BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027792
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P70392|RGRF2_MOUSE Ras-specific guanine nucleotide-releasing factor 2 OS=Mus musculus
GN=Rasgrf2 PE=1 SV=2
Length = 1189
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 3 LEFECSNVNKWKEALASYEARVESLNKPNLISLDDYYRKELPSLIHQRNPNPHINTTE-L 61
+E E N+ + L + +E L K +++L+ + P +HQ +P I + +
Sbjct: 154 VETEKIATNQLRHQLEDQDTEIERL-KSEIVALNKTKERMRPYHVHQEEEDPDIKKIKKV 212
Query: 62 SKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVL 114
+R L R KW+ + D++ S S++ ++ F + T+ V +L +L
Sbjct: 213 QSFMRGWLCRRKWKTIVQDYICSPHAESMRKRNQIVFTMVEAETEYVHQLYIL 265
>sp|A2CEA7|RGRF2_DANRE Ras-specific guanine nucleotide-releasing factor 2 OS=Danio rerio
GN=rasgrf2 PE=3 SV=1
Length = 1244
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 11 NKWKEALASYEARVESLNKPNLISLDDYYRKELPSLIHQRNPNPHINTTE-LSKLVRWKL 69
N+ + L + +E L K +I+L+ + P + Q +P I + + +R L
Sbjct: 158 NQLRTQLEDQDTEIERL-KAEIIALNKTKERMRPYHVFQEEEDPDIKKIKKVQSFMRGWL 216
Query: 70 TRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVL 114
R KW+ + D++ S S++ ++ F + T+ V +L++L
Sbjct: 217 CRRKWKIIVQDYICSPHAESMRKRNQIVFNMVEAETEYVHQLSIL 261
>sp|Q99JE4|RGRF2_RAT Ras-specific guanine nucleotide-releasing factor 2 OS=Rattus
norvegicus GN=Rasgrf2 PE=1 SV=1
Length = 1190
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 11 NKWKEALASYEARVESLNKPNLISLDDYYRKELPSLIHQRNPNPHINTTE-LSKLVRWKL 69
N+ + L + +E L K +++L+ + P HQ +P I + + +R L
Sbjct: 162 NQLRHQLEDQDTEIERL-KSEIVALNKTKERMRPYHTHQEEEDPDIKKIKKVQSFMRGWL 220
Query: 70 TRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVL 114
R KW+ + D++ S S++ ++ F + ++ V +L +L
Sbjct: 221 CRRKWKTIVQDYICSPHAESMRKRNQIVFTMVEAESEYVHQLYIL 265
>sp|Q46AW0|SYL_METBF Leucine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro / DSM
804) GN=leuS PE=3 SV=1
Length = 966
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Query: 58 TTELSKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGV 117
+TEL ++ RW L+R + R D S+L + A + +F L + K +G
Sbjct: 703 STELKQIDRWILSRIQNYIR--DTNSALYSIQTREAIQNSFFLLQNDVKWYQR----RG- 755
Query: 118 GPATASAVLAAYAPGVAPFMSD--EAMGAALGHSKDYSLKQYLLFADKLQAKAKELVSEE 175
G VL + +APF E + A+GH SL QY L+ + L EL E
Sbjct: 756 GETLLYYVLDNWVRLMAPFTPHLCEEIWEAMGHKDPVSLAQYPLYNEGLIDDGAELAEEM 815
Query: 176 NCFTPFDVERAL 187
T DVE +
Sbjct: 816 IKGTLEDVEEII 827
>sp|Q7USB0|RUVA_RHOBA Holliday junction ATP-dependent DNA helicase RuvA OS=Rhodopirellula
baltica (strain SH1) GN=ruvA PE=3 SV=1
Length = 207
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 26/113 (23%)
Query: 33 ISLDDYYRKELPSLIHQRNPNPHINTTELSKL--VRWKLTRGKWRPRLL----------- 79
+ + DY R++L + I N L L + G+ PRL+
Sbjct: 28 VYVGDYTRRQLQNQIG--------NEVRLHTLDYIEGNAQGGRLTPRLIGFSTLPERQFF 79
Query: 80 DFVSSLDDSSVKSASEKAFKSLPDLTKAVSE-----LTVLKGVGPATASAVLA 127
D S+D VK A + + +L + E L+ L G+GPAT+ V+A
Sbjct: 80 DLFCSVDGVGVKKALRAMVRPVKELAVLIEEQDAKTLSALPGIGPATSEKVIA 132
>sp|Q64GL0|EVL_XENLA Ena/VASP-like protein OS=Xenopus laevis GN=evl PE=2 SV=1
Length = 692
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 69 LTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAA 128
LT+ +P F SS S S F SLP AVSELT+ K P S+ +
Sbjct: 399 LTQASPQP----FQSSTHPSQQSYQSMSHFVSLPPPYAAVSELTLPKRTTPYMTSSTITQ 454
Query: 129 YAPGVAP-FMSDEAMGAAL 146
++P + P S AM A++
Sbjct: 455 FSPVLPPGHPSSAAMVASV 473
>sp|Q3E954|BOR6_ARATH Probable boron transporter 6 OS=Arabidopsis thaliana GN=BOR6 PE=2
SV=2
Length = 671
Score = 31.6 bits (70), Expect = 4.4, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 92 SASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPGV---APFMSDEAMGAALGH 148
S + F LP ++ TV+K +G +LAA+ PGV + D ++ + +
Sbjct: 263 SVPRRLFCPLPWEPASLYHWTVVKDMGKVPIMYILAAFIPGVMIAGLYFFDHSVASQMAQ 322
Query: 149 SKDYSLK 155
K+++LK
Sbjct: 323 QKEFNLK 329
>sp|Q8TQD3|SYL_METAC Leucine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=leuS PE=3 SV=1
Length = 961
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 9/132 (6%)
Query: 58 TTELSKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGV 117
+TEL + RW L+R + +++ +LD + A + +F L + + +G
Sbjct: 703 STELKLIDRWMLSR--MQKYIMETNIALDSIQTREAIQNSFFLLINDVRWYQR----RG- 755
Query: 118 GPATASAVLAAYAPGVAPFMSD--EAMGAALGHSKDYSLKQYLLFADKLQAKAKELVSEE 175
G A VL + +APF E + A+GH SL QY L + L + EL E
Sbjct: 756 GEALLYYVLDNWVRLMAPFTPHLCEEIWEAMGHEDPISLAQYPLDNEDLIDEGAELAEEA 815
Query: 176 NCFTPFDVERAL 187
T D+E +
Sbjct: 816 VKSTLNDIEEIV 827
>sp|B0CEV0|Y4368_ACAM1 UPF0758 protein AM1_4368 OS=Acaryochloris marina (strain MBIC
11017) GN=AM1_4368 PE=3 SV=1
Length = 243
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 109 SELTVLKGVGPATASAVLAAYAPG 132
SELT ++G+GPA A+ +LAA G
Sbjct: 77 SELTTIQGIGPAKATTILAAIELG 100
>sp|Q8Q054|SYL_METMA Leucine--tRNA ligase OS=Methanosarcina mazei (strain ATCC BAA-159 /
DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=leuS PE=3
SV=2
Length = 966
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 9/132 (6%)
Query: 58 TTELSKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGV 117
+ EL ++ RW L+R + + + ++LD + A + +F L + + +G
Sbjct: 703 SAELKQIDRWMLSR--MQNYIKETNAALDSIQTREAIQNSFFLLINDVRWYQR----RG- 755
Query: 118 GPATASAVLAAYAPGVAPFMSD--EAMGAALGHSKDYSLKQYLLFADKLQAKAKELVSEE 175
G A VL + +APF E + A+GH SL QY L+ + L EL E
Sbjct: 756 GEALLYYVLDNWVRLMAPFTPHLCEEVWEAMGHEDPVSLAQYPLYNEDLIDNGAELSEEA 815
Query: 176 NCFTPFDVERAL 187
T D+E +
Sbjct: 816 VKSTLNDIEEII 827
>sp|A9WT69|UVRC_RENSM UvrABC system protein C OS=Renibacterium salmoninarum (strain ATCC
33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235)
GN=uvrC PE=3 SV=1
Length = 655
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 78 LLDFVSSLDDSSVKSASEKAFKSLPDLTKA-VSELTVLKGVGPATASAVLAA 128
LLD V L +S K A K F S+ L A VS+++ +KG+GP A AV +A
Sbjct: 585 LLDGVPGLGESKQK-ALLKHFGSVKKLQSADVSQISEVKGIGPVLAEAVRSA 635
>sp|O14827|RGRF2_HUMAN Ras-specific guanine nucleotide-releasing factor 2 OS=Homo sapiens
GN=RASGRF2 PE=1 SV=2
Length = 1237
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 11 NKWKEALASYEARVESLNKPNLISLDDYYRKELPSLIHQRNPNPHINTTE-LSKLVRWKL 69
N+ + L + +E L K +I+L+ + P +Q + +P I + + +R L
Sbjct: 162 NQLRHQLEDQDTEIERL-KSEIIALNKTKERMRPYQSNQEDEDPDIKKIKKVQSFMRGWL 220
Query: 70 TRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVL 114
R KW+ + D++ S S++ ++ F + ++ V +L +L
Sbjct: 221 CRRKWKTIVQDYICSPHAESMRKRNQIVFTMVEAESEYVHQLYIL 265
>sp|B0JTF4|Y4435_MICAN UPF0758 protein MAE_44350 OS=Microcystis aeruginosa (strain
NIES-843) GN=MAE_44350 PE=3 SV=1
Length = 243
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 110 ELTVLKGVGPATASAVLAAYAPGVAPFM----------SDEAMGAALGHSKDY 152
ELT + G+GPA A+ +LAA G F S + A LGH Y
Sbjct: 78 ELTAIHGIGPAKATTILAAIELGKRAFQRRPTEKMVIDSPDTAAAILGHELMY 130
>sp|Q7MW36|RUVA_PORGI Holliday junction ATP-dependent DNA helicase RuvA OS=Porphyromonas
gingivalis (strain ATCC BAA-308 / W83) GN=ruvA PE=3 SV=1
Length = 202
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 109 SELTVLKGVGPATASAVLAAYAP 131
+LT + GVGP TA +L++YAP
Sbjct: 72 GQLTSVSGVGPTTAQLILSSYAP 94
>sp|P07252|CBP1_YEAST Cytochrome B pre-mRNA-processing protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CBP1 PE=1
SV=1
Length = 654
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 120 ATASAVLAAYAPGVAPFMSDEAMGAALGHSKDYSLKQYLLFADKLQAKAKELVSEENCFT 179
A A +L PG A A G+ + D+ L + F D L A +L+++ + F
Sbjct: 442 AKAVKLLDTIPPGQAML----AYGSIINEVVDWKLASKVKFTDNLMALVNDLLTKAHDFD 497
Query: 180 PFDVERALWSSAIGLKLKASKSNQDSEIKTTKNSKR 215
P D +LW+ L +K + + K N+K+
Sbjct: 498 P-DHRNSLWNVVSALYIKKLCHYKKRDGKFVANAKK 532
>sp|Q9XI23|BOR4_ARATH Boron transporter 4 OS=Arabidopsis thaliana GN=BOR4 PE=2 SV=1
Length = 683
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 96 KAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPGV---APFMSDEAMGAALGHSKDY 152
+ F LP + ++S TV+K +G + + AA+ P + + D ++ + L K++
Sbjct: 270 RLFSPLPWDSPSLSHWTVIKDMGKVSPGYIFAAFIPALMIAGLYFFDHSVASQLAQQKEF 329
Query: 153 SLKQ 156
+LK+
Sbjct: 330 NLKK 333
>sp|B2RJ07|RUVA_PORG3 Holliday junction ATP-dependent DNA helicase RuvA OS=Porphyromonas
gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
GN=ruvA PE=3 SV=1
Length = 202
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 109 SELTVLKGVGPATASAVLAAYAP 131
+LT + GVGP TA +L++YAP
Sbjct: 72 GQLTSVSGVGPTTARLILSSYAP 94
>sp|A8LW31|UVRC_SALAI UvrABC system protein C OS=Salinispora arenicola (strain CNS-205)
GN=uvrC PE=3 SV=1
Length = 660
Score = 30.4 bits (67), Expect = 9.9, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 79 LDFVSSLDDSSVKSASEKAFKSLPDLTKA-VSELTVLKGVGPATASAVLAAYA 130
LD VS L + K A + F SL L A V E+T + G+G TA A+LAA A
Sbjct: 599 LDRVSGLGEVRRK-ALLRHFGSLKRLAAASVEEITEVPGIGKRTAEAILAALA 650
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,677,089
Number of Sequences: 539616
Number of extensions: 2777540
Number of successful extensions: 7946
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 7938
Number of HSP's gapped (non-prelim): 31
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)