Query 027792
Match_columns 219
No_of_seqs 113 out of 150
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 02:11:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fhg_A Mjogg, N-glycosylase/DN 98.0 7E-05 2.4E-09 63.2 11.6 85 103-193 111-203 (207)
2 3fhf_A Mjogg, N-glycosylase/DN 97.9 0.00018 6E-09 61.6 12.9 89 98-193 113-210 (214)
3 3n0u_A Probable N-glycosylase/ 97.7 0.00028 9.7E-09 60.4 10.7 84 103-192 123-214 (219)
4 2xhi_A N-glycosylase/DNA lyase 96.3 0.037 1.2E-06 50.4 11.9 61 103-164 247-318 (360)
5 3s6i_A DNA-3-methyladenine gly 96.2 0.0088 3E-07 51.1 6.4 54 104-158 134-193 (228)
6 4e9f_A Methyl-CPG-binding doma 95.9 0.0041 1.4E-07 50.9 2.9 72 57-131 44-126 (161)
7 3i0w_A 8-oxoguanine-DNA-glycos 95.7 0.0065 2.2E-07 53.6 3.8 39 103-143 205-245 (290)
8 2h56_A DNA-3-methyladenine gly 95.7 0.018 6.2E-07 49.2 6.3 38 105-143 134-173 (233)
9 4b21_A Probable DNA-3-methylad 95.5 0.028 9.6E-07 48.2 6.9 33 104-136 145-179 (232)
10 2yg9_A DNA-3-methyladenine gly 95.0 0.019 6.4E-07 48.9 4.2 33 103-135 140-174 (225)
11 1mpg_A ALKA, 3-methyladenine D 94.7 0.024 8.1E-07 49.5 4.1 44 103-147 201-246 (282)
12 3n5n_X A/G-specific adenine DN 94.7 0.082 2.8E-06 46.9 7.5 35 107-142 126-161 (287)
13 1pu6_A 3-methyladenine DNA gly 94.3 0.031 1.1E-06 47.2 3.9 27 104-130 116-142 (218)
14 2abk_A Endonuclease III; DNA-r 94.1 0.11 3.8E-06 43.3 6.8 36 106-143 106-143 (211)
15 1kea_A Possible G-T mismatches 94.1 0.054 1.8E-06 45.7 4.8 25 106-130 112-136 (221)
16 2jhn_A ALKA, 3-methyladenine D 93.8 0.043 1.5E-06 48.3 3.9 37 105-142 206-243 (295)
17 1orn_A Endonuclease III; DNA r 93.2 0.081 2.8E-06 44.9 4.5 36 106-143 110-147 (226)
18 1kg2_A A/G-specific adenine gl 93.2 0.084 2.9E-06 44.6 4.5 36 106-142 106-141 (225)
19 3fsp_A A/G-specific adenine gl 92.5 0.11 3.6E-06 46.8 4.4 38 106-143 115-152 (369)
20 3arc_U Photosystem II 12 kDa e 91.1 0.062 2.1E-06 40.6 1.1 38 105-147 22-59 (97)
21 1s5l_U Photosystem II 12 kDa e 91.0 0.058 2E-06 43.2 0.8 39 105-148 59-97 (134)
22 2duy_A Competence protein come 89.1 0.21 7.3E-06 34.9 2.4 36 107-147 25-60 (75)
23 2i5h_A Hypothetical protein AF 87.6 0.13 4.4E-06 43.9 0.5 63 78-147 106-169 (205)
24 2a1j_B DNA excision repair pro 87.2 1.1 3.7E-05 32.4 5.3 42 83-129 11-52 (91)
25 1x2i_A HEF helicase/nuclease; 86.4 0.49 1.7E-05 32.2 2.9 24 107-130 44-67 (75)
26 2ztd_A Holliday junction ATP-d 83.7 0.6 2E-05 39.7 2.8 29 104-132 83-111 (212)
27 2edu_A Kinesin-like protein KI 83.7 0.33 1.1E-05 35.7 1.1 40 107-147 38-77 (98)
28 1ixr_A Holliday junction DNA h 81.6 0.82 2.8E-05 38.1 2.8 27 105-131 68-94 (191)
29 3u5c_S 40S ribosomal protein S 80.1 1.3 4.5E-05 35.7 3.4 49 106-154 27-81 (146)
30 2a1j_A DNA repair endonuclease 78.7 0.73 2.5E-05 31.6 1.3 21 108-128 3-23 (63)
31 1cuk_A RUVA protein; DNA repai 78.1 1.1 3.9E-05 37.5 2.6 27 105-131 69-95 (203)
32 1x2i_A HEF helicase/nuclease; 77.9 2 6.8E-05 29.1 3.4 24 106-129 11-34 (75)
33 1z00_A DNA excision repair pro 77.8 1.8 6.1E-05 30.9 3.2 24 106-129 16-39 (89)
34 1kft_A UVRC, excinuclease ABC 77.6 1.6 5.5E-05 30.5 2.9 23 107-129 54-76 (78)
35 1z00_A DNA excision repair pro 76.4 1.8 6.1E-05 30.9 2.9 24 107-130 49-72 (89)
36 3r8n_M 30S ribosomal protein S 76.4 3.1 0.00011 32.2 4.4 39 106-144 13-54 (114)
37 2a1j_B DNA excision repair pro 75.4 1.8 6.2E-05 31.1 2.7 23 108-130 63-85 (91)
38 1kft_A UVRC, excinuclease ABC 73.4 1.5 5.1E-05 30.6 1.8 21 109-129 24-44 (78)
39 1z00_B DNA repair endonuclease 69.4 3.3 0.00011 30.1 2.9 23 106-128 15-37 (84)
40 3j20_O 30S ribosomal protein S 69.1 4.7 0.00016 32.5 4.1 39 105-143 19-60 (148)
41 2xzm_M RPS18E; ribosome, trans 68.7 5.3 0.00018 32.4 4.3 41 105-145 26-69 (155)
42 3vdp_A Recombination protein R 68.6 2.6 9E-05 36.0 2.5 22 104-125 21-42 (212)
43 2bcq_A DNA polymerase lambda; 66.4 2 7E-05 38.4 1.5 24 107-130 55-78 (335)
44 3iz6_M 40S ribosomal protein S 66.1 6.2 0.00021 31.9 4.2 51 104-154 23-79 (152)
45 2fmp_A DNA polymerase beta; nu 66.0 5.9 0.0002 35.3 4.5 24 105-128 94-117 (335)
46 2fmp_A DNA polymerase beta; nu 65.2 2.3 7.8E-05 38.0 1.6 33 98-130 46-78 (335)
47 2vqe_M 30S ribosomal protein S 64.3 4.9 0.00017 31.6 3.2 40 106-145 14-56 (126)
48 2w9m_A Polymerase X; SAXS, DNA 61.3 4.6 0.00016 38.4 3.0 24 105-128 93-116 (578)
49 1vdd_A Recombination protein R 60.5 4.6 0.00016 34.8 2.5 22 104-125 7-28 (228)
50 2ihm_A POL MU, DNA polymerase 59.9 5.4 0.00018 36.0 3.0 25 104-128 97-121 (360)
51 1vq8_Y 50S ribosomal protein L 58.3 2.1 7.1E-05 36.9 0.0 23 106-128 12-34 (241)
52 3b0x_A DNA polymerase beta fam 57.6 5.8 0.0002 37.6 3.0 24 105-128 89-112 (575)
53 3ory_A Flap endonuclease 1; hy 56.5 15 0.00052 33.1 5.4 71 113-191 255-341 (363)
54 1jms_A Terminal deoxynucleotid 55.6 7 0.00024 35.6 3.0 25 104-128 116-140 (381)
55 2bcq_A DNA polymerase lambda; 53.8 6.6 0.00023 35.1 2.5 22 107-128 94-115 (335)
56 2ztd_A Holliday junction ATP-d 53.0 26 0.00089 29.5 6.0 25 108-132 122-146 (212)
57 2ihm_A POL MU, DNA polymerase 52.5 3.4 0.00012 37.3 0.4 32 99-130 51-82 (360)
58 3mab_A Uncharacterized protein 51.6 3.8 0.00013 30.4 0.5 23 107-129 2-24 (93)
59 1wcn_A Transcription elongatio 50.5 1.4 4.9E-05 30.9 -1.9 51 88-140 18-69 (70)
60 1ci4_A Protein (barrier-TO-aut 49.3 6.5 0.00022 29.3 1.4 20 110-129 19-38 (89)
61 2bgw_A XPF endonuclease; hydro 48.2 11 0.00037 31.0 2.8 22 108-129 161-182 (219)
62 2kp7_A Crossover junction endo 44.7 6.9 0.00023 28.6 0.9 29 98-126 47-75 (87)
63 1jms_A Terminal deoxynucleotid 44.6 5.4 0.00018 36.3 0.4 34 98-131 69-102 (381)
64 2nrt_A Uvrabc system protein C 44.1 12 0.00041 31.9 2.5 21 109-129 168-188 (220)
65 4gfj_A Topoisomerase V; helix- 40.9 14 0.00047 35.4 2.5 21 108-128 467-487 (685)
66 3psf_A Transcription elongatio 40.4 23 0.00079 36.5 4.3 35 108-142 716-750 (1030)
67 3bqs_A Uncharacterized protein 40.0 16 0.00054 27.0 2.3 22 108-129 3-24 (93)
68 3oao_A Uncharacterized protein 39.9 23 0.00079 28.2 3.4 62 54-120 78-143 (147)
69 1ixr_A Holliday junction DNA h 38.9 17 0.00057 30.1 2.5 24 107-130 105-128 (191)
70 1cuk_A RUVA protein; DNA repai 37.0 18 0.00062 30.0 2.5 42 79-129 87-128 (203)
71 3psi_A Transcription elongatio 34.8 26 0.00087 36.8 3.7 36 108-143 713-748 (1219)
72 3c65_A Uvrabc system protein C 32.6 9.3 0.00032 32.6 0.0 22 108-129 172-193 (226)
73 1b22_A DNA repair protein RAD5 32.3 24 0.00082 26.9 2.3 43 87-129 35-78 (114)
74 3bbn_M Ribosomal protein S13; 30.0 7.5 0.00026 31.3 -1.0 27 103-129 56-82 (145)
75 2bgw_A XPF endonuclease; hydro 29.7 29 0.00099 28.3 2.6 23 107-129 192-214 (219)
76 2w9m_A Polymerase X; SAXS, DNA 27.7 24 0.00082 33.5 1.9 41 88-128 108-150 (578)
77 1vq8_Y 50S ribosomal protein L 27.4 13 0.00044 31.9 0.0 33 97-129 35-68 (241)
78 1exn_A 5'-exonuclease, 5'-nucl 26.9 26 0.0009 30.7 1.9 24 106-129 192-223 (290)
79 2ziu_A MUS81 protein; helix-ha 23.4 44 0.0015 28.7 2.7 24 107-131 235-258 (311)
80 2fsu_A Protein PHNH; C-P lyase 22.8 65 0.0022 27.2 3.5 22 115-137 58-79 (210)
81 4glx_A DNA ligase; inhibitor, 21.9 61 0.0021 31.3 3.5 22 107-128 542-563 (586)
82 3c1y_A DNA integrity scanning 21.6 47 0.0016 30.4 2.6 71 56-127 285-365 (377)
83 3bzc_A TEX; helix-turn-helix, 20.8 30 0.001 34.6 1.1 34 106-140 505-538 (785)
84 1ul1_X Flap endonuclease-1; pr 20.6 92 0.0032 27.8 4.3 26 103-128 220-251 (379)
85 3ph0_A ASCE; type III secretio 20.1 1.1E+02 0.0038 21.5 3.6 26 78-103 5-30 (67)
No 1
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=97.97 E-value=7e-05 Score=63.16 Aligned_cols=85 Identities=21% Similarity=0.259 Sum_probs=64.9
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHh-hcCCCCCcccHHHHHHh--cC---C--CCCCCHHHHHHHHHHHHHHHHHhhcc
Q 027792 103 DLTKAVSELTVLKGVGPATASAVLAA-YAPGVAPFMSDEAMGAA--LG---H--SKDYSLKQYLLFADKLQAKAKELVSE 174 (219)
Q Consensus 103 dv~~al~~L~~LkGVGPATASaILa~-~~P~~~pFfsDEa~~~~--~g---~--~~kYt~keY~~~~~~l~~~~~~L~~~ 174 (219)
+...+++.|++||||||-||++||.. ..++ ++..++-+...+ .| . +..-+.++|.++-..++..++.+
T Consensus 111 ~~~~~~~~L~~lpGIG~kTA~~il~~~~~~~-~~~vD~~v~Ri~~rlg~~~~~~~k~~~~k~y~~~~~~l~~~~~~~--- 186 (207)
T 3fhg_A 111 DQQLARERLLNIKGIGMQEASHFLRNVGYFD-LAIIDRHIIDFMRRIGAIGETNVKQLSKSLYISFENILKSIASNL--- 186 (207)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHTTCCS-SCCCCHHHHHHHHHTTSSCCCCCSCCCHHHHHHHHHHHHHHHHHT---
T ss_pred CHHHHHHHHHcCCCcCHHHHHHHHHHhCCCC-cceecHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHHHHHh---
Confidence 45578999999999999999999995 5543 233455455432 23 1 34678999999999999988887
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q 027792 175 ENCFTPFDVERALWSSAIG 193 (219)
Q Consensus 175 ~~~~t~~~VEkalws~~v~ 193 (219)
.+++..++.++|...-+
T Consensus 187 --~~~~~~lDl~lw~~~~g 203 (207)
T 3fhg_A 187 --NMSVGILDLFIWYKETN 203 (207)
T ss_dssp --TSCHHHHHHHHHHHHHS
T ss_pred --CCCHHHHHHHHHHHHhC
Confidence 48899999999987543
No 2
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=97.90 E-value=0.00018 Score=61.58 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=66.1
Q ss_pred HhhCccHHHHHHHhh-ccCCCChHHHHHHHHhhcCCCCCcc-cHHHHHHh---cC----CCCCCCHHHHHHHHHHHHHHH
Q 027792 98 FKSLPDLTKAVSELT-VLKGVGPATASAVLAAYAPGVAPFM-SDEAMGAA---LG----HSKDYSLKQYLLFADKLQAKA 168 (219)
Q Consensus 98 f~~l~dv~~al~~L~-~LkGVGPATASaILa~~~P~~~pFf-sDEa~~~~---~g----~~~kYt~keY~~~~~~l~~~~ 168 (219)
|..+.++..+++.|. +||||||-||++||....- .+|+ -|--..-+ +| .+...|.+.|.++-..++..+
T Consensus 113 ~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g~--~~~~vVDthv~Ri~~RlG~~~~~~k~lt~~~y~e~~~~l~~~g 190 (214)
T 3fhf_A 113 VESFENEKVAREFLVRNIKGIGYKEASHFLRNVGY--DDVAIIDRHILRELYENNYIDEIPKTLSRRKYLEIENILRDIG 190 (214)
T ss_dssp HHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTTC--CSCCCCCHHHHHHHHHTTSSSSCCSSCCHHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCC--CCcccCcHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 333346788999999 9999999999999986422 2444 45433322 34 235678899999999999999
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHh
Q 027792 169 KELVSEENCFTPFDVERALWSSAIG 193 (219)
Q Consensus 169 ~~L~~~~~~~t~~~VEkalws~~v~ 193 (219)
+.+ .+++..+...+|...-+
T Consensus 191 ~~~-----g~~~g~lDl~lW~~~tg 210 (214)
T 3fhf_A 191 EEV-----NLKLSELDLYIWYLRTG 210 (214)
T ss_dssp HHT-----TCCHHHHHHHHHHHHHS
T ss_pred HHH-----CCCHHHHHHHHHHHHhC
Confidence 888 48899999999987543
No 3
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=97.68 E-value=0.00028 Score=60.44 Aligned_cols=84 Identities=24% Similarity=0.263 Sum_probs=64.6
Q ss_pred cHHHHHHHhh-ccCCCChHHHHHHHHh-hcCCCCCcccHHHHHHh--cC----CCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 027792 103 DLTKAVSELT-VLKGVGPATASAVLAA-YAPGVAPFMSDEAMGAA--LG----HSKDYSLKQYLLFADKLQAKAKELVSE 174 (219)
Q Consensus 103 dv~~al~~L~-~LkGVGPATASaILa~-~~P~~~pFfsDEa~~~~--~g----~~~kYt~keY~~~~~~l~~~~~~L~~~ 174 (219)
++..+++.|+ +||||||-||++||.. ..++.+| .++-+...+ .| .+..-|-+.|.++-+.+++.+.++
T Consensus 123 ~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~~~~~~-VDthv~Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~~~a~~~--- 198 (219)
T 3n0u_A 123 DPFQSREFLVRNAKGIGWKEASHFLRNTGVEDLAI-LDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRKVAEAF--- 198 (219)
T ss_dssp CHHHHHHHHHHHSTTCCHHHHHHHHHTTTCCSCCC-CCHHHHHHHHHTTSCSSCCSSCCHHHHHHHHHHHHHHHHHH---
T ss_pred CcHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCeee-ecHHHHHHHHHcCCCCcCcCcCCHHHHHHHHHHHHHHHHHH---
Confidence 5678999999 9999999999999975 4433433 455555432 23 244678899999988999999888
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 027792 175 ENCFTPFDVERALWSSAI 192 (219)
Q Consensus 175 ~~~~t~~~VEkalws~~v 192 (219)
++++..+...+|...-
T Consensus 199 --g~~~~~ldl~lW~~~~ 214 (219)
T 3n0u_A 199 --GESPGKFDLYLWYLVK 214 (219)
T ss_dssp --TCCHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHh
Confidence 4889999999998743
No 4
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=96.34 E-value=0.037 Score=50.42 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=41.1
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHh--hcCCCCCcccHHHHH---HhcCCC------CCCCHHHHHHHHHHH
Q 027792 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPGVAPFMSDEAMG---AALGHS------KDYSLKQYLLFADKL 164 (219)
Q Consensus 103 dv~~al~~L~~LkGVGPATASaILa~--~~P~~~pFfsDEa~~---~~~g~~------~kYt~keY~~~~~~l 164 (219)
+...+++.|++||||||-||.+||.. ..|+.+|+ +.-+.. ...|.. ...+.+.|.++.+.+
T Consensus 247 ~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpv-DthV~Ri~~r~~gl~~~~~~~k~~~~~~~~~l~~~~ 318 (360)
T 2xhi_A 247 SYEEAHKALCILPGVGTCVADKICLMALDKPQAVPV-NVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFF 318 (360)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCC-SHHHHHHHHHHHCCCCSSCSCSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEe-cHHHHHHHHHHhCcccccccccCCChHHHHHHHHHH
Confidence 34589999999999999999999986 47777775 333332 223421 123467787765555
No 5
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=96.17 E-value=0.0088 Score=51.10 Aligned_cols=54 Identities=22% Similarity=0.174 Sum_probs=35.9
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHh--hcCCCCCcccHHHH----HHhcCCCCCCCHHHHH
Q 027792 104 LTKAVSELTVLKGVGPATASAVLAA--YAPGVAPFMSDEAM----GAALGHSKDYSLKQYL 158 (219)
Q Consensus 104 v~~al~~L~~LkGVGPATASaILa~--~~P~~~pFfsDEa~----~~~~g~~~kYt~keY~ 158 (219)
...+++.|+.|+||||-||.+||.. ..|+.+| .+|=.+ ..+.|.+..-+.++..
T Consensus 134 ~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fp-vdD~~v~r~~~~~~~~~~~~~~~~~~ 193 (228)
T 3s6i_A 134 NEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMP-ADDLSIRNGYRYLHRLPKIPTKMYVL 193 (228)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCC-TTCHHHHHHHHHHTTCSSCCCHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEe-cccHHHHHHHHHHhCCCCCCCHHHHH
Confidence 4568999999999999999999976 4676666 334333 3344533333444443
No 6
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=95.89 E-value=0.0041 Score=50.87 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHhhcCCCCcchHHHhhhCCHHHHHHHHHH-HH------hhCc----cHHHHHHHhhccCCCChHHHHHH
Q 027792 57 NTTELSKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEK-AF------KSLP----DLTKAVSELTVLKGVGPATASAV 125 (219)
Q Consensus 57 tkdEL~~Lv~WKL~rGkfRP~L~~lV~sN~~~~V~~~t~~-Af------~~l~----dv~~al~~L~~LkGVGPATASaI 125 (219)
|.++-+.-+-.+|.. + -|+...+.+.+ ++.|.++.+- +| .+.. .+....+.|.+|+||||-||.+|
T Consensus 44 T~~~~v~~~~~~l~~-~-~pt~~~la~a~-~~el~~~i~~lG~y~~KAk~i~~~a~~~vp~~~~~L~~LpGVG~yTAdav 120 (161)
T 4e9f_A 44 TSGKMAIPVLWKFLE-K-YPSAEVARTAD-WRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSY 120 (161)
T ss_dssp SCHHHHHHHHHHHHH-H-SCSHHHHTTSC-HHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCCSSGGGSTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-H-CCCHHHHhccC-hHhHHhHhhhcCCHHHHHHHHHHHhCCcCCCChhhhhcCCCchHHHHHHH
Confidence 567777766666653 2 37777776555 4445544321 11 1100 13334677899999999999999
Q ss_pred HHhhcC
Q 027792 126 LAAYAP 131 (219)
Q Consensus 126 La~~~P 131 (219)
+++..-
T Consensus 121 ~~F~~~ 126 (161)
T 4e9f_A 121 RIFCVN 126 (161)
T ss_dssp HHHTSS
T ss_pred HHHHCC
Confidence 998644
No 7
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=95.74 E-value=0.0065 Score=53.62 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=32.0
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHh--hcCCCCCcccHHHHH
Q 027792 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPGVAPFMSDEAMG 143 (219)
Q Consensus 103 dv~~al~~L~~LkGVGPATASaILa~--~~P~~~pFfsDEa~~ 143 (219)
+...+++.|++||||||-||..||.. ..|+.+|. |-.+.
T Consensus 205 ~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpv--D~~v~ 245 (290)
T 3i0w_A 205 NDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPV--DTWVK 245 (290)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCC--CHHHH
T ss_pred CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCccee--cHHHH
Confidence 46789999999999999999999965 57888886 54443
No 8
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=95.70 E-value=0.018 Score=49.17 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=29.6
Q ss_pred HHHHHHhhccCCCChHHHHHHHHh--hcCCCCCcccHHHHH
Q 027792 105 TKAVSELTVLKGVGPATASAVLAA--YAPGVAPFMSDEAMG 143 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaILa~--~~P~~~pFfsDEa~~ 143 (219)
..+++.|++||||||-||.+||.. ..|+.+| .+|=.+.
T Consensus 134 ~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~p-vdd~~~r 173 (233)
T 2h56_A 134 TTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLS-VGDVGLQ 173 (233)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCC-TTCHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeee-CchHHHH
Confidence 478999999999999999999986 4676655 4454443
No 9
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=95.53 E-value=0.028 Score=48.16 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=27.4
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHhh--cCCCCCc
Q 027792 104 LTKAVSELTVLKGVGPATASAVLAAY--APGVAPF 136 (219)
Q Consensus 104 v~~al~~L~~LkGVGPATASaILa~~--~P~~~pF 136 (219)
...+++.|++||||||-||.+||... .|+.+|.
T Consensus 145 ~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv 179 (232)
T 4b21_A 145 EEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPA 179 (232)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCT
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeC
Confidence 34789999999999999999999874 5766663
No 10
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=95.02 E-value=0.019 Score=48.90 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=27.6
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHhh--cCCCCC
Q 027792 103 DLTKAVSELTVLKGVGPATASAVLAAY--APGVAP 135 (219)
Q Consensus 103 dv~~al~~L~~LkGVGPATASaILa~~--~P~~~p 135 (219)
+...+++.|++||||||=||.+||... .|+.+|
T Consensus 140 ~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fp 174 (225)
T 2yg9_A 140 PDELVIAELVQLPGIGRWTAEMFLLFALARPDVFS 174 (225)
T ss_dssp CHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCC
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeee
Confidence 456789999999999999999999873 576656
No 11
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=94.72 E-value=0.024 Score=49.50 Aligned_cols=44 Identities=23% Similarity=0.202 Sum_probs=33.7
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHhh--cCCCCCcccHHHHHHhcC
Q 027792 103 DLTKAVSELTVLKGVGPATASAVLAAY--APGVAPFMSDEAMGAALG 147 (219)
Q Consensus 103 dv~~al~~L~~LkGVGPATASaILa~~--~P~~~pFfsDEa~~~~~g 147 (219)
+...+++.|++||||||-||.+||... .|+.+| .+|-.+.-.++
T Consensus 201 ~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~p-vdd~~~r~~l~ 246 (282)
T 1mpg_A 201 DVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFL-PDDYLIKQRFP 246 (282)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCC-TTCHHHHHHST
T ss_pred CHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCc-cccHHHHHHhc
Confidence 567899999999999999999999864 566544 45666554443
No 12
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=94.67 E-value=0.082 Score=46.92 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=25.5
Q ss_pred HHHHhhc-cCCCChHHHHHHHHhhcCCCCCcccHHHH
Q 027792 107 AVSELTV-LKGVGPATASAVLAAYAPGVAPFMSDEAM 142 (219)
Q Consensus 107 al~~L~~-LkGVGPATASaILa~~~P~~~pFfsDEa~ 142 (219)
.++.|.+ |+||||-||.+||....-.. .|..|--+
T Consensus 126 ~~~~Ll~~LpGIG~kTA~~iL~~a~g~p-~~~VDt~V 161 (287)
T 3n5n_X 126 TAETLQQLLPGVGRYTAGAIASIAFGQA-TGVVDGNV 161 (287)
T ss_dssp SHHHHHHHSTTCCHHHHHHHHHHHSCCC-CCCCCHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhcCCC-CccccHHH
Confidence 5788887 99999999999999854332 23445433
No 13
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=94.32 E-value=0.031 Score=47.20 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=23.2
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHhhc
Q 027792 104 LTKAVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 104 v~~al~~L~~LkGVGPATASaILa~~~ 130 (219)
...+++.|++||||||-||++||....
T Consensus 116 ~~~~~~~L~~lpGIG~kTA~~il~~a~ 142 (218)
T 1pu6_A 116 QEVTREWLLDQKGIGKESADAILCYAC 142 (218)
T ss_dssp HHCCHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred chHHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 455788899999999999999999743
No 14
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=94.11 E-value=0.11 Score=43.33 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=26.5
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh--cCCCCCcccHHHHH
Q 027792 106 KAVSELTVLKGVGPATASAVLAAY--APGVAPFMSDEAMG 143 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaILa~~--~P~~~pFfsDEa~~ 143 (219)
.+++.|++||||||-||.+||... .| .+| .++-+..
T Consensus 106 ~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~-vD~~v~R 143 (211)
T 2abk_A 106 EDRAALEALPGVGRKTANVVLNTAFGWP-TIA-VDTHIFR 143 (211)
T ss_dssp SCHHHHHHSTTCCHHHHHHHHHHHHCCC-CCC-CCHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHCCCC-cCC-cCHHHHH
Confidence 467889999999999999999974 44 333 3444443
No 15
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=94.08 E-value=0.054 Score=45.73 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.9
Q ss_pred HHHHHhhccCCCChHHHHHHHHhhc
Q 027792 106 KAVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaILa~~~ 130 (219)
.+++.|++||||||-||.+||....
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~~~ 136 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCLAF 136 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHhc
Confidence 4578899999999999999999753
No 16
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=93.85 E-value=0.043 Score=48.29 Aligned_cols=37 Identities=35% Similarity=0.423 Sum_probs=28.7
Q ss_pred HHHHHHhhccCCCChHHHHHHHHh-hcCCCCCcccHHHH
Q 027792 105 TKAVSELTVLKGVGPATASAVLAA-YAPGVAPFMSDEAM 142 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaILa~-~~P~~~pFfsDEa~ 142 (219)
.++++.|++||||||=||.+||.. +.|+.+| .+|=.+
T Consensus 206 ~e~~~~L~~lpGIG~~TA~~ill~~lg~d~fp-vdD~~~ 243 (295)
T 2jhn_A 206 EEAYEYLTSFKGIGRWTAELVLSIALGKNVFP-ADDLGV 243 (295)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHTTCCCCCC-TTCHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHHccCCCccc-chHHHH
Confidence 678999999999999999999985 2376656 344443
No 17
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=93.21 E-value=0.081 Score=44.87 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=27.1
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh--cCCCCCcccHHHHH
Q 027792 106 KAVSELTVLKGVGPATASAVLAAY--APGVAPFMSDEAMG 143 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaILa~~--~P~~~pFfsDEa~~ 143 (219)
.+++.|++|+||||-||.+||... .| .+| .++-+..
T Consensus 110 ~~~~~L~~lpGIG~~TA~~il~~a~g~~-~~~-vD~~v~R 147 (226)
T 1orn_A 110 RDRDELMKLPGVGRKTANVVVSVAFGVP-AIA-VDTHVER 147 (226)
T ss_dssp SCHHHHTTSTTCCHHHHHHHHHHHHCCC-CCC-CCHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHHHHHHCCCc-eee-eCHHHHH
Confidence 468899999999999999999874 44 333 4555544
No 18
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=93.16 E-value=0.084 Score=44.56 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=26.1
Q ss_pred HHHHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHH
Q 027792 106 KAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAM 142 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaILa~~~P~~~pFfsDEa~ 142 (219)
.+++.|++|+||||-||.+||....-.. .|..|--.
T Consensus 106 ~~~~~L~~lpGIG~~TA~~il~~a~~~~-~~~vD~~v 141 (225)
T 1kg2_A 106 ETFEEVAALPGVGRSTAGAILSLSLGKH-FPILDGNV 141 (225)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCS-CCCCCHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCC-cceeCHHH
Confidence 3678999999999999999998743222 23455443
No 19
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=92.51 E-value=0.11 Score=46.82 Aligned_cols=38 Identities=34% Similarity=0.410 Sum_probs=27.5
Q ss_pred HHHHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHHH
Q 027792 106 KAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMG 143 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaILa~~~P~~~pFfsDEa~~ 143 (219)
.+++.|++|+||||-||.+||+...-..++..+.-+..
T Consensus 115 ~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~R 152 (369)
T 3fsp_A 115 DDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMR 152 (369)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_pred hHHHHHhcCCCcCHHHHHHHHHHHCCCCcccccHHHHH
Confidence 46888999999999999999998643333434444443
No 20
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=91.14 E-value=0.062 Score=40.60 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=30.7
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHHHHhcC
Q 027792 105 TKAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALG 147 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaILa~~~P~~~pFfsDEa~~~~~g 147 (219)
.+....|+.|+||||++|..|+. .-||-|-|-+.-+.|
T Consensus 22 tAs~~eL~~lpGIG~~~A~~IV~-----~GpF~s~edL~~V~G 59 (97)
T 3arc_U 22 NTNIAAFIQYRGLYPTLAKLIVK-----NAPYESVEDVLNIPG 59 (97)
T ss_dssp TSCGGGGGGSTTCTTHHHHHHHH-----HCCCSSGGGGGGCTT
T ss_pred cCCHHHHhHCCCCCHHHHHHHHH-----cCCCCCHHHHHhccC
Confidence 34567899999999999999999 248888877776655
No 21
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=90.96 E-value=0.058 Score=43.24 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=31.0
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHHHHhcCC
Q 027792 105 TKAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALGH 148 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaILa~~~P~~~pFfsDEa~~~~~g~ 148 (219)
.+..+.|+.|+||||++|.+|+. +.||-|-|=+.-+.|.
T Consensus 59 tA~~~eL~~LpGiGp~~A~~II~-----~GpF~svedL~~V~GI 97 (134)
T 1s5l_U 59 NTNIAAFIQYRGLYPTLAKLIVK-----NAPYESVEDVLNIPGL 97 (134)
T ss_dssp TSCGGGGGGSTTCTHHHHHHHHH-----TCCCSSGGGGGGCTTC
T ss_pred ccCHHHHHHCCCCCHHHHHHHHH-----cCCCCCHHHHHhCCCC
Confidence 34577899999999999999993 4588887777767663
No 22
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=89.13 E-value=0.21 Score=34.86 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=26.7
Q ss_pred HHHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHHHHhcC
Q 027792 107 AVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALG 147 (219)
Q Consensus 107 al~~L~~LkGVGPATASaILa~~~P~~~pFfsDEa~~~~~g 147 (219)
....|..++||||.+|..|+... +|-+-+-+..+.|
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r-----~~~s~~eL~~v~G 60 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGR-----PYARVEDLLKVKG 60 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTC-----CCSSGGGGGGSTT
T ss_pred CHHHHHhCCCCCHHHHHHHHHHc-----ccCCHHHHHhCCC
Confidence 45678899999999999999964 5555555544544
No 23
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=87.56 E-value=0.13 Score=43.89 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=41.2
Q ss_pred hHHHhhhCCHHHHHHHHHHHHhhCccHHHHHHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHHHH-hcC
Q 027792 78 LLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGA-ALG 147 (219)
Q Consensus 78 L~~lV~sN~~~~V~~~t~~Af~~l~dv~~al~~L~~LkGVGPATASaILa~~~P~~~pFfsDEa~~~-~~g 147 (219)
+.+.|..|....|. . |+....+.+.+..|..|+||||++|-+|+.--.- -||-|=|-+.. +.|
T Consensus 106 v~~iV~~~E~~fv~-f----~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~--G~F~s~eDL~~RV~G 169 (205)
T 2i5h_A 106 IEHIIKQDEKKYVD-F----FNKADSITTRMHQLELLPGVGKKMMWAIIEERKK--RPFESFEDIAQRVKG 169 (205)
T ss_dssp HHHHHHTTHHHHHH-H----HC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHH--SCCCSHHHHHHHSTT
T ss_pred HHHHHHhchhhhhh-h----ccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhc--CCCCCHHHHHHhcCC
Confidence 34445555444442 2 3322334667788999999999999999998554 49989666644 665
No 24
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=87.18 E-value=1.1 Score=32.36 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=28.0
Q ss_pred hhCCHHHHHHHHHHHHhhCccHHHHHHHhhccCCCChHHHHHHHHhh
Q 027792 83 SSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 83 ~sN~~~~V~~~t~~Af~~l~dv~~al~~L~~LkGVGPATASaILa~~ 129 (219)
++++++.++.-...-+ ....+..|+.++||||.+|-.||..+
T Consensus 11 ~~~~~~~~~~~~~~~~-----~~~~~~~L~~IpgIG~~~A~~Ll~~f 52 (91)
T 2a1j_B 11 SQDPADLLMEKLEQDF-----VSRVTECLTTVKSVNKTDSQTLLTTF 52 (91)
T ss_dssp --CCSHHHHHHHHHHH-----HHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred ccCCHHHHhhhccCCH-----HHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 4566666665544433 23456778889999999999988864
No 25
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=86.41 E-value=0.49 Score=32.23 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=19.6
Q ss_pred HHHHhhccCCCChHHHHHHHHhhc
Q 027792 107 AVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 107 al~~L~~LkGVGPATASaILa~~~ 130 (219)
..+.|+.++||||.+|..|.+...
T Consensus 44 ~~~~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 44 SVAELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred CHHHHhcCCCCCHHHHHHHHHHHh
Confidence 356788999999999999988764
No 26
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=83.75 E-value=0.6 Score=39.69 Aligned_cols=29 Identities=31% Similarity=0.321 Sum_probs=22.0
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHhhcCC
Q 027792 104 LTKAVSELTVLKGVGPATASAVLAAYAPG 132 (219)
Q Consensus 104 v~~al~~L~~LkGVGPATASaILa~~~P~ 132 (219)
.+.-+..|.+++||||.||-+||+.+.|+
T Consensus 83 Er~lf~~L~sv~GIGpk~A~~Ils~~~~~ 111 (212)
T 2ztd_A 83 TRDLFLTLLSVSGVGPRLAMAALAVHDAP 111 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHSCHH
T ss_pred HHHHHHHhcCcCCcCHHHHHHHHHhCCHH
Confidence 44455667788888888888888887664
No 27
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=83.68 E-value=0.33 Score=35.73 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=28.2
Q ss_pred HHHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHHHHhcC
Q 027792 107 AVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALG 147 (219)
Q Consensus 107 al~~L~~LkGVGPATASaILa~~~P~~~pFfsDEa~~~~~g 147 (219)
....|..++||||.+|..|+...... -+|-+-+-+..+.|
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~r~~~-g~f~s~edL~~v~G 77 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGWRELH-GPFSQVEDLERVEG 77 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHHHHH-CCCSSGGGGGGSTT
T ss_pred CHHHHHHCCCCCHHHHHHHHHHHHhc-CCcCCHHHHHhCCC
Confidence 35678899999999999999986532 25655444444444
No 28
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=81.56 E-value=0.82 Score=38.08 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=21.8
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhhcC
Q 027792 105 TKAVSELTVLKGVGPATASAVLAAYAP 131 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaILa~~~P 131 (219)
+.-+..|..++||||.||-+||+.+.|
T Consensus 68 k~~f~~L~~v~GIGpk~A~~iL~~f~~ 94 (191)
T 1ixr_A 68 LALFELLLSVSGVGPKVALALLSALPP 94 (191)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHSCH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHhCCh
Confidence 445567888999999999999998666
No 29
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=80.07 E-value=1.3 Score=35.71 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=35.0
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh--cCC-CCCcccHHHHHHh---cCCCCCCCH
Q 027792 106 KAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGAA---LGHSKDYSL 154 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaILa~~--~P~-~~pFfsDEa~~~~---~g~~~kYt~ 154 (219)
...-+||.++|||+.||-.||... +|+ .+=-.+|+-+..+ ...+.+|.+
T Consensus 27 ~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~i 81 (146)
T 3u5c_S 27 KIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKI 81 (146)
T ss_dssp CTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTTC
T ss_pred chHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccCc
Confidence 344568999999999999999985 555 5566777766543 344556655
No 30
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=78.70 E-value=0.73 Score=31.58 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=18.8
Q ss_pred HHHhhccCCCChHHHHHHHHh
Q 027792 108 VSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 108 l~~L~~LkGVGPATASaILa~ 128 (219)
...|..++||||.++-.+|.-
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~ 23 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHH 23 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHH
T ss_pred HhHHHcCCCCCHHHHHHHHHH
Confidence 467889999999999999985
No 31
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=78.06 E-value=1.1 Score=37.51 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=21.3
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhhcC
Q 027792 105 TKAVSELTVLKGVGPATASAVLAAYAP 131 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaILa~~~P 131 (219)
+.-+..|..++||||.+|-+||+.+.|
T Consensus 69 k~~f~~L~~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 69 RTLFKELIKTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHSCH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHhhCCh
Confidence 445567888999999999999997665
No 32
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=77.88 E-value=2 Score=29.06 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.3
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh
Q 027792 106 KAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaILa~~ 129 (219)
.....|+.++||||.+|..|+..+
T Consensus 11 ~~~~~L~~i~giG~~~a~~Ll~~f 34 (75)
T 1x2i_A 11 RQRLIVEGLPHVSATLARRLLKHF 34 (75)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHc
Confidence 345678999999999999999864
No 33
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=77.76 E-value=1.8 Score=30.90 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.2
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh
Q 027792 106 KAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaILa~~ 129 (219)
.....|+.++||||.+|-.|+..+
T Consensus 16 ~~~~~L~~IpgIG~~~A~~Ll~~f 39 (89)
T 1z00_A 16 RVTECLTTVKSVNKTDSQTLLTTF 39 (89)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHC
Confidence 456778899999999999999864
No 34
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=77.58 E-value=1.6 Score=30.46 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=19.8
Q ss_pred HHHHhhccCCCChHHHHHHHHhh
Q 027792 107 AVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 107 al~~L~~LkGVGPATASaILa~~ 129 (219)
..+.|++++|||+.+|..|.+..
T Consensus 54 ~~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 54 SVEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp CHHHHTTSSSTTSHHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHHH
Confidence 36779999999999999998765
No 35
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=76.43 E-value=1.8 Score=30.91 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=20.8
Q ss_pred HHHHhhccCCCChHHHHHHHHhhc
Q 027792 107 AVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 107 al~~L~~LkGVGPATASaILa~~~ 130 (219)
..+.|+.++|||+.+|..|.+...
T Consensus 49 ~~~eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 49 SREDLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999864
No 36
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=76.42 E-value=3.1 Score=32.16 Aligned_cols=39 Identities=33% Similarity=0.398 Sum_probs=29.7
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh--cCC-CCCcccHHHHHH
Q 027792 106 KAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGA 144 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaILa~~--~P~-~~pFfsDEa~~~ 144 (219)
...-+|+.++|||+.||..||... +|+ .+--.+|+-+..
T Consensus 13 ~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~ 54 (114)
T 3r8n_M 13 HAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDT 54 (114)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHH
T ss_pred EeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHH
Confidence 345578999999999999999985 565 555677775543
No 37
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=75.42 E-value=1.8 Score=31.12 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.4
Q ss_pred HHHhhccCCCChHHHHHHHHhhc
Q 027792 108 VSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 108 l~~L~~LkGVGPATASaILa~~~ 130 (219)
.+.|++++|||+.+|..|+....
T Consensus 63 ~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 63 REDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHHHTSSSCCSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHh
Confidence 57799999999999999998863
No 38
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=73.35 E-value=1.5 Score=30.60 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.3
Q ss_pred HHhhccCCCChHHHHHHHHhh
Q 027792 109 SELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 109 ~~L~~LkGVGPATASaILa~~ 129 (219)
..|..++||||.||-.|+..+
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~f 44 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYM 44 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHc
Confidence 457889999999999999874
No 39
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=69.38 E-value=3.3 Score=30.08 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=20.6
Q ss_pred HHHHHhhccCCCChHHHHHHHHh
Q 027792 106 KAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaILa~ 128 (219)
.+...|..++||||.+.-.||.-
T Consensus 15 ~~~s~L~~IpGIG~kr~~~LL~~ 37 (84)
T 1z00_B 15 GPQDFLLKMPGVNAKNCRSLMHH 37 (84)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHH
T ss_pred cHHHHHHhCCCCCHHHHHHHHHH
Confidence 46788999999999999999985
No 40
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=69.12 E-value=4.7 Score=32.49 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=29.8
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhh--cCC-CCCcccHHHHH
Q 027792 105 TKAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMG 143 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaILa~~--~P~-~~pFfsDEa~~ 143 (219)
+...-+||.++|||+.||-.||... +|+ .+=-.+||-+.
T Consensus 19 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~ 60 (148)
T 3j20_O 19 KQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVK 60 (148)
T ss_dssp SCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHH
T ss_pred CEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHH
Confidence 3445678999999999999999985 565 55667777554
No 41
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=68.75 E-value=5.3 Score=32.43 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=30.7
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhh--cCC-CCCcccHHHHHHh
Q 027792 105 TKAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGAA 145 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaILa~~--~P~-~~pFfsDEa~~~~ 145 (219)
+...-+|+.++|||+.||-.||... +|+ .+--.+|+-+..+
T Consensus 26 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l 69 (155)
T 2xzm_M 26 RITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKI 69 (155)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHH
T ss_pred CEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHH
Confidence 3445678999999999999999985 554 5566777766533
No 42
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=68.58 E-value=2.6 Score=35.97 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=19.1
Q ss_pred HHHHHHHhhccCCCChHHHHHH
Q 027792 104 LTKAVSELTVLKGVGPATASAV 125 (219)
Q Consensus 104 v~~al~~L~~LkGVGPATASaI 125 (219)
+...++.|.+||||||-||.=+
T Consensus 21 l~~LI~~l~~LPGIG~KsA~Rl 42 (212)
T 3vdp_A 21 VAKLIEELSKLPGIGPKTAQRL 42 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHH
Confidence 6678999999999999998754
No 43
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=66.41 E-value=2 Score=38.42 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=18.1
Q ss_pred HHHHhhccCCCChHHHHHHHHhhc
Q 027792 107 AVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 107 al~~L~~LkGVGPATASaILa~~~ 130 (219)
.+..|+.|+|||+.||..|--...
T Consensus 55 ~~~~l~~lpGIG~~~A~kI~E~l~ 78 (335)
T 2bcq_A 55 SYQEACSIPGIGKRMAEKIIEILE 78 (335)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CHHHHhcCCCccHHHHHHHHHHHH
Confidence 344588888999888888877644
No 44
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=66.07 E-value=6.2 Score=31.94 Aligned_cols=51 Identities=24% Similarity=0.261 Sum_probs=35.1
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHhh--cCC-CCCcccHHHHHHh---cCCCCCCCH
Q 027792 104 LTKAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGAA---LGHSKDYSL 154 (219)
Q Consensus 104 v~~al~~L~~LkGVGPATASaILa~~--~P~-~~pFfsDEa~~~~---~g~~~kYt~ 154 (219)
-+...-+||.++|||+.||-.||... +|+ .+=-.+|+-...+ ...+.+|.+
T Consensus 23 ~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~i 79 (152)
T 3iz6_M 23 KQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKV 79 (152)
T ss_dssp SSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCC
T ss_pred CcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCc
Confidence 34456678999999999999999985 554 5556777655533 334445544
No 45
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=66.03 E-value=5.9 Score=35.33 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=20.9
Q ss_pred HHHHHHhhccCCCChHHHHHHHHh
Q 027792 105 TKAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaILa~ 128 (219)
..+|..|++++||||.||..+-.-
T Consensus 94 ~~~l~~l~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 94 SSSINFLTRVSGIGPSAARKFVDE 117 (335)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHc
Confidence 468999999999999999988543
No 46
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=65.22 E-value=2.3 Score=38.05 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=23.8
Q ss_pred HhhCccHHHHHHHhhccCCCChHHHHHHHHhhc
Q 027792 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 98 f~~l~dv~~al~~L~~LkGVGPATASaILa~~~ 130 (219)
+..++..-..+..|+.|+|||+.||..|--...
T Consensus 46 l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 46 IAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp HHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhCCccccCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 344443223444589999999999999988854
No 47
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=64.27 E-value=4.9 Score=31.55 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=29.6
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh--cCC-CCCcccHHHHHHh
Q 027792 106 KAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGAA 145 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaILa~~--~P~-~~pFfsDEa~~~~ 145 (219)
...-+|+.+.|||+.+|..||... +|+ .+--.+|+-+..+
T Consensus 14 ~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l 56 (126)
T 2vqe_M 14 RVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRL 56 (126)
T ss_dssp BHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHH
T ss_pred EeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHH
Confidence 345578999999999999999984 555 4455677666543
No 48
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=61.34 E-value=4.6 Score=38.43 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.7
Q ss_pred HHHHHHhhccCCCChHHHHHHHHh
Q 027792 105 TKAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaILa~ 128 (219)
...+..|++++||||.||-.|++.
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc
Confidence 457889999999999999999985
No 49
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=60.53 E-value=4.6 Score=34.85 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=18.7
Q ss_pred HHHHHHHhhccCCCChHHHHHH
Q 027792 104 LTKAVSELTVLKGVGPATASAV 125 (219)
Q Consensus 104 v~~al~~L~~LkGVGPATASaI 125 (219)
+..-++.|.+||||||-||.=+
T Consensus 7 l~~LI~~l~~LPGIG~KSA~Rl 28 (228)
T 1vdd_A 7 LVSLIRELSRLPGIGPKSAQRL 28 (228)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHhHCCCCCHHHHHHH
Confidence 4667899999999999999754
No 50
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=59.89 E-value=5.4 Score=35.98 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.4
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHh
Q 027792 104 LTKAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 104 v~~al~~L~~LkGVGPATASaILa~ 128 (219)
+-.+|..|++++||||.||..+-.-
T Consensus 97 ~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 97 RYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred chHHHHHHhCCCCCCHHHHHHHHHc
Confidence 4568999999999999999988543
No 51
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=58.26 E-value=2.1 Score=36.93 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=0.0
Q ss_pred HHHHHhhccCCCChHHHHHHHHh
Q 027792 106 KAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaILa~ 128 (219)
+....|..|+||||.+|-.|+..
T Consensus 12 a~~~~L~~IpGIGpk~a~~Ll~~ 34 (241)
T 1vq8_Y 12 EEYTELTDISGVGPSKAESLREA 34 (241)
T ss_dssp -----------------------
T ss_pred cchhHHhcCCCCCHHHHHHHHHc
Confidence 34557888999999999999986
No 52
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=57.58 E-value=5.8 Score=37.61 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.5
Q ss_pred HHHHHHhhccCCCChHHHHHHHHh
Q 027792 105 TKAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaILa~ 128 (219)
...+..|+++.||||.||-+|++.
T Consensus 89 ~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 89 PRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp CHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHh
Confidence 357889999999999999999986
No 53
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=56.51 E-value=15 Score=33.10 Aligned_cols=71 Identities=18% Similarity=0.108 Sum_probs=44.8
Q ss_pred ccCCCChHHHHHHHHhh----------cCCCCCcccHHHHHHhcCC------CCCCCHHHHHHHHHHHHHHHHHhhccCC
Q 027792 113 VLKGVGPATASAVLAAY----------APGVAPFMSDEAMGAALGH------SKDYSLKQYLLFADKLQAKAKELVSEEN 176 (219)
Q Consensus 113 ~LkGVGPATASaILa~~----------~P~~~pFfsDEa~~~~~g~------~~kYt~keY~~~~~~l~~~~~~L~~~~~ 176 (219)
.++||||-||.-+|.-+ +...+||=.+++....+.+ .+++...+...+.+-|+ ...
T Consensus 255 GVpGIG~KtA~kLl~~~gsle~il~~~~~~~~~~~~~~~~~~f~~p~v~~~~~~~w~~pd~~~l~~fl~--------~~~ 326 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYGGIEKIPKPILKSPIEVDVIAIKKYFLQPQVTDNYRIEWHTPDPDAVKRILV--------DEH 326 (363)
T ss_dssp CSTTCCHHHHHHHHHHHTSSTTSCGGGCCCSSCCCHHHHHHHHHSCCCCSCCCCCCCCCCHHHHHHHHT--------TTT
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHhcccccCCCCHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHH--------hcc
Confidence 46799999999999863 2224565556777665543 24555566665444332 123
Q ss_pred CCCHHHHHHHHHHHH
Q 027792 177 CFTPFDVERALWSSA 191 (219)
Q Consensus 177 ~~t~~~VEkalws~~ 191 (219)
+|+..+|+.++=-+.
T Consensus 327 ~f~~~rv~~~~~~l~ 341 (363)
T 3ory_A 327 DFSIDRVSTALERYV 341 (363)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 699999988875443
No 54
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=55.56 E-value=7 Score=35.58 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=21.5
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHh
Q 027792 104 LTKAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 104 v~~al~~L~~LkGVGPATASaILa~ 128 (219)
+-.+|..|++++||||.||..+-.-
T Consensus 116 ~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 116 RYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred chhHHHHHHccCCCCHHHHHHHHHc
Confidence 4568999999999999999988553
No 55
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=53.78 E-value=6.6 Score=35.05 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=19.1
Q ss_pred HHHHhhccCCCChHHHHHHHHh
Q 027792 107 AVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 107 al~~L~~LkGVGPATASaILa~ 128 (219)
.++.|++++||||.||..+-.-
T Consensus 94 ~l~ll~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 94 VLELFSNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHT
T ss_pred HHHHHhcCCCcCHHHHHHHHHc
Confidence 6788999999999999988543
No 56
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=53.00 E-value=26 Score=29.46 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.0
Q ss_pred HHHhhccCCCChHHHHHHHHhhcCC
Q 027792 108 VSELTVLKGVGPATASAVLAAYAPG 132 (219)
Q Consensus 108 l~~L~~LkGVGPATASaILa~~~P~ 132 (219)
.+.|++++|||+-||--|..-+...
T Consensus 122 ~~~L~~vpGIG~KtA~rIi~elk~k 146 (212)
T 2ztd_A 122 VAALTRVPGIGKRGAERMVLELRDK 146 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTTT
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999988776543
No 57
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=52.46 E-value=3.4 Score=37.34 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=22.9
Q ss_pred hhCccHHHHHHHhhccCCCChHHHHHHHHhhc
Q 027792 99 KSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 99 ~~l~dv~~al~~L~~LkGVGPATASaILa~~~ 130 (219)
..++..-..+..|+.|+|||+.||..|--...
T Consensus 51 ~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 51 KSLPCPVASLSQLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp HHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHH
T ss_pred HhCCcccCCHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34443222344599999999999999988754
No 58
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=51.55 E-value=3.8 Score=30.43 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=19.2
Q ss_pred HHHHhhccCCCChHHHHHHHHhh
Q 027792 107 AVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 107 al~~L~~LkGVGPATASaILa~~ 129 (219)
+|..|+.||+|||+++-.+-.++
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~G 24 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKAG 24 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHTT
T ss_pred CHHHHhhCCCCCHHHHHHHHHcC
Confidence 35668999999999999988885
No 59
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=50.48 E-value=1.4 Score=30.91 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhCccH-HHHHHHhhccCCCChHHHHHHHHhhcCCCCCcccHH
Q 027792 88 SSVKSASEKAFKSLPDL-TKAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDE 140 (219)
Q Consensus 88 ~~V~~~t~~Af~~l~dv-~~al~~L~~LkGVGPATASaILa~~~P~~~pFfsDE 140 (219)
..+.+....+|..+.|+ ..+.+.|+.++||+.++|..|.....- .|+|.++
T Consensus 18 ~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~--~~w~~~~ 69 (70)
T 1wcn_A 18 DLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN--ICWFGDE 69 (70)
T ss_dssp HHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH--HHTTCTT
T ss_pred HHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH--ccCcccc
Confidence 33444444444433333 235778888888888888887776532 3566543
No 60
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=49.29 E-value=6.5 Score=29.29 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=16.5
Q ss_pred HhhccCCCChHHHHHHHHhh
Q 027792 110 ELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 110 ~L~~LkGVGPATASaILa~~ 129 (219)
.+++|+||||+++--+-.-.
T Consensus 19 ~V~evpGIG~~~~~~L~~~G 38 (89)
T 1ci4_A 19 PVGSLAGIGEVLGKKLEERG 38 (89)
T ss_dssp CGGGSTTCCHHHHHHHHHTT
T ss_pred CcccCCCcCHHHHHHHHHcC
Confidence 47899999999998877743
No 61
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=48.19 E-value=11 Score=30.98 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.1
Q ss_pred HHHhhccCCCChHHHHHHHHhh
Q 027792 108 VSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 108 l~~L~~LkGVGPATASaILa~~ 129 (219)
...|..++||||.+|-.|+..+
T Consensus 161 ~~~L~~i~gVg~~~a~~Ll~~f 182 (219)
T 2bgw_A 161 LYILQSFPGIGRRTAERILERF 182 (219)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHc
Confidence 4468899999999999999974
No 62
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=44.71 E-value=6.9 Score=28.57 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=19.8
Q ss_pred HhhCccHHHHHHHhhccCCCChHHHHHHH
Q 027792 98 FKSLPDLTKAVSELTVLKGVGPATASAVL 126 (219)
Q Consensus 98 f~~l~dv~~al~~L~~LkGVGPATASaIL 126 (219)
++..|..-...+.+..|+||||-++.-|=
T Consensus 47 Lk~~P~~i~s~~e~~~L~giG~ki~~~L~ 75 (87)
T 2kp7_A 47 LQRYPLPLRSGKEAKILQHFGDRLCRMLD 75 (87)
T ss_dssp HHHCCSCCCSHHHHHTCTTTCHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHhhcccHHHHHHHH
Confidence 33445433445566789999999998764
No 63
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=44.62 E-value=5.4 Score=36.35 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=23.6
Q ss_pred HhhCccHHHHHHHhhccCCCChHHHHHHHHhhcC
Q 027792 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYAP 131 (219)
Q Consensus 98 f~~l~dv~~al~~L~~LkGVGPATASaILa~~~P 131 (219)
+..++..-..+..|++|+|||+.||..|--...-
T Consensus 69 l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~t 102 (381)
T 1jms_A 69 LKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIED 102 (381)
T ss_dssp HHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHHH
T ss_pred HHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3444432233445999999999999999877543
No 64
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=44.06 E-value=12 Score=31.89 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=18.4
Q ss_pred HHhhccCCCChHHHHHHHHhh
Q 027792 109 SELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 109 ~~L~~LkGVGPATASaILa~~ 129 (219)
..|..++||||.||-.+|.-+
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~F 188 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHF 188 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHc
Confidence 567899999999999999863
No 65
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=40.85 E-value=14 Score=35.39 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.9
Q ss_pred HHHhhccCCCChHHHHHHHHh
Q 027792 108 VSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 108 l~~L~~LkGVGPATASaILa~ 128 (219)
...|+.++||||+||.-+|--
T Consensus 467 eamLtAIaGIGp~tAeRLLEk 487 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKK 487 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 66
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=40.36 E-value=23 Score=36.50 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=25.3
Q ss_pred HHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHH
Q 027792 108 VSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAM 142 (219)
Q Consensus 108 l~~L~~LkGVGPATASaILa~~~P~~~pFfsDEa~ 142 (219)
-..|.-+.||||..|.+|+....-.+-+|-|-+-.
T Consensus 716 ~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L 750 (1030)
T 3psf_A 716 ASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQL 750 (1030)
T ss_dssp HTTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHH
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 67788999999999999998752223355554433
No 67
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=39.95 E-value=16 Score=26.96 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=18.8
Q ss_pred HHHhhccCCCChHHHHHHHHhh
Q 027792 108 VSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 108 l~~L~~LkGVGPATASaILa~~ 129 (219)
|..|+.||+|||+++-.+-.++
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vG 24 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAG 24 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTT
T ss_pred hHHhhcCCCCCHHHHHHHHHcC
Confidence 3468899999999999998875
No 68
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=39.95 E-value=23 Score=28.22 Aligned_cols=62 Identities=13% Similarity=0.233 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCcchHHHhhhCCH--HHHHHHHHHHH-hhCccHHHHHHHhh-ccCCCChH
Q 027792 54 PHINTTELSKLVRWKLTRGKWRPRLLDFVSSLDD--SSVKSASEKAF-KSLPDLTKAVSELT-VLKGVGPA 120 (219)
Q Consensus 54 ~~ltkdEL~~Lv~WKL~rGkfRP~L~~lV~sN~~--~~V~~~t~~Af-~~l~dv~~al~~L~-~LkGVGPA 120 (219)
.|+|.+||..|+.+=-+ |.-.+++..+|. .....++..-. ...|.+.+.+..+. +|.++|||
T Consensus 78 ~~fT~~El~~l~~FY~s-----p~Gkk~~~~~p~~~~~~~~~~q~~~~~~~p~~~~~~~em~kel~~~~~~ 143 (147)
T 3oao_A 78 TNFTESELKDLNAFYQS-----PLGKKVLEKMPRLTAESAQLTQAKLQGAVEPVNKLMADMDKELGVAAPA 143 (147)
T ss_dssp HHSCHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHTTCC---
T ss_pred HHCCHHHHHHHHHHHCC-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 59999999999998655 666688887764 22222333222 23455666666666 69999886
No 69
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=38.86 E-value=17 Score=30.06 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=20.5
Q ss_pred HHHHhhccCCCChHHHHHHHHhhc
Q 027792 107 AVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 107 al~~L~~LkGVGPATASaILa~~~ 130 (219)
-.+.|++++|||+.||--|..-+-
T Consensus 105 d~~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 105 DARLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHH
Confidence 467899999999999999987654
No 70
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=37.01 E-value=18 Score=30.05 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=27.8
Q ss_pred HHHhhhCCHHHHHHHHHHHHhhCccHHHHHHHhhccCCCChHHHHHHHHhh
Q 027792 79 LDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 79 ~~lV~sN~~~~V~~~t~~Af~~l~dv~~al~~L~~LkGVGPATASaILa~~ 129 (219)
+.+++.-.++.+.++... +-.+.|++++|||+-||--|..-+
T Consensus 87 ~~iL~~f~~~~l~~aI~~---------~d~~~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 87 LAILSGMSAQQFVNAVER---------EEVGALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHHHHSCHHHHHHHHHT---------TCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHhhCChHHHHHHHHh---------CCHHHHhhCCCCCHHHHHHHHHHH
Confidence 455555555444333322 246789999999999999987653
No 71
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=34.85 E-value=26 Score=36.83 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=25.6
Q ss_pred HHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHHH
Q 027792 108 VSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMG 143 (219)
Q Consensus 108 l~~L~~LkGVGPATASaILa~~~P~~~pFfsDEa~~ 143 (219)
-..|.-+.||||..|.+|+....-.+-+|-|-+-..
T Consensus 713 ~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~ 748 (1219)
T 3psi_A 713 ASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLI 748 (1219)
T ss_dssp HTTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHh
Confidence 678889999999999999987522233555544333
No 72
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=32.65 E-value=9.3 Score=32.65 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHhhccCCCChHHHHHHHHhh
Q 027792 108 VSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 108 l~~L~~LkGVGPATASaILa~~ 129 (219)
-..|..++||||.||-.||.-+
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~F 193 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNYF 193 (226)
T ss_dssp ----------------------
T ss_pred cccccccCCCCHHHHHHHHHHh
Confidence 3568899999999999999864
No 73
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=32.28 E-value=24 Score=26.86 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhCccH-HHHHHHhhccCCCChHHHHHHHHhh
Q 027792 87 DSSVKSASEKAFKSLPDL-TKAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 87 ~~~V~~~t~~Af~~l~dv-~~al~~L~~LkGVGPATASaILa~~ 129 (219)
+..+++.-..+|..+.++ .+.-+.|++++|||+++|--|+.+.
T Consensus 35 ~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 35 ANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEA 78 (114)
T ss_dssp HHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHH
Confidence 566666666667655443 2346789999999999999999985
No 74
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=29.97 E-value=7.5 Score=31.33 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=21.6
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHhh
Q 027792 103 DLTKAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 103 dv~~al~~L~~LkGVGPATASaILa~~ 129 (219)
+-+...-.|+.++|||+.+|..||...
T Consensus 56 ~~K~v~~aLt~IyGIG~~~A~~I~~~~ 82 (145)
T 3bbn_M 56 NHKRVEYSLQYIHGIGRSRSRQILLDL 82 (145)
T ss_dssp CSSBTTTGGGGSTTCCSSTTTGGGTTT
T ss_pred CCCEEEEeeeeecCccHHHHHHHHHHc
Confidence 334445678999999999999999864
No 75
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=29.74 E-value=29 Score=28.30 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=19.7
Q ss_pred HHHHhhccCCCChHHHHHHHHhh
Q 027792 107 AVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 107 al~~L~~LkGVGPATASaILa~~ 129 (219)
..+.|.+++|||+.+|..|...+
T Consensus 192 ~~e~L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 192 SKAEISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHHH
Confidence 35678999999999999998765
No 76
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=27.69 E-value=24 Score=33.47 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhCccHHHHH--HHhhccCCCChHHHHHHHHh
Q 027792 88 SSVKSASEKAFKSLPDLTKAV--SELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 88 ~~V~~~t~~Af~~l~dv~~al--~~L~~LkGVGPATASaILa~ 128 (219)
..++.+-..+|..+.|+..|+ ..|++++|||+-||.-|+..
T Consensus 108 k~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~ 150 (578)
T 2w9m_A 108 KKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILEN 150 (578)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHH
Confidence 344444444444445666664 37889999999999999654
No 77
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=27.35 E-value=13 Score=31.88 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=0.0
Q ss_pred HHhhCccHH-HHHHHhhccCCCChHHHHHHHHhh
Q 027792 97 AFKSLPDLT-KAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 97 Af~~l~dv~-~al~~L~~LkGVGPATASaILa~~ 129 (219)
.|..+.++. +....|+.++|||+.||.-|+...
T Consensus 35 gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l 68 (241)
T 1vq8_Y 35 GFESVEDVRGADQSALADVSGIGNALAARIKADV 68 (241)
T ss_dssp ----------------------------------
T ss_pred CCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHH
Confidence 344444443 346789999999999999998764
No 78
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=26.95 E-value=26 Score=30.73 Aligned_cols=24 Identities=8% Similarity=0.383 Sum_probs=18.6
Q ss_pred HHHHHhhc--------cCCCChHHHHHHHHhh
Q 027792 106 KAVSELTV--------LKGVGPATASAVLAAY 129 (219)
Q Consensus 106 ~al~~L~~--------LkGVGPATASaILa~~ 129 (219)
.-+.+|+. ++||||-||.-+|.-+
T Consensus 192 iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~ 223 (290)
T 1exn_A 192 ISLKAIMGDLGDNIRGVEGIGAKRGYNIIREF 223 (290)
T ss_dssp HHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHc
Confidence 34556665 8889999999999865
No 79
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=23.40 E-value=44 Score=28.74 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.2
Q ss_pred HHHHhhccCCCChHHHHHHHHhhcC
Q 027792 107 AVSELTVLKGVGPATASAVLAAYAP 131 (219)
Q Consensus 107 al~~L~~LkGVGPATASaILa~~~P 131 (219)
.+..|..++||+|..|.+|+.. .|
T Consensus 235 ~~~mL~~IpGVs~~~A~~I~~~-yp 258 (311)
T 2ziu_A 235 FARQLMQISGVSGDKAAAVLEH-YS 258 (311)
T ss_dssp HHHHHTTBTTCCHHHHHHHHHH-CS
T ss_pred HHHHHHhccCCCHHHHHHHHHH-CC
Confidence 5788999999999999999987 44
No 80
>2fsu_A Protein PHNH; C-P lyase, phosphonate metabolism, structural genomics montreal-kingston bacterial structural genomics initiative; HET: MSE; 1.70A {Escherichia coli} SCOP: c.67.2.1
Probab=22.83 E-value=65 Score=27.18 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=18.8
Q ss_pred CCCChHHHHHHHHhhcCCCCCcc
Q 027792 115 KGVGPATASAVLAAYAPGVAPFM 137 (219)
Q Consensus 115 kGVGPATASaILa~~~P~~~pFf 137 (219)
-|.+||+++++|++.|++. |++
T Consensus 58 ~~l~~A~~avlLTLlD~eT-plw 79 (210)
T 2fsu_A 58 QPLNIATTSVLLTLADNDT-PVW 79 (210)
T ss_dssp TTSCHHHHHHHHHHCCTTS-CEE
T ss_pred CCCCHHHHHHHHHHhCCCc-cce
Confidence 4679999999999999986 665
No 81
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=21.86 E-value=61 Score=31.26 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=15.5
Q ss_pred HHHHhhccCCCChHHHHHHHHh
Q 027792 107 AVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 107 al~~L~~LkGVGPATASaILa~ 128 (219)
..+.|..+.||||-+|..|...
T Consensus 542 ~~e~l~~i~giG~~~A~si~~f 563 (586)
T 4glx_A 542 SIEELQKVPDVGIVVASHVHNF 563 (586)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHH
T ss_pred CHHHHhcCCCccHHHHHHHHHH
Confidence 3566777777777777777663
No 82
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=21.59 E-value=47 Score=30.43 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHh--h----cCCCCcchHHHhhh---CCHHHHHHHHHHHHhhCccH-HHHHHHhhccCCCChHHHHHH
Q 027792 56 INTTELSKLVRWKL--T----RGKWRPRLLDFVSS---LDDSSVKSASEKAFKSLPDL-TKAVSELTVLKGVGPATASAV 125 (219)
Q Consensus 56 ltkdEL~~Lv~WKL--~----rGkfRP~L~~lV~s---N~~~~V~~~t~~Af~~l~dv-~~al~~L~~LkGVGPATASaI 125 (219)
++.+++.+++---- . .-.-.|+-..++++ -++..++... +-|..+..+ .+.++.|.+..|||+.+|..|
T Consensus 285 ld~~~~A~~Lg~~~eq~~~~~d~~VsprGyRiLs~IPrl~~~iae~Lv-~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~I 363 (377)
T 3c1y_A 285 PSPISISRVLGYDVQQAAQLDDVLVSARGYRLLKTVARIPLSIGYNVV-RMFKTLDQISKASVEDLKKVEGIGEKRARAI 363 (377)
T ss_dssp CCHHHHHHHTTCCCSCGGGGGGCBCCCCSHHHHHHTSCCCHHHHHHHH-HHHCSHHHHTTCCHHHHTTSTTCCHHHHHHH
T ss_pred CCHHHHHHHhccchhccccccCcccCchHHHHHhhCCCCCHHHHHHHH-HHhCCHHHHHhCCHHHHHhccCccHHHHHHH
Confidence 66666666665310 0 00122433334443 3445555544 446555544 345788899999999999887
Q ss_pred HH
Q 027792 126 LA 127 (219)
Q Consensus 126 La 127 (219)
--
T Consensus 364 re 365 (377)
T 3c1y_A 364 SE 365 (377)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 83
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=20.79 E-value=30 Score=34.60 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=24.4
Q ss_pred HHHHHhhccCCCChHHHHHHHHhhcCCCCCcccHH
Q 027792 106 KAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDE 140 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaILa~~~P~~~pFfsDE 140 (219)
+....|..++||||.+|..|+.--. ..-+|-|-+
T Consensus 505 As~~~L~~v~GiG~~~A~~Iv~yR~-~~G~f~sr~ 538 (785)
T 3bzc_A 505 ASAALLARISGLNSTLAQNIVAHRD-ANGAFRTRD 538 (785)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHHH-HHCCCSSGG
T ss_pred CCHHHHhhcCCCCHHHHHHHHHHHH-hcCCCCCHH
Confidence 3467889999999999999998632 223454443
No 84
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=20.61 E-value=92 Score=27.82 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=19.6
Q ss_pred cHHHHHHHhhc------cCCCChHHHHHHHHh
Q 027792 103 DLTKAVSELTV------LKGVGPATASAVLAA 128 (219)
Q Consensus 103 dv~~al~~L~~------LkGVGPATASaILa~ 128 (219)
+----+.+|+. ++||||-||--+|.-
T Consensus 220 ~q~id~~~L~G~D~~d~IpGIG~KtA~kLl~~ 251 (379)
T 1ul1_X 220 EQFVDLCILLGSDYCESIRGIGPKRAVDLIQK 251 (379)
T ss_dssp HHHHHHHHHHHCSSSCCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCCCCCCcCHHHHHHHHHH
Confidence 33344566666 999999999998875
No 85
>3ph0_A ASCE; type III secretion system, chapero; 2.40A {Aeromonas hydrophila} PDB: 2q1k_A
Probab=20.12 E-value=1.1e+02 Score=21.48 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=20.0
Q ss_pred hHHHhhhCCHHHHHHHHHHHHhhCcc
Q 027792 78 LLDFVSSLDDSSVKSASEKAFKSLPD 103 (219)
Q Consensus 78 L~~lV~sN~~~~V~~~t~~Af~~l~d 103 (219)
|-..++++++..|+++...-++.+.+
T Consensus 5 LE~~L~~~~~~~~~~i~~~L~qAl~~ 30 (67)
T 3ph0_A 5 LETRLSGADPVFARELHAQLVQALGD 30 (67)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 55778888888899998887765543
Done!