 2r62_A Cell division protease 97.2 0.00011 3.7E-09 61.5 2.0 29 66-94 47-75 (268)
152 2p65_A Hypothetical protein PF 97.2 0.00021 7E-09 55.4 3.3 25 63-87 43-67 (187)
153 3czp_A Putative polyphosphate 97.2 0.00073 2.5E-08 62.9 7.5 107 61-199 41-173 (500)
154 1ixz_A ATP-dependent metallopr 97.2 0.00028 9.5E-09 58.7 4.2 29 66-94 52-80 (254)
155 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.00027 9.1E-09 61.7 4.1 37 62-98 44-83 (322)
156 2qp9_X Vacuolar protein sortin 97.1 0.00024 8.4E-09 62.7 3.7 32 63-94 84-115 (355)
157 1odf_A YGR205W, hypothetical 3 97.1 0.0003 1E-08 60.8 4.2 39 61-99 29-75 (290)
158 2c9o_A RUVB-like 1; hexameric 97.1 0.00034 1.2E-08 63.8 4.5 32 63-94 63-96 (456)
159 3bos_A Putative DNA replicatio 97.1 0.00025 8.6E-09 57.3 3.3 37 62-98 51-92 (242)
160 3pfi_A Holliday junction ATP-d 97.1 0.00037 1.3E-08 60.2 4.4 32 64-95 56-87 (338)
161 2qmh_A HPR kinase/phosphorylas 97.1 0.00028 9.5E-09 58.4 3.3 35 61-96 32-66 (205)
162 3d8b_A Fidgetin-like protein 1 97.1 0.00036 1.2E-08 61.6 4.1 33 62-94 116-148 (357)
163 1ye8_A Protein THEP1, hypothet 97.1 0.00031 1.1E-08 56.3 3.4 27 64-90 1-27 (178)
164 1in4_A RUVB, holliday junction 97.0 0.00043 1.5E-08 60.4 4.3 29 64-92 52-80 (334)
165 3vfd_A Spastin; ATPase, microt 97.0 0.00045 1.5E-08 61.4 4.2 33 62-94 147-179 (389)
166 1iy2_A ATP-dependent metallopr 97.0 0.00047 1.6E-08 58.3 4.2 29 66-94 76-104 (278)
167 3n70_A Transport activator; si 97.0 0.00045 1.5E-08 52.9 3.6 28 65-92 26-56 (145)
168 2w58_A DNAI, primosome compone 97.0 0.00068 2.3E-08 54.2 4.8 24 64-87 55-78 (202)
169 3ney_A 55 kDa erythrocyte memb 97.0 0.00064 2.2E-08 55.8 4.3 28 61-88 17-44 (197)
170 2ce7_A Cell division protein F 96.9 0.00065 2.2E-08 62.8 4.6 30 65-94 51-80 (476)
171 1sxj_A Activator 1 95 kDa subu 96.9 0.00062 2.1E-08 63.0 4.4 33 62-94 76-108 (516)
172 3czp_A Putative polyphosphate 96.9 0.00084 2.9E-08 62.5 5.2 106 61-198 298-429 (500)
173 3cf2_A TER ATPase, transitiona 96.9 0.00044 1.5E-08 67.8 3.5 33 62-94 237-269 (806)
174 1lvg_A Guanylate kinase, GMP k 96.9 0.00056 1.9E-08 55.3 3.1 27 62-88 3-29 (198)
175 2zan_A Vacuolar protein sortin 96.8 0.00071 2.4E-08 61.6 4.1 38 62-99 166-206 (444)
176 4fcw_A Chaperone protein CLPB; 96.8 0.0008 2.7E-08 57.1 4.0 24 64-87 48-71 (311)
177 2kjq_A DNAA-related protein; s 96.8 0.00045 1.5E-08 53.7 2.1 26 62-87 35-60 (149)
178 1l8q_A Chromosomal replication 96.8 0.00083 2.8E-08 57.9 4.0 31 63-93 37-70 (324)
179 1njg_A DNA polymerase III subu 96.8 0.001 3.4E-08 53.0 4.0 26 64-89 46-71 (250)
180 1hqc_A RUVB; extended AAA-ATPa 96.8 0.00078 2.7E-08 57.5 3.6 30 64-93 39-68 (324)
181 3lnc_A Guanylate kinase, GMP k 96.8 0.00053 1.8E-08 56.3 2.3 26 62-87 26-52 (231)
182 3uk6_A RUVB-like 2; hexameric 96.8 0.001 3.5E-08 57.9 4.2 31 63-93 70-102 (368)
183 1svm_A Large T antigen; AAA+ f 96.8 0.00095 3.3E-08 59.9 4.1 33 61-93 167-199 (377)
184 2r44_A Uncharacterized protein 96.7 0.00068 2.3E-08 58.5 2.9 29 65-93 48-76 (331)
185 1tue_A Replication protein E1; 96.7 0.00082 2.8E-08 55.9 3.1 32 63-94 58-89 (212)
186 2chg_A Replication factor C sm 96.7 0.00094 3.2E-08 52.7 3.3 22 66-87 41-62 (226)
187 3pvs_A Replication-associated 96.7 0.0012 4.2E-08 60.3 4.2 32 64-95 51-82 (447)
188 2qby_B CDC6 homolog 3, cell di 96.7 0.0013 4.4E-08 57.3 4.2 34 62-95 44-88 (384)
189 1c9k_A COBU, adenosylcobinamid 96.6 0.00085 2.9E-08 54.4 2.7 25 66-91 2-26 (180)
190 3hu3_A Transitional endoplasmi 96.6 0.0012 4.2E-08 61.1 4.1 33 62-94 237-269 (489)
191 2v1u_A Cell division control p 96.6 0.0009 3.1E-08 58.0 3.0 26 62-87 43-68 (387)
192 3co5_A Putative two-component 96.6 0.00038 1.3E-08 53.3 0.6 27 66-93 30-56 (143)
193 2dhr_A FTSH; AAA+ protein, hex 96.6 0.0012 4.2E-08 61.3 4.1 29 66-94 67-95 (499)
194 3u61_B DNA polymerase accessor 96.6 0.0011 3.9E-08 56.8 3.4 33 63-95 48-80 (324)
195 2a5j_A RAS-related protein RAB 96.6 0.0019 6.3E-08 50.8 4.4 30 57-86 15-44 (191)
196 3pxg_A Negative regulator of g 96.6 0.0016 5.6E-08 59.6 4.6 26 62-87 200-225 (468)
197 1znw_A Guanylate kinase, GMP k 96.6 0.0015 5.1E-08 52.8 3.8 28 61-88 18-45 (207)
198 2qby_A CDC6 homolog 1, cell di 96.6 0.0014 4.7E-08 56.7 3.7 33 62-94 44-82 (386)
199 3m6a_A ATP-dependent protease 96.6 0.0014 4.6E-08 61.4 3.9 33 62-94 107-139 (543)
200 1z6g_A Guanylate kinase; struc 96.6 0.0013 4.6E-08 53.9 3.4 26 62-87 22-47 (218)
201 2h17_A ADP-ribosylation factor 96.5 0.0012 4.2E-08 51.4 3.0 28 58-85 16-43 (181)
202 2oil_A CATX-8, RAS-related pro 96.5 0.0016 5.5E-08 51.1 3.7 28 59-86 21-48 (193)
203 1s96_A Guanylate kinase, GMP k 96.5 0.0017 5.8E-08 53.7 3.9 28 61-88 14-41 (219)
204 3cf2_A TER ATPase, transitiona 96.5 0.0011 3.6E-08 65.1 2.9 40 62-101 510-551 (806)
205 1oix_A RAS-related protein RAB 96.5 0.0018 6.2E-08 51.3 3.7 27 61-87 27-53 (191)
206 3aez_A Pantothenate kinase; tr 96.5 0.002 6.7E-08 56.2 4.2 27 61-87 88-114 (312)
207 3te6_A Regulatory protein SIR3 96.5 0.0011 3.8E-08 58.2 2.4 27 61-87 43-69 (318)
208 2ehv_A Hypothetical protein PH 96.4 0.0019 6.4E-08 52.8 3.5 23 62-84 29-51 (251)
209 2wjg_A FEOB, ferrous iron tran 96.4 0.0026 8.7E-08 49.5 4.1 25 61-85 5-29 (188)
210 2bjv_A PSP operon transcriptio 96.4 0.0021 7.3E-08 53.6 3.8 24 65-88 31-54 (265)
211 3ihw_A Centg3; RAS, centaurin, 96.4 0.0026 8.9E-08 50.1 4.1 27 60-86 17-43 (184)
212 1ypw_A Transitional endoplasmi 96.4 0.0017 5.8E-08 63.5 3.6 34 62-95 237-270 (806)
213 4a74_A DNA repair and recombin 96.4 0.0021 7.2E-08 51.8 3.6 27 61-87 23-49 (231)
214 1xjc_A MOBB protein homolog; s 96.4 0.0023 7.7E-08 51.2 3.7 26 62-87 3-28 (169)
215 1fnn_A CDC6P, cell division co 96.4 0.0026 8.8E-08 55.3 4.2 24 64-87 45-68 (389)
216 2cvh_A DNA repair and recombin 96.3 0.0023 8E-08 51.2 3.6 27 62-88 19-45 (220)
217 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0026 8.8E-08 51.1 3.7 26 62-87 22-47 (235)
218 1upt_A ARL1, ADP-ribosylation 96.3 0.0034 1.2E-07 47.7 4.3 26 61-86 5-30 (171)
219 3pxi_A Negative regulator of g 96.3 0.0028 9.7E-08 61.1 4.6 33 62-94 200-242 (758)
220 1zd9_A ADP-ribosylation factor 96.3 0.0026 8.8E-08 49.9 3.5 28 59-86 18-45 (188)
221 1m7b_A RND3/RHOE small GTP-bin 96.3 0.0026 8.9E-08 49.6 3.5 28 59-86 3-30 (184)
222 2r2a_A Uncharacterized protein 96.3 0.0029 9.8E-08 51.7 3.8 26 61-86 3-28 (199)
223 2orw_A Thymidine kinase; TMTK, 96.3 0.0028 9.7E-08 50.8 3.7 25 63-87 3-27 (184)
224 1sxj_D Activator 1 41 kDa subu 96.3 0.0023 7.8E-08 55.0 3.3 23 66-88 61-83 (353)
225 1g8p_A Magnesium-chelatase 38 96.3 0.0016 5.4E-08 56.1 2.2 23 66-88 48-70 (350)
226 1sxj_C Activator 1 40 kDa subu 96.2 0.0026 8.8E-08 55.2 3.5 24 66-89 49-72 (340)
227 1z2a_A RAS-related protein RAB 96.2 0.0031 1E-07 47.7 3.5 26 61-86 3-28 (168)
228 1z06_A RAS-related protein RAB 96.2 0.003 1E-07 49.4 3.6 28 59-86 16-43 (189)
229 2qgz_A Helicase loader, putati 96.2 0.0035 1.2E-07 54.3 4.2 38 63-100 152-195 (308)
230 1htw_A HI0065; nucleotide-bind 96.2 0.004 1.4E-07 48.9 4.1 26 62-87 32-57 (158)
231 2a9k_A RAS-related protein RAL 96.2 0.0032 1.1E-07 48.5 3.5 26 61-86 16-41 (187)
232 1iqp_A RFCS; clamp loader, ext 96.2 0.0032 1.1E-07 53.3 3.8 24 65-88 48-71 (327)
233 1r6b_X CLPA protein; AAA+, N-t 96.2 0.0035 1.2E-07 60.3 4.4 39 60-98 484-525 (758)
234 1sxj_E Activator 1 40 kDa subu 96.2 0.0034 1.2E-07 54.2 3.9 22 66-87 39-60 (354)
235 1jr3_A DNA polymerase III subu 96.2 0.0038 1.3E-07 54.0 4.3 28 63-90 38-65 (373)
236 2f7s_A C25KG, RAS-related prot 96.1 0.0033 1.1E-07 50.3 3.5 26 60-85 22-47 (217)
237 2h57_A ADP-ribosylation factor 96.1 0.0026 8.9E-08 49.8 2.8 28 60-87 18-45 (190)
238 2z4s_A Chromosomal replication 96.1 0.0033 1.1E-07 57.1 3.9 25 63-87 130-154 (440)
239 1n0w_A DNA repair protein RAD5 96.1 0.0034 1.2E-07 51.0 3.5 25 62-86 23-47 (243)
240 1ypw_A Transitional endoplasmi 96.1 0.0018 6.1E-08 63.4 2.1 33 62-94 510-542 (806)
241 3con_A GTPase NRAS; structural 96.1 0.0034 1.2E-07 49.0 3.3 27 61-87 19-45 (190)
242 2bov_A RAla, RAS-related prote 96.1 0.0041 1.4E-07 48.9 3.8 27 60-86 11-37 (206)
243 2i3b_A HCR-ntpase, human cance 96.1 0.0034 1.1E-07 50.8 3.3 23 65-87 3-25 (189)
244 4bas_A ADP-ribosylation factor 96.1 0.0035 1.2E-07 49.1 3.3 27 59-85 13-39 (199)
245 2lkc_A Translation initiation 96.1 0.0057 1.9E-07 46.8 4.5 26 60-85 5-30 (178)
246 3clv_A RAB5 protein, putative; 96.1 0.0062 2.1E-07 47.2 4.7 26 61-86 5-30 (208)
247 1kao_A RAP2A; GTP-binding prot 96.1 0.0042 1.4E-07 46.7 3.6 24 63-86 3-26 (167)
248 2chq_A Replication factor C sm 96.0 0.0037 1.3E-07 52.7 3.4 22 66-87 41-62 (319)
249 2ce2_X GTPase HRAS; signaling 96.0 0.0044 1.5E-07 46.4 3.5 24 63-86 3-26 (166)
250 2dr3_A UPF0273 protein PH0284; 96.0 0.0045 1.5E-07 50.3 3.7 25 62-86 22-46 (247)
251 1vma_A Cell division protein F 96.0 0.0048 1.7E-07 53.7 4.1 27 61-87 102-128 (306)
252 3oes_A GTPase rhebl1; small GT 96.0 0.0043 1.5E-07 49.2 3.5 26 61-86 22-47 (201)
253 3c5c_A RAS-like protein 12; GD 96.0 0.0046 1.6E-07 48.6 3.6 26 61-86 19-44 (187)
254 2hxs_A RAB-26, RAS-related pro 96.0 0.0056 1.9E-07 46.9 4.0 25 61-85 4-28 (178)
255 3e70_C DPA, signal recognition 96.0 0.0052 1.8E-07 54.0 4.3 27 61-87 127-153 (328)
256 2ew1_A RAS-related protein RAB 96.0 0.0044 1.5E-07 49.7 3.5 27 60-86 23-49 (201)
257 2eyu_A Twitching motility prot 96.0 0.0054 1.8E-07 52.0 4.2 27 61-87 23-49 (261)
258 2v9p_A Replication protein E1; 96.0 0.0046 1.6E-07 53.9 3.8 32 61-92 124-155 (305)
259 1np6_A Molybdopterin-guanine d 96.0 0.0053 1.8E-07 49.0 3.9 25 63-87 6-30 (174)
260 1nrj_B SR-beta, signal recogni 96.0 0.0052 1.8E-07 49.1 3.8 27 61-87 10-36 (218)
261 2dyk_A GTP-binding protein; GT 95.9 0.0056 1.9E-07 46.0 3.8 24 64-87 2-25 (161)
262 2p5s_A RAS and EF-hand domain 95.9 0.0052 1.8E-07 48.6 3.7 27 60-86 25-51 (199)
263 1ky3_A GTP-binding protein YPT 95.9 0.0053 1.8E-07 47.0 3.6 26 61-86 6-31 (182)
264 2fn4_A P23, RAS-related protei 95.9 0.0064 2.2E-07 46.5 4.0 26 61-86 7-32 (181)
265 2nzj_A GTP-binding protein REM 95.9 0.0054 1.9E-07 46.7 3.6 24 62-85 3-26 (175)
266 2g6b_A RAS-related protein RAB 95.9 0.0058 2E-07 46.9 3.7 27 60-86 7-33 (180)
267 1sxj_B Activator 1 37 kDa subu 95.9 0.0048 1.6E-07 52.1 3.5 22 66-87 45-66 (323)
268 1z0f_A RAB14, member RAS oncog 95.9 0.0056 1.9E-07 46.7 3.6 27 61-87 13-39 (179)
269 1z08_A RAS-related protein RAB 95.9 0.0054 1.8E-07 46.5 3.4 26 61-86 4-29 (170)
270 2gf9_A RAS-related protein RAB 95.9 0.0068 2.3E-07 47.3 4.1 27 60-86 19-45 (189)
271 2gj8_A MNME, tRNA modification 95.9 0.0053 1.8E-07 47.7 3.5 25 62-86 3-27 (172)
272 1u8z_A RAS-related protein RAL 95.9 0.0058 2E-07 45.9 3.5 25 62-86 3-27 (168)
273 1cr0_A DNA primase/helicase; R 95.9 0.0055 1.9E-07 52.0 3.8 26 62-87 34-59 (296)
274 2ged_A SR-beta, signal recogni 95.9 0.0063 2.2E-07 47.5 3.9 27 61-87 46-72 (193)
275 1a5t_A Delta prime, HOLB; zinc 95.9 0.0068 2.3E-07 52.7 4.5 30 62-91 23-52 (334)
276 3rhf_A Putative polyphosphate 95.9 0.013 4.5E-07 50.7 6.1 32 61-92 73-104 (289)
277 3tw8_B RAS-related protein RAB 95.9 0.0051 1.7E-07 47.0 3.2 25 61-85 7-31 (181)
278 2wji_A Ferrous iron transport 95.8 0.0055 1.9E-07 47.0 3.4 23 63-85 3-25 (165)
279 3pxi_A Negative regulator of g 95.8 0.0068 2.3E-07 58.5 4.7 41 60-100 517-563 (758)
280 1rj9_A FTSY, signal recognitio 95.8 0.0062 2.1E-07 52.9 4.0 26 62-87 101-126 (304)
281 2f9l_A RAB11B, member RAS onco 95.8 0.0058 2E-07 48.4 3.6 25 62-86 4-28 (199)
282 2wsm_A Hydrogenase expression/ 95.8 0.0069 2.4E-07 48.6 4.1 26 62-87 29-54 (221)
283 1g16_A RAS-related protein SEC 95.8 0.0059 2E-07 46.2 3.5 25 62-86 2-26 (170)
284 4dsu_A GTPase KRAS, isoform 2B 95.8 0.0056 1.9E-07 47.2 3.4 26 62-87 3-28 (189)
285 3tkl_A RAS-related protein RAB 95.8 0.0065 2.2E-07 47.4 3.7 26 61-86 14-39 (196)
286 1moz_A ARL1, ADP-ribosylation 95.8 0.0044 1.5E-07 47.8 2.7 24 61-84 16-39 (183)
287 3b9q_A Chloroplast SRP recepto 95.8 0.0068 2.3E-07 52.5 4.1 27 61-87 98-124 (302)
288 1wms_A RAB-9, RAB9, RAS-relate 95.8 0.0057 1.9E-07 46.8 3.3 26 61-86 5-30 (177)
289 3bc1_A RAS-related protein RAB 95.8 0.0066 2.3E-07 46.9 3.7 26 61-86 9-34 (195)
290 1c1y_A RAS-related protein RAP 95.8 0.0065 2.2E-07 45.8 3.5 24 63-86 3-26 (167)
291 1fzq_A ADP-ribosylation factor 95.8 0.0066 2.2E-07 47.4 3.7 27 60-86 13-39 (181)
292 2b8t_A Thymidine kinase; deoxy 95.8 0.007 2.4E-07 50.4 4.0 27 61-87 10-36 (223)
293 3llu_A RAS-related GTP-binding 95.8 0.0041 1.4E-07 49.2 2.4 28 59-86 16-43 (196)
294 2il1_A RAB12; G-protein, GDP, 95.8 0.0057 1.9E-07 48.2 3.2 25 61-85 24-48 (192)
295 2erx_A GTP-binding protein DI- 95.8 0.0065 2.2E-07 45.9 3.4 24 62-85 2-25 (172)
296 1r2q_A RAS-related protein RAB 95.8 0.005 1.7E-07 46.5 2.7 26 61-86 4-29 (170)
297 1ek0_A Protein (GTP-binding pr 95.7 0.0059 2E-07 46.1 3.2 24 63-86 3-26 (170)
298 3pqc_A Probable GTP-binding pr 95.7 0.0095 3.3E-07 46.1 4.4 26 61-86 21-46 (195)
299 2y8e_A RAB-protein 6, GH09086P 95.7 0.0061 2.1E-07 46.5 3.2 26 61-86 12-37 (179)
300 2efe_B Small GTP-binding prote 95.7 0.0066 2.3E-07 46.6 3.4 26 61-86 10-35 (181)
301 3q72_A GTP-binding protein RAD 95.7 0.0063 2.2E-07 46.0 3.2 22 63-84 2-23 (166)
302 2hf9_A Probable hydrogenase ni 95.7 0.0078 2.7E-07 48.4 4.0 26 62-87 37-62 (226)
303 3tif_A Uncharacterized ABC tra 95.7 0.0056 1.9E-07 51.0 3.1 25 62-86 30-54 (235)
304 1z0j_A RAB-22, RAS-related pro 95.7 0.0065 2.2E-07 46.0 3.3 26 62-87 5-30 (170)
305 2px0_A Flagellar biosynthesis 95.7 0.0074 2.5E-07 52.1 3.9 27 61-87 103-129 (296)
306 3kkq_A RAS-related protein M-R 95.7 0.0088 3E-07 46.2 4.0 26 61-86 16-41 (183)
307 2qu8_A Putative nucleolar GTP- 95.7 0.0084 2.9E-07 48.7 4.0 25 61-85 27-51 (228)
308 3lxx_A GTPase IMAP family memb 95.7 0.0067 2.3E-07 49.7 3.4 26 61-86 27-52 (239)
309 2gco_A H9, RHO-related GTP-bin 95.7 0.0095 3.3E-07 47.2 4.2 26 61-86 23-48 (201)
310 1u0j_A DNA replication protein 95.7 0.0092 3.1E-07 51.2 4.3 27 63-89 104-130 (267)
311 1ojl_A Transcriptional regulat 95.6 0.0067 2.3E-07 52.3 3.4 23 65-87 27-49 (304)
312 3q85_A GTP-binding protein REM 95.6 0.0079 2.7E-07 45.6 3.4 22 64-85 3-24 (169)
313 2pcj_A ABC transporter, lipopr 95.6 0.0062 2.1E-07 50.3 3.0 25 62-86 29-53 (224)
314 1lw7_A Transcriptional regulat 95.6 0.0067 2.3E-07 53.4 3.4 28 63-90 170-197 (365)
315 2vhj_A Ntpase P4, P4; non- hyd 95.6 0.0064 2.2E-07 53.7 3.2 32 63-94 123-156 (331)
316 2hup_A RAS-related protein RAB 95.6 0.0076 2.6E-07 47.9 3.4 26 61-86 27-52 (201)
317 2zej_A Dardarin, leucine-rich 95.6 0.0062 2.1E-07 47.6 2.8 22 64-85 3-24 (184)
318 1nlf_A Regulatory protein REPA 95.6 0.0071 2.4E-07 51.0 3.3 25 62-86 29-53 (279)
319 3kl4_A SRP54, signal recogniti 95.6 0.0091 3.1E-07 54.5 4.2 27 61-87 95-121 (433)
320 2qm8_A GTPase/ATPase; G protei 95.6 0.0094 3.2E-07 52.3 4.2 27 61-87 53-79 (337)
321 2o52_A RAS-related protein RAB 95.6 0.0073 2.5E-07 47.9 3.2 25 61-85 23-47 (200)
322 2qen_A Walker-type ATPase; unk 95.6 0.007 2.4E-07 51.5 3.3 32 64-95 32-63 (350)
323 3p32_A Probable GTPase RV1496/ 95.6 0.0093 3.2E-07 52.5 4.1 27 61-87 77-103 (355)
324 2cbz_A Multidrug resistance-as 95.5 0.007 2.4E-07 50.5 3.1 25 62-86 30-54 (237)
325 1qvr_A CLPB protein; coiled co 95.5 0.006 2.1E-07 59.8 3.1 25 63-87 191-215 (854)
326 2www_A Methylmalonic aciduria 95.5 0.0098 3.3E-07 52.4 4.1 26 62-87 73-98 (349)
327 1svi_A GTP-binding protein YSX 95.5 0.0092 3.2E-07 46.5 3.6 26 61-86 21-46 (195)
328 1m2o_B GTP-binding protein SAR 95.5 0.0084 2.9E-07 47.2 3.3 26 61-86 21-46 (190)
329 3tqf_A HPR(Ser) kinase; transf 95.5 0.0099 3.4E-07 48.1 3.7 33 62-95 15-47 (181)
330 3dz8_A RAS-related protein RAB 95.5 0.0045 1.5E-07 48.6 1.7 27 61-87 21-47 (191)
331 1mv5_A LMRA, multidrug resista 95.5 0.0081 2.8E-07 50.1 3.3 26 62-87 27-52 (243)
332 2bme_A RAB4A, RAS-related prot 95.5 0.0083 2.8E-07 46.3 3.2 26 61-86 8-33 (186)
333 1mh1_A RAC1; GTP-binding, GTPa 95.5 0.01 3.4E-07 45.7 3.6 25 62-86 4-28 (186)
334 3dm5_A SRP54, signal recogniti 95.5 0.014 4.7E-07 53.5 5.0 26 62-87 99-124 (443)
335 1pui_A ENGB, probable GTP-bind 95.5 0.0053 1.8E-07 48.7 2.0 25 61-85 24-48 (210)
336 1qvr_A CLPB protein; coiled co 95.5 0.0081 2.8E-07 58.9 3.7 28 60-87 584-612 (854)
337 2og2_A Putative signal recogni 95.4 0.011 3.7E-07 52.7 4.2 27 61-87 155-181 (359)
338 2atv_A RERG, RAS-like estrogen 95.4 0.011 3.8E-07 46.4 3.9 26 61-86 26-51 (196)
339 2onk_A Molybdate/tungstate ABC 95.4 0.0087 3E-07 50.1 3.3 24 64-87 25-48 (240)
340 1b0u_A Histidine permease; ABC 95.4 0.0082 2.8E-07 50.8 3.2 26 62-87 31-56 (262)
341 1ksh_A ARF-like protein 2; sma 95.4 0.01 3.5E-07 46.0 3.5 26 61-86 16-41 (186)
342 2r8r_A Sensor protein; KDPD, P 95.4 0.013 4.3E-07 49.2 4.2 35 61-95 4-43 (228)
343 1r8s_A ADP-ribosylation factor 95.4 0.011 3.8E-07 44.5 3.6 24 64-87 1-24 (164)
344 1vg8_A RAS-related protein RAB 95.4 0.011 3.6E-07 46.6 3.6 27 61-87 6-32 (207)
345 3nbx_X ATPase RAVA; AAA+ ATPas 95.4 0.0061 2.1E-07 56.6 2.5 24 65-88 43-66 (500)
346 1gwn_A RHO-related GTP-binding 95.4 0.0098 3.4E-07 47.7 3.5 26 61-86 26-51 (205)
347 3bwd_D RAC-like GTP-binding pr 95.4 0.011 3.9E-07 45.3 3.7 26 61-86 6-31 (182)
348 1yrb_A ATP(GTP)binding protein 95.4 0.014 4.8E-07 48.1 4.5 27 61-87 12-38 (262)
349 3t1o_A Gliding protein MGLA; G 95.4 0.01 3.5E-07 46.0 3.5 27 61-87 12-38 (198)
350 2gf0_A GTP-binding protein DI- 95.4 0.013 4.5E-07 45.6 4.1 25 61-85 6-30 (199)
351 2gno_A DNA polymerase III, gam 95.4 0.053 1.8E-06 46.9 8.3 25 63-87 18-42 (305)
352 4g1u_C Hemin import ATP-bindin 95.4 0.0084 2.9E-07 51.0 3.1 25 62-86 36-60 (266)
353 2zu0_C Probable ATP-dependent 95.4 0.011 3.6E-07 50.3 3.7 25 62-86 45-69 (267)
354 3b85_A Phosphate starvation-in 95.4 0.0068 2.3E-07 49.7 2.4 24 63-86 22-45 (208)
355 2atx_A Small GTP binding prote 95.4 0.0096 3.3E-07 46.6 3.2 26 61-86 16-41 (194)
356 3gfo_A Cobalt import ATP-bindi 95.4 0.0082 2.8E-07 51.4 3.0 26 62-87 33-58 (275)
357 2olj_A Amino acid ABC transpor 95.3 0.009 3.1E-07 50.8 3.2 26 62-87 49-74 (263)
358 2f1r_A Molybdopterin-guanine d 95.3 0.0049 1.7E-07 49.1 1.4 24 64-87 3-26 (171)
359 2d2e_A SUFC protein; ABC-ATPas 95.3 0.01 3.5E-07 49.8 3.5 25 62-86 28-52 (250)
360 2ewv_A Twitching motility prot 95.3 0.012 4E-07 52.4 4.0 26 62-87 135-160 (372)
361 1zj6_A ADP-ribosylation factor 95.3 0.012 4.2E-07 45.7 3.7 25 61-85 14-38 (187)
362 2b6h_A ADP-ribosylation factor 95.3 0.012 4.1E-07 46.4 3.7 25 61-85 27-51 (192)
363 3cph_A RAS-related protein SEC 95.3 0.012 4.1E-07 46.5 3.7 26 61-86 18-43 (213)
364 3q3j_B RHO-related GTP-binding 95.3 0.012 4.2E-07 47.3 3.7 26 61-86 25-50 (214)
365 2ghi_A Transport protein; mult 95.3 0.0094 3.2E-07 50.4 3.1 26 62-87 45-70 (260)
366 2zts_A Putative uncharacterize 95.3 0.013 4.4E-07 47.6 3.9 24 62-85 29-52 (251)
367 1ji0_A ABC transporter; ATP bi 95.3 0.0091 3.1E-07 49.8 3.0 26 62-87 31-56 (240)
368 1g6h_A High-affinity branched- 95.3 0.009 3.1E-07 50.3 3.0 26 62-87 32-57 (257)
369 2ff7_A Alpha-hemolysin translo 95.3 0.0091 3.1E-07 50.1 3.0 26 62-87 34-59 (247)
370 1f6b_A SAR1; gtpases, N-termin 95.3 0.011 3.9E-07 46.8 3.5 25 61-85 23-47 (198)
371 3t5g_A GTP-binding protein RHE 95.3 0.0093 3.2E-07 45.9 2.8 25 62-86 5-29 (181)
372 2ixe_A Antigen peptide transpo 95.3 0.0095 3.2E-07 50.7 3.1 26 62-87 44-69 (271)
373 1vpl_A ABC transporter, ATP-bi 95.3 0.0098 3.4E-07 50.3 3.2 26 62-87 40-65 (256)
374 1pzn_A RAD51, DNA repair and r 95.3 0.011 3.8E-07 52.1 3.6 26 62-87 130-155 (349)
375 2pze_A Cystic fibrosis transme 95.3 0.0097 3.3E-07 49.3 3.0 26 62-87 33-58 (229)
376 2q3h_A RAS homolog gene family 95.3 0.012 4.2E-07 46.2 3.5 26 60-85 17-42 (201)
377 3lxw_A GTPase IMAP family memb 95.3 0.011 3.8E-07 49.2 3.4 26 61-86 19-44 (247)
378 1xx6_A Thymidine kinase; NESG, 95.2 0.015 5.1E-07 47.2 4.0 32 61-92 6-40 (191)
379 1sgw_A Putative ABC transporte 95.2 0.0085 2.9E-07 49.4 2.6 26 62-87 34-59 (214)
380 2iwr_A Centaurin gamma 1; ANK 95.2 0.0095 3.3E-07 45.7 2.7 25 62-86 6-30 (178)
381 3hr8_A Protein RECA; alpha and 95.2 0.013 4.4E-07 52.2 3.8 26 62-87 60-85 (356)
382 2fg5_A RAB-22B, RAS-related pr 95.2 0.012 4.1E-07 46.2 3.3 26 61-86 21-46 (192)
383 3reg_A RHO-like small GTPase; 95.2 0.012 4.2E-07 46.0 3.3 26 61-86 21-46 (194)
384 2cxx_A Probable GTP-binding pr 95.2 0.011 3.7E-07 45.7 3.0 23 64-86 2-24 (190)
385 1r6b_X CLPA protein; AAA+, N-t 95.2 0.014 4.7E-07 56.2 4.2 26 62-87 206-231 (758)
386 2i1q_A DNA repair and recombin 95.2 0.01 3.5E-07 51.1 3.1 25 62-86 97-121 (322)
387 2yhs_A FTSY, cell division pro 95.2 0.014 4.9E-07 54.3 4.1 27 61-87 291-317 (503)
388 2yz2_A Putative ABC transporte 95.2 0.011 3.7E-07 50.1 3.1 26 62-87 32-57 (266)
389 1x3s_A RAS-related protein RAB 95.1 0.012 4.2E-07 45.6 3.2 26 61-86 13-38 (195)
390 2qi9_C Vitamin B12 import ATP- 95.1 0.011 3.7E-07 49.8 3.0 26 62-87 25-50 (249)
391 1zbd_A Rabphilin-3A; G protein 95.1 0.015 5.1E-07 45.8 3.6 26 61-86 6-31 (203)
392 2ihy_A ABC transporter, ATP-bi 95.1 0.011 3.8E-07 50.6 3.0 26 62-87 46-71 (279)
393 2j1l_A RHO-related GTP-binding 95.1 0.014 4.8E-07 46.8 3.5 25 61-85 32-56 (214)
394 1zu4_A FTSY; GTPase, signal re 95.1 0.017 5.7E-07 50.5 4.1 27 61-87 103-129 (320)
395 2fh5_B SR-beta, signal recogni 95.1 0.015 5E-07 46.3 3.4 27 61-87 5-31 (214)
396 2nq2_C Hypothetical ABC transp 95.0 0.012 4.1E-07 49.6 3.0 25 62-86 30-54 (253)
397 2xtp_A GTPase IMAP family memb 95.0 0.016 5.4E-07 48.0 3.7 26 61-86 20-45 (260)
398 3k53_A Ferrous iron transport 95.0 0.015 5.2E-07 48.8 3.6 24 63-86 3-26 (271)
399 3cbq_A GTP-binding protein REM 95.0 0.012 3.9E-07 46.8 2.7 24 61-84 21-44 (195)
400 3k1j_A LON protease, ATP-depen 95.0 0.012 4.2E-07 55.4 3.3 26 64-89 61-86 (604)
401 2p67_A LAO/AO transport system 95.0 0.018 6E-07 50.4 4.0 27 61-87 54-80 (341)
402 4gzl_A RAS-related C3 botulinu 95.0 0.017 5.8E-07 46.0 3.6 26 61-86 28-53 (204)
403 2fna_A Conserved hypothetical 95.0 0.019 6.5E-07 48.8 4.2 27 64-90 31-57 (357)
404 3jvv_A Twitching mobility prot 95.0 0.019 6.4E-07 51.0 4.2 34 64-97 124-161 (356)
405 2gza_A Type IV secretion syste 94.9 0.011 3.8E-07 52.3 2.6 27 62-88 174-200 (361)
406 2bcg_Y Protein YP2, GTP-bindin 94.9 0.015 5.2E-07 45.9 3.2 26 61-86 6-31 (206)
407 2zr9_A Protein RECA, recombina 94.9 0.016 5.5E-07 51.1 3.6 34 62-95 60-98 (349)
408 2fv8_A H6, RHO-related GTP-bin 94.9 0.014 4.6E-07 46.5 2.8 25 62-86 24-48 (207)
409 3fvq_A Fe(3+) IONS import ATP- 94.9 0.016 5.5E-07 51.6 3.5 25 62-86 29-53 (359)
410 2v3c_C SRP54, signal recogniti 94.9 0.013 4.6E-07 53.3 3.1 26 62-87 98-123 (432)
411 1zcb_A G alpha I/13; GTP-bindi 94.9 0.017 5.7E-07 51.4 3.6 26 61-86 31-56 (362)
412 1v5w_A DMC1, meiotic recombina 94.9 0.022 7.4E-07 49.9 4.3 25 62-86 121-145 (343)
413 2g3y_A GTP-binding protein GEM 94.9 0.018 6.2E-07 46.9 3.6 25 61-85 35-59 (211)
414 2yyz_A Sugar ABC transporter, 94.8 0.018 6.2E-07 51.2 3.6 25 62-86 28-52 (359)
415 1w5s_A Origin recognition comp 94.8 0.017 5.7E-07 50.6 3.4 26 62-87 49-76 (412)
416 3a1s_A Iron(II) transport prot 94.8 0.016 5.6E-07 48.6 3.2 25 61-85 3-27 (258)
417 2x77_A ADP-ribosylation factor 94.8 0.014 4.8E-07 45.4 2.6 24 61-84 20-43 (189)
418 2npi_A Protein CLP1; CLP1-PCF1 94.8 0.015 5.2E-07 53.3 3.1 26 62-87 137-162 (460)
419 3gj0_A GTP-binding nuclear pro 94.7 0.021 7.2E-07 45.8 3.6 29 59-87 11-40 (221)
420 3rlf_A Maltose/maltodextrin im 94.7 0.019 6.6E-07 51.5 3.7 26 62-87 28-53 (381)
421 2it1_A 362AA long hypothetical 94.7 0.02 6.7E-07 51.1 3.7 25 62-86 28-52 (362)
422 2j37_W Signal recognition part 94.7 0.02 7E-07 53.2 3.9 27 61-87 99-125 (504)
423 2j0v_A RAC-like GTP-binding pr 94.7 0.024 8.3E-07 44.9 3.9 26 61-86 7-32 (212)
424 3sop_A Neuronal-specific septi 94.7 0.018 6.2E-07 48.9 3.3 24 64-87 3-26 (270)
425 1p9r_A General secretion pathw 94.7 0.024 8.3E-07 51.4 4.3 27 62-88 166-192 (418)
426 3f9v_A Minichromosome maintena 94.7 0.0071 2.4E-07 57.2 0.7 29 64-92 328-356 (595)
427 2cjw_A GTP-binding protein GEM 94.7 0.022 7.5E-07 45.0 3.5 25 62-86 5-29 (192)
428 1v43_A Sugar-binding transport 94.7 0.021 7.1E-07 51.1 3.7 25 62-86 36-60 (372)
429 2z43_A DNA repair and recombin 94.6 0.022 7.4E-07 49.4 3.7 26 62-87 106-131 (324)
430 2pjz_A Hypothetical protein ST 94.6 0.018 6E-07 48.9 3.0 25 63-87 30-54 (263)
431 2fu5_C RAS-related protein RAB 94.6 0.011 3.9E-07 45.5 1.7 26 61-86 6-31 (183)
432 1z47_A CYSA, putative ABC-tran 94.6 0.02 6.9E-07 50.9 3.5 25 62-86 40-64 (355)
433 2bbs_A Cystic fibrosis transme 94.6 0.018 6.3E-07 49.6 3.0 25 62-86 63-87 (290)
434 3lda_A DNA repair protein RAD5 94.6 0.02 6.8E-07 51.6 3.3 25 62-86 177-201 (400)
435 1g29_1 MALK, maltose transport 94.5 0.023 7.8E-07 50.8 3.5 25 62-86 28-52 (372)
436 3tui_C Methionine import ATP-b 94.4 0.025 8.7E-07 50.5 3.7 25 62-86 53-77 (366)
437 1u94_A RECA protein, recombina 94.4 0.026 8.7E-07 50.1 3.7 33 62-94 62-99 (356)
438 3kta_A Chromosome segregation 94.4 0.03 1E-06 43.6 3.7 25 65-89 28-52 (182)
439 3d31_A Sulfate/molybdate ABC t 94.4 0.017 5.6E-07 51.2 2.4 25 62-86 25-49 (348)
440 3cpj_B GTP-binding protein YPT 94.4 0.028 9.4E-07 45.3 3.5 26 61-86 11-36 (223)
441 1j8m_F SRP54, signal recogniti 94.4 0.03 1E-06 48.3 3.9 26 62-87 97-122 (297)
442 3gd7_A Fusion complex of cysti 94.3 0.026 8.7E-07 50.8 3.5 24 62-85 46-69 (390)
443 1ls1_A Signal recognition part 94.3 0.033 1.1E-06 47.9 4.1 26 62-87 97-122 (295)
444 3l0i_B RAS-related protein RAB 94.3 0.0067 2.3E-07 47.9 -0.4 24 61-84 31-54 (199)
445 3nh6_A ATP-binding cassette SU 94.2 0.015 5.2E-07 50.6 1.8 26 62-87 79-104 (306)
446 3bh0_A DNAB-like replicative h 94.2 0.036 1.2E-06 47.9 4.0 26 62-87 67-92 (315)
447 3upu_A ATP-dependent DNA helic 94.1 0.03 1E-06 50.8 3.6 23 65-87 47-69 (459)
448 2xxa_A Signal recognition part 94.1 0.036 1.2E-06 50.4 4.2 27 61-87 98-124 (433)
449 3io5_A Recombination and repai 94.1 0.031 1.1E-06 49.3 3.6 29 57-87 24-52 (333)
450 2pt7_A CAG-ALFA; ATPase, prote 94.1 0.018 6.1E-07 50.4 2.0 25 63-87 171-195 (330)
451 4dkx_A RAS-related protein RAB 94.1 0.037 1.3E-06 45.3 3.7 26 60-85 10-35 (216)
452 3b1v_A Ferrous iron uptake tra 94.1 0.034 1.2E-06 47.2 3.6 24 63-86 3-26 (272)
453 4dhe_A Probable GTP-binding pr 94.0 0.018 6.1E-07 46.0 1.7 26 61-86 27-52 (223)
454 2rcn_A Probable GTPase ENGC; Y 94.0 0.032 1.1E-06 49.6 3.5 24 63-86 215-238 (358)
455 1oxx_K GLCV, glucose, ABC tran 94.0 0.017 5.9E-07 51.2 1.6 25 62-86 30-54 (353)
456 2yv5_A YJEQ protein; hydrolase 93.9 0.036 1.2E-06 47.7 3.5 25 62-87 164-188 (302)
457 2oap_1 GSPE-2, type II secreti 93.9 0.022 7.7E-07 52.9 2.3 26 62-87 259-284 (511)
458 2j9r_A Thymidine kinase; TK1, 93.9 0.049 1.7E-06 45.1 4.1 32 61-92 26-60 (214)
459 1nij_A Hypothetical protein YJ 93.9 0.033 1.1E-06 48.2 3.2 25 62-86 3-27 (318)
460 1ega_A Protein (GTP-binding pr 93.9 0.034 1.2E-06 47.7 3.2 25 61-85 6-30 (301)
461 2r6a_A DNAB helicase, replicat 93.9 0.042 1.4E-06 49.8 4.0 26 62-87 202-227 (454)
462 2yc2_C IFT27, small RAB-relate 93.8 0.013 4.6E-07 45.9 0.6 26 61-86 18-43 (208)
463 3ozx_A RNAse L inhibitor; ATP 93.8 0.041 1.4E-06 51.4 3.8 28 60-87 22-49 (538)
464 1tq4_A IIGP1, interferon-induc 93.7 0.041 1.4E-06 49.9 3.6 24 62-85 68-91 (413)
465 3e1s_A Exodeoxyribonuclease V, 93.7 0.043 1.5E-06 51.6 3.8 25 63-87 204-228 (574)
466 1tf7_A KAIC; homohexamer, hexa 93.7 0.038 1.3E-06 51.1 3.3 22 62-83 38-59 (525)
467 3iby_A Ferrous iron transport 93.7 0.039 1.3E-06 46.3 3.2 23 64-86 2-24 (256)
468 3i8s_A Ferrous iron transport 93.6 0.046 1.6E-06 46.2 3.6 24 63-86 3-26 (274)
469 1u0l_A Probable GTPase ENGC; p 93.6 0.035 1.2E-06 47.6 2.8 23 63-85 169-191 (301)
470 3iev_A GTP-binding protein ERA 93.6 0.042 1.5E-06 47.2 3.3 26 60-85 7-32 (308)
471 1ko7_A HPR kinase/phosphatase; 93.5 0.051 1.7E-06 47.5 3.8 32 62-94 143-174 (314)
472 4djt_A GTP-binding nuclear pro 93.5 0.019 6.4E-07 45.8 0.9 25 61-85 9-33 (218)
473 3r7w_A Gtpase1, GTP-binding pr 93.5 0.048 1.6E-06 46.8 3.6 25 62-86 2-26 (307)
474 3th5_A RAS-related C3 botulinu 92.6 0.013 4.5E-07 46.3 0.0 25 61-85 28-52 (204)
475 3o47_A ADP-ribosylation factor 93.5 0.048 1.7E-06 47.3 3.6 26 60-85 162-187 (329)
476 1ni3_A YCHF GTPase, YCHF GTP-b 93.5 0.049 1.7E-06 49.0 3.7 25 61-85 18-42 (392)
477 1xp8_A RECA protein, recombina 93.5 0.048 1.7E-06 48.5 3.6 34 62-95 73-111 (366)
478 2obl_A ESCN; ATPase, hydrolase 93.5 0.055 1.9E-06 47.7 3.9 27 62-88 70-96 (347)
479 1mky_A Probable GTP-binding pr 93.4 0.052 1.8E-06 49.0 3.8 26 61-86 178-203 (439)
480 2aka_B Dynamin-1; fusion prote 93.4 0.046 1.6E-06 45.8 3.3 26 61-86 24-49 (299)
481 1tf7_A KAIC; homohexamer, hexa 93.4 0.046 1.6E-06 50.5 3.5 26 62-87 280-305 (525)
482 2ffh_A Protein (FFH); SRP54, s 93.4 0.057 1.9E-06 49.1 4.0 26 62-87 97-122 (425)
483 2qnr_A Septin-2, protein NEDD5 93.4 0.041 1.4E-06 47.3 2.9 24 62-85 17-40 (301)
484 2qag_B Septin-6, protein NEDD5 93.3 0.045 1.5E-06 49.9 3.2 22 65-86 44-65 (427)
485 1jwy_B Dynamin A GTPase domain 93.3 0.064 2.2E-06 45.4 4.0 26 61-86 22-47 (315)
486 3c5h_A Glucocorticoid receptor 93.3 0.082 2.8E-06 43.9 4.6 25 61-85 17-50 (255)
487 1yqt_A RNAse L inhibitor; ATP- 93.3 0.053 1.8E-06 50.6 3.6 27 61-87 45-71 (538)
488 3cmu_A Protein RECA, recombina 93.2 0.04 1.4E-06 58.8 3.0 38 61-98 1425-1467(2050)
489 2q6t_A DNAB replication FORK h 93.1 0.065 2.2E-06 48.4 3.9 26 62-87 199-224 (444)
490 2dpy_A FLII, flagellum-specifi 93.1 0.066 2.3E-06 48.7 3.9 27 62-88 156-182 (438)
491 1h65_A Chloroplast outer envel 93.0 0.065 2.2E-06 44.8 3.6 26 61-86 37-62 (270)
492 3b5x_A Lipid A export ATP-bind 93.0 0.059 2E-06 50.5 3.5 26 62-87 368-393 (582)
493 2e87_A Hypothetical protein PH 92.9 0.065 2.2E-06 46.9 3.5 26 61-86 165-190 (357)
494 3b60_A Lipid A export ATP-bind 92.9 0.053 1.8E-06 50.8 3.1 26 62-87 368-393 (582)
495 3j16_B RLI1P; ribosome recycli 92.9 0.075 2.6E-06 50.4 4.1 28 60-87 100-127 (608)
496 1kjw_A Postsynaptic density pr 92.8 0.46 1.6E-05 40.8 8.7 104 62-180 104-229 (295)
497 4ag6_A VIRB4 ATPase, type IV s 92.8 0.065 2.2E-06 47.3 3.4 26 62-87 34-59 (392)
498 3kjh_A CO dehydrogenase/acetyl 92.8 0.057 2E-06 43.6 2.8 24 64-87 1-24 (254)
499 1knx_A Probable HPR(Ser) kinas 92.7 0.072 2.5E-06 46.6 3.4 33 62-95 146-178 (312)
500 2wkq_A NPH1-1, RAS-related C3 92.6 0.087 3E-06 44.5 3.9 26 61-86 153-178 (332)
No 1
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=4.4e-34 Score=239.15 Aligned_cols=140 Identities=25% Similarity=0.324 Sum_probs=128.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
|+|+|+|||||||+|+|++|+++||++|||++|++|+++..++++|+++++++++|+++|++++..++.+++.+ .
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~-----~ 75 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK-----H 75 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS-----S
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc-----C
Confidence 68999999999999999999999999999999999999999999999999999999999999999999988754 3
Q ss_pred CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc--chhhhhhh
Q 027791 144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL--CRKFLIKL 215 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~--~~~~~~~~ 215 (219)
.+||+||||||..|++.|+.. ..++.||+|++|++++ ++|+.+|++|+.||+.||.. |.+||.+|
T Consensus 76 ~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l-------~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l 147 (206)
T 3sr0_A 76 GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVV-------IERLSGRRINPETGEVYHVKYNPPPPGVKV 147 (206)
T ss_dssp SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH-------HHHHHTEEECTTTCCEEETTTBCCCTTCCC
T ss_pred CceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHH-------HHHHhCCccccCCCceeeeeccCCCCCcee
Confidence 589999999999999998653 3689999999999999 99999999999999999864 55666654
No 2
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.97 E-value=4.9e-32 Score=230.53 Aligned_cols=146 Identities=22% Similarity=0.335 Sum_probs=132.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~ 140 (219)
..-|+..|+|+|||||||+|+.|+++||++||+++|++|++...++++|+.+++++.+|.++|++++..++.+++.+..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~- 84 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEAD- 84 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGG-
T ss_pred ccccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcc-
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred cCCCeEEEeCccCCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccc---------cchh
Q 027791 141 RGESGFILDGIPRTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGW---------LCRK 210 (219)
Q Consensus 141 ~~~~g~IlDG~Pr~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~---------~~~~ 210 (219)
..+|||+||||++..|++.|+.. ..+|.||+|++|++++ ++|+.+|++|+.||+.||. .|..
T Consensus 85 -~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l-------~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~ 156 (230)
T 3gmt_A 85 -CANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEI-------IERMSGRRTHPASGRTYHVKFNPPKVEGKDDV 156 (230)
T ss_dssp -GTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHH-------HHHHHTEEEETTTTEEEETTTBCCSSTTBCTT
T ss_pred -cCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHH-------HHHHHcCCcccccCCcccccCCCCCccCcCCC
Confidence 35699999999999999999764 3689999999999999 9999999999999999985 4788
Q ss_pred hhhhh
Q 027791 211 FLIKL 215 (219)
Q Consensus 211 ~~~~~ 215 (219)
||..|
T Consensus 157 ~g~~L 161 (230)
T 3gmt_A 157 TGEPL 161 (230)
T ss_dssp TCCBC
T ss_pred ccCcc
Confidence 88755
No 3
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.97 E-value=5.9e-30 Score=215.90 Aligned_cols=130 Identities=22% Similarity=0.318 Sum_probs=117.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~ 140 (219)
.++..|+|+|||||||+|+|+.|+++||++|||++|++|+++..++++|+.+++++++|+++|++++..++.+++.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~- 105 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLV- 105 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHT-
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc-
Confidence 4667888999999999999999999999999999999999999999999999999999999999999999999997753
Q ss_pred cCCCeEEEeCccCCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCCCCC
Q 027791 141 RGESGFILDGIPRTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCL 198 (219)
Q Consensus 141 ~~~~g~IlDG~Pr~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~ 198 (219)
....|||+|||||+..|++.|+.. ..++.||+|++|++++ .+|+.+|..|.
T Consensus 106 ~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~-------~~Rl~~R~~~~ 157 (217)
T 3umf_A 106 DKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVM-------RKRLLKRAETS 157 (217)
T ss_dssp TTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHH-------HHHHSCC----
T ss_pred ccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHH-------HHHHhcccccC
Confidence 246799999999999999999764 5789999999999999 99999998665
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.95 E-value=8.7e-28 Score=204.32 Aligned_cols=146 Identities=26% Similarity=0.309 Sum_probs=132.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~ 140 (219)
.++++|+|+|+|||||||+|+.|++++|++||++++++|+....+++.++.+++++.+|..++++++..++..++....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~- 105 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ- 105 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc-
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999998887653
Q ss_pred cCCCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccc---------
Q 027791 141 RGESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGW--------- 206 (219)
Q Consensus 141 ~~~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~--------- 206 (219)
...+||+||||++..|++.++.. ..||.||+|++|++++ ++|+.+|..|+.||+.||.
T Consensus 106 -~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~-------~~Rl~~R~~~~~~g~~y~~~~~pp~~~~ 177 (243)
T 3tlx_A 106 -CKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVL-------VNRISGRLIHKPSGRIYHKIFNPPKVPF 177 (243)
T ss_dssp -GSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH-------HHHHHTEEEETTTTEEEETTTBCCSSTT
T ss_pred -ccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHH-------HHHHHcCCCCcccCcccccccCCCcccC
Confidence 36799999999999999888653 3689999999999999 9999999999999999984
Q ss_pred cchhhhhhh
Q 027791 207 LCRKFLIKL 215 (219)
Q Consensus 207 ~~~~~~~~~ 215 (219)
.|..||..|
T Consensus 178 ~~~~~~~~l 186 (243)
T 3tlx_A 178 RDDVTNEPL 186 (243)
T ss_dssp BCTTTCCBC
T ss_pred ccccccccc
Confidence 577777654
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.94 E-value=3.5e-27 Score=195.25 Aligned_cols=143 Identities=27% Similarity=0.455 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
|+|+|+|+|||||||+++.|++++|++++++++++++....+++.++.+.+++.+|..++++++..++.+++.... .+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~--~~ 78 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDD--CE 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGG--GT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccc--cc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999998887653 36
Q ss_pred CeEEEeCccCCHHHHHHHHhhC-----CCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccc---------cch
Q 027791 144 SGFILDGIPRTRIQAVSLEFCY-----TMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGW---------LCR 209 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~~~-----~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~---------~~~ 209 (219)
.+||+||||++..|++.+.... .+|.+|+|++|++++ ++|+.+|++|+.||+.||. .|.
T Consensus 79 ~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~-------~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~ 151 (216)
T 3dl0_A 79 RGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVL-------MERLTGRRICSVCGTTYHLVFNPPKTPGICD 151 (216)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGH-------HHHHHTEEEETTTCCEEETTTBCCSSTTBCT
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHH-------HHHHHCCCcCCccCCccccccCCCcccCccc
Confidence 7899999999999988886542 589999999999999 9999999999999999986 477
Q ss_pred hhhhhh
Q 027791 210 KFLIKL 215 (219)
Q Consensus 210 ~~~~~~ 215 (219)
.||..|
T Consensus 152 ~~~~~l 157 (216)
T 3dl0_A 152 KDGGEL 157 (216)
T ss_dssp TTCCBE
T ss_pred cccccc
Confidence 777655
No 6
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.94 E-value=9.6e-27 Score=192.39 Aligned_cols=143 Identities=27% Similarity=0.443 Sum_probs=128.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
|+|+|+|+|||||||+++.|++++|++++++++++++....+++.++.+.+++.+|..++++++..++.+++.... ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~--~~ 78 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDD--CQ 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGG--GT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccc--CC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999998887653 35
Q ss_pred CeEEEeCccCCHHHHHHHHhhC-----CCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccc---------cch
Q 027791 144 SGFILDGIPRTRIQAVSLEFCY-----TMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGW---------LCR 209 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~~~-----~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~---------~~~ 209 (219)
.+||+||||++..|++.+.... .+|.+|+|++|++++ ++|+.+|++|+.||+.||. .|.
T Consensus 79 ~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~-------~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~ 151 (216)
T 3fb4_A 79 KGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEEL-------MKRLTGRWICKTCGATYHTIFNPPAVEGICD 151 (216)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHHHHSEEEETTTCCEEETTTBCCSSTTBCT
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHHcCCCCCccCCccccccCCCCcccccc
Confidence 7899999999999988886532 489999999999999 9999999999999999986 466
Q ss_pred hhhhhh
Q 027791 210 KFLIKL 215 (219)
Q Consensus 210 ~~~~~~ 215 (219)
.||..|
T Consensus 152 ~~~~~l 157 (216)
T 3fb4_A 152 KDGGEL 157 (216)
T ss_dssp TTCCBE
T ss_pred cccCcc
Confidence 676654
No 7
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.94 E-value=3.6e-26 Score=190.38 Aligned_cols=137 Identities=20% Similarity=0.313 Sum_probs=121.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
++++|+|+|+|||||||+++.|++++|++|+++|+++++..+.+++.++.+++++.+|..++++.+..++.+++... .
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~--~ 81 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLG--V 81 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT--T
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc--c
Confidence 56899999999999999999999999999999999999988888899999999999999999999999998888763 2
Q ss_pred CCCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791 142 GESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL 207 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~ 207 (219)
.+.+||+||||++..|++.+... ..||.+|+|++|++++ ++|+.+|..|+.||+.||..
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~-------~~Rl~~R~~~~~~g~~y~~~ 145 (217)
T 3be4_A 82 CVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEI-------IERISGRCTHPASGRIYHVK 145 (217)
T ss_dssp TTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHH-------HHHHHTEEECTTTCCEEETT
T ss_pred cCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHHcCCCCccccCccccc
Confidence 35789999999999888877632 3689999999999999 99999999999999988864
No 8
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.93 E-value=3e-25 Score=185.92 Aligned_cols=142 Identities=22% Similarity=0.387 Sum_probs=126.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
|+|+|+|+|||||||+++.|++++|++++++|+++++.+..+++.++.+++++.+|..++++++..++.+.+... . +
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~--~-g 77 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESK--G-K 77 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH--C-T
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcc--c-C
Confidence 579999999999999999999999999999999999998888899999999999999999999999998888763 1 5
Q ss_pred CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCC-CCCcccc----------c
Q 027791 144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLT-CPCNTGW----------L 207 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~-~g~~~~~----------~ 207 (219)
.+||+||||++..|++.+... ..||.+|+|++|++++ ++|+.+|..|+. ||+.||. .
T Consensus 78 ~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~-------~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~ 150 (223)
T 2xb4_A 78 DGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVA-------KNRIMGRRICKNNPNHPNNIFIDAIKPNGDV 150 (223)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH-------HHHHHTBCEESSCTTSCCBTTCGGGCCBTTB
T ss_pred CeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHHcccCCccccCCccccccCCCcccccc
Confidence 689999999999888888643 3689999999999999 999999999987 9999987 4
Q ss_pred chhhhhhh
Q 027791 208 CRKFLIKL 215 (219)
Q Consensus 208 ~~~~~~~~ 215 (219)
|..||..|
T Consensus 151 ~~~~~~~l 158 (223)
T 2xb4_A 151 CRVCGGAL 158 (223)
T ss_dssp CTTTCCBE
T ss_pred cccccccc
Confidence 77776543
No 9
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.93 E-value=1.6e-25 Score=188.32 Aligned_cols=140 Identities=27% Similarity=0.365 Sum_probs=124.1
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhc
Q 027791 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (219)
Q Consensus 59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~ 138 (219)
.+.++++|+|+|+|||||||+++.|+++|+++|+++++++++....++++++.+++++..|..++++++..++.+++...
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~ 91 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETP 91 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSG
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence 34567899999999999999999999999999999999999988888899999999999999999999999999888765
Q ss_pred cccCCCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791 139 YYRGESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL 207 (219)
Q Consensus 139 ~~~~~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~ 207 (219)
. .+.+||+||||++..|++.|++. ..+|.+|+|+++++++ ++|+.+|..|+.||+.||..
T Consensus 92 ~--~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~-------~~Rl~~R~~~~~~g~~y~~~ 156 (233)
T 1ak2_A 92 P--CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLL-------IRRITGRLIHPQSGRSYHEE 156 (233)
T ss_dssp G--GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHH-------HHHHHTCEECTTTCCEEBTT
T ss_pred c--ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHHcCCcCCccCCccccc
Confidence 3 35689999999999988876543 3589999999999999 99999999999999998753
No 10
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.92 E-value=5.1e-25 Score=183.17 Aligned_cols=139 Identities=23% Similarity=0.349 Sum_probs=122.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~ 140 (219)
.++++|+|+|+|||||||+++.|+++++++++++|+++++..+.+++.++.+++++.+|..++++.+..++.+++....
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~- 80 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP- 80 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCG-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcc-
Confidence 4678999999999999999999999999999999999999888889999999999999999999999999988886321
Q ss_pred cCCCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791 141 RGESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL 207 (219)
Q Consensus 141 ~~~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~ 207 (219)
..+.+||+||||++..|++.++.. ..||.+|+|+++++++ ++|+.+|..|+.||..||..
T Consensus 81 ~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~-------~~R~~~r~~~~~~g~~y~~~ 145 (220)
T 1aky_A 81 ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL-------VARITGRLIHPASGRSYHKI 145 (220)
T ss_dssp GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHH-------HHHHHTEEECTTTCCEEETT
T ss_pred ccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHhCCCccCccCCccccc
Confidence 235689999999999888766532 3689999999999999 99999999999999988764
No 11
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.92 E-value=3.6e-25 Score=183.51 Aligned_cols=135 Identities=24% Similarity=0.353 Sum_probs=120.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
|+|+|+|+|||||||+++.|++++|++|+++++++++.+..+++.++.+++++.+|..++++++..++.+++.+.. ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~--~~ 78 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED--CR 78 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGG--GG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc--cC
Confidence 5799999999999999999999999999999999999888888899999999999999999999999988887642 24
Q ss_pred CeEEEeCccCCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791 144 SGFILDGIPRTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL 207 (219)
Q Consensus 144 ~g~IlDG~Pr~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~ 207 (219)
.+||+||||++..|++.+... ..||.+|+|+++++++ ++|+.+|..|+.||+.||..
T Consensus 79 ~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~-------~~R~~~R~~~~~~g~~~~~~ 136 (214)
T 1e4v_A 79 NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELI-------VDRIVGRRVHAPSGRVYHVK 136 (214)
T ss_dssp GCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHHHHTEEEETTTTEEEETT
T ss_pred CCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHHCCcccCCcCCccccc
Confidence 689999999999998888654 4689999999999999 99999999999999887753
No 12
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.91 E-value=7.6e-24 Score=177.02 Aligned_cols=136 Identities=22% Similarity=0.333 Sum_probs=120.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~ 140 (219)
.++++|+|+|+|||||||+++.|++++|++++++|++++.....++++++.+++++.+|..++++....++.+++.+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-- 82 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-- 82 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC--
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc--
Confidence 356899999999999999999999999999999999999988788899999999999999999988888887777652
Q ss_pred cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccc
Q 027791 141 RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGW 206 (219)
Q Consensus 141 ~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~ 206 (219)
.+.+||+||||++..|++.++....+|.+|+|+++++++ ++|+.+|..|+.||+.|+.
T Consensus 83 -~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~-------~~R~~~R~~~~~~~~~y~~ 140 (227)
T 1zd8_A 83 -TQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVI-------KQRLTARWIHPASGRVYNI 140 (227)
T ss_dssp -TTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHH-------HHHHTCEEEETTTTEEEET
T ss_pred -cCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHH-------HHHHHcCcCCCccCCcccc
Confidence 246799999999999988887767789999999999999 9999999999989876653
No 13
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.90 E-value=5.5e-24 Score=177.10 Aligned_cols=138 Identities=23% Similarity=0.312 Sum_probs=120.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
++++|+|+|+|||||||+++.|+++++++++++|++++.....+++.|+.+++++.+|..+|++.+..++.+++....+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 82 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA- 82 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc-
Confidence 5678999999999999999999999999999999999997777888999999999999999999888888877765321
Q ss_pred CCCeEEEeCccCCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791 142 GESGFILDGIPRTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL 207 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~ 207 (219)
...+||+||||++.++.+.+... ..||++|+|+++++++ ++|+.+|..|+.||+.|+..
T Consensus 83 ~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~-------~~R~~~r~~~~~~g~~~~~~ 142 (222)
T 1zak_A 83 QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELL-------VERVVGRRLDPVTGKIYHLK 142 (222)
T ss_dssp HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHH-------HHHHTTEEECTTTCCEEESS
T ss_pred cCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHH-------HHHHHcCCcccccCCccccc
Confidence 24689999999999888888754 3689999999999999 99999999999999977653
No 14
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.86 E-value=1.4e-21 Score=159.93 Aligned_cols=127 Identities=28% Similarity=0.412 Sum_probs=110.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~ 139 (219)
+.++++|+|+|+|||||||+++.|++++|++++++|+++++....+++.++.+++++.+|..++++....++.+++...
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~- 95 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP- 95 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG-
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc-
Confidence 4677899999999999999999999999999999999999987778889999999999999999988888888777653
Q ss_pred ccCCCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 140 YRGESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 140 ~~~~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
....+||+||+|++..+.+.+... ..||.+|+|++|++++ ++|+.+|.
T Consensus 96 -~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~-------~~Rl~~R~ 148 (201)
T 2cdn_A 96 -DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVL-------LERLKGRG 148 (201)
T ss_dssp -GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH-------HHHHHHHC
T ss_pred -cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHHcCC
Confidence 235679999999999888776543 2489999999999999 99998873
No 15
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.86 E-value=5e-21 Score=156.50 Aligned_cols=129 Identities=26% Similarity=0.423 Sum_probs=109.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc-CCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhc
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~-~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~ 138 (219)
+.+++.|+|+|+|||||||+++.|++++|++++++|+++++.. ..+++.++.+++++.+|...++++...++.+.+...
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 91 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN 91 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence 3567899999999999999999999999999999999999864 356778888999998999889888888887776543
Q ss_pred cccCCCeEEEeCccCCHHHHHHHHhhC-CCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 139 YYRGESGFILDGIPRTRIQAVSLEFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 139 ~~~~~~g~IlDG~Pr~~~qa~~l~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
...+..+||+||+|++.+++..++... .+|.+|+|++|++++ ++|+.+|.
T Consensus 92 l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~-------~~Rl~~R~ 142 (203)
T 1ukz_A 92 VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIM-------LERLLERG 142 (203)
T ss_dssp HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHH-------HHHHHHHH
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHH-------HHHHHhcc
Confidence 222346899999999999888887543 589999999999999 99998774
No 16
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.85 E-value=8.6e-21 Score=153.43 Aligned_cols=126 Identities=22% Similarity=0.330 Sum_probs=110.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
+++.|+|+|+|||||||+++.|++++|++++++|++++.....+++.++.+++.+.+|+.++++.+..++.+.+.... .
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-~ 86 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV-N 86 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc-c
Confidence 567899999999999999999999999999999999998877778899999999999999999888888887776543 2
Q ss_pred CCCeEEEeCccCCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 142 GESGFILDGIPRTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
.+.++|+||+|++..+.+.+... ..++.+|+|++|++++ .+|+.+|.
T Consensus 87 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~-------~~R~~~R~ 134 (196)
T 2c95_A 87 TSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETM-------TQRLLKRG 134 (196)
T ss_dssp TCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHH-------HHHHHHHH
T ss_pred cCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHH-------HHHHHccC
Confidence 35789999999999888777543 4689999999999999 99998875
No 17
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=152.70 Aligned_cols=127 Identities=25% Similarity=0.367 Sum_probs=110.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
+++.|+|+|+|||||||+++.|++++|++++++|++++.+...+++.++.+.+++.+|..++++.+..++.+.+.... .
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-~ 89 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASL-G 89 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc-c
Confidence 457899999999999999999999999999999999998876678889999999999999999988888887776542 2
Q ss_pred CCCeEEEeCccCCHHHHHHHHhhC-CCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 142 GESGFILDGIPRTRIQAVSLEFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
.+.++|+||+|.+..+.+.+.... .+|.+|+|++|++++ .+|+.+|..
T Consensus 90 ~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~-------~~R~~~R~~ 138 (199)
T 2bwj_A 90 DTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTM-------TNRLLQMSR 138 (199)
T ss_dssp SCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHH-------HHHHHHTCC
T ss_pred cCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHH-------HHHHHcCCC
Confidence 357899999999998887776543 689999999999999 999998864
No 18
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.83 E-value=1.5e-20 Score=151.28 Aligned_cols=120 Identities=25% Similarity=0.403 Sum_probs=103.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
+++.|+|+|+|||||||+++.|++++|++++++|+++++.+..+++.++.+++++.+|...+++.+..++.+.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~----- 77 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA----- 77 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc-----
Confidence 578899999999999999999999999999999999998877788899999999999999998887777665442
Q ss_pred CCCeEEEeCccCCHHHHHHHHhhC-----CCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 142 GESGFILDGIPRTRIQAVSLEFCY-----TMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~~-----~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
.++|+||+|++..+.+.++... .+|.+|+|++|++++ ++|+.+|.
T Consensus 78 --~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~-------~~R~~~R~ 127 (186)
T 3cm0_A 78 --ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEEL-------VRRILRRA 127 (186)
T ss_dssp --SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHH-------HHHHHHHH
T ss_pred --CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH-------HHHHHhcc
Confidence 2499999999988876654321 378999999999999 99998774
No 19
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.83 E-value=6.3e-20 Score=147.38 Aligned_cols=124 Identities=23% Similarity=0.329 Sum_probs=107.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
.++.|+|+|+|||||||+++.|++++|++++++|++++++...+++.++.+.+++.+|...+++....++...+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~--- 81 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN--- 81 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS---
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc---
Confidence 45689999999999999999999999999999999999887677888999999999999889888888888777653
Q ss_pred CCCeEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 142 GESGFILDGIPRTRIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
.+.++|+||+|++..+.+.+... ..+|.+|+|++|++++ ++|+.+|.
T Consensus 82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~-------~~R~~~R~ 132 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVM-------TQRLLKRG 132 (194)
T ss_dssp TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHH-------HHHHHHHH
T ss_pred CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHH-------HHHHHhcc
Confidence 35689999999999887776432 2589999999999999 99998875
No 20
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.82 E-value=1.2e-19 Score=145.90 Aligned_cols=127 Identities=21% Similarity=0.426 Sum_probs=102.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcC-CCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc-
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY- 139 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~-~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~- 139 (219)
+++.|+|+|+|||||||+++.|++++|++||+.|+++++... ..++.++.+++++.+|...++++...++...+....
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 367899999999999999999999999999999999988763 456778888888889999998887777766554321
Q ss_pred -ccCCCeEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 140 -YRGESGFILDGIPRTRIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 140 -~~~~~g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
...+..||+||+|.+..+.+.+... ..+|.+|+|++|++++ ++|+.+|.
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~-------~~R~~~R~ 135 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC-------IERCLERG 135 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHH-------HHHHHHHH
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHH-------HHHHHccc
Confidence 1235689999999998876655432 2478999999999999 99998774
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.75 E-value=1.7e-17 Score=140.09 Aligned_cols=132 Identities=20% Similarity=0.314 Sum_probs=111.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
++.+|+|+|+|||||||+++.|++++|+.+++.|++++......++.+..+...+.++...++..+.+.+...+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~--- 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR--- 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---
Confidence 46789999999999999999999999999999999988765555667888888888888889888877777666542
Q ss_pred CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCc
Q 027791 142 GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCN 203 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~ 203 (219)
.+.+|++||+|++..+++.+.....++++|+|+++++++ ++|+.+|.++..+|+.
T Consensus 103 ~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~-------l~r~~~r~~~~lSgrv 157 (246)
T 2bbw_A 103 RGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETL-------KDRLSRRWIHPPSGRV 157 (246)
T ss_dssp TTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHH-------HHHHHTEEEETTTTEE
T ss_pred CCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHH-------HHHHHcCCCcCCCCCc
Confidence 346799999999987777776656789999999999999 9999999988888854
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.66 E-value=3.3e-16 Score=122.83 Aligned_cols=118 Identities=16% Similarity=0.133 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCC----chhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR----SALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~----s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~ 139 (219)
+.|+|+|+|||||||+++.| +++|++++++++++++..... ...........+. .+++....++.+.+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~-- 75 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGT-- 75 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCS--
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHh--
Confidence 67999999999999999999 999999999999999875421 1222222222221 1223344445555532
Q ss_pred ccCCCeEEEeCccCCHHHHHHHHhhC-CCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 140 YRGESGFILDGIPRTRIQAVSLEFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 140 ~~~~~g~IlDG~Pr~~~qa~~l~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
..+..+|+||+ .+..+.+.+.... .++.+|+|++|++++ ++|+.+|..
T Consensus 76 -~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~-------~~R~~~R~~ 124 (179)
T 3lw7_A 76 -SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIR-------YKRMIERLR 124 (179)
T ss_dssp -CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHH-------HHHHHTCC-
T ss_pred -cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHH-------HHHHHhccC
Confidence 23578999999 8888888887653 678999999999999 999998853
No 23
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.57 E-value=2.5e-14 Score=114.77 Aligned_cols=114 Identities=13% Similarity=0.042 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHH-----------HH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI-----------FA 129 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i-----------~~ 129 (219)
+.|+|+|+|||||||+++.|++++ |++++++++ +..++.++.+++.+.+|...++... ..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999998 999998863 2446678888888877765554222 11
Q ss_pred HHHHHHHhccccCCCeEEEe----------CccCCHH--HHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791 130 LLSKRLEEGYYRGESGFILD----------GIPRTRI--QAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVD 193 (219)
Q Consensus 130 Ll~~~l~~~~~~~~~g~IlD----------G~Pr~~~--qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~ 193 (219)
++...+. .+..+|+| |+|+..+ +...+.. ...||.+|+|++|++++ ++|+.+
T Consensus 75 ~i~~~l~-----~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~-------~~Rl~~ 142 (195)
T 2pbr_A 75 KIIPDLK-----RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIA-------LRRLKE 142 (195)
T ss_dssp THHHHHH-----TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHHHHT
T ss_pred HHHHHHh-----CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHH-------HHHhhc
Confidence 1222222 24567778 6666432 3333321 12689999999999999 999987
Q ss_pred CC
Q 027791 194 GS 195 (219)
Q Consensus 194 R~ 195 (219)
|.
T Consensus 143 r~ 144 (195)
T 2pbr_A 143 KN 144 (195)
T ss_dssp TT
T ss_pred cC
Confidence 53
No 24
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.54 E-value=1.4e-14 Score=118.33 Aligned_cols=124 Identities=11% Similarity=0.055 Sum_probs=87.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHH-------
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSK------- 133 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~------- 133 (219)
.+++.|+|+|+|||||||+++.|+++++.+++++ +++++. ..+++.++.+++++.++..++++....+...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN 85 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999988888 556643 3357888888888877777776544333321
Q ss_pred HHHhccccCCCeEEEeCccCCH--HH-------HHHHH---h-hCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 134 RLEEGYYRGESGFILDGIPRTR--IQ-------AVSLE---F-CYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 134 ~l~~~~~~~~~g~IlDG~Pr~~--~q-------a~~l~---~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
.+... ...+..+|+|+++.+. .+ .+.+. . ...+|.+|+|++|++++ ++|+.+|
T Consensus 86 ~i~~~-l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~-------~~Rl~~r 151 (212)
T 2wwf_A 86 EIKSL-LLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYA-------QNRSDYG 151 (212)
T ss_dssp HHHHH-HHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGG-------GGSTTTT
T ss_pred HHHHH-HhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHH-------HHhhccC
Confidence 12111 1124579999998641 11 12222 1 13689999999999999 9998765
No 25
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.51 E-value=1.4e-14 Score=114.97 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=79.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH-HcCCCeeccchhHHhhcCCCch-----hHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSK-LLEVPHISMGSLVRQELSPRSA-----LYKQIANAVNEGKLVPEDVIFALLSKRLE 136 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~-~lg~~~Is~~dllr~~~~~~s~-----lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~ 136 (219)
+..|+|.|+|||||||+++.|++ .+++++++.+ .+++.....+. ....- .....+.+..++...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d-~~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~ 73 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEERDEYKYTKKK-------EGIVTGMQFDTAKSILY 73 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCCGGGCCCCHHH-------HHHHHHHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHH-HHHHHhhCCCccchhhhchhh-------hhHHHHHHHHHHHHHHh
Confidence 46799999999999999999999 6899999985 45555433211 11110 01112334444444442
Q ss_pred hccccCCCeEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 137 EGYYRGESGFILDGIPRTRIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 137 ~~~~~~~~g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
.. ..+.++|+||++.+..+.+.+... ..+..+|+|++|++++ ++|+.+|..
T Consensus 74 ~~--~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~-------~~R~~~R~~ 128 (181)
T 1ly1_A 74 GG--DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL-------VKRNSKRGT 128 (181)
T ss_dssp SC--SSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHH-------HHHHTTCGG
T ss_pred hc--cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHH-------HHHHhcccc
Confidence 21 235789999999987776655432 2345799999999999 999998864
No 26
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.48 E-value=1.6e-13 Score=115.50 Aligned_cols=122 Identities=15% Similarity=0.019 Sum_probs=85.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC--CCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHH-HHHHHHh
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL-LSKRLEE 137 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg--~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~L-l~~~l~~ 137 (219)
.+++.|+|+|+|||||||+++.|++.++ +.++.+ ..+.+++.++.+++++.++...++....-+ ...+.+.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~------~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~ 97 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREH 97 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee------cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999997 444433 235567899999999988875554433222 1233332
Q ss_pred cc------ccCCCeEEEe----------CccCCHHHH--HHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 138 GY------YRGESGFILD----------GIPRTRIQA--VSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 138 ~~------~~~~~g~IlD----------G~Pr~~~qa--~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
.. ...+..+|+| |+|++..+. +.+.. ...||++|+|++|++++ ++|+.+|.
T Consensus 98 ~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~-------~~R~~~R~ 170 (229)
T 4eaq_A 98 LVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVG-------RERIIKNS 170 (229)
T ss_dssp CCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHHHHHC-
T ss_pred HHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH-------HHHHHhcC
Confidence 10 1234678999 999876543 34433 24799999999999999 99999884
No 27
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.46 E-value=6e-13 Score=108.49 Aligned_cols=116 Identities=13% Similarity=0.048 Sum_probs=80.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
.++.|+|+|+|||||||+++.|++.+|.++++.+++..... ......|....+......+. .+.+.. .
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~-~l~~~~-~ 84 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLA-AIGERL-A 84 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHH-HHHHHH-T
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHH-HHHHHH-h
Confidence 45689999999999999999999999999999988653211 11122344444432222222 122111 2
Q ss_pred CCCeEEEeCccCCHHHHHHHHhhC-CCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 142 GESGFILDGIPRTRIQAVSLEFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
.+..+|+|+.+....+.+.+.... .++.+|+|++|++++ .+|+.+|..
T Consensus 85 ~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~-------~~Rl~~R~~ 133 (202)
T 3t61_A 85 SREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVL-------AERMHHRTG 133 (202)
T ss_dssp SSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHH-------HHHHHHHHS
T ss_pred cCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHH-------HHHHHHhhc
Confidence 356799998877777777776543 457999999999999 999988753
No 28
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.46 E-value=1.8e-13 Score=109.82 Aligned_cols=120 Identities=10% Similarity=0.112 Sum_probs=71.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~ 140 (219)
.+++.|+|+|+|||||||+++.|++++|+++++.|++...........+......+.. ..-+.+...+...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~---- 75 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQ---- 75 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHH----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHh----
Confidence 3568899999999999999999999999999998765432211000000000000000 000111122222222
Q ss_pred cCCCeEEEeCccCCHHHHHH---HHh-hCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 141 RGESGFILDGIPRTRIQAVS---LEF-CYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 141 ~~~~g~IlDG~Pr~~~qa~~---l~~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
.+.++|+|+++....+.+. +.. ...++.+|+|++|++++ ++|+.+|.
T Consensus 76 -~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~-------~~R~~~R~ 126 (193)
T 2rhm_A 76 -SGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVL-------VERILSRI 126 (193)
T ss_dssp -TTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHH-------HHHHHHHH
T ss_pred -CCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHH-------HHHHHHhc
Confidence 2467999998732222222 322 23578999999999999 99998775
No 29
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.46 E-value=8.6e-13 Score=106.22 Aligned_cols=117 Identities=17% Similarity=0.142 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHH------
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKR------ 134 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~------ 134 (219)
+.|+|+|+|||||||+++.|++.+ |++++.+.+ +.+++.++.+++.+.++...+.....-....+
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999 999997643 45678889999988866655542211111111
Q ss_pred HHhccccCCCeEEEe----------CccCCHH--HHHHHH----hhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 135 LEEGYYRGESGFILD----------GIPRTRI--QAVSLE----FCYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 135 l~~~~~~~~~g~IlD----------G~Pr~~~--qa~~l~----~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
+... ...+..+|+| |+++... ....+. ....||.+|+|++|++++ ++|+.+|
T Consensus 75 i~~~-l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~-------~~Rl~~R 142 (197)
T 2z0h_A 75 IKQY-LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETA-------LKRKGEL 142 (197)
T ss_dssp HTTC-----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHHC---
T ss_pred HHHH-HhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHH-------HHHHhcc
Confidence 2221 1234567888 4454432 222222 123699999999999999 9999988
No 30
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.44 E-value=1.7e-13 Score=109.65 Aligned_cols=119 Identities=18% Similarity=0.158 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhHHhhc-CCCchhHHHHHHHHHcCCcccH--HHHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPE--DVIFALLSKRL 135 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dllr~~~-~~~s~lg~~i~~~l~~g~~ip~--e~i~~Ll~~~l 135 (219)
+.|+|+|+|||||||+++.|+++++ +.+++.++++++.. ......+. + ..+...++ ......+..++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~i 76 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---D--EMRKLSVEKQKKLQIDAAKGI 76 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---H--HHTTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---h--hhhcCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999998 88998888887554 22111100 0 01222222 22222223333
Q ss_pred Hhccc-cCCCeEEEeCccCCHHH--------HHHHHhhCCCcEEEEEEeChhhhcccccchhhh-hhc--CC
Q 027791 136 EEGYY-RGESGFILDGIPRTRIQ--------AVSLEFCYTMALAFLFLFLYGCCVIIGSVILNE-QVD--GS 195 (219)
Q Consensus 136 ~~~~~-~~~~g~IlDG~Pr~~~q--------a~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~R-l~~--R~ 195 (219)
..... ..+..+|+||++....| .+.+... .|+.+|+|++|++++ ++| +.+ |.
T Consensus 77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~l~~~~~~~-------~~rr~~~~~R~ 140 (194)
T 1nks_A 77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI-NPSVIFLLEADPKII-------LSRQKRDTTRN 140 (194)
T ss_dssp HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHH-------HHHHHHCTTTC
T ss_pred HHHhhccCCCEEEECCchhhccccccccCCCHHHHHhc-CCCEEEEEeCCHHHH-------HHHHHhhcccC
Confidence 32110 13568999998543322 2333332 589999999999998 866 766 64
No 31
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.44 E-value=3.9e-13 Score=105.96 Aligned_cols=110 Identities=16% Similarity=0.210 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-CCcccHHHHHHHHHHHHHhccccC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
|+|+|+|+|||||||+++.|++++|+++++.|++.+... +..+.+.+.. |.....++...++ ..+. .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~l-~~l~-----~ 68 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE------GLSIPQIFEKKGEAYFRKLEFEVL-KDLS-----E 68 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHSCHHHHHHHHHHHH-HHHT-----T
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc------CCCHHHHHHHhChHHHHHHHHHHH-HHHh-----c
Confidence 579999999999999999999999999999999887653 1222333322 2211111112222 1222 1
Q ss_pred CCeEEEe-C--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 143 ESGFILD-G--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 143 ~~g~IlD-G--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
...+|++ | .+......+.+. .++.+|+|++|++++ ++|+.+|.
T Consensus 69 ~~~~Vi~~g~~~~~~~~~~~~l~---~~~~~i~l~~~~e~~-------~~R~~~r~ 114 (168)
T 2pt5_A 69 KENVVISTGGGLGANEEALNFMK---SRGTTVFIDIPFEVF-------LERCKDSK 114 (168)
T ss_dssp SSSEEEECCHHHHTCHHHHHHHH---TTSEEEEEECCHHHH-------HHHCBCTT
T ss_pred cCCeEEECCCCEeCCHHHHHHHH---cCCEEEEEECCHHHH-------HHHHhCCC
Confidence 3456665 4 233334444443 368999999999999 99998874
No 32
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.43 E-value=3.2e-14 Score=113.86 Aligned_cols=114 Identities=18% Similarity=0.107 Sum_probs=71.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhHHhhcCC-Cc--hhHHHHHHHHHcCCccc--HHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSP-RS--ALYKQIANAVNEGKLVP--EDVIFALLS 132 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dllr~~~~~-~s--~lg~~i~~~l~~g~~ip--~e~i~~Ll~ 132 (219)
++.|+|+|+|||||||+++.|+++++ ++++++++++++.... +. +.. . -....+ ...+...+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~ 75 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRD-Q------MRKMDPETQKRIQKMAG 75 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGG-G------GSSCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHH-H------HhcCCHHHHHHHHHHHH
Confidence 46899999999999999999999998 9999999988765321 10 000 0 001101 122222333
Q ss_pred HHHHhccccCCCeEEEeCccCCHHHH--------HHHHhhCCCcEEEEEEeChhhhcccccchhh-hhhc
Q 027791 133 KRLEEGYYRGESGFILDGIPRTRIQA--------VSLEFCYTMALAFLFLFLYGCCVIIGSVILN-EQVD 193 (219)
Q Consensus 133 ~~l~~~~~~~~~g~IlDG~Pr~~~qa--------~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~-Rl~~ 193 (219)
+.+... ..+..+|+||++....+. ..+... .+|++|+|++|++++ ++ |+.+
T Consensus 76 ~~i~~~--~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~-------~~rRl~~ 135 (192)
T 1kht_A 76 RKIAEM--AKESPVAVDTHSTVSTPKGYLPGLPSWVLNEL-NPDLIIVVETTGDEI-------LMRRMSD 135 (192)
T ss_dssp HHHHHH--HTTSCEEEECCSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHH-------HHHHHTS
T ss_pred HHHHhh--ccCCeEEEccceeccccccccccCcHHHHhcc-CCCEEEEEeCCHHHH-------HHHHhhh
Confidence 333321 124579999976421111 222222 478999999999999 96 8977
No 33
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.40 E-value=1.5e-12 Score=105.48 Aligned_cols=112 Identities=15% Similarity=0.069 Sum_probs=74.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc-CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHH--HH----
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS--KR---- 134 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l-g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~--~~---- 134 (219)
+++.|+|+|+|||||||+++.|++++ |++++++++. ...++.++.+++++.++..+++... .++. .+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~-----~~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~ 76 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP-----QRSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFA 76 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS-----CTTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC-----CCCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHH
Confidence 56889999999999999999999999 6888876431 1245678888888877655554322 2221 11
Q ss_pred --HHhccccCCCeEEEeCccCCHH--H------HHHH---Hh-hCCCcEEEEEEeChhhh
Q 027791 135 --LEEGYYRGESGFILDGIPRTRI--Q------AVSL---EF-CYTMALAFLFLFLYGCC 180 (219)
Q Consensus 135 --l~~~~~~~~~g~IlDG~Pr~~~--q------a~~l---~~-~~~pd~VI~L~~~~e~l 180 (219)
+... ...+..+|+|+||.+.. + .+.+ .. ...||.+|+|++|++++
T Consensus 77 ~~i~~~-l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~ 135 (204)
T 2v54_A 77 SFIQEQ-LEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEI 135 (204)
T ss_dssp HHHHHH-HHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHH
T ss_pred HHHHHH-HHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHH
Confidence 1111 11245789999986431 1 1222 21 13689999999999999
No 34
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.40 E-value=1.7e-13 Score=118.09 Aligned_cols=123 Identities=13% Similarity=0.061 Sum_probs=78.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc-CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l-g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
+..|+|.|+|||||||+++.|++++ |+++|+.| .+++.+...++ +.. .++...++....+.+..++...+... .
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 76 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGG--D 76 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSC--T
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhc--c
Confidence 3679999999999999999999985 99999998 45655432111 000 00000000111223333333333110 2
Q ss_pred CCCeEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791 142 GESGFILDGIPRTRIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC 197 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~ 197 (219)
.+.++|+||++.+..+.+.+.+. ..++.+|+|++|++++ ++|+.+|..+
T Consensus 77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~-------~~R~~~R~~~ 129 (301)
T 1ltq_A 77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL-------VKRNSKRGTK 129 (301)
T ss_dssp TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHH-------HHHHHHCGGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHH-------HHHHHhccCC
Confidence 35689999999887776666432 2355899999999999 9999998753
No 35
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=5.1e-13 Score=109.09 Aligned_cols=109 Identities=13% Similarity=0.167 Sum_probs=73.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-CCcccHHHHHHHHHHHHHhccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYY 140 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-g~~ip~e~i~~Ll~~~l~~~~~ 140 (219)
++..|+|+|+|||||||+++.|++++|+++++.++++..... .+ +.+.+.+ |.....+....++.. +.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g--~~----i~~~~~~~~~~~~~~~e~~~l~~-l~---- 92 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH--KT----VGELFTERGEAGFRELERNMLHE-VA---- 92 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SC----HHHHHHHHHHHHHHHHHHHHHHH-HT----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC--Cc----HHHHHHhcChHHHHHHHHHHHHH-Hh----
Confidence 456899999999999999999999999999999998876432 11 2222211 111111122222221 11
Q ss_pred cCCCeEEEe---CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhh
Q 027791 141 RGESGFILD---GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQV 192 (219)
Q Consensus 141 ~~~~g~IlD---G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~ 192 (219)
...++|++ |.+......+.+.. ++.+|+|++|++++ .+|+.
T Consensus 93 -~~~~~vi~~ggg~~~~~~~~~~l~~---~~~vi~L~~~~e~l-------~~Rl~ 136 (199)
T 3vaa_A 93 -EFENVVISTGGGAPCFYDNMEFMNR---TGKTVFLNVHPDVL-------FRRLR 136 (199)
T ss_dssp -TCSSEEEECCTTGGGSTTHHHHHHH---HSEEEEEECCHHHH-------HHHHH
T ss_pred -hcCCcEEECCCcEEccHHHHHHHHc---CCEEEEEECCHHHH-------HHHHh
Confidence 23567888 56665555555544 68999999999999 99998
No 36
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.39 E-value=4.2e-12 Score=107.29 Aligned_cols=122 Identities=15% Similarity=0.071 Sum_probs=79.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc-------CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-------EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSK 133 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l-------g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~ 133 (219)
.+++.|+|.|++||||||+++.|++.+ |+.++ +.++ +.++++|+.+++++.++...+.....-+..+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~----~~re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~ 96 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVV----VTRE--PGGTRLGETLREILLNQPMDLETEALLMFAG 96 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEE----EEES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeee----eecC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467899999999999999999999998 44443 2343 3678999999999988864443322222223
Q ss_pred HHHhc------cccCCCeEEEeCccCC------------HHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhh
Q 027791 134 RLEEG------YYRGESGFILDGIPRT------------RIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQ 191 (219)
Q Consensus 134 ~l~~~------~~~~~~g~IlDG~Pr~------------~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl 191 (219)
+.+.. ....+..+|+|.|..+ .+....++. ...||++|+|++|++++ ++|+
T Consensus 97 R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~-------~~Ri 169 (227)
T 3v9p_A 97 RREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIA-------SARR 169 (227)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCG-------GGTT
T ss_pred HHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH-------HHHH
Confidence 32211 0123456888976533 222233332 24799999999999999 9999
Q ss_pred hcCC
Q 027791 192 VDGS 195 (219)
Q Consensus 192 ~~R~ 195 (219)
.+|.
T Consensus 170 ~~R~ 173 (227)
T 3v9p_A 170 GAVR 173 (227)
T ss_dssp TCCC
T ss_pred Hhcc
Confidence 9885
No 37
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.38 E-value=1.1e-12 Score=105.20 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=69.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHH-HcCCcccHHHHHHHHHHHHHhccccC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-NEGKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l-~~g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
++|+|+|+|||||||+++.|++++|+++++.|+++++... .+. .+.+ ..|.....+....++...+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g--~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~----- 71 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG--RSI----ADIFATDGEQEFRRIEEDVVRAALAD----- 71 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS--SCH----HHHHHHHCHHHHHHHHHHHHHHHHHH-----
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC--CCH----HHHHHHhChHHHHHHHHHHHHHHHhc-----
Confidence 5699999999999999999999999999999998887542 111 1222 123322333333333332221
Q ss_pred CCeEEEeC--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 143 ESGFILDG--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 143 ~~g~IlDG--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
...+|.+| +.......+.+. .+.+|+|++|++++ .+|+.+|.
T Consensus 72 ~~~vi~~g~~~v~~~~~~~~l~----~~~vV~L~~~~e~~-------~~Rl~~r~ 115 (184)
T 2iyv_A 72 HDGVLSLGGGAVTSPGVRAALA----GHTVVYLEISAAEG-------VRRTGGNT 115 (184)
T ss_dssp CCSEEECCTTGGGSHHHHHHHT----TSCEEEEECCHHHH-------HHHTTCCC
T ss_pred CCeEEecCCcEEcCHHHHHHHc----CCeEEEEeCCHHHH-------HHHHhCCC
Confidence 12233344 222222223332 56899999999999 99998875
No 38
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.38 E-value=7.3e-13 Score=108.05 Aligned_cols=124 Identities=16% Similarity=0.125 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHH-------H
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS-------K 133 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~-------~ 133 (219)
.+++.|+|+|+|||||||+++.|+++++..++++. .+++. ..+++.++.+++++.++..++++....+.. .
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~-~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 84 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE-LLRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP 84 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE-EeeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999877777663 33332 124677888888887766666543322111 0
Q ss_pred HHHhccccCCCeEEEeCcc-----CC-------HHHHHHHHh-hCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 134 RLEEGYYRGESGFILDGIP-----RT-------RIQAVSLEF-CYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 134 ~l~~~~~~~~~g~IlDG~P-----r~-------~~qa~~l~~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
.+... ...+..+|+|.+. +. .+....+.. ...+|.+|+|++|++++ .+|+.+|
T Consensus 85 ~i~~~-l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~-------~~Rl~r~ 150 (215)
T 1nn5_A 85 LIKEK-LSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADA-------AKRGAFG 150 (215)
T ss_dssp HHHHH-HHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHH-------HHC----
T ss_pred HHHHH-HHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHH-------HHHhccC
Confidence 11111 1134578889432 21 121222221 13589999999999999 9999643
No 39
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.38 E-value=6.4e-13 Score=105.15 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYY 140 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~~~ 140 (219)
.+..|+|+|+|||||||+++.|++++|++++++|+++++... . .+.+.+. .|.....+....++.. +.+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g--~----~~~~~~~~~g~~~~~~~~~~~l~~-~~~--- 75 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG--L----SVREIFEELGEDNFRMFEKNLIDE-LKT--- 75 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT--S----CHHHHHHHTCHHHHHHHHHHHHHH-HHT---
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC--C----CHHHHHHHhCHHHHHHHHHHHHHH-HHh---
Confidence 456889999999999999999999999999999998887542 1 1233332 2332222222233332 221
Q ss_pred cCCCeE-EEe-C--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 141 RGESGF-ILD-G--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 141 ~~~~g~-IlD-G--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
...+ |++ | ++.. +. + ..++.+|+|++|++++ ++|+.+|
T Consensus 76 --~~~~~Vi~~g~g~~~~-~~---l---~~~~~vi~l~~~~e~~-------~~Rl~~r 117 (168)
T 1zuh_A 76 --LKTPHVISTGGGIVMH-EN---L---KGLGTTFYLKMDFETL-------IKRLNQK 117 (168)
T ss_dssp --CSSCCEEECCGGGGGC-GG---G---TTSEEEEEEECCHHHH-------HHHHCC-
T ss_pred --cCCCEEEECCCCEech-hH---H---hcCCEEEEEECCHHHH-------HHHHhcc
Confidence 1233 444 3 4433 21 2 2478999999999999 9999887
No 40
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.38 E-value=1.1e-12 Score=108.08 Aligned_cols=122 Identities=15% Similarity=0.166 Sum_probs=75.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-----CCcccHH-----------
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-----GKLVPED----------- 125 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-----g~~ip~e----------- 125 (219)
+++.|+|+|++||||||+++.|++ +|+++++.|++.++...++.+....+.+.+.. ...+...
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 468899999999999999999998 99999999999988765544444454443311 1112211
Q ss_pred -------HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 126 -------VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 126 -------~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
++...+.+.+.........++++.+.|...+.. +. ..+|.+|+|++|++++ ++|+.+|.
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~~~l~~~~--~~--~~~d~vi~l~~~~e~~-------~~Rl~~R~ 147 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENS--LY--KKANRVLVVDVSPETQ-------LKRTMQRD 147 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECTTTTTTT--GG--GGCSEEEEEECCHHHH-------HHHHHHHH
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEeeeeeccC--cc--ccCCEEEEEECCHHHH-------HHHHHHcC
Confidence 112222211111000101234444445443322 22 2478999999999999 99998773
No 41
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.37 E-value=9.6e-12 Score=103.21 Aligned_cols=121 Identities=14% Similarity=0.034 Sum_probs=80.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc--CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHH-HHHHHhc-
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL-SKRLEEG- 138 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l--g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll-~~~l~~~- 138 (219)
+..|+|.|++|||||||++.|++.+ |.+++.+ ++ +.+++.++.+++.+.++..++.....-+. .+|.++.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~----~e--P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~ 75 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT----RE--PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV 75 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE----ES--STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe----eC--CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999988 5565533 22 46789999999999888777665432221 1121110
Q ss_pred -----cccCCCeEEEeCccC----------C--HHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 139 -----YYRGESGFILDGIPR----------T--RIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 139 -----~~~~~~g~IlDG~Pr----------~--~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
....+.-+|.|.|.. . .+....+.. ...||++|+|++|++++ ++|+.+|..
T Consensus 76 ~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~-------~~Ri~~r~~ 147 (205)
T 4hlc_A 76 LKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVG-------RERIIKNSR 147 (205)
T ss_dssp HTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHHHHC---
T ss_pred HHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHH-------HHHHHhcCC
Confidence 012245577786542 1 222233332 24799999999999999 999988854
No 42
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.37 E-value=8.1e-13 Score=106.71 Aligned_cols=111 Identities=12% Similarity=0.229 Sum_probs=73.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH-cCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcc---cHHHHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL-LEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV---PEDVIFALLSKRLE 136 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~-lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~i---p~e~i~~Ll~~~l~ 136 (219)
.+++.|+|+|+|||||||+++.|+++ +|++++++|+++++... ....++. ... ..+ +++.....+...+.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~-~~~~~~~----~~~-~~~~r~~~~~~~~~l~~~~~ 81 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHF-YTEYDTE----LDT-HIIEEKDEDRLLDFMEPIMV 81 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTC-SCC----------C-CCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhh-hhhHHHH----hhh-cccCCCCHHHHHHHHHHHHh
Confidence 35678999999999999999999999 79999999999987511 1112221 111 122 33333333343332
Q ss_pred hccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 137 EGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 137 ~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
. ..++|+|+.... .+.. ..++.||+|++|++++ ++|+.+|.
T Consensus 82 ~-----~g~~vi~~~~~~-----~~~~-~~~~~vi~l~~~~e~~-------~~Rl~~R~ 122 (184)
T 1y63_A 82 S-----RGNHVVDYHSSE-----LFPE-RWFHMVVVLHTSTEVL-------FERLTKRQ 122 (184)
T ss_dssp S-----SSEEEEECSCCT-----TSCG-GGCSEEEEEECCHHHH-------HHHHHHTT
T ss_pred c-----cCCEEEeCchHh-----hhhh-ccCCEEEEEECCHHHH-------HHHHHhCC
Confidence 1 347888876321 1211 1367999999999999 99999885
No 43
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.37 E-value=1.6e-12 Score=105.45 Aligned_cols=115 Identities=17% Similarity=0.068 Sum_probs=70.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCC--eeccchhHHhhcCCCchhHHHHHHHHHcCCc---ccHHHHHHHH--HHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKL---VPEDVIFALL--SKR 134 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~--~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~---ip~e~i~~Ll--~~~ 134 (219)
+++.|+|+|+|||||||+++.|+++++.. ++...+ +.++.+++++.++.. .+... ..++ ..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~r 71 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEW----------NSSDWIHDIIKEAKKKDLLTPLT-FSLIHATDF 71 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEET----------TCCCHHHHHHHHHTTTSCCCHHH-HHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecC----------CcHHHHHHHHhccccccCCCHHH-HHHHHHHHH
Confidence 35789999999999999999999999874 443211 123344444443321 22211 1111 111
Q ss_pred H-------HhccccCCCeEEEeCccCCHH--H---------HHHHHh-hCCCcEEEEEEeChhhhcccccchhhhhh-cC
Q 027791 135 L-------EEGYYRGESGFILDGIPRTRI--Q---------AVSLEF-CYTMALAFLFLFLYGCCVIIGSVILNEQV-DG 194 (219)
Q Consensus 135 l-------~~~~~~~~~g~IlDG~Pr~~~--q---------a~~l~~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~-~R 194 (219)
. ... ...+..+|+|++|.+.. | .+.+.. ...+|.+|+|++|++++ .+|+. +|
T Consensus 72 ~~~~~~~i~~~-l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~-------~~Rl~~~R 143 (213)
T 2plr_A 72 SDRYERYILPM-LKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIA-------LERIKKSK 143 (213)
T ss_dssp HHHHHHTHHHH-HHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHH-------HHHHHHTT
T ss_pred HHHHHHHHHHH-HhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHH-------HHHHhccc
Confidence 1 111 12346789999987531 1 222322 23589999999999999 99998 77
Q ss_pred C
Q 027791 195 S 195 (219)
Q Consensus 195 ~ 195 (219)
.
T Consensus 144 ~ 144 (213)
T 2plr_A 144 R 144 (213)
T ss_dssp C
T ss_pred c
Confidence 5
No 44
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.36 E-value=4e-12 Score=103.71 Aligned_cols=119 Identities=14% Similarity=0.139 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCc-----cc---------------
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VP--------------- 123 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~-----ip--------------- 123 (219)
+.|.|+|++||||||+++.|++ +|+++++.|++.++...++.+....+.+.+..... +.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 5789999999999999999987 99999999999887655444333333322211100 00
Q ss_pred ---HHHHHHHHHHHHHhccc-cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 124 ---EDVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 124 ---~e~i~~Ll~~~l~~~~~-~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+.+....+...+.+... ..+.++|+|+ |...+. . +.. ..|.+|+|++|++++ .+|+.+|.
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~-~~l~e~-~-~~~--~~d~vi~l~~~~e~~-------~~Rl~~R~ 145 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVV-PLLIEN-K-LTA--LCDRILVVDVSPQTQ-------LARSAQRD 145 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSEEEEEC-TTTTTT-T-CGG--GCSEEEEEECCHHHH-------HHHHC---
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCEEEEEe-chhhhc-C-cHh--hCCEEEEEECCHHHH-------HHHHHHcC
Confidence 11222222222221110 1245788897 432221 1 222 368999999999999 99999884
No 45
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.36 E-value=2.1e-11 Score=101.83 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=81.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCC--cccHHHHH-HHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGK--LVPEDVIF-ALLSKRL 135 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~--~ip~e~i~-~Ll~~~l 135 (219)
+++.|+|.|++||||||+++.|++.+ |++++.+ ++ +.++++|+.+++++.++. .+++.... -...++.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~----~~--p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~ 78 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT----RE--PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARA 78 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE----ES--SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc----cC--CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999988 4555533 33 357899999999998774 34443221 1112222
Q ss_pred Hhc------cccCCCeEEEeCccC------------CHHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791 136 EEG------YYRGESGFILDGIPR------------TRIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVD 193 (219)
Q Consensus 136 ~~~------~~~~~~g~IlDG~Pr------------~~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~ 193 (219)
++. ....+..+|.|-|.. ..+....++. ...||++|+|++|++++ ++|+.+
T Consensus 79 ~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~-------~~Ri~~ 151 (213)
T 4edh_A 79 QHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIG-------LARAAA 151 (213)
T ss_dssp HHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHHHCC
T ss_pred HHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH-------HHHHHh
Confidence 211 012345688895532 1233333332 25799999999999999 999998
Q ss_pred CC
Q 027791 194 GS 195 (219)
Q Consensus 194 R~ 195 (219)
|.
T Consensus 152 R~ 153 (213)
T 4edh_A 152 RG 153 (213)
T ss_dssp CS
T ss_pred cC
Confidence 84
No 46
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.34 E-value=9.3e-12 Score=99.12 Aligned_cols=113 Identities=13% Similarity=0.019 Sum_probs=65.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcc----c--HHHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV----P--EDVIFALLSKRL 135 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~i----p--~e~i~~Ll~~~l 135 (219)
+++.|+|+|+|||||||+++.|+++++.+++... ...+..+++.+.+|... . .+.+...+...+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~----------~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~l 73 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEP----------EEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYAS 73 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCT----------HHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEch----------hhhHHHHHHhCccccchhhhhHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999998311 12233333333222110 0 123344444444
Q ss_pred HhccccCCCeEEEeCccCCHHHH----HHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 136 EEGYYRGESGFILDGIPRTRIQA----VSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 136 ~~~~~~~~~g~IlDG~Pr~~~qa----~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
.. .+..+|+|+........ +.+.....+..+|+|++|++++ ++|+.+|.
T Consensus 74 ~~----~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~-------~~R~~~R~ 126 (183)
T 2vli_A 74 RE----AAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVV-------LERLRRDG 126 (183)
T ss_dssp HH----CSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHH-------HHHHHTC-
T ss_pred Hh----CCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHH-------HHHHHhcc
Confidence 32 23457889765554332 2233222233569999999999 99999885
No 47
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.34 E-value=7.6e-12 Score=98.78 Aligned_cols=109 Identities=8% Similarity=0.003 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
+.|+|+|+|||||||+++.|++++|+++++.|+++++.. +.+..+.+.+ .|.....++...++. .+. .
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~--g~~~~~~~~~---~~~~~~~~~~~~~~~-~l~------~ 70 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTVADVVAA---EGWPGFRRRESEALQ-AVA------T 70 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCHHHHHHH---HHHHHHHHHHHHHHH-HHC------C
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh--CCCHHHHHHH---cCHHHHHHHHHHHHH-Hhh------c
Confidence 479999999999999999999999999999999887652 2222211110 111111111112211 121 2
Q ss_pred CeEEEe-C--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhh--cC
Q 027791 144 SGFILD-G--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQV--DG 194 (219)
Q Consensus 144 ~g~IlD-G--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~--~R 194 (219)
.++|++ | .+......+.+.. ++.+|+|++|++++ .+|+. +|
T Consensus 71 ~~~vi~~g~~~~~~~~~~~~l~~---~~~~i~l~~~~e~~-------~~R~~~~~r 116 (173)
T 1e6c_A 71 PNRVVATGGGMVLLEQNRQFMRA---HGTVVYLFAPAEEL-------ALRLQASLQ 116 (173)
T ss_dssp SSEEEECCTTGGGSHHHHHHHHH---HSEEEEEECCHHHH-------HHHHHHHHC
T ss_pred CCeEEECCCcEEeCHHHHHHHHc---CCeEEEEECCHHHH-------HHHHhhccC
Confidence 345664 5 3334444444443 58999999999999 99998 77
No 48
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.32 E-value=1.6e-11 Score=104.58 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=74.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH---cCCCee--ccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL---LEVPHI--SMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE 136 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~---lg~~~I--s~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~ 136 (219)
+++.|+|+|+|||||||+++.|++. +|++++ +.|+ +++.+....+.++. .........+...+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~-~~~~l~~~~~~~e~----------~~~~~~~~~i~~~l- 70 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL-IRESFPVWKEKYEE----------FIKKSTYRLIDSAL- 70 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH-HHTTSSSCCGGGHH----------HHHHHHHHHHHHHH-
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH-HHHHHhhhhHHHHH----------HHHHHHHHHHHHHh-
Confidence 5688999999999999999999998 789888 6654 45443321111111 01111222233322
Q ss_pred hccccCCCeEEEeCccCCHHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 137 EGYYRGESGFILDGIPRTRIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 137 ~~~~~~~~g~IlDG~Pr~~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
.. ..+|+|+.+....+.+.+.. ...++.+|+|++|++++ ++|+.+|.
T Consensus 71 ----~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~-------~~R~~~R~ 121 (260)
T 3a4m_A 71 ----KN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVL-------IRRNIERG 121 (260)
T ss_dssp ----TT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHH-------HHHHHHTT
T ss_pred ----hC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHH-------HHHHHhCC
Confidence 12 68999998777665555543 24578999999999999 99998875
No 49
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.30 E-value=8.7e-12 Score=100.71 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=73.6
Q ss_pred CCCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc---CCcccHHHH-------
Q 027791 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE---GKLVPEDVI------- 127 (219)
Q Consensus 58 ~~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~---g~~ip~e~i------- 127 (219)
+.+.+++.|.|+|++||||||+++.|++. |+++++.|+++++.. .+.+ ..+.+.++. ...+....+
T Consensus 3 ~~~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~ 78 (203)
T 1uf9_A 3 HEAKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSD 78 (203)
T ss_dssp ---CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTS
T ss_pred CcccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCC
Confidence 44567889999999999999999999998 999999999887764 2222 222222210 111222211
Q ss_pred -----------HHHH-HHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 128 -----------FALL-SKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 128 -----------~~Ll-~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
..++ .+.+......+...+|+|+ |..... .+. ..+|.+|+|+++++++ .+|+.+|.
T Consensus 79 ~~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~~--~~~--~~~d~~i~l~~~~e~~-------~~R~~~R~ 146 (203)
T 1uf9_A 79 PERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFEK--GWE--GRLHGTLLVAAPLEER-------VRRVMARS 146 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTTT--TCG--GGSSEEEEECCCHHHH-------HHHHHTTT
T ss_pred HHHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceecc--Cch--hhCCEEEEEECCHHHH-------HHHHHHcC
Confidence 1111 1222221112346788886 322111 011 1368999999999999 99998873
No 50
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.29 E-value=2.6e-12 Score=102.74 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=72.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
++..|+|+|+|||||||+++.|++++|++++++++++++.... ...+.. .......++.+...+...+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---- 79 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLY-DGYDEE-----YDCPILDEDRVVDELDNQMRE---- 79 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCE-EEEETT-----TTEEEECHHHHHHHHHHHHHH----
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchh-hhhhhh-----hcCccCChHHHHHHHHHHHhc----
Confidence 4567899999999999999999999999999999988765110 000000 001112333344444444433
Q ss_pred CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 142 GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 142 ~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
.++|+|+..... +.. ..++.+|+|++|++++ .+|+.+|..
T Consensus 80 --g~~vv~~~~~~~-----~~~-~~~~~vi~L~~~~e~l-------~~R~~~r~~ 119 (180)
T 3iij_A 80 --GGVIVDYHGCDF-----FPE-RWFHIVFVLRTDTNVL-------YERLETRGY 119 (180)
T ss_dssp --CCEEEECSCCTT-----SCG-GGCSEEEEEECCHHHH-------HHHHHHTTC
T ss_pred --CCEEEEechhhh-----cch-hcCCEEEEEECCHHHH-------HHHHHHcCC
Confidence 367888654321 111 1278999999999999 999998853
No 51
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.29 E-value=1.1e-11 Score=107.26 Aligned_cols=123 Identities=15% Similarity=0.195 Sum_probs=78.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-----CCcccH----------
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-----GKLVPE---------- 124 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-----g~~ip~---------- 124 (219)
+.+++.|+|+|+|||||||+++.|+ ++|+++|++|++.++...++.+....+.+.+.. ...+..
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 4567899999999999999999999 699999999999888776655544444332211 001111
Q ss_pred --------HHHHHHH----HHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhh
Q 027791 125 --------DVIFALL----SKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQV 192 (219)
Q Consensus 125 --------e~i~~Ll----~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~ 192 (219)
+++...+ .+++......+...+|+||..... .. +. ..+|.+|+|++|++++ ++|+.
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~--~~-~~--~~~d~vI~l~a~~ev~-------~~Rl~ 218 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLE--AG-WQ--SMVHEVWTVVIPETEA-------VRRIV 218 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTT--TT-GG--GGCSEEEEEECCHHHH-------HHHHH
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhc--cc-hH--HhCCEEEEEcCCHHHH-------HHHHH
Confidence 1111111 122221111124579999963221 11 11 1368999999999999 99998
Q ss_pred cCC
Q 027791 193 DGS 195 (219)
Q Consensus 193 ~R~ 195 (219)
+|.
T Consensus 219 ~R~ 221 (281)
T 2f6r_A 219 ERD 221 (281)
T ss_dssp HHH
T ss_pred HcC
Confidence 873
No 52
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.29 E-value=3.8e-11 Score=97.94 Aligned_cols=115 Identities=10% Similarity=0.019 Sum_probs=75.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHH-------HHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED-------VIFALLSK 133 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e-------~i~~Ll~~ 133 (219)
.++..|+|+|++||||||+++.|+..+|..+++.+++.... .. .....|....+. .+..++..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~---------~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPE---------NI-ATMQRGIPLTDEDRWPWLRSLAEWMDA 96 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHH---------HH-HHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHH---------HH-HHHhcCCCCCCcccccHHHHHHHHHHH
Confidence 35678999999999999999999999999999987764211 00 011122222221 11222222
Q ss_pred HHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791 134 RLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC 197 (219)
Q Consensus 134 ~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~ 197 (219)
.+. ....+|+|.......+.+.+.+...+..+|+|++|++++ .+|+.+|...
T Consensus 97 ~~~-----~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l-------~~Rl~~R~~~ 148 (200)
T 4eun_A 97 RAD-----AGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVI-------KGRMSKREGH 148 (200)
T ss_dssp HHH-----TTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHH-------HHHHTTCSCC
T ss_pred HHh-----cCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHH-------HHHHHhcccC
Confidence 222 234678886555555566666555566899999999999 9999988643
No 53
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.28 E-value=6.3e-12 Score=102.24 Aligned_cols=116 Identities=14% Similarity=0.185 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcC-----CcccH--------------
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPE-------------- 124 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g-----~~ip~-------------- 124 (219)
++|.|+|++||||||+++.|++ +|++++++|+++++....+......+.+..... ..+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999999 999999999999877654444334443332111 01111
Q ss_pred ----HHHHHHH----HHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 125 ----DVIFALL----SKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 125 ----e~i~~Ll----~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
.+....+ .+.+... .+...+|+||.-..... +.. .+|.+|+|++|++++ ++|+.+|
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~--~~~~~vive~~~l~~~~---~~~--~~~~~i~l~~~~e~~-------~~Rl~~R 144 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNL--SEDTLFILEASLLVEKG---TYK--NYDKLIVVYAPYEVC-------KERAIKR 144 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHS--CTTCCEEEECSCSTTTT---CGG--GSSEEEEECCCHHHH-------HHHHHHT
T ss_pred HHHHHhhCHHHHHHHHHHHHhc--cCCCEEEEEccccccCC---chh--hCCEEEEEECCHHHH-------HHHHHHc
Confidence 1111111 1112211 11257889984221111 111 378999999999999 9999887
No 54
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.27 E-value=2.1e-11 Score=95.75 Aligned_cols=98 Identities=19% Similarity=0.051 Sum_probs=64.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~ 143 (219)
+.|+|+|+|||||||+++.|++++++++++.+++...... . ...+ ... ..+. .+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~----~----~~~~------------~~~-~~l~-----~~ 55 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG----N----EKLF------------EHF-NKLA-----DE 55 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTC----H----HHHH------------HHH-HHHT-----TC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhH----H----HHHH------------HHH-HHHH-----hC
Confidence 4789999999999999999999999999999876654320 0 0000 100 1111 12
Q ss_pred CeEEEeCcc---------------CCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 144 SGFILDGIP---------------RTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 144 ~g~IlDG~P---------------r~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
..+|.|-+. ....+...+... ..|+.+|+|++|++++ .+|+.+|
T Consensus 56 ~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~-------~~R~~~r 115 (173)
T 3kb2_A 56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVI-------KKRLRVR 115 (173)
T ss_dssp CSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHH-------HHHHHHH
T ss_pred CCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHH-------HHHHHhc
Confidence 345555221 122333444332 4689999999999999 9999886
No 55
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.27 E-value=2.1e-11 Score=103.47 Aligned_cols=125 Identities=14% Similarity=0.043 Sum_probs=77.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcC---CcccHHHHHH-HHHHHHHh
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG---KLVPEDVIFA-LLSKRLEE 137 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g---~~ip~e~i~~-Ll~~~l~~ 137 (219)
++..|+|.|++||||||+++.|++.+....++...+.++ +.++++++.+++++..+ ..+++....- +...+.+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~ 103 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL 103 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence 567999999999999999999999986555553344554 36789999999998632 2344332211 11112111
Q ss_pred c------cccCCCeEEEeCcc----------CC--HHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 138 G------YYRGESGFILDGIP----------RT--RIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 138 ~------~~~~~~g~IlDG~P----------r~--~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
. ....+..+|.|-|. +. .+....++. ...||++|+|++|++++ ++|+.+|.
T Consensus 104 ~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~-------~~Ri~~R~ 176 (236)
T 3lv8_A 104 VENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLG-------LERARGRG 176 (236)
T ss_dssp HHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHC-----
T ss_pred HHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH-------HHHHHhcC
Confidence 1 01234568889543 21 222233322 24799999999999999 99999885
No 56
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.27 E-value=1.3e-10 Score=92.22 Aligned_cols=110 Identities=11% Similarity=0.033 Sum_probs=70.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHH-------HHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED-------VIFALLSKR 134 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e-------~i~~Ll~~~ 134 (219)
++..|+|+|+|||||||+++.|++.+|.++++.+++.+.. .+.. ...|..+.+. .+..++...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEK-MASGEPLNDDDRKPWLQALNDAAFAM 76 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHH-HHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHH-hhcCcCCCccccccHHHHHHHHHHHH
Confidence 4678999999999999999999999999999988764320 0100 0112222211 112222222
Q ss_pred HHhccccCCCeEEEe-CccCCHHHHHHHHhhCCCc-EEEEEEeChhhhcccccchhhhhhcCC
Q 027791 135 LEEGYYRGESGFILD-GIPRTRIQAVSLEFCYTMA-LAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 135 l~~~~~~~~~g~IlD-G~Pr~~~qa~~l~~~~~pd-~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+. .+..+|+| |++ ...+.+.+... .++ .+|+|++|++++ ++|+.+|.
T Consensus 77 ~~-----~~~~~vi~~~~~-~~~~~~~l~~~-~~~~~vv~l~~~~e~~-------~~R~~~R~ 125 (175)
T 1knq_A 77 QR-----TNKVSLIVCSAL-KKHYRDLLREG-NPNLSFIYLKGDFDVI-------ESRLKARK 125 (175)
T ss_dssp HH-----HCSEEEEECCCC-SHHHHHHHHTT-CTTEEEEEEECCHHHH-------HHHHHTST
T ss_pred Hh-----cCCcEEEEeCch-HHHHHHHHHhc-CCCEEEEEEECCHHHH-------HHHHHhcc
Confidence 21 13578888 554 33444555543 245 799999999999 99999885
No 57
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.27 E-value=2.4e-11 Score=97.14 Aligned_cols=108 Identities=11% Similarity=0.031 Sum_probs=69.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-CCcccHHHHHHHHHHHHHhcccc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
+..|+|+|+|||||||+++.|++++|+++++.|+++++... .+.. +.+.. |+....+....++.. +..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g--~~~~----~~~~~~g~~~~~~~~~~~~~~-~~~---- 73 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG--ADIA----WIFEMEGEAGFRRREREMIEA-LCK---- 73 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT--SCHH----HHHHHHHHHHHHHHHHHHHHH-HHH----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CChh----hHHHHhCHHHHHHHHHHHHHH-HHh----
Confidence 45799999999999999999999999999999998776432 1111 11111 111111222233332 222
Q ss_pred CCCeEEEeC--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhh
Q 027791 142 GESGFILDG--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQ 191 (219)
Q Consensus 142 ~~~g~IlDG--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl 191 (219)
....+|..| .+......+.+... +.+|+|++|++++ .+|+
T Consensus 74 ~~~~vi~~gg~~~~~~~~~~~l~~~---~~vi~L~~~~e~l-------~~Rl 115 (185)
T 3trf_A 74 LDNIILATGGGVVLDEKNRQQISET---GVVIYLTASIDTQ-------LKRI 115 (185)
T ss_dssp SSSCEEECCTTGGGSHHHHHHHHHH---EEEEEEECCHHHH-------HHHH
T ss_pred cCCcEEecCCceecCHHHHHHHHhC---CcEEEEECCHHHH-------HHHH
Confidence 123344444 45555555555542 5899999999999 9999
No 58
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.27 E-value=2.3e-11 Score=101.60 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=78.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcC-----CcccHHHHH--------
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPEDVIF-------- 128 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g-----~~ip~e~i~-------- 128 (219)
+++.|+|.|++||||||+++.|++.+.-..++...+.++ +.++++|+.+++++... ..+.+....
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~ 79 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTRE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARV 79 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHH
Confidence 367899999999999999999999883332211123343 46789999999998732 334443211
Q ss_pred ----HHHHHHHHhccccCCCeEEEeCccCC------------HHHHHHHHh----hCCCcEEEEEEeChhhhcccccchh
Q 027791 129 ----ALLSKRLEEGYYRGESGFILDGIPRT------------RIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVIL 188 (219)
Q Consensus 129 ----~Ll~~~l~~~~~~~~~g~IlDG~Pr~------------~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~ 188 (219)
..+.+.++ .+.-+|.|-|..+ .+....++. ...||++|+|++|++++ +
T Consensus 80 ~~~~~~i~paL~-----~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~-------~ 147 (213)
T 4tmk_A 80 QLVETVIKPALA-----NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVG-------L 147 (213)
T ss_dssp HHHHHTHHHHHH-----TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------H
T ss_pred HHHHHHHHHHHH-----CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHH-------H
Confidence 12222222 2456888965321 222333332 24799999999999999 9
Q ss_pred hhhhcCC
Q 027791 189 NEQVDGS 195 (219)
Q Consensus 189 ~Rl~~R~ 195 (219)
+|+.+|.
T Consensus 148 ~Ri~~R~ 154 (213)
T 4tmk_A 148 KRARARG 154 (213)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 9998874
No 59
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.26 E-value=3.1e-12 Score=101.97 Aligned_cols=108 Identities=13% Similarity=0.103 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhccccC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
+.|+|+|+|||||||+++.|++++|+++++.|+++++... .+. .+.+. .|.....+....++. .+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g--~~~----~~~~~~~g~~~~~~~~~~~~~-~l~~----- 72 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN--QKV----SEIFEQKRENFFREQEQKMAD-FFSS----- 72 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT--SCH----HHHHHHHCHHHHHHHHHHHHH-HHTT-----
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC--CCH----HHHHHHcCHHHHHHHHHHHHH-HHHc-----
Confidence 3699999999999999999999999999999998876421 111 12221 222222222223322 2221
Q ss_pred CCeEEEe-CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 143 ESGFILD-GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 143 ~~g~IlD-G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
...+|++ |.+...+ .. +. ..+.+|+|++|++++ .+|+.+|.
T Consensus 73 ~~~~vi~~g~~~~~~-~~-l~---~~~~~i~l~~~~e~~-------~~R~~~r~ 114 (175)
T 1via_A 73 CEKACIATGGGFVNV-SN-LE---KAGFCIYLKADFEYL-------KKRLDKDE 114 (175)
T ss_dssp CCSEEEECCTTGGGS-TT-GG---GGCEEEEEECCHHHH-------TTCCCGGG
T ss_pred cCCEEEECCCCEehh-hH-Hh---cCCEEEEEeCCHHHH-------HHHHhccc
Confidence 2346666 6433222 11 32 247899999999999 99987763
No 60
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.22 E-value=1.2e-11 Score=101.98 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=36.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhh
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~ 101 (219)
++.|.|+|++||||||+++.|++.||+++++.|++++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~ 43 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL 43 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehh
Confidence 468999999999999999999999999999999999854
No 61
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.21 E-value=2.8e-11 Score=103.49 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=75.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-CCcccHHHHHHHHHHHHHhcccc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYR 141 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-g~~ip~e~i~~Ll~~~l~~~~~~ 141 (219)
+..|+|+|++||||||+++.|++.+|+++++.+++++.... +.++ .+.+.. |+....+....++......
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~~i----~~i~~~~ge~~fr~~e~~~l~~l~~~---- 118 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GTSV----AEIFEHFGESVFREKETEALKKLSLM---- 118 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TSCH----HHHHHHHCHHHHHHHHHHHHHHHHHH----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-CccH----HHHHHHhCcHHHHHHHHHHHHHHHhh----
Confidence 56799999999999999999999999999999998887652 2222 222222 3333333333333332222
Q ss_pred CCCeEEEe--CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791 142 GESGFILD--GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVD 193 (219)
Q Consensus 142 ~~~g~IlD--G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~ 193 (219)
....+|.+ |.+......+.+. .+.+|||+++++++ .+|+.+
T Consensus 119 ~~~~Via~GgG~v~~~~~~~~l~----~~~vV~L~a~~e~l-------~~Rl~~ 161 (250)
T 3nwj_A 119 YHQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEAL-------AHRIAA 161 (250)
T ss_dssp CSSEEEECCGGGGGSHHHHHHHT----TSEEEEEECCHHHH-------HHHHHC
T ss_pred cCCcEEecCCCeecCHHHHHHHh----CCcEEEEECCHHHH-------HHHHhh
Confidence 12345554 4666666665553 27899999999999 999976
No 62
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.20 E-value=3.6e-11 Score=101.95 Aligned_cols=119 Identities=12% Similarity=-0.012 Sum_probs=70.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCC--CeeccchhHHhhcCCC----chhHHHHHHHHHcCCcccHHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSPR----SALYKQIANAVNEGKLVPEDVIFALLSKR 134 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~--~~Is~~dllr~~~~~~----s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~ 134 (219)
.++..|+|+|+|||||||+++.|+++++. .+++. |.++...... ...+..+.++.+. ...+.+..++...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~-D~~r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~~ 105 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG-DSFRSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTKL 105 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECG-GGGGTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEec-HHHHHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHHH
Confidence 46788999999999999999999999973 44454 5566543220 0011111111110 0112222222222
Q ss_pred HHhccccCCCeEEEeCccCCHHHHHHHH----hhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 135 LEEGYYRGESGFILDGIPRTRIQAVSLE----FCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 135 l~~~~~~~~~g~IlDG~Pr~~~qa~~l~----~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+. .+.++|+||++++..+...+. .......++++++|++++ .+|..+|.
T Consensus 106 ~~-----~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~-------~~R~~~R~ 158 (253)
T 2p5t_B 106 SS-----LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELS-------YLSTLIRY 158 (253)
T ss_dssp HH-----TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHH-------HHHHHHHH
T ss_pred Hh-----cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHH-------HHHHHHHH
Confidence 22 235799999998776544433 222333467889999999 88887663
No 63
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.19 E-value=3.6e-10 Score=93.02 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHH------HH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS------KR 134 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~------~~ 134 (219)
|.|+|.|+.|||||||++.|++.| |.+++.+. + +.+++.++.+++.+.++...|.....-... +.
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr----e--P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR----E--PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE----S--SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE----C--CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999987 77776442 2 567889999999887665544322111111 11
Q ss_pred HHhccccCCCeEEEeCccCC------------HHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 135 LEEGYYRGESGFILDGIPRT------------RIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 135 l~~~~~~~~~g~IlDG~Pr~------------~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
+... ...+.-+|.|-|..+ .+....+.. ...||++|+|++|++++ ++|..+|
T Consensus 75 I~~~-L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~-------~~R~~~~ 142 (197)
T 3hjn_A 75 IKQY-LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETA-------LKRKGEL 142 (197)
T ss_dssp HHHH-HTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHHC---
T ss_pred HHHH-HHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHH-------HHhCcCc
Confidence 2111 123456788966422 111222221 24799999999999999 9997655
No 64
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.19 E-value=4.1e-11 Score=100.18 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=83.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-----CCccc------------
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-----GKLVP------------ 123 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-----g~~ip------------ 123 (219)
...-.|.++|.+||||||+++.|++ +|+++|+.|.+.++.+.++.+..+.+.+.+.. ...+.
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~ 85 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDE 85 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCH
Confidence 3456799999999999999999987 99999999999999888777666666554421 11122
Q ss_pred ------HHHHHHHHHHHHHhccc-cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 124 ------EDVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 124 ------~e~i~~Ll~~~l~~~~~-~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
+.++..++.+.+.+... ....-+|+|. |.-.+... +.. .+|.+|++++|+++. .+|+.+|+
T Consensus 86 ~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~~-~~~--~~D~vi~V~ap~e~r-------~~Rl~~Rd 153 (210)
T 4i1u_A 86 DARRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESRN-WKA--RCDRVLVVDCPVDTQ-------IARVMQRN 153 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCHH-HHH--HCSEEEEEECCHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccccCC-ccc--cCCeEEEEECCHHHH-------HHHHHhcC
Confidence 13444444444433211 1233467774 54333111 122 279999999999999 99999885
No 65
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.15 E-value=9.5e-11 Score=96.28 Aligned_cols=116 Identities=11% Similarity=0.118 Sum_probs=70.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcC----Cccc-------------
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG----KLVP------------- 123 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g----~~ip------------- 123 (219)
..-+.|.|+|++||||||+++.|++.+|+++|++|++.++.... ..+.+.+.+... ..+.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~ 86 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLEDGKVNRKKLAGIVFESRE 86 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHH
Confidence 34578999999999999999999999999999999998887542 112222222100 0011
Q ss_pred -----HHHHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhh
Q 027791 124 -----EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQ 191 (219)
Q Consensus 124 -----~e~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl 191 (219)
+.++...+...+.......+..+|+|+ |...+. . +.. ..|.+|++++|+++. ++|+
T Consensus 87 ~~~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~-pll~e~-~-~~~--~~d~vi~v~a~~e~r-------~~Rl 147 (192)
T 2grj_A 87 NLKKLELLVHPLMKKRVQEIINKTSGLIVIEA-ALLKRM-G-LDQ--LCDHVITVVASRETI-------LKRN 147 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC-TTTTTT-T-GGG--GCSEEEEEECCHHHH-------HHHC
T ss_pred HHHHHHhhhCHHHHHHHHHHHHHcCCEEEEEE-eceeec-C-hHH--hCCEEEEEECCHHHH-------HHHH
Confidence 112222222222221101133567774 543332 1 222 368999999999999 9987
No 66
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.14 E-value=2.6e-11 Score=102.55 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=72.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCC----------eeccchhHHhhcCCCchhHHHHHHHHHcCCc-------cc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP----------HISMGSLVRQELSPRSALYKQIANAVNEGKL-------VP 123 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~----------~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~-------ip 123 (219)
.+++.|.|+|+|||||||+|+.|++.+|++ ++++|++++.... ..+. ....|.. ..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~------~~~~-~~~~g~~~f~~~~~~d 92 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTS------EQKA-KALKGQFNFDHPDAFD 92 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCH------HHHH-HHHTTCSCTTSGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccCh------hhhh-hhccCCCCCCCcchhh
Confidence 466889999999999999999999999998 7999998874210 1111 1112221 11
Q ss_pred HHHHHHHHHHHHHhcc--------------------ccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhccc
Q 027791 124 EDVIFALLSKRLEEGY--------------------YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVII 183 (219)
Q Consensus 124 ~e~i~~Ll~~~l~~~~--------------------~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~ 183 (219)
.+.+...|+. +.... ......+|+||.+.-.+ .. +.. .+|.+|+|+++++++
T Consensus 93 ~~~l~~~L~~-l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~-~~-~~~--~~d~vi~l~~~~e~~--- 164 (252)
T 1uj2_A 93 NELILKTLKE-ITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS-QE-VRD--LFQMKLFVDTDADTR--- 164 (252)
T ss_dssp HHHHHHHHHH-HHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS-HH-HHH--HCSEEEEEECCHHHH---
T ss_pred HHHHHHHHHH-HHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccC-HH-HHH--hcCeeEEEeCCHHHH---
Confidence 2222333333 22110 01245799999654211 11 222 258999999999999
Q ss_pred ccchhhhhhcCC
Q 027791 184 GSVILNEQVDGS 195 (219)
Q Consensus 184 ~~~~~~Rl~~R~ 195 (219)
++|+.+|.
T Consensus 165 ----~~R~~~R~ 172 (252)
T 1uj2_A 165 ----LSRRVLRD 172 (252)
T ss_dssp ----HHHHHHHH
T ss_pred ----HHHHHHHH
Confidence 99998774
No 67
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.13 E-value=2.7e-10 Score=89.90 Aligned_cols=112 Identities=15% Similarity=0.136 Sum_probs=66.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
+..|+|+|+|||||||+++.|++.++.++++.++++++... ..+...... .|+....+.-..++. .+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~--~~i~~i~~~---~g~~~~~~~~~~~l~-~l~~----- 72 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADVGWVFDL---EGEEGFRDREEKVIN-ELTE----- 72 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT--SCHHHHHHH---HHHHHHHHHHHHHHH-HHHT-----
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC--cCHHHHHHH---HhHHHHHHHHHHHHH-HHHh-----
Confidence 45799999999999999999999999999999888775432 112111110 011000111112222 2221
Q ss_pred CCeEEEe---CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 143 ESGFILD---GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 143 ~~g~IlD---G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
..++|+. |.+......+.+.. .+++++++++++++ .+|+.+|.
T Consensus 73 ~~~~v~~~~~~~~~~~~~~~~l~~---~~~~i~l~~~~~~l-------~~R~~~r~ 118 (173)
T 1kag_A 73 KQGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQ-------LARTQRDK 118 (173)
T ss_dssp SSSEEEECCTTGGGSHHHHHHHHH---HSEEEECCCCHHHH-------HSCC----
T ss_pred CCCeEEECCCeEEecHHHHHHHHh---CCEEEEEeCCHHHH-------HHHHhCCC
Confidence 2345553 45554444454544 47899999999999 99998874
No 68
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.12 E-value=3e-10 Score=95.68 Aligned_cols=122 Identities=13% Similarity=0.026 Sum_probs=69.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCC-CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHH-HHHHHHHHhc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF-ALLSKRLEEG 138 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~-~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~-~Ll~~~l~~~ 138 (219)
.+++.|+|.|++||||||+++.|++.++- ..+++-.+.++ +.++++++.+++++.+....+..... -...+|.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre--P~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~ 96 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE--PGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF 96 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES--SCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC--CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999998755 33322111233 45789999999988753324443322 1112222211
Q ss_pred c------ccCCCeEEEeCccCC------------HHHHHHHHhh---CCCcEEEEEEeChhhhcccccchhhhh
Q 027791 139 Y------YRGESGFILDGIPRT------------RIQAVSLEFC---YTMALAFLFLFLYGCCVIIGSVILNEQ 191 (219)
Q Consensus 139 ~------~~~~~g~IlDG~Pr~------------~~qa~~l~~~---~~pd~VI~L~~~~e~l~~~~~~~~~Rl 191 (219)
. ...+..+|.|-|..+ .+....++.. ..||++|+|++|++++ ++|+
T Consensus 97 ~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~-------~~Ri 163 (223)
T 3ld9_A 97 VKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINES-------LSRS 163 (223)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC---------------
T ss_pred HHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHH-------HHHh
Confidence 0 122456788966421 2222233222 3799999999999999 9998
No 69
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.11 E-value=1.6e-10 Score=92.98 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is 93 (219)
+.|+|+|+|||||||+++.|+++++.+++.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 478999999999999999999999987764
No 70
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.11 E-value=2.8e-10 Score=103.55 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=74.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~ 139 (219)
+..+..|+|+|+|||||||+++.|++++++.+|+.|++ +. . ..+...+...+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~--------~---------------~~~~~~~~~~l~~-- 308 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-GS--------W---------------QRCVSSCQAALRQ-- 308 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-CS--------H---------------HHHHHHHHHHHHT--
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-HH--------H---------------HHHHHHHHHHHhc--
Confidence 45678899999999999999999999999999999875 10 0 1122223334433
Q ss_pred ccCCCeEEEeCccCCHHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 140 YRGESGFILDGIPRTRIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 140 ~~~~~g~IlDG~Pr~~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
+..+|+|+...+..+.+.+.. ......+|+|+++.+++ .+|+.+|..
T Consensus 309 ---g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l-------~~R~~~R~~ 359 (416)
T 3zvl_A 309 ---GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQA-------RHNNRFREM 359 (416)
T ss_dssp ---TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHH-------HHHHHHHHH
T ss_pred ---CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHH-------HHHHHhhcc
Confidence 357999998887766555432 23456799999999999 999988864
No 71
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.10 E-value=4.4e-10 Score=94.17 Aligned_cols=121 Identities=13% Similarity=0.046 Sum_probs=78.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCC-cccHHHHHHH-HHHHHHhc-
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-LVPEDVIFAL-LSKRLEEG- 138 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~-~ip~e~i~~L-l~~~l~~~- 138 (219)
+++.|+|.|++||||||+++.|++.++..+ .++++. ..++++|+.+++++.+.. ..++....-+ ..+|.+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~----~~~~ep-~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~ 78 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC----KLLKFP-ERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD 78 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSE----EEEESS-CTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccc----eEEEec-CCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999998732 344433 357899999999998654 3333221111 11222100
Q ss_pred ----cccCCCeEEEeCccCCH--H---------HHHHHHh----hCCCcEEEEE-EeChhhhcccccchhhhhhcC
Q 027791 139 ----YYRGESGFILDGIPRTR--I---------QAVSLEF----CYTMALAFLF-LFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 139 ----~~~~~~g~IlDG~Pr~~--~---------qa~~l~~----~~~pd~VI~L-~~~~e~l~~~~~~~~~Rl~~R 194 (219)
....+..+|.|-|..+. . ..+++.. ...||++|+| ++|++++ ++|+.+|
T Consensus 79 ~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~-------~~R~~~~ 147 (216)
T 3tmk_A 79 KIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNN-------AEKSGFG 147 (216)
T ss_dssp HHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCG-------GGCCSSS
T ss_pred HHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHH-------HHHhccC
Confidence 01234567889664321 0 1223332 2379999999 9999999 9997643
No 72
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.08 E-value=6.9e-10 Score=89.76 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=34.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhh
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~ 101 (219)
.|.|+|++||||||+++.|++++|+++++.|++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~ 40 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAA 40 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhh
Confidence 7899999999999999999999999999999988765
No 73
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.07 E-value=2.3e-10 Score=99.21 Aligned_cols=111 Identities=12% Similarity=0.085 Sum_probs=67.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc--CCCeeccchhHHhhcCCCchhHHHHHHHHHcC----CcccHHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEG----KLVPEDVIFALLSKR 134 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l--g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g----~~ip~e~i~~Ll~~~ 134 (219)
.++..|+|.|+|||||||+++.|++++ ++.+||.| .++....... ..+.+....- ......+...++...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D-~~R~~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 106 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND-TFKQQHPNFD---ELVKLYEKDVVKHVTPYSNRMTEAIISRL 106 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTH-HHHTTSTTHH---HHHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEech-HhHHhchhhH---HHHHHccchhhhhhhHHHHHHHHHHHHHH
Confidence 467889999999999999999999999 78888874 4665443211 1111111000 001112223333444
Q ss_pred HHhccccCCCeEEEeCccCCHHHHHHH----HhhCCCcEEEEEEeChhhh
Q 027791 135 LEEGYYRGESGFILDGIPRTRIQAVSL----EFCYTMALAFLFLFLYGCC 180 (219)
Q Consensus 135 l~~~~~~~~~g~IlDG~Pr~~~qa~~l----~~~~~pd~VI~L~~~~e~l 180 (219)
+.. +..+|+|+.+....+.+.+ .....+..+++|.+|++++
T Consensus 107 l~~-----g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~ 151 (287)
T 1gvn_B 107 SDQ-----GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINS 151 (287)
T ss_dssp HHH-----TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHH
T ss_pred Hhc-----CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHH
Confidence 433 4579999988876644333 2222344579999999988
No 74
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.06 E-value=2.3e-10 Score=95.68 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=37.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhh
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~ 101 (219)
+.++..|.|+|++||||||+++.|++++|+++++.|++.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~ 54 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA 54 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence 356778999999999999999999999999999999998864
No 75
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.04 E-value=4.5e-09 Score=83.17 Aligned_cols=120 Identities=13% Similarity=0.045 Sum_probs=64.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeec--cchhHHhhcCCCch---hHHHHHHHHHcCCcc-cH---HHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQELSPRSA---LYKQIANAVNEGKLV-PE---DVIFALLSK 133 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is--~~dllr~~~~~~s~---lg~~i~~~l~~g~~i-p~---e~i~~Ll~~ 133 (219)
++.|+|+|+|||||||+++.|+++++.+++. .|++.. ...+... .+..+. ..+... .+ .....+ ..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~ 77 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE-AMPLKMQSAEGGIEFD---ADGGVSIGPEFRALEGAW-AE 77 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH-HSCGGGGTSTTSEEEC---TTSCEEECHHHHHHHHHH-HH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh-hcchhhccchhhcccc---CCCccccchhHHHHHHHH-HH
Confidence 4679999999999999999999999887764 655443 3222100 000000 000000 01 111111 11
Q ss_pred HHHhccccCCCeEEEeCccC-CHHHHHHH-HhhC-CCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 134 RLEEGYYRGESGFILDGIPR-TRIQAVSL-EFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 134 ~l~~~~~~~~~g~IlDG~Pr-~~~qa~~l-~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
.+.... ..+..+|+|+... .....+.+ .... .+..+|+|++|.+++ .+|+.+|.
T Consensus 78 ~~~~~~-~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l-------~~R~~~r~ 134 (178)
T 1qhx_A 78 GVVAMA-RAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVA-------EGRETARG 134 (178)
T ss_dssp HHHHHH-HTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHH-------HHHHHHTS
T ss_pred HHHHHH-hcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHH-------HHHHHhhC
Confidence 111110 1235689998543 22211222 2222 234688899999999 99998875
No 76
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.00 E-value=1.5e-10 Score=95.01 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=36.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhh
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~ 101 (219)
++.|+|+|++||||||+++.|++++|+++++.|++++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~ 41 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL 41 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence 467999999999999999999999999999999998863
No 77
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.98 E-value=3e-09 Score=85.24 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=63.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC---C--CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHH--HH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE---V--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL--SK 133 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg---~--~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll--~~ 133 (219)
.++..|+|+|+|||||||+++.|++.++ . .+++. |.++..+.....+...-+ ...+..+. ..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~r----------~~~~~~~~~~~~ 79 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG-DWARTTVSEGAGFTREER----------LRHLKRIAWIAR 79 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH-HHHHTTTTTTCCCCHHHH----------HHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH-HHHHHHHhhccCCChhhH----------HHHHHHHHHHHH
Confidence 4678999999999999999999999874 3 34544 445554332111100000 01111111 11
Q ss_pred HHHhccccCCCeEEEeCccCCHHHHHHHH----hhCCCcEEEEEEeChhhhcccccchhhhhh
Q 027791 134 RLEEGYYRGESGFILDGIPRTRIQAVSLE----FCYTMALAFLFLFLYGCCVIIGSVILNEQV 192 (219)
Q Consensus 134 ~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~----~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~ 192 (219)
.+. ..+..+|+|++.......+.+. ....++.+|+|++|++++ .+|+.
T Consensus 80 ~~~----~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~-------~~R~~ 131 (186)
T 2yvu_A 80 LLA----RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEV-------IRRDP 131 (186)
T ss_dssp HHH----TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHH-------HHHCH
T ss_pred HHH----hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHH-------HHhhh
Confidence 111 1234567788654433333332 223578999999999999 88874
No 78
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.98 E-value=3.8e-09 Score=84.14 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=32.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccc-hhHHh
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMG-SLVRQ 100 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~-dllr~ 100 (219)
.++..|+|+|++||||||+++.|++.+ |++++.++ +.++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHH
Confidence 467889999999999999999999998 99988654 34444
No 79
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.97 E-value=3.1e-09 Score=87.18 Aligned_cols=107 Identities=13% Similarity=0.007 Sum_probs=63.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC------CCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHH---HHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI---FALL 131 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg------~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i---~~Ll 131 (219)
.++..|+|+|+|||||||+++.|++.++ +.+++. |.++..+.........-+ .+.+ ..++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~-d~~r~~l~~~~~~~~~~r----------~~~~~~~~~~~ 91 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG-DNIRFGLNKDLGFSEADR----------NENIRRIAEVA 91 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH-HHHTTTTTTTCCSSHHHH----------HHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC-hHHhhhhccccCCCHHHH----------HHHHHHHHHHH
Confidence 4578899999999999999999999886 666664 445544332111110000 0111 1222
Q ss_pred HHHHHhccccCCCeEEEeCccCC-HHHHHHHHh----------hCCCcEEEEEEeChhhhcccccchhhhh
Q 027791 132 SKRLEEGYYRGESGFILDGIPRT-RIQAVSLEF----------CYTMALAFLFLFLYGCCVIIGSVILNEQ 191 (219)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDG~Pr~-~~qa~~l~~----------~~~pd~VI~L~~~~e~l~~~~~~~~~Rl 191 (219)
...+. .+..+|+| |+.. ....+.+.. ...|+.+|+|++|++++ ++|+
T Consensus 92 ~~~l~-----~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~-------~~R~ 149 (211)
T 1m7g_A 92 KLFAD-----SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVA-------EQRD 149 (211)
T ss_dssp HHHHH-----TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHH-------HTSC
T ss_pred HHHHH-----CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHH-------HHhh
Confidence 22232 24568889 5431 122333322 12468999999999999 8884
No 80
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.90 E-value=7.8e-10 Score=90.19 Aligned_cols=120 Identities=16% Similarity=0.155 Sum_probs=72.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc-CCCeeccchhHHhhcCCCchhHHHHHHHHHcC---CcccHHHHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEG---KLVPEDVIFALLSKRLE 136 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l-g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g---~~ip~e~i~~Ll~~~l~ 136 (219)
.++..|.|+|+|||||||+++.|++.+ ++.+++.|++++..-+- ..+. ...... ..+....+.+.+...++
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~l~~~i~~~l~ 93 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEI--ETDK---NGFLQYDVLEALNMEKMMSAISCWME 93 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGS--CBCT---TSCBCCSSGGGBCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHh--hccc---cCCChhHHHHHhHHHHHHHHHHHHHh
Confidence 356789999999999999999999988 89999999887543110 0000 000000 00111222222222222
Q ss_pred hc---c-------ccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 137 EG---Y-------YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 137 ~~---~-------~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
.. . ......+|+||++... .+.+. ..+|.+|+++++++++ .+|+.+|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~vi~eg~~~~~--~~~~~--~~~d~~i~l~~~~~~~-------~~R~~~R~~ 152 (207)
T 2qt1_A 94 SARHSVVSTDQESAEEIPILIIEGFLLFN--YKPLD--TIWNRSYFLTIPYEEC-------KRRRSTRVY 152 (207)
T ss_dssp HHTTSSCCC-----CCCCEEEEECTTCTT--CGGGT--TTCSEEEEEECCHHHH-------HHHHHHSCC
T ss_pred CCCCCCcCCCeeecCCCCEEEEeehHHcC--cHHHH--HhcCeeEEEECCHHHH-------HHHHHHcCC
Confidence 10 0 0124578999975331 11121 2579999999999999 999987753
No 81
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.90 E-value=4.9e-09 Score=88.85 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=36.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHh
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ 100 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~ 100 (219)
.++..|.|+|++||||||+++.|+++||+++++.|+++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~ 64 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV 64 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence 3567899999999999999999999999999999998855
No 82
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.89 E-value=4e-09 Score=86.08 Aligned_cols=121 Identities=12% Similarity=0.050 Sum_probs=71.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCC-CeeccchhHHhhcCCCc---h----hHHHHHHHHHcCCcccHH-------
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRS---A----LYKQIANAVNEGKLVPED------- 125 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~-~~Is~~dllr~~~~~~s---~----lg~~i~~~l~~g~~ip~e------- 125 (219)
.++..|+|+|||||||||+++.|++.++- .+++..+..|+...... . ..+.+...+.++..+...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence 56778999999999999999999999853 34444444444321100 0 012334444444332210
Q ss_pred -HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCC--CcEEEEEE-eChhhhcccccchhhhhhcCCC
Q 027791 126 -VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYT--MALAFLFL-FLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 126 -~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~--pd~VI~L~-~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
.....+.+.+.. +..+|+|+.+.... .+..... -..+|+|+ ++++++ .+|+.+|..
T Consensus 90 ~~~~~~i~~~l~~-----g~~vi~d~~~~~~~---~l~~~~~~~~~~~i~l~~~s~e~l-------~~Rl~~R~~ 149 (204)
T 2qor_A 90 GTLKSEYDLAVGE-----GKICLFEMNINGVK---QLKESKHIQDGIYIFVKPPSIDIL-------LGRLKNRNT 149 (204)
T ss_dssp EEEHHHHHHHHHT-----TCEEEEECCHHHHH---HHHHCSSCSCCEEEEEECSCHHHH-------HHHHHTCTT
T ss_pred cCCHHHHHHHHHc-----CCeEEEEECHHHHH---HHHHhcCCCCeEEEEEcCCCHHHH-------HHHHHHcCC
Confidence 001122333332 46899998764333 3333222 23899999 999999 999998863
No 83
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.89 E-value=7e-09 Score=85.41 Aligned_cols=117 Identities=11% Similarity=0.033 Sum_probs=65.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCC-chhHHHHHHHHHcCC-cc------------cHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR-SALYKQIANAVNEGK-LV------------PEDVIF 128 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~-s~lg~~i~~~l~~g~-~i------------p~e~i~ 128 (219)
.+.|.|.|++||||||+++.||+++|+++++ +++++...... .+. ..+.+.-+... .. ..+.+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSK-EVLERFDEKPMNFAFIPVPAGGTTISLEQDIA 83 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCH-HHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence 4689999999999999999999999999999 88887654321 111 11111100000 00 011112
Q ss_pred HHHHHHHHhcccc-CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 129 ALLSKRLEEGYYR-GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 129 ~Ll~~~l~~~~~~-~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
....+.+.+. .. ...+.|++|-- -. -.+.. ..-.++|+|++|.+++ .+|+.++
T Consensus 84 ~~~~~~i~~l-a~~~~~~~Vi~Gr~--g~--~vl~~-~~~~~~V~L~A~~e~r-------~~R~~~~ 137 (201)
T 3fdi_A 84 IRQFNFIRKK-ANEEKESFVIVGRC--AE--EILSD-NPNMISAFILGDKDTK-------TKRVMER 137 (201)
T ss_dssp HHHHHHHHHH-HHTSCCCEEEESTT--HH--HHTTT-CTTEEEEEEEECHHHH-------HHHHHHH
T ss_pred HHHHHHHHHH-HhhcCCCEEEEECC--cc--hhcCC-CCCeEEEEEECCHHHH-------HHHHHHH
Confidence 2222222221 10 23568888751 11 11221 1125899999999999 9998765
No 84
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.84 E-value=3.4e-10 Score=92.11 Aligned_cols=123 Identities=15% Similarity=0.081 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchh-HHHHHHHHHc--CCcccHHHHHHHHH--------
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSAL-YKQIANAVNE--GKLVPEDVIFALLS-------- 132 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~l-g~~i~~~l~~--g~~ip~e~i~~Ll~-------- 132 (219)
+.|+|.|++||||||+++.|++.++...+++. +++... .+++. ++.++..+.. +...++.....++.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-TLAFPR-YGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAV 78 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-EEESSE-EEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-EEeecC-CCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhH
Confidence 36899999999999999999999854333221 111100 01111 2223332211 11111111111111
Q ss_pred HHHHhccccCCCeEEEeCccCCH--HHH------------HHHHhh-------CCCcEEEEEEeChhhhcccccchhhhh
Q 027791 133 KRLEEGYYRGESGFILDGIPRTR--IQA------------VSLEFC-------YTMALAFLFLFLYGCCVIIGSVILNEQ 191 (219)
Q Consensus 133 ~~l~~~~~~~~~g~IlDG~Pr~~--~qa------------~~l~~~-------~~pd~VI~L~~~~e~l~~~~~~~~~Rl 191 (219)
+.+.... ..+..+|+|+++.+. .|. +++... ..||.+|+|++|++++ ++|+
T Consensus 79 ~~i~~~l-~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~-------~~R~ 150 (214)
T 1gtv_A 79 HTIQGLC-RGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELA-------GERS 150 (214)
T ss_dssp HHHHHEE-EEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHH-------HHHH
T ss_pred HHHHHHh-hCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHH-------HHHH
Confidence 1122211 224568899998653 121 222221 2589999999999999 9999
Q ss_pred hcCCC
Q 027791 192 VDGSL 196 (219)
Q Consensus 192 ~~R~~ 196 (219)
.+|..
T Consensus 151 ~~R~~ 155 (214)
T 1gtv_A 151 RGRAQ 155 (214)
T ss_dssp HHHHH
T ss_pred Hcccc
Confidence 88853
No 85
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.82 E-value=1.2e-08 Score=86.62 Aligned_cols=120 Identities=12% Similarity=0.101 Sum_probs=68.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHh-hcC--CCchhHHHHHH---H-H-----HcCCcccHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ-ELS--PRSALYKQIAN---A-V-----NEGKLVPEDVIFALL 131 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~-~~~--~~s~lg~~i~~---~-l-----~~g~~ip~e~i~~Ll 131 (219)
..|+|+|||||||||+++.|+++++.++++.|++... ... ...+...+... . + .++ ........+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~f~~~~ 80 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEG-ILDAESAHRRL 80 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGC-SCCHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccc-cccHHHHHHHH
Confidence 4688999999999999999999999999999886421 110 00010000000 0 0 000 12333333344
Q ss_pred HHHHHhccccCCCeEEEeCccCCHHHHHHH-Hhh---CCC-cEEEEEEeCh-hhhcccccchhhhhhcCC
Q 027791 132 SKRLEEGYYRGESGFILDGIPRTRIQAVSL-EFC---YTM-ALAFLFLFLY-GCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l-~~~---~~p-d~VI~L~~~~-e~l~~~~~~~~~Rl~~R~ 195 (219)
...+ +.. ..+..+|++|-.. ...+.+ ... ... ..+|+|++|. +++ .+|+.+|.
T Consensus 81 ~~~i-~~~-~~g~~vIl~gg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l-------~~Rl~~R~ 139 (253)
T 2ze6_A 81 IFEV-DWR-KSEEGLILEGGSI--SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAF-------LTRAKQRV 139 (253)
T ss_dssp HHHH-HTT-TTSSEEEEEECCH--HHHHHHHHCTTTTSSCEEEEEECCCCCHHHH-------HHHHHHHH
T ss_pred HHHH-HHH-hCCCCeEEeccHH--HHHHHHHhcccccccCceEEEEecchhHHHH-------HHHHHHHH
Confidence 4444 321 2345677775322 222222 220 112 2689999997 999 99998874
No 86
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.80 E-value=1.3e-08 Score=85.51 Aligned_cols=41 Identities=7% Similarity=0.169 Sum_probs=36.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS 103 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~ 103 (219)
..+.|.|.|++||||||+++.||+++|+++++ +|+++....
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~ 53 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASE 53 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHH
Confidence 35789999999999999999999999999999 677776553
No 87
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.80 E-value=4.8e-08 Score=79.34 Aligned_cols=110 Identities=14% Similarity=0.113 Sum_probs=63.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---CCC--eeccchhHHhhcCCCchhH-HHHHHHHHcCCcccHHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVRQELSPRSALY-KQIANAVNEGKLVPEDVIFALLSKR 134 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~--~Is~~dllr~~~~~~s~lg-~~i~~~l~~g~~ip~e~i~~Ll~~~ 134 (219)
.++..|+|+|++||||||+++.|+..+ |.. +++.+++ +..+.....+. +.....+ ..+..+ ...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~ 92 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV-RHGLNRDLSFKAEDRAENI--------RRVGEV-AKL 92 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-TTTTTTTCCSSHHHHHHHH--------HHHHHH-HHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh-hhHhhcccCcChHHHHHHH--------HHHHHH-HHH
Confidence 456789999999999999999999998 655 7776554 33332211110 0000000 001111 111
Q ss_pred HHhccccCCCeEEEeCccCCHHHHHHHHhhCC--CcEEEEEEeChhhhcccccchhhhh
Q 027791 135 LEEGYYRGESGFILDGIPRTRIQAVSLEFCYT--MALAFLFLFLYGCCVIIGSVILNEQ 191 (219)
Q Consensus 135 l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~--pd~VI~L~~~~e~l~~~~~~~~~Rl 191 (219)
+.. .+..+|.++........+.+.+... ...+|+|+++.+++ .+|.
T Consensus 93 ~~~----~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~-------~~R~ 140 (200)
T 3uie_A 93 FAD----AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVC-------EARD 140 (200)
T ss_dssp HHH----TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHH-------HHHC
T ss_pred HHh----CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHH-------HHhc
Confidence 221 2345666654334455555555433 34679999999999 9997
No 88
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.76 E-value=6.7e-08 Score=92.38 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=65.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccc-hhHHhhcCCCchhHHHHH-HHHHcCCcccHHHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMG-SLVRQELSPRSALYKQIA-NAVNEGKLVPEDVIFALLSKRL 135 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~-dllr~~~~~~s~lg~~i~-~~l~~g~~ip~e~i~~Ll~~~l 135 (219)
.+++.|+|+|+|||||||+++.|++++ |++++.++ |.+|..+.........-+ +.+ .+ +..++...+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~-------r~-i~eva~~~l 121 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV-------RR-IAEVAKLFA 121 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH-------HH-HHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH-------HH-HHHHHHHHH
Confidence 367899999999999999999999999 99988774 566654432111110000 000 01 112222112
Q ss_pred HhccccCCCeEEEeC-ccCC--HHHHHHH-HhhCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791 136 EEGYYRGESGFILDG-IPRT--RIQAVSL-EFCYTMALAFLFLFLYGCCVIIGSVILNEQVD 193 (219)
Q Consensus 136 ~~~~~~~~~g~IlDG-~Pr~--~~qa~~l-~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~ 193 (219)
. .+.-+|.|+ .|.. .+....+ .....++.+|+|++|++++ .+|+.+
T Consensus 122 ~-----~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl-------~~Rl~r 171 (630)
T 1x6v_B 122 D-----AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVC-------EQRDVK 171 (630)
T ss_dssp H-----TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHH-------HHHCTT
T ss_pred h-----CCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHH-------HHHhcc
Confidence 2 123455552 2221 1222222 2223468999999999999 999763
No 89
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.75 E-value=1.6e-09 Score=91.85 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc-CCCeec
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-EVPHIS 93 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l-g~~~Is 93 (219)
.+++.|+|.|++||||||+++.|++.+ ++.++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 577899999999999999999999998 666663
No 90
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.72 E-value=4.7e-09 Score=98.29 Aligned_cols=120 Identities=16% Similarity=0.134 Sum_probs=67.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCe-----eccchhHHhhcCCCchhHHHHHHHHHcCC----cccHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPH-----ISMGSLVRQELSPRSALYKQIANAVNEGK----LVPEDVIFALL 131 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~-----Is~~dllr~~~~~~s~lg~~i~~~l~~g~----~ip~e~i~~Ll 131 (219)
..+..|+++|.|||||||+++.|++.++..+ |+.|++.++........ +++.... ...+++....+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~-----~~f~~~~~~~~~~re~~~~~~l 107 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSY-----NFFRPDNEEAMKVRKQCALAAL 107 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCG-----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccc-----cccCcccHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999985443 67788555433221100 0010000 00011222222
Q ss_pred H---HHHHhccccCCCeEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeC-hhhhcccccchhhhhhcCC
Q 027791 132 S---KRLEEGYYRGESGFILDGIPRTRIQAVSLEFC----YTMALAFLFLFL-YGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 132 ~---~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~-~e~l~~~~~~~~~Rl~~R~ 195 (219)
. ..+.. ..+..+|+|+...+..+.+.+... .....+|++.|+ ++++ .+|+.+|.
T Consensus 108 ~~~~~~L~~---~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i-------~~ri~~r~ 169 (520)
T 2axn_A 108 RDVKSYLAK---EGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVV-------ASNIMEVK 169 (520)
T ss_dssp HHHHHHHHH---SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHH-------HHHHHHHT
T ss_pred HHHHHHHHh---cCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHH-------HHHHHhhh
Confidence 2 22211 235679999988887766554322 222346666677 5666 77876554
No 91
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.66 E-value=1.2e-07 Score=80.19 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=37.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL 102 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~ 102 (219)
.+++.|.|.|||||||||+++.|++++|+++++.|++++...
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~ 48 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT 48 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence 356889999999999999999999999999999999987743
No 92
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.58 E-value=3.2e-08 Score=88.01 Aligned_cols=30 Identities=17% Similarity=0.001 Sum_probs=26.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
..+++.|+|.|+.||||||+++.|++.++-
T Consensus 4 ~~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 4 MVTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 346789999999999999999999998854
No 93
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.58 E-value=4.5e-07 Score=85.32 Aligned_cols=112 Identities=16% Similarity=0.101 Sum_probs=66.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCC-----CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV-----PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE 136 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~-----~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~ 136 (219)
.+..|+|+|+|||||||+++.|+++++. .+++. |.++..+..+......-+... + +.+..++...+.
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~-D~ir~~l~~~~~f~~~er~~~-----l--~~i~~~~~~~l~ 442 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG-DVVRTHLSRGLGFSKEDRITN-----I--LRVGFVASEIVK 442 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH-HHHHHHTCTTCCSSHHHHHHH-----H--HHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc-hHhhhhhcccccccHHHHHHH-----H--HHHHHHHHHHHh
Confidence 4678999999999999999999998863 56665 456665543221111100000 0 011122222222
Q ss_pred hccccCCCeEEEeCccCCHHHHHHHHhhC-CCc-EEEEEEeChhhhcccccchhhhhhc
Q 027791 137 EGYYRGESGFILDGIPRTRIQAVSLEFCY-TMA-LAFLFLFLYGCCVIIGSVILNEQVD 193 (219)
Q Consensus 137 ~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~-~pd-~VI~L~~~~e~l~~~~~~~~~Rl~~ 193 (219)
.+.++|+|+........+.+.... .++ .+|+|++|.+++ .+|+.+
T Consensus 443 -----~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~-------~~Rl~r 489 (546)
T 2gks_A 443 -----HNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVC-------EERDVK 489 (546)
T ss_dssp -----TTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGH-------HHHCCS
T ss_pred -----CCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHH-------HHHhhc
Confidence 246899997433333333333322 256 899999999999 999863
No 94
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.52 E-value=4.1e-07 Score=72.72 Aligned_cols=116 Identities=11% Similarity=-0.024 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCC-CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~-~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~ 142 (219)
..++|+||+||||||+++.|++.++. .+++.+++.+. ...+.. .+.. ...+...+.+.+........ ..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~-~~~~~~-~~~~-------~~~~~~~~~~~l~~~~~~~~-~~ 72 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM-VVGGYR-PPWE-------SDELLALTWKNITDLTVNFL-LA 72 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTT-CCTTCC-CGGG-------CHHHHHHHHHHHHHHHHHHH-HT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhh-hccccc-cCcc-------chhHHHHHHHHHHHHHHHHH-hc
Confidence 46889999999999999999998865 67777665432 111100 0000 00011112222211111110 12
Q ss_pred CCeEEEeCccCCHHHHHHHHhh----C-C-CcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791 143 ESGFILDGIPRTRIQAVSLEFC----Y-T-MALAFLFLFLYGCCVIIGSVILNEQVDGSLC 197 (219)
Q Consensus 143 ~~g~IlDG~Pr~~~qa~~l~~~----~-~-pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~ 197 (219)
...+|+|++- .....+.+... . . ...+++|.++.+++ .+|...|...
T Consensus 73 ~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l-------~~R~~~r~~d 125 (189)
T 2bdt_A 73 QNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREEL-------LRRDALRKKD 125 (189)
T ss_dssp TCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHH-------HHHTTTSCC-
T ss_pred CCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHH-------HHHHHhcccc
Confidence 3468999852 33322222221 1 1 33568899999999 9999888644
No 95
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.50 E-value=3.3e-08 Score=79.71 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++..|+|+|++||||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999999876
No 96
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.48 E-value=1e-06 Score=73.04 Aligned_cols=119 Identities=9% Similarity=0.121 Sum_probs=71.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcC---CCeeccchhHHhhcC--CCchhHHHHHHHHHcCCcccHHHH---HHHH--
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELS--PRSALYKQIANAVNEGKLVPEDVI---FALL-- 131 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg---~~~Is~~dllr~~~~--~~s~lg~~i~~~l~~g~~ip~e~i---~~Ll-- 131 (219)
+++.|+|+|.|||||+|+++.+.+.+| +++++++|.++++.. .+-++...+.+. .-.+..-..++ ..+.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~-~ykE~~R~~m~~~g~~~R~~ 88 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTS-TYKEAFRKDMIRWGEEKRQA 88 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC--------CCSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchh-hhHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999999988884 788999999985321 111110100000 00000000000 0000
Q ss_pred -----HHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCC-CcEEEEEEeChhhhcccccchhhhh
Q 027791 132 -----SKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYT-MALAFLFLFLYGCCVIIGSVILNEQ 191 (219)
Q Consensus 132 -----~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~-pd~VI~L~~~~e~l~~~~~~~~~Rl 191 (219)
.+..... .....|||||. |...+.+.|.+... .-.+|.+.+++++. .+|.
T Consensus 89 d~~~~~~~~~~~--~~~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R-------~~Rg 144 (202)
T 3ch4_B 89 DPGFFCRKIVEG--ISQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSR-------QQRG 144 (202)
T ss_dssp CTTTTHHHHSBT--CCCSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHH-------HHTT
T ss_pred CchHHHHHHHHh--cCCCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHH-------HHHh
Confidence 0011111 12347999998 88888999976432 24579999999999 8984
No 97
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.45 E-value=7.9e-07 Score=70.81 Aligned_cols=118 Identities=17% Similarity=0.129 Sum_probs=64.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCC--eeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~--~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~ 139 (219)
++..++|+|+|||||||+++.|+..++.. +++.+++.... ......+ ++.+... +...+.+.+.......
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~-----~~~~~~~-~~~~v~~~l~~~~~~~- 79 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDP-----WLPQSHQ-QNRMIMQIAADVAGRY- 79 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCT-----TSSSHHH-HHHHHHHHHHHHHHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccC-----Cccchhh-hhHHHHHHHHHHHHHH-
Confidence 56789999999999999999999987655 66666654321 1110000 0000000 1112222221111100
Q ss_pred ccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791 140 YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 140 ~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~ 195 (219)
...+..+++|++.... ..+.+.....+..++++.++.+++ +.|+..|.
T Consensus 80 ~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ls~~~~~~v~-------~~R~~~r~ 127 (191)
T 1zp6_A 80 AKEGYFVILDGVVRPD-WLPAFTALARPLHYIVLRTTAAEA-------IERCLDRG 127 (191)
T ss_dssp HHTSCEEEECSCCCTT-TTHHHHTTCSCEEEEEEECCHHHH-------HHHHHTTC
T ss_pred hccCCeEEEeccCcHH-HHHHHHhcCCCeEEEEecCCHHHH-------HHHHHhcC
Confidence 0123457889865432 222232212233689999999999 99998774
No 98
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.42 E-value=4.4e-07 Score=73.82 Aligned_cols=118 Identities=11% Similarity=0.055 Sum_probs=53.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCee--ccchhHHhh---cCCCchhHHHHHHHHHcCCcccHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHI--SMGSLVRQE---LSPRSALYKQIANAVNEGKLVPEDVIFALLS 132 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~I--s~~dllr~~---~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~ 132 (219)
.++..|.|+|++||||||+++.|+..+ +..++ +.+...+.. ...+.+.+.. +. .+. +..+.+.+.+-
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~---~~-~~~-~d~~~l~~~v~ 94 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFE---YY-YLQ-WDVEWLTHQLF 94 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHH---HH-HTS-SCHHHHHHHTG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccC---CC-ccc-cCHHHHHHHHH
Confidence 467889999999999999999999876 55443 444433221 1112221211 11 111 11122212110
Q ss_pred HHHHh--------------------ccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhh
Q 027791 133 KRLEE--------------------GYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQV 192 (219)
Q Consensus 133 ~~l~~--------------------~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~ 192 (219)
..+.. .......-+|+||...... .+.. .+|.+|++++|++++ ++|+.
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~~--~~d~~i~v~~~~~~~-------~~R~~ 162 (201)
T 1rz3_A 95 RQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRK---EWRP--FFDFVVYLDCPREIR-------FAREN 162 (201)
T ss_dssp GGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTST---TTGG--GCSEEEEECCC----------------
T ss_pred HHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccH---HHHh--hcCEEEEEeCCHHHH-------HHHHh
Confidence 11100 0011244688898532211 1111 368999999999999 99999
Q ss_pred cCC
Q 027791 193 DGS 195 (219)
Q Consensus 193 ~R~ 195 (219)
+|.
T Consensus 163 ~R~ 165 (201)
T 1rz3_A 163 DQV 165 (201)
T ss_dssp ---
T ss_pred cCC
Confidence 886
No 99
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.39 E-value=7.1e-07 Score=74.42 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc-CC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EV 89 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l-g~ 89 (219)
+++.|+|.|++||||||+++.|++.+ ++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 46889999999999999999999999 44
No 100
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.39 E-value=4.6e-07 Score=75.34 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=26.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~ 91 (219)
..++..|.|+|+.||||||+++.|+.. +..+
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v 47 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY-KNDI 47 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG-TTTE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc-cCCe
Confidence 357789999999999999999999876 4433
No 101
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.38 E-value=2.1e-06 Score=70.21 Aligned_cols=120 Identities=15% Similarity=0.138 Sum_probs=58.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCC-CeeccchhHHhhcCC---Cch----hHHHHHHHHHcCCcccHH-------
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSP---RSA----LYKQIANAVNEGKLVPED------- 125 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~-~~Is~~dllr~~~~~---~s~----lg~~i~~~l~~g~~ip~e------- 125 (219)
.++..|+|+||+||||||+++.|++.+.- .+.+.....+..... +.. ......+.+.++..+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y 85 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY 85 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence 35678999999999999999999998753 333322222221111 000 012233333333321100
Q ss_pred -HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeC-hhhhcccccchhhhhhcCC
Q 027791 126 -VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFL-YGCCVIIGSVILNEQVDGS 195 (219)
Q Consensus 126 -~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~-~e~l~~~~~~~~~Rl~~R~ 195 (219)
+....+.+.++. +..+|+|..+... ..+........+|++..+ .+++ .+|+.+|.
T Consensus 86 g~~~~~i~~~l~~-----g~~vild~~~~g~---~~~~~~~~~~~~i~i~~ps~~~l-------~~Rl~~R~ 142 (208)
T 3tau_A 86 GTPLEYVEEKLAA-----GVDIFLEIEVQGA---MQVRKAMPEGIFIFLTPPDLSEL-------KNRIIGRG 142 (208)
T ss_dssp EEEHHHHHHHHHT-----TCCEEEECCHHHH---HHHHHHCTTSEEEEEECTTTTTS-------SCC-----
T ss_pred CCcHHHHHHHHHc-----CCeEEEEeeHHHH---HHHHHhCCCeEEEEEeCCCHHHH-------HHHHHhcC
Confidence 001112333333 4568999864333 333332222256666655 8888 89998885
No 102
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.37 E-value=2.5e-06 Score=80.67 Aligned_cols=113 Identities=15% Similarity=0.064 Sum_probs=61.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC----CC--eeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE----VP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKR 134 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg----~~--~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~ 134 (219)
.+++.|+|+|+|||||||+++.|+++++ .+ +++ +|.++..+.........-+. . . -+.+..++...
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD-~D~ir~~l~~~~~f~~~er~--~---~--i~ri~~v~~~~ 465 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL-GDTVRHELSSELGFTREDRH--T---N--IQRIAFVATEL 465 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE-HHHHHHHTCTTCCCSHHHHH--H---H--HHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC-cHHHHHHhccccCCChhHHH--H---H--HHHHHHHHHHH
Confidence 4568899999999999999999999986 44 444 35566544322111100000 0 0 00111222222
Q ss_pred HHhccccCCCeEEEeCccCCHHHHHHHHhh---CCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791 135 LEEGYYRGESGFILDGIPRTRIQAVSLEFC---YTMALAFLFLFLYGCCVIIGSVILNEQVD 193 (219)
Q Consensus 135 l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~---~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~ 193 (219)
.. .+..+|.|..-......+.+.+. ..++.+|+|++|.+++ .+|..+
T Consensus 466 ~~-----~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~-------~~R~~r 515 (573)
T 1m8p_A 466 TR-----AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHC-------EQSDKR 515 (573)
T ss_dssp HH-----TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHH-------HHHCSS
T ss_pred Hh-----CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHH-------HHHhcc
Confidence 22 23456666432112222222211 1245899999999999 898643
No 103
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.34 E-value=1.2e-06 Score=78.06 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCCCChHHHH-HHHHHHcCCC
Q 027791 61 RRGVQWVLIGDPGVKKHVYA-DNLSKLLEVP 90 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a-~~La~~lg~~ 90 (219)
.+++.|+|.|+.||||||++ +.|++.++-.
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~ 40 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITP 40 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence 46789999999999999999 9999987643
No 104
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.28 E-value=5e-07 Score=72.68 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
++..+.|+||+||||||+++.|+..+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456789999999999999999998864
No 105
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.21 E-value=1.7e-06 Score=76.96 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchh
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dl 97 (219)
.++..|+|+||+||||||++..||++++.++||.|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 3456899999999999999999999999999999875
No 106
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.18 E-value=6.8e-06 Score=75.46 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is 93 (219)
.++..|+++|.|||||||+++.|++.++...++
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~ 69 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVP 69 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCC
Confidence 467899999999999999999999987644443
No 107
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.18 E-value=4e-06 Score=67.93 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC--CCeeccchhHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVR 99 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg--~~~Is~~dllr 99 (219)
.++..|.|+|++||||||+++.|+..++ +.+++.+..++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 3567899999999999999999999998 88888877654
No 108
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.14 E-value=1e-05 Score=71.74 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
.+++.|+|.|+.||||||+++.|++.+.
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999999999875
No 109
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.13 E-value=1.9e-05 Score=71.11 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
.+++.|+|.|+.||||||+++.|++.+.
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5778999999999999999999999874
No 110
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.11 E-value=2.9e-06 Score=69.17 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccch
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGS 96 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~d 96 (219)
.++..|.|+||+||||||+++.|+..+. ..+|+.++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 4678899999999999999999999875 55666654
No 111
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.03 E-value=2.5e-05 Score=65.18 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
.++..|.|+||+||||||+++.|+..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 356789999999999999999999988865
No 112
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.00 E-value=8.9e-06 Score=71.74 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC-------CCeeccchhH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV 98 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-------~~~Is~~dll 98 (219)
.++..|.|.|++||||||+++.|+..++ +.++++|+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 5678899999999999999999998875 4457776643
No 113
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.94 E-value=5.1e-06 Score=73.45 Aligned_cols=35 Identities=26% Similarity=0.194 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchh
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dl 97 (219)
+..|+|+||+||||||++..|+++++.++|+.|++
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 35799999999999999999999999999999875
No 114
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.89 E-value=3.6e-05 Score=62.68 Aligned_cols=116 Identities=12% Similarity=0.013 Sum_probs=62.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCC-CeeccchhHHhhcCCC---ch----hHHHHHHHHHcCCcccHH--------HHHH
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPR---SA----LYKQIANAVNEGKLVPED--------VIFA 129 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~-~~Is~~dllr~~~~~~---s~----lg~~i~~~l~~g~~ip~e--------~i~~ 129 (219)
|+|+||+||||||+++.|.+++.- ..++..-.-|....+. .. .-++..+.+++|..+--. +...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~~ 83 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA 83 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeecc
Confidence 789999999999999999988632 2333333333322211 00 123455556666533210 1112
Q ss_pred HHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhC--CCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791 130 LLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCY--TMALAFLFLFLYGCCVIIGSVILNEQVDGSL 196 (219)
Q Consensus 130 Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~--~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~ 196 (219)
-+.+.+.+ +..+|+|.-+.. +..+.... .+..++.+--+.+++ .+|+.+|..
T Consensus 84 ~v~~~l~~-----g~~vil~id~~g---~~~~k~~~~~~~~~Ifi~pps~e~L-------~~RL~~Rg~ 137 (186)
T 1ex7_A 84 SVKQVSKS-----GKTCILDIDMQG---VKSVKAIPELNARFLFIAPPSVEDL-------KKRLEGRGT 137 (186)
T ss_dssp HHHHHHHH-----TSEEEEECCHHH---HHHHHTCGGGCCEEEEEECSCHHHH-------HHHHHHHCC
T ss_pred eeeehhhC-----CCEEEecCCHHH---HHHHHHhcccCceEEEEeCCCHHHH-------HHHHHhcCC
Confidence 22334443 356888876433 33343322 233344444456788 899998864
No 115
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.87 E-value=3.1e-06 Score=73.30 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR 99 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dllr 99 (219)
+++.|.|.|++||||||+++.|++.++ +++|++|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 567899999999999999999999887 89999999875
No 116
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.77 E-value=0.00014 Score=58.02 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
..+.|+||+||||||+.+.|+..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 357899999999999999999876
No 117
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.76 E-value=2.3e-05 Score=67.56 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
..|..++|.||||+|||++++.+|+.+|.+++.+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4556788899999999999999999999887755
No 118
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.74 E-value=1.8e-05 Score=67.10 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL 102 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~ 102 (219)
+.|.|+|++||||||+++.|.+.+|++++++++-+++++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~ 40 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL 40 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHH
Confidence 578999999999999999999999999999998877765
No 119
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.71 E-value=1.6e-05 Score=70.65 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchh
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dl 97 (219)
..|+|.||+||||||++..|++.++..+|++|++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 4789999999999999999999999999999886
No 120
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.67 E-value=8.2e-05 Score=70.06 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcC------CCeeccchh
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLE------VPHISMGSL 97 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg------~~~Is~~dl 97 (219)
++..|+|+|++||||||+++.|+..++ +.+++.+++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 567899999999999999999999884 334665554
No 121
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.64 E-value=3.2e-05 Score=68.10 Aligned_cols=35 Identities=31% Similarity=0.291 Sum_probs=31.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d 96 (219)
.+..|+|.||+||||||++..|+++++.++||.|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 45678899999999999999999999999999876
No 122
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.60 E-value=3.4e-05 Score=68.09 Aligned_cols=35 Identities=26% Similarity=0.158 Sum_probs=32.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchh
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dl 97 (219)
+..|+|.||+||||||++..|+++++..+||.|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 45788999999999999999999999999998875
No 123
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=97.60 E-value=8.9e-05 Score=64.93 Aligned_cols=106 Identities=9% Similarity=-0.096 Sum_probs=64.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCC---CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV---PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~---~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~ 137 (219)
..++.|+|.|..||||+|+.++|.+.++= .++.+. .|.++++. ..++...+..
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~----------~Pt~eE~~--------------~~yl~R~~~~ 139 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT----------KPTETERG--------------QWYFQRYVAT 139 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC----------SCCHHHHT--------------SCTTHHHHTT
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC----------CcChHHHh--------------chHHHHHHHh
Confidence 36899999999999999999999998844 344331 12122211 1122223333
Q ss_pred ccccCCCeEEEeCccCC------------HH-------HHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 138 GYYRGESGFILDGIPRT------------RI-------QAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 138 ~~~~~~~g~IlDG~Pr~------------~~-------qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
. ...+.-+|+|.+..+ .. +...|+. ...|++.|+|++++++. .+|+.+|
T Consensus 140 L-P~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq-------~kR~~~R 211 (304)
T 3czq_A 140 F-PTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQ-------LKRFHDR 211 (304)
T ss_dssp C-CCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHH-------HHHHHHH
T ss_pred c-ccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHH-------HHHHHHh
Confidence 2 123455788855321 11 1111211 23689999999999999 9999877
Q ss_pred CCCC
Q 027791 195 SLCL 198 (219)
Q Consensus 195 ~~~~ 198 (219)
...+
T Consensus 212 ~~dp 215 (304)
T 3czq_A 212 RHDP 215 (304)
T ss_dssp HHCT
T ss_pred hcCc
Confidence 5444
No 124
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.55 E-value=7.7e-05 Score=63.55 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
..+..++|+||||+|||++++.+++.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345569999999999999999999987
No 125
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.52 E-value=7.4e-05 Score=61.95 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
+.-++|+||||+|||++++.++++++.+++.+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 34588999999999999999999999887754
No 126
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=5.5e-05 Score=69.30 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+.-|+|+||||+|||++|+.+|.+++.+++.+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 456799999999999999999999999987755
No 127
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.50 E-value=8.3e-05 Score=62.02 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=26.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
-++|+||||+||||+++.++..++.+++.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 488999999999999999999998877654
No 128
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=6.5e-05 Score=68.88 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+.-|+|+||||+|||++|+.+|.+++++++.+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 456789999999999999999999999988754
No 129
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=6.9e-05 Score=68.54 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
+.-|+|+||||+|||++|+.+|.+++.+++.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 44589999999999999999999999988765
No 130
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.46 E-value=5.6e-05 Score=67.66 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~ 91 (219)
..+.|+|+|+|||||||+++.|++.+++++
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 345799999999999999999999999888
No 131
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=6.6e-05 Score=68.22 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
+.-|+|+||||+|||++|+.+|.+++.+++++
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 44589999999999999999999999988765
No 132
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.44 E-value=0.00011 Score=64.80 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
+..++|.||||+|||++|+.|++.++.+++.+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 44589999999999999999999999988865
No 133
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.43 E-value=9.5e-05 Score=58.79 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
.++..++|+||+||||||+++.|+..+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4566899999999999999999998763
No 134
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.41 E-value=0.001 Score=52.33 Aligned_cols=32 Identities=28% Similarity=0.222 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~ 95 (219)
++-.+.++|++||||||+++.+. .+..+++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d 39 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSD 39 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccH
Confidence 56788999999999999999854 344555543
No 135
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.41 E-value=0.0001 Score=62.62 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+..++|+||||+||||+++.+++.++.+++.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i 85 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNI 85 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 345689999999999999999999998776643
No 136
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.39 E-value=0.00011 Score=61.95 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
+..++|+||||+|||++++.+++.++.+++.+
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 34589999999999999999999999887654
No 137
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.39 E-value=0.00011 Score=63.29 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
+..++|+||||+||||+++.++..++.+++.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v 80 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQANFISI 80 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCCCEEEE
Confidence 45689999999999999999999998877755
No 138
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.37 E-value=0.00014 Score=61.29 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
..+..++|+||||+|||++++.+++.++.+++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 3556799999999999999999999999987755
No 139
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.36 E-value=0.00015 Score=57.25 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc----CC--CeeccchhHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL----EV--PHISMGSLVR 99 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l----g~--~~Is~~dllr 99 (219)
+..++|+||||+||||+++.++..+ |. .+++..+++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~ 80 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF 80 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 5678999999999999999999876 43 4455555443
No 140
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.35 E-value=0.00015 Score=62.93 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+..++|+||||+|||++++.++++++.+++.+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 345799999999999999999999998877754
No 141
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.34 E-value=0.0001 Score=67.03 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d 96 (219)
..|+|.||+||||||++..|+++++..+||+|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 568899999999999999999999999999876
No 142
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00011 Score=67.93 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+.-|+|+||||+|||++|+.+|.+++.+++.+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 456789999999999999999999999988755
No 143
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.00013 Score=66.85 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+.-|+|+||||+|||++|+.+|.+++.+++.+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 345699999999999999999999999987765
No 144
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.33 E-value=0.00016 Score=66.44 Aligned_cols=34 Identities=32% Similarity=0.453 Sum_probs=30.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~ 95 (219)
.+..|+|+||||+||||+++.||+.++.+++..+
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 3456999999999999999999999999998765
No 145
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.33 E-value=0.00015 Score=61.37 Aligned_cols=32 Identities=34% Similarity=0.491 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
+..++|+||||+|||++++.+++.++.+++.+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i 81 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34588999999999999999999998877644
No 146
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.30 E-value=0.00017 Score=63.66 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~ 95 (219)
+..++|+||||+|||++++.|++.++.+++..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 345899999999999999999999998887653
No 147
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.30 E-value=0.00017 Score=62.49 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC-------CCeeccchhH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV 98 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-------~~~Is~~dll 98 (219)
.++..|.|+|++||||||+++.|+..++ +.+|++++..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 4678899999999999999999999876 5667776643
No 148
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.30 E-value=0.00013 Score=68.09 Aligned_cols=28 Identities=18% Similarity=0.092 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
.++.|+|+|.+||||||+++.|+++++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 5588999999999999999999999986
No 149
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.28 E-value=0.00018 Score=61.40 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=25.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
++|+||||+||||+++.|+..++...+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i 75 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISV 75 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence 89999999999999999999998766544
No 150
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.24 E-value=0.00024 Score=54.93 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+..++|+|+||+|||++++.+++.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4458899999999999999999986
No 151
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.20 E-value=0.00011 Score=61.48 Aligned_cols=29 Identities=34% Similarity=0.566 Sum_probs=26.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
++|+||||+|||++++.++++++.+++.+
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 78999999999999999999998877654
No 152
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.19 E-value=0.00021 Score=55.40 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+..++|+|+||+||||+++.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999999987
No 153
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.18 E-value=0.00073 Score=62.90 Aligned_cols=107 Identities=12% Similarity=-0.099 Sum_probs=59.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCC---CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV---PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~---~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~ 137 (219)
..++.|+|.|..||||+|+.++|.+.++= .++.+.. |...+. + ...+.....+
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~----------Pt~~E~------~--------~~yl~R~~~~ 96 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLR----------PSDEEL------E--------RPPQWRFWRR 96 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSS----------CCHHHH------T--------SCTTHHHHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhhc------c--------CChhhhHHHh
Confidence 47799999999999999999999999844 3443311 111110 0 1122334444
Q ss_pred ccccCCCeEEEeCccC------------CHH-------HHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 138 GYYRGESGFILDGIPR------------TRI-------QAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 138 ~~~~~~~g~IlDG~Pr------------~~~-------qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
.. ..+.-+|+|.+.. +.+ +...|+. ...+++.++|+++.+.. .+|+.+|
T Consensus 97 lP-~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq-------~kRl~~R 168 (500)
T 3czp_A 97 LP-PKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQL-------KERLKAL 168 (500)
T ss_dssp CC-CTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHH-------HHCC---
T ss_pred CC-CCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHH-------HHHHHHH
Confidence 32 2334466675421 111 1111211 13578999999999999 9999998
Q ss_pred CCCCC
Q 027791 195 SLCLT 199 (219)
Q Consensus 195 ~~~~~ 199 (219)
...+.
T Consensus 169 ~~~p~ 173 (500)
T 3czp_A 169 EKDPQ 173 (500)
T ss_dssp -----
T ss_pred hcCCc
Confidence 76553
No 154
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.17 E-value=0.00028 Score=58.69 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=26.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
++|+||||+||||+++.++..++.+.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 89999999999999999999988776654
No 155
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.16 E-value=0.00027 Score=61.67 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc-CCCee--ccchhH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHI--SMGSLV 98 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l-g~~~I--s~~dll 98 (219)
.+.-|+|+||||+|||++++.+++++ +.+++ +..+++
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 34568899999999999999999998 66554 344443
No 156
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.14 E-value=0.00024 Score=62.72 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
+..|+|+||||+|||++++.+++.++.+++.+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 34588999999999999999999999887654
No 157
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.13 E-value=0.0003 Score=60.81 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC-------CCee-ccchhHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHI-SMGSLVR 99 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-------~~~I-s~~dllr 99 (219)
.++..|.|.|++||||||+++.|++.++ ...+ +.|+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~ 75 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL 75 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence 4678899999999999999999999875 3445 7777543
No 158
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.12 E-value=0.00034 Score=63.81 Aligned_cols=32 Identities=34% Similarity=0.493 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcC--CCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLE--VPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg--~~~Is~ 94 (219)
+..++|.||||+|||++|+.+|+.++ ++++.+
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 35689999999999999999999998 777654
No 159
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.11 E-value=0.00025 Score=57.33 Aligned_cols=37 Identities=11% Similarity=-0.059 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV 98 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dll 98 (219)
.+..++|.||||+||||+++.+++.++ +.+++..++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 456789999999999999999998764 3455555543
No 160
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.10 E-value=0.00037 Score=60.18 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~ 95 (219)
..++|+|+||+|||++++.+++.++.+++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 45899999999999999999999999887653
No 161
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.08 E-value=0.00028 Score=58.45 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d 96 (219)
-.+..|+|+||+|+||||++..|+++.+ .+|+.|.
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 3567799999999999999999998877 7777654
No 162
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.07 E-value=0.00036 Score=61.59 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+..++|+||||+|||++++.+++.++.+++.+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 455789999999999999999999999877644
No 163
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.07 E-value=0.00031 Score=56.30 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
+++.|+||+||||||+.+.|+..+++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 478999999999999999999988743
No 164
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.04 E-value=0.00043 Score=60.43 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~I 92 (219)
..++|+||||+||||+++.++..++.++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~ 80 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIH 80 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 45889999999999999999999987654
No 165
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.02 E-value=0.00045 Score=61.44 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+..++|+||||+|||++++.++++++.+++.+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 346799999999999999999999999887754
No 166
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.01 E-value=0.00047 Score=58.26 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=26.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
++|+||||+||||+++.|+..++.+.+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 89999999999999999999988776655
No 167
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.99 E-value=0.00045 Score=52.93 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=23.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHc---CCCee
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLL---EVPHI 92 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~l---g~~~I 92 (219)
.|+|.|+||+|||++|+.|++.. +.+++
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence 38999999999999999999865 44544
No 168
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.99 E-value=0.00068 Score=54.16 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
..++|.|+||+||||+++.++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999877
No 169
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.96 E-value=0.00064 Score=55.80 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
.++..|+|+||+||||||+.+.|.+.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3566789999999999999999998875
No 170
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.93 E-value=0.00065 Score=62.85 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=27.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
-++|+||||+||||+++.++.+.+.+++.+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 388999999999999999999999988765
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.91 E-value=0.00062 Score=63.04 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+..++|.||||+||||+++.+++.++++++.+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 345789999999999999999999999887754
No 172
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=96.91 E-value=0.00084 Score=62.52 Aligned_cols=106 Identities=8% Similarity=-0.035 Sum_probs=65.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~ 137 (219)
..++.|+|.|..||||+|+.++|.+.+ |+.++.+.. |...+ .....+...+.+
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~----------Pt~~E--------------~~~~yl~R~~~~ 353 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAA----------PTEEE--------------RAQPYLWRFWRH 353 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCS----------CCHHH--------------HTSCTTHHHHTT
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhh--------------hcchHHHHHHHh
Confidence 478999999999999999999999988 444444321 11111 111122334444
Q ss_pred ccccCCCeEEEeCccCC------------HH-------HHHHHH----hhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791 138 GYYRGESGFILDGIPRT------------RI-------QAVSLE----FCYTMALAFLFLFLYGCCVIIGSVILNEQVDG 194 (219)
Q Consensus 138 ~~~~~~~g~IlDG~Pr~------------~~-------qa~~l~----~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R 194 (219)
.. ..+.-+|+|.+..+ .+ +...|+ ..+.+++.++|+++.++. .+|+.+|
T Consensus 354 lP-~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ-------~~R~~~R 425 (500)
T 3czp_A 354 IP-ARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQ-------MERFKER 425 (500)
T ss_dssp CC-CTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHH-------HHHHHHH
T ss_pred CC-CCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHH-------HHHHHHH
Confidence 32 23455788854321 12 111121 113578999999999999 9999888
Q ss_pred CCCC
Q 027791 195 SLCL 198 (219)
Q Consensus 195 ~~~~ 198 (219)
...+
T Consensus 426 ~~~p 429 (500)
T 3czp_A 426 EKTP 429 (500)
T ss_dssp HHSS
T ss_pred hcCC
Confidence 6544
No 173
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.91 E-value=0.00044 Score=67.81 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.|.-|+|+||||+|||++++.+|.++|.+++.+
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 456799999999999999999999999988765
No 174
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.85 E-value=0.00056 Score=55.28 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
++..+.|+||+||||||+.+.|...+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345688999999999999999998763
No 175
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.84 E-value=0.00071 Score=61.59 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc-CCCee--ccchhHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHI--SMGSLVR 99 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l-g~~~I--s~~dllr 99 (219)
.+.-|+|+||||+|||++++.++..+ +.+++ +..+++.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 34678999999999999999999998 66554 4444443
No 176
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.82 E-value=0.0008 Score=57.11 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
..++|+||||+||||+++.|++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 368999999999999999999987
No 177
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.80 E-value=0.00045 Score=53.71 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++..++|+|++|+||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45578899999999999999999877
No 178
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.79 E-value=0.00083 Score=57.86 Aligned_cols=31 Identities=13% Similarity=-0.015 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc---CCCeec
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL---EVPHIS 93 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is 93 (219)
+..++|+||||+||||+++.++..+ +.+++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~ 70 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIY 70 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 3458899999999999999999987 665543
No 179
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.77 E-value=0.001 Score=53.04 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
..++|.|+||+||||+++.+++.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 46889999999999999999998754
No 180
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.77 E-value=0.00078 Score=57.51 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is 93 (219)
..++|.|+||+||||+++.+++.++.+++.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~~ 68 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRV 68 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 348899999999999999999999887653
No 181
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.76 E-value=0.00053 Score=56.32 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=17.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHH-HHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLS-KLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La-~~l 87 (219)
++..+.|+||+||||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45678999999999999999999 765
No 182
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.75 E-value=0.001 Score=57.91 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCC--Ceec
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEV--PHIS 93 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~--~~Is 93 (219)
+..++|.||||+|||++++.+++.++. +++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~ 102 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTA 102 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccCCccc
Confidence 467999999999999999999999874 5443
No 183
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.75 E-value=0.00095 Score=59.92 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is 93 (219)
.++..++|.|||||||||+++.|+..++..++.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 355688999999999999999999998877665
No 184
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.72 E-value=0.00068 Score=58.50 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=25.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is 93 (219)
.++|+||||+|||++++.+++.++.+++.
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~~ 76 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFHR 76 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 48999999999999999999999877653
No 185
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.71 E-value=0.00082 Score=55.90 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.-.++|.||||+||||+|..|++.+...+++.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~f 89 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVISF 89 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeE
Confidence 34589999999999999999999886655543
No 186
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.70 E-value=0.00094 Score=52.73 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l 87 (219)
++|+|+||+|||++++.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999876
No 187
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.66 E-value=0.0012 Score=60.34 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~ 95 (219)
..++|.||||+||||+++.|++.++.+++.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 46899999999999999999999988776553
No 188
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.66 E-value=0.0013 Score=57.29 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc-----------CCCeeccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----------EVPHISMG 95 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l-----------g~~~Is~~ 95 (219)
.+..++|.||||+||||+++.+++.+ +.+++.++
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 34579999999999999999999987 77666553
No 189
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.64 E-value=0.00085 Score=54.36 Aligned_cols=25 Identities=16% Similarity=0.027 Sum_probs=22.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEVPH 91 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~~~ 91 (219)
++|+|++||||||+|+.|++. +.++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~ 26 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQV 26 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCe
Confidence 789999999999999999987 7654
No 190
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.64 E-value=0.0012 Score=61.07 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+.-++|+||||+|||++++.++.+++.+++.+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 344589999999999999999999998877754
No 191
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.64 E-value=0.0009 Score=57.96 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+..++|+||||+||||+++.+++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999987
No 192
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.64 E-value=0.00038 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~~~Is 93 (219)
|+|.|+||+|||++|+.+++..+ +++.
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~-~~~~ 56 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT-PWVS 56 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS-CEEC
T ss_pred EEEECCCCccHHHHHHHHHHhCC-CeEE
Confidence 88999999999999999998776 4443
No 193
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.63 E-value=0.0012 Score=61.29 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=26.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
++|+||||+||||+++.|+..++.+++.+
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~~~i~i 95 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARVPFITA 95 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 89999999999999999999998877755
No 194
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.61 E-value=0.0011 Score=56.83 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~ 95 (219)
+..+++.||||+||||+++.+++.++.+++.++
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 345777888999999999999999988777553
No 195
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.60 E-value=0.0019 Score=50.82 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=25.1
Q ss_pred CCCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
...+....+|+|+|.+|+||||+..+|...
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 334456789999999999999999999764
No 196
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.59 E-value=0.0016 Score=59.59 Aligned_cols=26 Identities=38% Similarity=0.577 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
....++|+|+||+|||++++.|++.+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999997
No 197
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.58 E-value=0.0015 Score=52.80 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
.++-.+.|+||+||||||+.+.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4567889999999999999999998763
No 198
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.57 E-value=0.0014 Score=56.69 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc------CCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL------EVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l------g~~~Is~ 94 (219)
.+..++|+|+||+||||+++.+++.+ +.+++..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 44578899999999999999999987 6666644
No 199
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.57 E-value=0.0014 Score=61.36 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
++..++|+||||+||||+++.|+..++.+.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 566899999999999999999999987765543
No 200
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.56 E-value=0.0013 Score=53.88 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||+||||||+.+.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45678899999999999999999876
No 201
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.55 E-value=0.0012 Score=51.45 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=21.7
Q ss_pred CCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 58 SPPRRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 58 ~~~~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
..+.+..+|+|+|.+|+||||+..+|..
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhc
Confidence 3345778999999999999999999975
No 202
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.54 E-value=0.0016 Score=51.06 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=24.3
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 59 PPRRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
...+..+|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456789999999999999999999864
No 203
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.54 E-value=0.0017 Score=53.73 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
.++-.++|+||+||||||+.+.|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4567899999999999999999998764
No 204
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.51 E-value=0.0011 Score=65.13 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHhh
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQE 101 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~~ 101 (219)
.+.-++|+||||+|||.+|+.+|.+.+.+++++ .+++...
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTT
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccc
Confidence 345689999999999999999999999988865 4555544
No 205
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.48 E-value=0.0018 Score=51.31 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
....+|+|+|++||||||+.++++...
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 345789999999999999999998643
No 206
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.48 E-value=0.002 Score=56.23 Aligned_cols=27 Identities=26% Similarity=0.132 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..|.|.|++||||||+++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 567889999999999999999999876
No 207
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0011 Score=58.22 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..++|.||||+|||++++.+++++
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 356778999999999999999999988
No 208
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.43 E-value=0.0019 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLS 84 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La 84 (219)
++-.+.|+||+||||||+++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 56788899999999999999988
No 209
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.42 E-value=0.0026 Score=49.49 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
-+..+|+|+|++|+||||+..+|..
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568999999999999999999986
No 210
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.41 E-value=0.0021 Score=53.56 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcC
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
.++|+|+||+|||++++.+++..+
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTST
T ss_pred CEEEECCCCCcHHHHHHHHHHhcC
Confidence 488999999999999999998764
No 211
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.40 E-value=0.0026 Score=50.09 Aligned_cols=27 Identities=7% Similarity=0.036 Sum_probs=23.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
+.+..+|+|+|.+|+||||+..++...
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 356689999999999999999888764
No 212
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.40 E-value=0.0017 Score=63.54 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~ 95 (219)
.+..|+|+||||+||||+++.|+..++.+++.++
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 4567999999999999999999999988776553
No 213
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.39 E-value=0.0021 Score=51.77 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+||+||||||+++.|+-.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998744
No 214
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.39 E-value=0.0023 Score=51.25 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++..+.|.|++||||||++..|...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35578899999999999999999875
No 215
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.36 E-value=0.0026 Score=55.26 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
..++|+||||+||||+++.++..+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999988
No 216
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.34 E-value=0.0023 Score=51.19 Aligned_cols=27 Identities=22% Similarity=0.063 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
++-.++|.|+|||||||++..++...+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~ 45 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSG 45 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 566789999999999999999987433
No 217
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.32 E-value=0.0026 Score=51.08 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.++|+|+|||||||++..++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999998543
No 218
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.32 E-value=0.0034 Score=47.70 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..++...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999753
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.31 E-value=0.0028 Score=61.15 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc----------CCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL----------EVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l----------g~~~Is~ 94 (219)
.+..++|+||||+|||++++.|++.+ +..++..
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 44568999999999999999999997 6666655
No 220
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.29 E-value=0.0026 Score=49.95 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=23.8
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 59 PPRRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
...+..+|+|+|.+|+||||+..+|...
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcC
Confidence 3456789999999999999999999853
No 221
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.28 E-value=0.0026 Score=49.64 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=23.0
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 59 PPRRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+....+|+|+|.+|+||||+..+|...
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999999864
No 222
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.28 E-value=0.0029 Score=51.74 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.-+|+++++|+||||||+.+..+...
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 35689999999999999999886544
No 223
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.27 E-value=0.0028 Score=50.81 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+..++++|+||+||||.+..++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999997777665
No 224
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.27 E-value=0.0023 Score=55.03 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=21.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHcC
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg 88 (219)
++|+||||+||||+++.+++.++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999864
No 225
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.25 E-value=0.0016 Score=56.08 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHcC
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg 88 (219)
++|+|+||+|||++++.+++.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 89999999999999999999886
No 226
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.24 E-value=0.0026 Score=55.24 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHcCC
Q 027791 66 WVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
++|+||||+||||+++.++..+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 899999999999999999998743
No 227
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.23 E-value=0.0031 Score=47.72 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....+|+|+|.+|+||||+..+|...
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence 45689999999999999999999864
No 228
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.23 E-value=0.003 Score=49.39 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=22.7
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 59 PPRRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
...+..+|+|+|.+|+||||+..+|...
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3456789999999999999999999753
No 229
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.21 E-value=0.0035 Score=54.32 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcC----CCe--eccchhHHh
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLE----VPH--ISMGSLVRQ 100 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg----~~~--Is~~dllr~ 100 (219)
+..++|.||||+|||+++..++..+. .++ ++..+++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~ 195 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence 45788999999999999999998553 444 455555443
No 230
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.20 E-value=0.004 Score=48.94 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45678999999999999999999877
No 231
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.20 E-value=0.0032 Score=48.46 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhC
Confidence 45689999999999999999999864
No 232
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.19 E-value=0.0032 Score=53.31 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcC
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
.++|.||||+||||+++.+++.+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 489999999999999999999864
No 233
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.18 E-value=0.0035 Score=60.35 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=30.1
Q ss_pred CCCCe-EEEEEcCCCCChHHHHHHHHHHcCCCee--ccchhH
Q 027791 60 PRRGV-QWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLV 98 (219)
Q Consensus 60 ~~~~~-~Ivl~G~PGSGKST~a~~La~~lg~~~I--s~~dll 98 (219)
+.++. .++|+||||+|||++++.|++.++.+++ ++.++.
T Consensus 484 ~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~ 525 (758)
T 1r6b_X 484 EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM 525 (758)
T ss_dssp TTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhc
Confidence 33443 6899999999999999999999986655 444443
No 234
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.17 E-value=0.0034 Score=54.23 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=20.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l 87 (219)
++|+||+|+||||+++.|+..+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999965
No 235
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.17 E-value=0.0038 Score=54.02 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
+..++|.||||+||||+++.+++.++..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3468899999999999999999988653
No 236
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.15 E-value=0.0033 Score=50.32 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
..+..+|+|+|.+|+||||+..+|..
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhc
Confidence 35678999999999999999999875
No 237
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.15 E-value=0.0026 Score=49.83 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=22.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
..+..+|+|+|.+|+||||+..+|....
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999999987543
No 238
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.14 E-value=0.0033 Score=57.10 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+..++|+||||+||||+++.++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999977
No 239
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.12 E-value=0.0034 Score=51.03 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+|+|||||||++..|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5668899999999999999999984
No 240
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.12 E-value=0.0018 Score=63.42 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+..++|+||||+||||+++.|+..++.+++.+
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 542 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 445688999999999999999999997766544
No 241
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.11 E-value=0.0034 Score=48.97 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
-+..+|+|+|.+|+||||+..+|....
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCC
Confidence 356899999999999999999998653
No 242
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.11 E-value=0.0041 Score=48.92 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
+.+..+|+|+|.+|+||||+..+|...
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 356689999999999999999999764
No 243
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.10 E-value=0.0034 Score=50.77 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++.|+|++||||||+.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999999877
No 244
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.09 E-value=0.0035 Score=49.05 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=22.0
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 59 PPRRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 59 ~~~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+....+|+|+|.+|+||||+..+|..
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 346778999999999999999999864
No 245
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.08 E-value=0.0057 Score=46.83 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
..+..+|+|+|.+|+||||+..+|..
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35778999999999999999999975
No 246
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.07 E-value=0.0062 Score=47.22 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..+|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999999999875
No 247
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.07 E-value=0.0042 Score=46.65 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
..+|+|+|++|+||||+..++...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999999998764
No 248
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.03 E-value=0.0037 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=21.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l 87 (219)
++|+||||+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8999999999999999999986
No 249
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.01 E-value=0.0044 Score=46.39 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
..+|+++|.+|+||||+..++...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999999865
No 250
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.01 E-value=0.0045 Score=50.32 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.++|.|+||+||||++..++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999888764
No 251
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.01 E-value=0.0048 Score=53.68 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..|.|+|++||||||++..||..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 456788999999999999999999876
No 252
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.00 E-value=0.0043 Score=49.18 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..+|...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 56789999999999999999999864
No 253
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.00 E-value=0.0046 Score=48.60 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..++...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 46689999999999999999998764
No 254
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.99 E-value=0.0056 Score=46.87 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+..+|+|+|.+|+||||+..+|..
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHh
Confidence 4668999999999999999999975
No 255
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.99 E-value=0.0052 Score=53.99 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+||+||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999865
No 256
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.98 E-value=0.0044 Score=49.75 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.....+|+|+|.+|+||||+..+|...
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhC
Confidence 346689999999999999999999764
No 257
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.97 E-value=0.0054 Score=51.99 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+||+||||||+.+.|+..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 356689999999999999999998865
No 258
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.96 E-value=0.0046 Score=53.91 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I 92 (219)
.++-.+.|+||+||||||+++.|+..+...++
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~ 155 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVL 155 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHHTCEEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhcCceEE
Confidence 35678999999999999999999988744443
No 259
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.96 E-value=0.0053 Score=49.04 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
...+.|.|++||||||+.+.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4578899999999999999998864
No 260
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.95 E-value=0.0052 Score=49.13 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+..+|+|+|++|+||||+..+|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466889999999999999999998754
No 261
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.94 E-value=0.0056 Score=45.96 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++|+|+|++|+||||+..++....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998643
No 262
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.94 E-value=0.0052 Score=48.59 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=22.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
+.+..+|+|+|.+|+||||+..+|...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999999999753
No 263
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.92 E-value=0.0053 Score=46.97 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|++|+||||+..+|...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 45689999999999999999998764
No 264
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.91 E-value=0.0064 Score=46.48 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..+|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 46689999999999999999999875
No 265
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.91 E-value=0.0054 Score=46.72 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
...+|+|+|.+|+||||+..+|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 457899999999999999999874
No 266
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0058 Score=46.88 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
..+..+|+|+|.+|+||||+..+|...
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhC
Confidence 356789999999999999999999764
No 267
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.89 E-value=0.0048 Score=52.15 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=21.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHc
Q 027791 66 WVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 66 Ivl~G~PGSGKST~a~~La~~l 87 (219)
++|.||||+||||+++.+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999999986
No 268
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.89 E-value=0.0056 Score=46.73 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
....+|+|+|.+|+||||+..+|...-
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence 456899999999999999999998643
No 269
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.88 E-value=0.0054 Score=46.51 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....+|+|+|.+|+||||+..++...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 45689999999999999999999864
No 270
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.88 E-value=0.0068 Score=47.31 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.....+|+|+|.+|+||||+..+|...
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcC
Confidence 346689999999999999999999764
No 271
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.87 E-value=0.0053 Score=47.69 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++.+|+|+|.||+||||+..+|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999854
No 272
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.87 E-value=0.0058 Score=45.94 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
+..+|+|+|.+|+||||+..+|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999864
No 273
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.87 E-value=0.0055 Score=52.00 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.++|.|+||+||||++..|+-.+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56678999999999999999988754
No 274
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.0063 Score=47.51 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+..+|+|+|++|+||||+...|....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466899999999999999999998653
No 275
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.87 E-value=0.0068 Score=52.72 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~ 91 (219)
.+..++|.||||+||||+++.+++.+....
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 345699999999999999999999987654
No 276
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=95.86 E-value=0.013 Score=50.73 Aligned_cols=32 Identities=6% Similarity=0.039 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I 92 (219)
..++.|+|.|..||||+++.++|.+.++=..+
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~ 104 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGV 104 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGE
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCce
Confidence 47899999999999999999999999854333
No 277
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.86 E-value=0.0051 Score=47.05 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
....+|+|+|.+|+||||+..+|..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 4668999999999999999999864
No 278
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.84 E-value=0.0055 Score=47.04 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
..+|+|+|++|+||||+..+|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999975
No 279
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.84 E-value=0.0068 Score=58.49 Aligned_cols=41 Identities=27% Similarity=0.558 Sum_probs=30.2
Q ss_pred CCCCe-EEEEEcCCCCChHHHHHHHHHHc---CCC--eeccchhHHh
Q 027791 60 PRRGV-QWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVRQ 100 (219)
Q Consensus 60 ~~~~~-~Ivl~G~PGSGKST~a~~La~~l---g~~--~Is~~dllr~ 100 (219)
|.+|. .++|+||||+|||++|+.|++.+ +.+ .+++.++...
T Consensus 517 ~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 517 PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK 563 (758)
T ss_dssp TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence 34444 68999999999999999999986 334 4555555443
No 280
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.84 E-value=0.0062 Score=52.87 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||+||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56789999999999999999999766
No 281
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.84 E-value=0.0058 Score=48.38 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
...+|+|+|++|+||||+.++|...
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3478999999999999999999864
No 282
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.83 E-value=0.0069 Score=48.59 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+...|+|+|.+|+||||+..+|+..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999875
No 283
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.83 E-value=0.0059 Score=46.18 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
...+|+|+|++|+||||+..++...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHHhC
Confidence 3578999999999999999999753
No 284
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.82 E-value=0.0056 Score=47.24 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+..+|+|+|.+|+||||+..+|....
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCC
Confidence 56899999999999999999998643
No 285
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.81 E-value=0.0065 Score=47.36 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....+|+|+|.+|+||||+..+|...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 45689999999999999999999864
No 286
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.81 E-value=0.0044 Score=47.80 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La 84 (219)
.+..+|+|+|++|+||||+..++.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999999886
No 287
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.80 E-value=0.0068 Score=52.53 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+|+.||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 466789999999999999999999875
No 288
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.80 E-value=0.0057 Score=46.79 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|++|+||||+..++...
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcC
Confidence 35679999999999999999999754
No 289
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.80 E-value=0.0066 Score=46.87 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....+|+|+|.+|+||||+..+|...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999863
No 290
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.79 E-value=0.0065 Score=45.80 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
..+|+|+|.+|+||||+..++...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999999999863
No 291
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.79 E-value=0.0066 Score=47.41 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
|....+|+|+|++|+||||+..++...
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999998754
No 292
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.78 E-value=0.007 Score=50.39 Aligned_cols=27 Identities=15% Similarity=-0.103 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..++++|+||+||||.+-.++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 456789999999999999999988877
No 293
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.77 E-value=0.0041 Score=49.19 Aligned_cols=28 Identities=11% Similarity=-0.052 Sum_probs=21.6
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 59 PPRRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+.+..+|+|+|.+|+||||+.+++..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc
Confidence 3467789999999999999999887654
No 294
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.76 E-value=0.0057 Score=48.16 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
....+|+|+|.+|+||||+..+|..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999864
No 295
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0065 Score=45.94 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
+..+|+|+|.+|+||||+..+|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 357899999999999999999975
No 296
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.75 E-value=0.005 Score=46.50 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..+|...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC
Confidence 35679999999999999999999863
No 297
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.75 E-value=0.0059 Score=46.06 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
..+|+|+|++|+||||+..++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999764
No 298
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.74 E-value=0.0095 Score=46.14 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....+|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 45678999999999999999999764
No 299
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.74 E-value=0.0061 Score=46.51 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..+|...
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcC
Confidence 35589999999999999999999753
No 300
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.73 E-value=0.0066 Score=46.59 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....+|+|+|.+|+||||+..+|...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 45689999999999999999999764
No 301
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.72 E-value=0.0063 Score=46.01 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLS 84 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La 84 (219)
..+|+|+|.+|+||||+..++.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999985
No 302
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.72 E-value=0.0078 Score=48.44 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+..+|+|+|.+|+||||+..+|+..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999875
No 303
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.71 E-value=0.0056 Score=51.01 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+||.||||||+.+.|+-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 5567899999999999999999753
No 304
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.71 E-value=0.0065 Score=45.96 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+..+|+|+|++|+||||+..+|....
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 55799999999999999999998653
No 305
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.70 E-value=0.0074 Score=52.12 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..+.|+|++|+||||++..|+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356788899999999999999999755
No 306
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.69 E-value=0.0088 Score=46.15 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45689999999999999999999864
No 307
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.68 E-value=0.0084 Score=48.65 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+..+|+|+|.+|+||||+..+|..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999865
No 308
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.66 E-value=0.0067 Score=49.74 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
...++|+|+|.+|+||||+...|...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 45689999999999999999998753
No 309
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.66 E-value=0.0095 Score=47.19 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....+|+|+|.+|+||||+..++...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 46689999999999999999999864
No 310
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.65 E-value=0.0092 Score=51.17 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
.-.++|.||||+|||+++..|+..++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 345899999999999999999997543
No 311
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.63 E-value=0.0067 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.|+|+|+||+|||++|+.|++..
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHS
T ss_pred cEEEECCCCchHHHHHHHHHHhC
Confidence 48899999999999999999854
No 312
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.62 E-value=0.0079 Score=45.61 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+|+|+|.+|+||||+..++..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999863
No 313
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.61 E-value=0.0062 Score=50.32 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+||.||||||+.+.|+-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557889999999999999999753
No 314
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.61 E-value=0.0067 Score=53.42 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
+.++.|+|++||||||+++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6789999999999999999999987654
No 315
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.60 E-value=0.0064 Score=53.72 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc--CCCeecc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISM 94 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l--g~~~Is~ 94 (219)
+..++|.||||+||||++..++... .+.+++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 3457899999999999999999764 3557776
No 316
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.60 E-value=0.0076 Score=47.93 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....+|+|+|.+|+||||+..+|...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 45689999999999999999999753
No 317
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.58 E-value=0.0062 Score=47.59 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+|+|+|++|+||||+..++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999975
No 318
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.58 E-value=0.0071 Score=51.00 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+|+|||||||++..++..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678899999999999999999864
No 319
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.57 E-value=0.0091 Score=54.54 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..|+++|++||||||++..|+..+
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357888999999999999999999765
No 320
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.57 E-value=0.0094 Score=52.30 Aligned_cols=27 Identities=37% Similarity=0.526 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..+.|+|+|||||||+.+.|+..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998654
No 321
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.57 E-value=0.0073 Score=47.91 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
....+|+|+|.+|+||||+..+|..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 4678999999999999999999864
No 322
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.56 E-value=0.007 Score=51.51 Aligned_cols=32 Identities=16% Similarity=-0.048 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~ 95 (219)
..++|.|++|+||||+++.+++..++.+++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~ 63 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCR 63 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence 46889999999999999999999875566543
No 323
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.56 E-value=0.0093 Score=52.46 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+..+|.|+|+||+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998875
No 324
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.54 E-value=0.007 Score=50.45 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+||.||||||+.+.|+-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5567899999999999999999754
No 325
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.54 E-value=0.006 Score=59.79 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+..++|+|+||+||||+++.+++++
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999987
No 326
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.53 E-value=0.0098 Score=52.40 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
....|.|+|+|||||||+...|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998753
No 327
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.52 E-value=0.0092 Score=46.51 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45689999999999999999999753
No 328
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.51 E-value=0.0084 Score=47.24 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|++|+||||+..++...
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999863
No 329
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.51 E-value=0.0099 Score=48.15 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~ 95 (219)
.+.-|+|.|++|+||||++..|.+ .|...++-|
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD 47 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID-RGHQLVCDD 47 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH-TTCEEEESS
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCC
Confidence 456799999999999999999987 577776543
No 330
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.0045 Score=48.55 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
...++|+|+|.+|+||||+..+|...-
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 466899999999999999999998754
No 331
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.49 E-value=0.0081 Score=50.14 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998644
No 332
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.49 E-value=0.0083 Score=46.33 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..+|...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 45689999999999999999999764
No 333
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.48 E-value=0.01 Score=45.66 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
+..+|+|+|.+|+||||+..++...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 5679999999999999999999753
No 334
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.46 E-value=0.014 Score=53.52 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+|..|+|.|++|+||||++..||..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 335
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.46 E-value=0.0053 Score=48.69 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.++.+|+|+|++||||||+.+.|..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4667899999999999999998864
No 336
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.46 E-value=0.0081 Score=58.87 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=23.9
Q ss_pred CCCC-eEEEEEcCCCCChHHHHHHHHHHc
Q 027791 60 PRRG-VQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 60 ~~~~-~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
|.+| ..++|+||||+|||++|+.|++.+
T Consensus 584 ~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 584 PNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp SSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344 378899999999999999999987
No 337
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.45 E-value=0.011 Score=52.69 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.+.|+|+.||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 467789999999999999999999876
No 338
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.45 E-value=0.011 Score=46.40 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..+|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45689999999999999999999864
No 339
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.43 E-value=0.0087 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
-.+.|+||.||||||+.+.|+-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999998543
No 340
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.43 E-value=0.0082 Score=50.84 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55678899999999999999998543
No 341
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.42 E-value=0.01 Score=46.00 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..++...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999753
No 342
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.41 E-value=0.013 Score=49.22 Aligned_cols=35 Identities=20% Similarity=0.079 Sum_probs=27.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCe--eccc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPH--ISMG 95 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~--Is~~ 95 (219)
...++|++.|+||+||||++-.++..+ |..+ ++++
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 345789999999999999988888765 5544 3553
No 343
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.41 E-value=0.011 Score=44.54 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+|+|+|.+|+||||+..++...-
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999999997643
No 344
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.41 E-value=0.011 Score=46.63 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
....+|+|+|.+|+||||+..+|....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC
Confidence 466899999999999999999997643
No 345
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.41 E-value=0.0061 Score=56.59 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcC
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
.++|+||||+|||++++.|+..++
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 589999999999999999999774
No 346
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.40 E-value=0.0098 Score=47.72 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....+|+|+|.+|+||||+..+|...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 46689999999999999999999874
No 347
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.40 E-value=0.011 Score=45.27 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..++...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 45689999999999999999999764
No 348
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.39 E-value=0.014 Score=48.07 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+...+++.|.+|+||||++..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 466788999999999999999999765
No 349
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.39 E-value=0.01 Score=45.95 Aligned_cols=27 Identities=11% Similarity=-0.039 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
....+|+|+|.+|+||||+.+.+...+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence 456899999999999999998887654
No 350
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.013 Score=45.64 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
....+|+|+|.+|+||||+..+|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 3568999999999999999999976
No 351
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.38 E-value=0.053 Score=46.87 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+.++|.||||+||||.++.|++..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 5689999999999999999999864
No 352
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.37 E-value=0.0084 Score=50.97 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+||.||||||+.+.|+-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4567889999999999999999754
No 353
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.37 E-value=0.011 Score=50.29 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+||.||||||+.+.|+-.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5567899999999999999999863
No 354
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.37 E-value=0.0068 Score=49.66 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
+-.+.|+||.||||||+.+.|+-.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999999853
No 355
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.35 E-value=0.0096 Score=46.56 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 35679999999999999999999865
No 356
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.35 E-value=0.0082 Score=51.39 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45678899999999999999997543
No 357
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.35 E-value=0.009 Score=50.78 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 55678899999999999999998543
No 358
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.34 E-value=0.0049 Score=49.11 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
..+.|+|++||||||+++.|...|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999876
No 359
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.34 E-value=0.01 Score=49.77 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+|+.||||||+.+.|+-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557889999999999999999863
No 360
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.34 E-value=0.012 Score=52.45 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.++|+||+||||||+.+.|+..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45679999999999999999999865
No 361
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.33 E-value=0.012 Score=45.73 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+..+|+|+|.+|+||||+..+|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999984
No 362
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.33 E-value=0.012 Score=46.42 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+..+|+|+|.+|+||||+..++..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 5678999999999999999999853
No 363
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.33 E-value=0.012 Score=46.49 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....+|+|+|.+|+||||+..+|...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999999999753
No 364
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.30 E-value=0.012 Score=47.32 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..+|...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 46689999999999999999999764
No 365
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.29 E-value=0.0094 Score=50.40 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 55688999999999999999998644
No 366
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.29 E-value=0.013 Score=47.55 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
++-.++|.|+||+|||++|..++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 566888999999999999988764
No 367
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.29 E-value=0.0091 Score=49.81 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578899999999999999998543
No 368
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.29 E-value=0.009 Score=50.34 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55678899999999999999997543
No 369
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.29 E-value=0.0091 Score=50.12 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999997643
No 370
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.29 E-value=0.011 Score=46.84 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+..+|+|+|++|+||||+..++..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999864
No 371
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.29 E-value=0.0093 Score=45.92 Aligned_cols=25 Identities=12% Similarity=0.128 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
+..+|+|+|.+|+||||+..+|...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 5679999999999999999999853
No 372
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.28 E-value=0.0095 Score=50.72 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55678999999999999999997644
No 373
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.27 E-value=0.0098 Score=50.29 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 55678899999999999999997543
No 374
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.26 E-value=0.011 Score=52.06 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|+|||||||++..++-..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 66789999999999999999999876
No 375
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.26 E-value=0.0097 Score=49.28 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55678999999999999999998643
No 376
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.25 E-value=0.012 Score=46.18 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=21.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
+.+..+|+|+|.+|+||||+..++..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 45778999999999999999999874
No 377
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.25 E-value=0.011 Score=49.23 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+.++|+|+|.||+||||+...|...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCC
Confidence 46789999999999999999998653
No 378
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.25 E-value=0.015 Score=47.15 Aligned_cols=32 Identities=13% Similarity=-0.109 Sum_probs=26.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCee
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHI 92 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~I 92 (219)
.++..++++|++||||||.+-.++.++ |..++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~ 40 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQ 40 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 346789999999999999999999887 55444
No 379
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.23 E-value=0.0085 Score=49.38 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568899999999999999997543
No 380
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.23 E-value=0.0095 Score=45.73 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
+..+|+|+|.+|+||||+..++...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 5689999999999999999999864
No 381
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.20 E-value=0.013 Score=52.16 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+|||||||||++..++..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999998764
No 382
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.19 E-value=0.012 Score=46.16 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 45689999999999999999999764
No 383
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.19 E-value=0.012 Score=46.02 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..++...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 46689999999999999999999874
No 384
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.18 E-value=0.011 Score=45.70 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+|+|+|.+|+||||+..++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 57999999999999999999753
No 385
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.17 E-value=0.014 Score=56.22 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+..++|+|+||+|||++++.|++.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999987
No 386
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.17 E-value=0.01 Score=51.11 Aligned_cols=25 Identities=12% Similarity=-0.118 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|.|+||+||||++..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999875
No 387
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.16 E-value=0.014 Score=54.26 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-.|.|+|++||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 467889999999999999999999765
No 388
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.16 E-value=0.011 Score=50.11 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 55678899999999999999997543
No 389
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.012 Score=45.58 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..+|...
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 35579999999999999999999764
No 390
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.14 E-value=0.011 Score=49.81 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45578899999999999999987543
No 391
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.12 E-value=0.015 Score=45.76 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 35679999999999999999998753
No 392
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.11 E-value=0.011 Score=50.62 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45678899999999999999998543
No 393
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.09 E-value=0.014 Score=46.80 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+..+|+|+|.+|+||||+..+|..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 4568999999999999999999974
No 394
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.06 E-value=0.017 Score=50.50 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..|.|+|++|+||||++..||..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456788899999999999999999866
No 395
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.06 E-value=0.015 Score=46.32 Aligned_cols=27 Identities=11% Similarity=-0.071 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+..+|+|+|.+|+||||+..+|....
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998643
No 396
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.03 E-value=0.012 Score=49.60 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+||.||||||+.+.|+-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557889999999999999999754
No 397
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.01 E-value=0.016 Score=48.01 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..+|...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 45689999999999999999999753
No 398
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.01 E-value=0.015 Score=48.80 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
..+|+|+|+||+||||+..+|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999753
No 399
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.01 E-value=0.012 Score=46.78 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La 84 (219)
....+|+|+|.+|+||||+..++.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999999985
No 400
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.00 E-value=0.012 Score=55.39 Aligned_cols=26 Identities=31% Similarity=0.604 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
..++|+||||+||||+++.|+..+..
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 46899999999999999999997753
No 401
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.99 E-value=0.018 Score=50.44 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..|.++|+||+||||+...|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998754
No 402
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.98 E-value=0.017 Score=45.98 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..++...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 46689999999999999999999863
No 403
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.98 E-value=0.019 Score=48.80 Aligned_cols=27 Identities=15% Similarity=0.041 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVP 90 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~ 90 (219)
..++|.|++|+||||+++.++++.+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~ 57 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLP 57 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 378899999999999999999987543
No 404
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.96 E-value=0.019 Score=50.99 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc----CCCeeccchh
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL----EVPHISMGSL 97 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l----g~~~Is~~dl 97 (219)
-.++|+||+||||||+.+.|+..+ +..++..+|-
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~ 161 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP 161 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc
Confidence 489999999999999999998765 3444555443
No 405
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.94 E-value=0.011 Score=52.31 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
++-.+.|+|+.||||||+.+.|+..+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445889999999999999999998763
No 406
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.93 E-value=0.015 Score=45.94 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 45689999999999999999999763
No 407
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.90 E-value=0.016 Score=51.13 Aligned_cols=34 Identities=18% Similarity=0.052 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~ 95 (219)
++-.+.|.|+|||||||++..++... .+.+|+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 56688899999999999999998654 34455553
No 408
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.89 E-value=0.014 Score=46.51 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
...+|+|+|.+|+||||+..+|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 4579999999999999999999863
No 409
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.88 E-value=0.016 Score=51.60 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+||.||||||+.+.|+-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4567889999999999999999854
No 410
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.88 E-value=0.013 Score=53.28 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++..|.|+|+||+||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999875
No 411
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.88 E-value=0.017 Score=51.39 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+||||||+++.+.--
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~ 56 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRII 56 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999999999998433
No 412
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.88 E-value=0.022 Score=49.95 Aligned_cols=25 Identities=12% Similarity=-0.040 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|.|+|||||||++..++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6778899999999999999999986
No 413
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.86 E-value=0.018 Score=46.88 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
....+|+|+|.||+||||+..++..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3557899999999999999999874
No 414
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.79 E-value=0.018 Score=51.21 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+||.||||||+.+.|+--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 4567889999999999999999854
No 415
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.79 E-value=0.017 Score=50.55 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.1
Q ss_pred CCeEEEE--EcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVL--IGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl--~G~PGSGKST~a~~La~~l 87 (219)
.+..++| .|+||+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3456777 9999999999999999876
No 416
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.79 E-value=0.016 Score=48.62 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+..+|+|+|.||+||||+..+|..
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHC
Confidence 4568899999999999999999975
No 417
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.78 E-value=0.014 Score=45.40 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La 84 (219)
.+..+|+|+|.+|+||||+..++.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999884
No 418
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.015 Score=53.35 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++.++.|+||.||||||+++.|+-.+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 56789999999999999999998754
No 419
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.74 E-value=0.021 Score=45.76 Aligned_cols=29 Identities=28% Similarity=0.515 Sum_probs=23.5
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHH-HHHHc
Q 027791 59 PPRRGVQWVLIGDPGVKKHVYADN-LSKLL 87 (219)
Q Consensus 59 ~~~~~~~Ivl~G~PGSGKST~a~~-La~~l 87 (219)
.+....+|+|+|.+|+||||+..+ +...+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 345678999999999999999998 54443
No 420
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.74 E-value=0.019 Score=51.52 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+--+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45678899999999999999998543
No 421
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.73 E-value=0.02 Score=51.05 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+||.||||||+.+.|+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4567889999999999999999854
No 422
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.71 E-value=0.02 Score=53.17 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..|.|+|+||+||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999765
No 423
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.70 E-value=0.024 Score=44.93 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+..++...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 35689999999999999999999864
No 424
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.70 E-value=0.018 Score=48.92 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
..+.|+|++||||||+.+.|+..+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999765
No 425
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.70 E-value=0.024 Score=51.37 Aligned_cols=27 Identities=15% Similarity=-0.021 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
++-.++|+||+||||||+.+.|...+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 445789999999999999999998774
No 426
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.69 E-value=0.0071 Score=57.20 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=24.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~I 92 (219)
..++|+||||+|||++++.+++.++...+
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~ 356 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRAVY 356 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCEEC
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCcee
Confidence 46999999999999999999998764433
No 427
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.68 E-value=0.022 Score=45.01 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
...+|+|+|.||+||||+..++...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999854
No 428
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.67 E-value=0.021 Score=51.10 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+||.||||||+.+.|+-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 5567889999999999999999854
No 429
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.64 E-value=0.022 Score=49.39 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|.|+||+||||++..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 56688999999999999999999764
No 430
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.64 E-value=0.018 Score=48.93 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+-.+.|+||.||||||+.+.|+-.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999998543
No 431
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.63 E-value=0.011 Score=45.51 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=12.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....+|+|+|.+|+||||+..++...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp SEEEEEEEECCCCC------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35689999999999999999998743
No 432
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.62 E-value=0.02 Score=50.85 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+||.||||||+.+.|+-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4567889999999999999999853
No 433
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.58 E-value=0.018 Score=49.57 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+|+.||||||+.+.|+-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 5567889999999999999999754
No 434
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.56 E-value=0.02 Score=51.62 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+|+|||||||++..|+-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 5678899999999999999988743
No 435
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.47 E-value=0.023 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+||.||||||+.+.|+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 4557889999999999999999854
No 436
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.43 E-value=0.025 Score=50.49 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+||.||||||+.+.|+--
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 5567889999999999999999753
No 437
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.43 E-value=0.026 Score=50.09 Aligned_cols=33 Identities=12% Similarity=0.039 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~ 94 (219)
++..++|.|+||+||||+|..++... .+.+|+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 56678899999999999999998754 3445655
No 438
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.42 E-value=0.03 Score=43.58 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHcCC
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLLEV 89 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~lg~ 89 (219)
..+|+|+.||||||+.+.|.-.++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6789999999999999999876653
No 439
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.39 E-value=0.017 Score=51.25 Aligned_cols=25 Identities=20% Similarity=0.535 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+||.||||||+.+.|+-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 4567889999999999999999853
No 440
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.38 E-value=0.028 Score=45.27 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....+|+|+|.+|+||||+..+|...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence 45689999999999999999999763
No 441
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.37 E-value=0.03 Score=48.31 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++..+.+.|++|+||||++..|+..+
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36788889999999999999999766
No 442
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.35 E-value=0.026 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.309 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
++-.+.|+||.||||||+.+.|+-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 566889999999999999999985
No 443
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.32 E-value=0.033 Score=47.86 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++..+.|+|++|+||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56778888999999999999999765
No 444
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.29 E-value=0.0067 Score=47.92 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La 84 (219)
....+|+|+|.+|+||||+..+|.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSB
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 456899999999999999998775
No 445
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.24 E-value=0.015 Score=50.55 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|+||.||||||+.+.|+..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 55688999999999999999998654
No 446
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.18 E-value=0.036 Score=47.91 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.++|.|+||+||||++..++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999998754
No 447
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.15 E-value=0.03 Score=50.77 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHc
Q 027791 65 QWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++|.|+||+||||++..+++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78899999999999999998876
No 448
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.14 E-value=0.036 Score=50.39 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++..|+|.|++|+||||++..||..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356788888999999999999999765
No 449
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.13 E-value=0.031 Score=49.29 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=22.8
Q ss_pred CCCCCCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
|..+. + .+.|.|+||+||||++..++...
T Consensus 24 GGl~~-G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 24 GGMQS-G-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp CCBCS-E-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCCcC-C-eEEEECCCCCCHHHHHHHHHHHH
Confidence 44553 4 68999999999999988877643
No 450
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.12 E-value=0.018 Score=50.39 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+-.+.|+|++||||||+.+.|+..+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998766
No 451
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.07 E-value=0.037 Score=45.27 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=21.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
|-+..+|+|+|.+|+|||++..++..
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHh
Confidence 44567999999999999999999875
No 452
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.06 E-value=0.034 Score=47.19 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
..+|+|+|.||+||||+..+|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999999753
No 453
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.03 E-value=0.018 Score=46.01 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
...++|+|+|.+|+||||+..+|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35678999999999999999998764
No 454
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.02 E-value=0.032 Score=49.61 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
+-.+.|+|++|+||||+...|+-.
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCEEEEECCCCccHHHHHHHHhcc
Confidence 457899999999999999999743
No 455
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.97 E-value=0.017 Score=51.16 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++-.+.|+||.||||||+.+.|+-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4567889999999999999999853
No 456
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.92 E-value=0.036 Score=47.71 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+..+.|+|++|+||||+.+.|+ .+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 34678899999999999999998 44
No 457
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.92 E-value=0.022 Score=52.88 Aligned_cols=26 Identities=8% Similarity=0.239 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.+..++|+||+||||||+.+.|+..+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34569999999999999999998765
No 458
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.91 E-value=0.049 Score=45.14 Aligned_cols=32 Identities=16% Similarity=-0.064 Sum_probs=26.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCee
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHI 92 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~I 92 (219)
.++...+++|++||||||.+-.++.++ |..++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVl 60 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAI 60 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 456788899999999999999998877 55544
No 459
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.88 E-value=0.033 Score=48.18 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
+...++|+|+.||||||+.+.|...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3467889999999999999999864
No 460
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.87 E-value=0.034 Score=47.74 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+..+|.|+|+||+||||+..+|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHC
Confidence 3556899999999999999999975
No 461
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.86 E-value=0.042 Score=49.84 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.++|.|+||+||||++..++...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 55688999999999999999988743
No 462
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.83 E-value=0.013 Score=45.86 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=7.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....+|+|+|.+|+||||+..+|...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEEC-----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 35579999999999999999988754
No 463
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.75 E-value=0.041 Score=51.41 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+.++-.+.|+||.||||||+.+.|+-.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4677889999999999999999998643
No 464
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.72 E-value=0.041 Score=49.85 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+..+.|+|++||||||+.+.|+-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 345899999999999999999986
No 465
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.69 E-value=0.043 Score=51.64 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
...++|.|+||+||||+...+...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999998754
No 466
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.66 E-value=0.038 Score=51.11 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNL 83 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~L 83 (219)
++-.+.|+|++||||||+++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 6678999999999999999994
No 467
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.66 E-value=0.039 Score=46.28 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
++|+|+|.||+||||+...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47899999999999999999754
No 468
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.64 E-value=0.046 Score=46.15 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
..+|+|+|.||+||||+..+|...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999754
No 469
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.57 E-value=0.035 Score=47.65 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 027791 63 GVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 63 ~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
+..+.|+|++||||||+.+.|+-
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHST
T ss_pred CCeEEEECCCCCcHHHHHHHhcc
Confidence 45788999999999999999864
No 470
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.55 E-value=0.042 Score=47.22 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
|.++-.|.|+|.||+||||+..+|..
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhC
Confidence 34566899999999999999999875
No 471
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.53 E-value=0.051 Score=47.54 Aligned_cols=32 Identities=28% Similarity=0.275 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~ 94 (219)
.+.-++|.|++|+||||++..|.++ |...++-
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~d 174 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVAD 174 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecC
Confidence 4567999999999999999999764 7777644
No 472
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.51 E-value=0.019 Score=45.82 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
....+|+|+|.+|+||||+..+|..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999998873
No 473
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.51 E-value=0.048 Score=46.80 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
...+|+|+|.||+||||+..++...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999998654
No 474
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.60 E-value=0.013 Score=46.27 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.+..+|+|+|.+|+||||+..++..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4678999999999999999988864
No 475
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=93.48 E-value=0.048 Score=47.35 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=22.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
..+..+|+|+|.+|+||||+..+|..
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCS
T ss_pred ccCcceEEEECCCCccHHHHHHHHhC
Confidence 34667999999999999999998854
No 476
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.47 E-value=0.049 Score=48.97 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
.++.++.|+|+||+||||+.+.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4678999999999999999999987
No 477
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.47 E-value=0.048 Score=48.49 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~ 95 (219)
++-.++|.|+||+||||+|..++... .+.+|+++
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45678889999999999999988754 34555554
No 478
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.46 E-value=0.055 Score=47.71 Aligned_cols=27 Identities=15% Similarity=0.136 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
++-++.|+|++|+||||+.+.|+....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567899999999999999999998764
No 479
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.45 E-value=0.052 Score=48.96 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....++.|+|+||+||||+..+|...
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999999999754
No 480
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.42 E-value=0.046 Score=45.81 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
...++|+|+|.||+||||+..+|...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 35578999999999999999999753
No 481
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.41 E-value=0.046 Score=50.50 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.|.|++||||||+++.++...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 55688999999999999999998654
No 482
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.41 E-value=0.057 Score=49.10 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++..|.|.|++|+||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56778888999999999999999876
No 483
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.36 E-value=0.041 Score=47.32 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~ 85 (219)
-...|.|+|++|+||||+.+.|..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999999763
No 484
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.33 E-value=0.045 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHH
Q 027791 65 QWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 65 ~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+.|+|++||||||+.+.|+-.
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3899999999999999999754
No 485
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.31 E-value=0.064 Score=45.43 Aligned_cols=26 Identities=19% Similarity=0.136 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
...++|+|+|.||+||||+...|...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 34578999999999999999999753
No 486
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=93.31 E-value=0.082 Score=43.92 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCC---------CCChHHHHHHHHH
Q 027791 61 RRGVQWVLIGDP---------GVKKHVYADNLSK 85 (219)
Q Consensus 61 ~~~~~Ivl~G~P---------GSGKST~a~~La~ 85 (219)
.+..+|+|+|.+ |+||||+..++..
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 466899999999 9999999999985
No 487
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.26 E-value=0.053 Score=50.58 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
.++-++.|+|+.||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998643
No 488
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.17 E-value=0.04 Score=58.83 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLV 98 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dll 98 (219)
.++..++|+||||+|||++|..++.+- .+.+|++.+.+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence 467789999999999999999997764 33467665543
No 489
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.09 E-value=0.065 Score=48.42 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.++|.|+||+||||++..++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56688899999999999999988753
No 490
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.07 E-value=0.066 Score=48.70 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg 88 (219)
++-++.|+|++||||||+.+.|+..+.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 556899999999999999999998764
No 491
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.02 E-value=0.065 Score=44.81 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.+..+|+|+|.+|+||||+...|...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999999999753
No 492
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.96 E-value=0.059 Score=50.47 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.++||.||||||+.+.|+..+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45688999999999999999998765
No 493
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.88 E-value=0.065 Score=46.92 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
.....|+|+|+||+||||+...|+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999754
No 494
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.87 E-value=0.053 Score=50.77 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
++-.+.++||.||||||+.+.|+..+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 45688999999999999999998755
No 495
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.86 E-value=0.075 Score=50.42 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 60 ~~~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
+.++-.+.|+||.||||||+.+.|+-.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4677889999999999999999998644
No 496
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=92.80 E-value=0.46 Score=40.79 Aligned_cols=104 Identities=11% Similarity=0.053 Sum_probs=53.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcC-CCeeccchhHHhhcCC---Cc----h-hHHHHHHHHHcCCcc----------
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-VPHISMGSLVRQELSP---RS----A-LYKQIANAVNEGKLV---------- 122 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg-~~~Is~~dllr~~~~~---~s----~-lg~~i~~~l~~g~~i---------- 122 (219)
.+..|+|+|| ||+|+.++|.+.+. -..++....-|....+ +. . .-++....+.+|..+
T Consensus 104 ~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~Y 180 (295)
T 1kjw_A 104 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLY 180 (295)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcEe
Confidence 4456888898 79999999998763 1112222222322111 10 0 123445556666543
Q ss_pred --cHHHHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeC-hhhh
Q 027791 123 --PEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFL-YGCC 180 (219)
Q Consensus 123 --p~e~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~-~e~l 180 (219)
+.+.+..+ +.+ +..+|+|.-+....+... ....| .+|++..| .+.+
T Consensus 181 Gt~~~~V~~~----~~~-----G~~vildid~~g~~~l~~--~~~~p-i~IfI~pps~~~L 229 (295)
T 1kjw_A 181 GTSVQSVREV----AEQ-----GKHCILDVSANAVRRLQA--AHLHP-IAIFIRPRSLENV 229 (295)
T ss_dssp EEEHHHHHHH----HHT-----TCEEEECCCTTHHHHHHH--TTCCC-EEEEECCSSHHHH
T ss_pred eeeHHHHHHH----Hhc-----CCeEEEEeCHHHHHHHHh--cccCC-eEEEEECCCHHHH
Confidence 33333333 332 457899976544333322 11235 78888876 4444
No 497
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.80 E-value=0.065 Score=47.32 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
....++|+|++||||||+.+.+...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 44568899999999999999988753
No 498
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.79 E-value=0.057 Score=43.61 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHc
Q 027791 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (219)
Q Consensus 64 ~~Ivl~G~PGSGKST~a~~La~~l 87 (219)
|+|.|.|..|+||||++..||..+
T Consensus 1 mkI~vs~kGGvGKTt~a~~LA~~l 24 (254)
T 3kjh_A 1 MKLAVAGKGGVGKTTVAAGLIKIM 24 (254)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999877
No 499
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.65 E-value=0.072 Score=46.56 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (219)
Q Consensus 62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~ 95 (219)
.+.-++|.|++|+||||+|..|.+ .|...++-|
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD 178 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDD 178 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCC
Confidence 456799999999999999999864 677776543
No 500
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=92.64 E-value=0.087 Score=44.46 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (219)
Q Consensus 61 ~~~~~Ivl~G~PGSGKST~a~~La~~ 86 (219)
....+|+|+|.+|+||||+..++...
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECCCCCChHHHHHHHHhC
Confidence 35589999999999999999998754
Done!