Query 027793
Match_columns 219
No_of_seqs 346 out of 3672
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 15:16:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.7 2.6E-16 5.7E-21 145.9 8.9 133 2-134 140-279 (968)
2 PLN00113 leucine-rich repeat r 99.6 5E-16 1.1E-20 144.1 10.0 137 1-137 163-306 (968)
3 KOG0617 Ras suppressor protein 99.6 1.2E-17 2.7E-22 121.2 -5.1 134 2-138 56-195 (264)
4 PLN03210 Resistant to P. syrin 99.6 5.3E-15 1.2E-19 138.9 9.3 120 3-124 612-734 (1153)
5 PLN03210 Resistant to P. syrin 99.5 3.3E-13 7.2E-18 126.9 11.2 152 1-166 633-841 (1153)
6 KOG0617 Ras suppressor protein 99.5 1.6E-15 3.5E-20 110.3 -3.6 134 2-138 33-172 (264)
7 KOG0444 Cytoskeletal regulator 99.4 1E-14 2.3E-19 124.3 -1.6 133 3-138 127-290 (1255)
8 KOG4194 Membrane glycoprotein 99.3 1.6E-12 3.4E-17 110.3 4.0 101 3-103 174-278 (873)
9 KOG0444 Cytoskeletal regulator 99.3 7.1E-14 1.5E-18 119.3 -4.4 133 3-138 33-172 (1255)
10 KOG0472 Leucine-rich repeat pr 99.3 2.2E-14 4.7E-19 116.5 -7.5 161 2-166 68-233 (565)
11 KOG0472 Leucine-rich repeat pr 99.3 2.6E-14 5.7E-19 116.0 -8.0 144 3-149 161-308 (565)
12 KOG0532 Leucine-rich repeat (L 99.3 5.3E-14 1.1E-18 118.5 -6.6 178 4-213 77-258 (722)
13 KOG4194 Membrane glycoprotein 99.3 6E-13 1.3E-17 112.7 -0.3 124 2-126 269-427 (873)
14 PRK15387 E3 ubiquitin-protein 99.2 3.2E-10 7E-15 101.6 12.3 29 95-124 343-371 (788)
15 PRK15370 E3 ubiquitin-protein 99.2 1.2E-10 2.7E-15 104.4 9.0 144 2-168 220-384 (754)
16 PLN03150 hypothetical protein; 99.1 1.6E-10 3.5E-15 102.5 8.7 108 26-133 419-533 (623)
17 PRK15370 E3 ubiquitin-protein 99.1 1.1E-10 2.4E-15 104.7 7.6 111 4-124 201-313 (754)
18 PRK15387 E3 ubiquitin-protein 99.1 6.9E-10 1.5E-14 99.5 9.6 116 4-133 203-319 (788)
19 KOG0618 Serine/threonine phosp 99.1 6.5E-12 1.4E-16 111.1 -3.1 128 3-132 242-446 (1081)
20 PLN03150 hypothetical protein; 99.1 5.8E-10 1.3E-14 99.0 8.5 107 4-110 420-531 (623)
21 PF14580 LRR_9: Leucine-rich r 99.1 1.6E-10 3.4E-15 86.0 4.0 118 3-124 20-149 (175)
22 PF14580 LRR_9: Leucine-rich r 99.0 3.8E-10 8.2E-15 84.0 5.7 115 9-127 4-125 (175)
23 cd00116 LRR_RI Leucine-rich re 99.0 5.1E-11 1.1E-15 97.1 -0.0 83 22-104 78-175 (319)
24 KOG0618 Serine/threonine phosp 99.0 3.9E-11 8.5E-16 106.3 -2.4 108 3-111 46-154 (1081)
25 PF13855 LRR_8: Leucine rich r 98.9 5.9E-10 1.3E-14 68.6 3.1 60 2-61 1-61 (61)
26 cd00116 LRR_RI Leucine-rich re 98.9 6.8E-10 1.5E-14 90.5 3.4 126 1-126 80-232 (319)
27 KOG1259 Nischarin, modulator o 98.8 2.2E-10 4.8E-15 90.5 -1.8 125 3-132 285-415 (490)
28 KOG4237 Extracellular matrix p 98.8 5E-10 1.1E-14 91.2 -2.1 123 3-126 68-199 (498)
29 COG4886 Leucine-rich repeat (L 98.7 8.1E-09 1.8E-13 87.0 3.2 103 2-105 116-220 (394)
30 PF13855 LRR_8: Leucine rich r 98.7 1.6E-08 3.5E-13 62.1 3.6 56 50-105 2-60 (61)
31 PRK15386 type III secretion pr 98.7 1.4E-07 3.1E-12 78.6 10.1 78 2-90 52-134 (426)
32 KOG0532 Leucine-rich repeat (L 98.7 1.6E-09 3.4E-14 92.0 -1.4 87 3-91 122-209 (722)
33 COG4886 Leucine-rich repeat (L 98.6 2.3E-08 5.1E-13 84.2 3.5 129 3-133 141-272 (394)
34 KOG1259 Nischarin, modulator o 98.5 2.8E-08 6E-13 78.8 0.2 106 23-131 282-389 (490)
35 KOG4658 Apoptotic ATPase [Sign 98.4 2E-07 4.3E-12 85.4 4.6 100 4-103 547-651 (889)
36 KOG3207 Beta-tubulin folding c 98.4 4E-08 8.6E-13 81.2 -0.4 102 3-104 122-232 (505)
37 KOG4658 Apoptotic ATPase [Sign 98.4 1.9E-07 4.1E-12 85.5 3.2 118 5-123 526-650 (889)
38 KOG3207 Beta-tubulin folding c 98.4 1.5E-07 3.2E-12 77.9 1.4 123 1-124 145-280 (505)
39 PF12799 LRR_4: Leucine Rich r 98.3 7.6E-07 1.7E-11 50.7 3.0 37 2-38 1-37 (44)
40 KOG1859 Leucine-rich repeat pr 98.3 1.1E-08 2.5E-13 89.2 -6.7 118 4-126 166-290 (1096)
41 KOG0531 Protein phosphatase 1, 98.2 2.6E-07 5.6E-12 78.5 -0.4 101 2-104 95-196 (414)
42 PF12799 LRR_4: Leucine Rich r 98.2 3.2E-06 6.8E-11 48.1 4.0 39 71-110 1-39 (44)
43 KOG3665 ZYG-1-like serine/thre 98.1 1.1E-06 2.3E-11 78.7 2.4 123 2-124 122-259 (699)
44 KOG2120 SCF ubiquitin ligase, 98.1 2.7E-07 5.8E-12 73.2 -1.3 149 2-160 210-373 (419)
45 KOG0531 Protein phosphatase 1, 98.1 9E-07 2E-11 75.2 1.5 120 3-125 73-196 (414)
46 KOG1644 U2-associated snRNP A' 98.1 4.1E-06 8.9E-11 62.9 4.6 78 26-105 43-124 (233)
47 KOG4579 Leucine-rich repeat (L 98.0 4.6E-07 1E-11 64.0 -2.0 106 4-111 29-139 (177)
48 KOG1909 Ran GTPase-activating 98.0 2.3E-06 4.9E-11 69.1 1.5 178 2-188 92-310 (382)
49 KOG4237 Extracellular matrix p 98.0 2.6E-06 5.6E-11 70.0 1.5 85 21-105 270-357 (498)
50 KOG2120 SCF ubiquitin ligase, 98.0 1.4E-07 3E-12 74.8 -6.0 127 4-130 187-328 (419)
51 KOG4579 Leucine-rich repeat (L 97.9 1E-06 2.3E-11 62.3 -1.9 105 26-133 28-140 (177)
52 KOG1859 Leucine-rich repeat pr 97.9 3.7E-07 8E-12 80.1 -5.4 101 2-105 187-290 (1096)
53 KOG1909 Ran GTPase-activating 97.8 5.9E-06 1.3E-10 66.7 0.7 103 3-105 158-281 (382)
54 PRK15386 type III secretion pr 97.8 3.6E-05 7.8E-10 64.5 4.6 84 47-138 50-137 (426)
55 KOG2739 Leucine-rich acidic nu 97.6 3.9E-05 8.4E-10 59.8 1.9 100 22-125 40-153 (260)
56 KOG3665 ZYG-1-like serine/thre 97.5 7.3E-05 1.6E-09 67.2 3.7 106 1-108 147-264 (699)
57 KOG1644 U2-associated snRNP A' 97.5 0.00025 5.5E-09 53.5 5.7 76 49-125 42-123 (233)
58 KOG2123 Uncharacterized conser 96.9 4.2E-05 9.2E-10 60.4 -4.0 95 3-100 20-123 (388)
59 KOG2123 Uncharacterized conser 96.8 4.8E-05 1E-09 60.1 -4.1 97 23-121 17-123 (388)
60 PF00560 LRR_1: Leucine Rich R 96.8 0.00035 7.5E-09 33.3 0.4 21 3-23 1-21 (22)
61 PF00560 LRR_1: Leucine Rich R 96.8 0.00052 1.1E-08 32.7 0.8 21 72-92 1-21 (22)
62 KOG2982 Uncharacterized conser 96.7 0.00041 9E-09 55.5 0.3 80 3-82 72-157 (418)
63 KOG2739 Leucine-rich acidic nu 96.7 0.00098 2.1E-08 52.1 2.2 99 4-103 45-152 (260)
64 KOG4341 F-box protein containi 96.6 8.7E-05 1.9E-09 61.5 -4.7 184 25-217 138-338 (483)
65 COG5238 RNA1 Ran GTPase-activa 96.4 0.0051 1.1E-07 48.8 4.2 41 22-62 89-133 (388)
66 KOG2982 Uncharacterized conser 96.2 0.0046 9.9E-08 49.7 3.0 131 1-132 96-266 (418)
67 PF13504 LRR_7: Leucine rich r 96.2 0.0041 8.8E-08 27.5 1.6 16 72-87 2-17 (17)
68 KOG1947 Leucine rich repeat pr 96.1 0.0012 2.5E-08 56.8 -0.6 105 24-128 187-308 (482)
69 PF13504 LRR_7: Leucine rich r 95.9 0.0045 9.7E-08 27.4 1.2 17 2-18 1-17 (17)
70 PF13306 LRR_5: Leucine rich r 95.2 0.11 2.3E-06 36.2 6.7 81 21-103 8-90 (129)
71 KOG4341 F-box protein containi 95.1 0.0066 1.4E-07 50.7 0.3 107 24-130 293-416 (483)
72 smart00369 LRR_TYP Leucine-ric 94.6 0.024 5.2E-07 27.9 1.6 20 1-20 1-20 (26)
73 smart00370 LRR Leucine-rich re 94.6 0.024 5.2E-07 27.9 1.6 20 1-20 1-20 (26)
74 KOG1947 Leucine rich repeat pr 94.6 0.016 3.4E-07 49.8 1.3 37 70-106 268-307 (482)
75 smart00370 LRR Leucine-rich re 94.5 0.041 8.8E-07 27.0 2.2 21 70-90 1-21 (26)
76 smart00369 LRR_TYP Leucine-ric 94.5 0.041 8.8E-07 27.0 2.2 21 70-90 1-21 (26)
77 KOG3864 Uncharacterized conser 94.1 0.011 2.4E-07 44.7 -0.5 77 27-103 103-185 (221)
78 COG5238 RNA1 Ran GTPase-activa 93.9 0.21 4.4E-06 40.0 6.1 82 2-84 30-133 (388)
79 PF13306 LRR_5: Leucine rich r 93.9 0.21 4.5E-06 34.7 5.8 98 2-103 12-112 (129)
80 KOG0473 Leucine-rich repeat pr 92.1 0.0029 6.4E-08 49.0 -6.3 84 21-105 38-122 (326)
81 KOG3864 Uncharacterized conser 91.7 0.097 2.1E-06 39.8 1.5 61 72-132 102-168 (221)
82 KOG0473 Leucine-rich repeat pr 89.4 0.004 8.7E-08 48.3 -7.7 57 47-103 40-97 (326)
83 smart00365 LRR_SD22 Leucine-ri 89.2 0.29 6.4E-06 24.2 1.5 17 1-17 1-17 (26)
84 smart00364 LRR_BAC Leucine-ric 89.1 0.25 5.3E-06 24.4 1.1 18 71-88 2-19 (26)
85 PF13516 LRR_6: Leucine Rich r 84.9 0.33 7.2E-06 23.1 0.3 14 71-84 2-15 (24)
86 smart00367 LRR_CC Leucine-rich 80.3 1.3 2.8E-05 21.5 1.4 12 117-128 4-15 (26)
87 smart00368 LRR_RI Leucine rich 76.2 1.8 4E-05 21.5 1.3 14 2-15 2-15 (28)
88 KOG4308 LRR-containing protein 73.1 0.12 2.6E-06 44.8 -5.9 13 23-35 113-125 (478)
89 KOG4308 LRR-containing protein 63.2 0.23 4.9E-06 43.2 -6.2 13 48-60 203-215 (478)
90 KOG3763 mRNA export factor TAP 60.9 3 6.5E-05 36.6 0.2 59 24-83 217-282 (585)
91 KOG3763 mRNA export factor TAP 60.4 5.3 0.00011 35.2 1.6 74 47-121 216-307 (585)
92 TIGR00864 PCC polycystin catio 32.1 28 0.00062 36.9 1.8 30 8-37 1-31 (2740)
93 TIGR00864 PCC polycystin catio 23.7 54 0.0012 35.0 2.1 30 55-84 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.66 E-value=2.6e-16 Score=145.93 Aligned_cols=133 Identities=29% Similarity=0.377 Sum_probs=74.2
Q ss_pred CCccEEEeecCCCcc-cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l 78 (219)
++|++|++++|.+.. +|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.+. +|..++.+++|++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 345555555555543 4555566666666666666555556656666666666666666543 4555555666666666
Q ss_pred cCCcCC-ccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCcc
Q 027793 79 SGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI 134 (219)
Q Consensus 79 ~~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~ 134 (219)
++|.++ .+|..++++++|++|++++|+..+.+|.. +++|+.|++++|.....+|..
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 279 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh
Confidence 666654 55555566666666666655544444432 245555555555443444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.65 E-value=5e-16 Score=144.09 Aligned_cols=137 Identities=24% Similarity=0.332 Sum_probs=113.8
Q ss_pred CCCccEEEeecCCCcc-cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~ 77 (219)
+++|++|++++|.+.. +|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+. +|..++.+++|++|+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 4689999999998875 8888899999999999999888888989999999999999998875 778888899999999
Q ss_pred ecCCcCC-ccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccC
Q 027793 78 LSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSC 137 (219)
Q Consensus 78 l~~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~ 137 (219)
+++|.++ .+|..++++++|+.|++++|...+.+|.. +.+|+.|++++|.....+|..+..
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 306 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence 9999876 77888888999999999888776677754 367888888887665666665543
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=1.2e-17 Score=121.19 Aligned_cols=134 Identities=28% Similarity=0.403 Sum_probs=84.0
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc---ccccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L~~L~l 78 (219)
.+|++|++++|+|+++|.+++.+++|+.|++.-| ....+|.+|+.++.|++||+..|... +|..|..++.|+.|.+
T Consensus 56 ~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL 134 (264)
T ss_pred hhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence 4555666666666666666666666666666554 34455666666666666666665543 5555666666666666
Q ss_pred cCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCCC---CCCCeEeccCCcCCCcCCccccCC
Q 027793 79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELP---FCLNYLNTSDCKRLQSLPKISSCL 138 (219)
Q Consensus 79 ~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~---~~L~~L~l~~~~~l~~lp~~~~~~ 138 (219)
+.|.++.+|..++++++|+.|.++.|. +-++|..+ ..|++|++.+ +.++.+|..+..+
T Consensus 135 ~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqg-nrl~vlppel~~l 195 (264)
T KOG0617|consen 135 GDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQG-NRLTVLPPELANL 195 (264)
T ss_pred cCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhccc-ceeeecChhhhhh
Confidence 666666667777777777777777743 44566543 5677777777 4567777665544
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.58 E-value=5.3e-15 Score=138.89 Aligned_cols=120 Identities=28% Similarity=0.507 Sum_probs=69.5
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecC
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~ 80 (219)
+|++|++.++.+..++..+..+++|+.|++++|...+.+| .++.+++|++|++++|... +|..++.+++|+.|++++
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 4555666666555555555566666666666655555555 3555666666666665533 555566666666666666
Q ss_pred Cc-CCccchhhhCCCCCCEEeccCCCCCCcCCCCCCCCCeEeccC
Q 027793 81 HN-FESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSD 124 (219)
Q Consensus 81 n~-l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~ 124 (219)
|. ++.+|..+ ++++|+.|++++|..++.+|....+|+.|++++
T Consensus 691 c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~ 734 (1153)
T PLN03210 691 CENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE 734 (1153)
T ss_pred CCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCC
Confidence 54 55555443 456666666666655555555444555555544
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.46 E-value=3.3e-13 Score=126.95 Aligned_cols=152 Identities=28% Similarity=0.446 Sum_probs=85.6
Q ss_pred CCCccEEEeecC-CCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCC-----
Q 027793 1 MELLQEIDLFLS-GIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSS----- 72 (219)
Q Consensus 1 l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~----- 72 (219)
+++|+.|+++++ .++.+|. ++.+++|++|++++|.....+|..++.+++|+.|++++|... +|..+ .+++
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 356677777654 3455554 566666777777666666666666666666666666665432 33322 3334
Q ss_pred ----------------CCEEEecCCcCCccchhh------------------------------hCCCCCCEEeccCCCC
Q 027793 73 ----------------LKCLELSGHNFESLPTGI------------------------------SQLQRLKCLHLINCNM 106 (219)
Q Consensus 73 ----------------L~~L~l~~n~l~~lp~~l------------------------------~~l~~L~~L~l~~~~~ 106 (219)
|++|++++|.++.+|..+ ...++|+.|++++|..
T Consensus 711 Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~ 790 (1153)
T PLN03210 711 LSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS 790 (1153)
T ss_pred CCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC
Confidence 444444444444444321 0113455666666655
Q ss_pred CCcCCCC---CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEcCCcccccc
Q 027793 107 IRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKG 166 (219)
Q Consensus 107 l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~ 166 (219)
+..+|.. +++|+.|++++|..++.+|...... .++.+++++|..+...
T Consensus 791 l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~------------sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 791 LVELPSSIQNLHKLEHLEIENCINLETLPTGINLE------------SLESLDLSGCSRLRTF 841 (1153)
T ss_pred ccccChhhhCCCCCCEEECCCCCCcCeeCCCCCcc------------ccCEEECCCCCccccc
Confidence 6666643 3566777777776666666544211 4456777777666544
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.6e-15 Score=110.25 Aligned_cols=134 Identities=28% Similarity=0.365 Sum_probs=115.5
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecC
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~ 80 (219)
.+++.|.++.|+++.+|+.+..+.+|+.|++.+| .+..+|..++++++|+.|++.-|+.. +|.+|+.++.|+.||+++
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 5677888999999999999999999999999987 66788999999999999999988876 899999999999999999
Q ss_pred CcCC--ccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccCC
Q 027793 81 HNFE--SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCL 138 (219)
Q Consensus 81 n~l~--~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~ 138 (219)
|.+. .+|..|..+..|+.|+++.| ..+.+|.. +++|+.|.+.+| .+-++|..++.+
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~l 172 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDL 172 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccC-chhhCcHHHHHH
Confidence 9986 88999988999999999985 55777765 467778888885 566788877765
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.42 E-value=1e-14 Score=124.34 Aligned_cols=133 Identities=29% Similarity=0.347 Sum_probs=89.4
Q ss_pred CccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-------------------
Q 027793 3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL------------------- 62 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~------------------- 62 (219)
++-+|++++|+|..+|.. +-+++-|-.||+++| ....+|+.+..+..|++|++++|...
T Consensus 127 n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred CcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence 344556666666666655 445566666666665 34556666667777777777777654
Q ss_pred --------ccccCCCCCCCCEEEecCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcC
Q 027793 63 --------ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSL 131 (219)
Q Consensus 63 --------~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~l 131 (219)
+|.++..+.+|..+|++.|.+..+|+++-++++|+.|++|+|. ++.+... -.+|++|+++. ++++.+
T Consensus 206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSr-NQLt~L 283 (1255)
T KOG0444|consen 206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSR-NQLTVL 283 (1255)
T ss_pred cccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhcccc-chhccc
Confidence 6777777888888888888888888888888888888888854 4444322 14666777766 456666
Q ss_pred CccccCC
Q 027793 132 PKISSCL 138 (219)
Q Consensus 132 p~~~~~~ 138 (219)
|..+..+
T Consensus 284 P~avcKL 290 (1255)
T KOG0444|consen 284 PDAVCKL 290 (1255)
T ss_pred hHHHhhh
Confidence 6555444
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.30 E-value=1.6e-12 Score=110.26 Aligned_cols=101 Identities=23% Similarity=0.330 Sum_probs=61.9
Q ss_pred CccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccccc--ccCCCCCCCCEEEec
Q 027793 3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLELS 79 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p--~~~~~l~~L~~L~l~ 79 (219)
++++|++++|+|+.+... |..+.+|.+|.++.|++...-+..|+++++|+.|++..|.+.+- ..|.++++|+.|.+.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 577777777777776543 77777777778877765554445666788888888888876622 234455555555555
Q ss_pred CCcCCccch-hhhCCCCCCEEeccC
Q 027793 80 GHNFESLPT-GISQLQRLKCLHLIN 103 (219)
Q Consensus 80 ~n~l~~lp~-~l~~l~~L~~L~l~~ 103 (219)
.|.+..+.+ .|..+.++++|+++.
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~ 278 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLET 278 (873)
T ss_pred hcCcccccCcceeeecccceeeccc
Confidence 555544433 233444555555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.29 E-value=7.1e-14 Score=119.34 Aligned_cols=133 Identities=21% Similarity=0.331 Sum_probs=85.5
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc---ccccCCCCCCCCEEEec
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L~~L~l~ 79 (219)
.++.|.+...++..+|..++.+.+|++|.+++|+..+. -..+..++.|+.+++..|+.. +|..+..+..|..||++
T Consensus 33 ~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLS 111 (1255)
T ss_pred heeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecc
Confidence 34444444444444555555555555555555433222 223444455555555555443 78888888889999999
Q ss_pred CCcCCccchhhhCCCCCCEEeccCCCCCCcCCCCC----CCCCeEeccCCcCCCcCCccccCC
Q 027793 80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPELP----FCLNYLNTSDCKRLQSLPKISSCL 138 (219)
Q Consensus 80 ~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~----~~L~~L~l~~~~~l~~lp~~~~~~ 138 (219)
+|++++.|..+...+++-.|++|+ +.+..||..+ .-|-.||+++ +.++.+|..+.++
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRL 172 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHH
Confidence 999998898888888888899888 4567788642 4566778877 5688888766654
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.29 E-value=2.2e-14 Score=116.47 Aligned_cols=161 Identities=27% Similarity=0.343 Sum_probs=121.4
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecC
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~ 80 (219)
..+.+|++.+|++.++|+.++.+..++.++.++| ....+|+.++.+.++..++.+.|... +|+.++.+..++.++..+
T Consensus 68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATN 146 (565)
T ss_pred cceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccc
Confidence 4578889999999999999999999999999987 55678888889999999999988876 888888888999999999
Q ss_pred CcCCccchhhhCCCCCCEEeccCCCCCCcCCC-C--CCCCCeEeccCCcCCCcCCccccCCC-CCccccCCCCCCCeEEE
Q 027793 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE-L--PFCLNYLNTSDCKRLQSLPKISSCLE-TPSNQTRGNSYLPVMFK 156 (219)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-~--~~~L~~L~l~~~~~l~~lp~~~~~~~-~~~~~~~~~~~~l~~l~ 156 (219)
|+++++|.++..+.+|..+++.+|+ ++.+|+ . +..|+++|.-. +.++.+|..++.+. .-...+..|.+.... .
T Consensus 147 N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-e 223 (565)
T KOG0472|consen 147 NQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFLP-E 223 (565)
T ss_pred cccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccCC-C
Confidence 9999999998888888889888865 444543 2 36788888766 56888888777652 111111223232233 5
Q ss_pred EcCCcccccc
Q 027793 157 FVNCVKLHKG 166 (219)
Q Consensus 157 ~~~c~~l~~~ 166 (219)
|.+|..|.+.
T Consensus 224 f~gcs~L~El 233 (565)
T KOG0472|consen 224 FPGCSLLKEL 233 (565)
T ss_pred CCccHHHHHH
Confidence 6677666664
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.27 E-value=2.6e-14 Score=116.00 Aligned_cols=144 Identities=29% Similarity=0.341 Sum_probs=116.1
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCCc
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN 82 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n~ 82 (219)
++..+++.+|+++.+|+..-.++.|++||...| ..+.+|+.++.+.+|+.|++..|.+..-+.|.++..|+.++++.|.
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~ 239 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQ 239 (565)
T ss_pred HHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccH
Confidence 345667778888887776555888888888776 7788899999999999999999998733389999999999999999
Q ss_pred CCccchhhh-CCCCCCEEeccCCCCCCcCCCCC---CCCCeEeccCCcCCCcCCccccCCCCCccccCCCC
Q 027793 83 FESLPTGIS-QLQRLKCLHLINCNMIRSLPELP---FCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNS 149 (219)
Q Consensus 83 l~~lp~~l~-~l~~L~~L~l~~~~~l~~lp~~~---~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~ 149 (219)
|+.+|.... +++++..||++. +.++++|+.+ .+|+.||+++ +.++.+|...+.+......+.||.
T Consensus 240 i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 240 IEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred HHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccC-CccccCCcccccceeeehhhcCCc
Confidence 999998775 899999999999 5678899764 6889999988 578999988887744444444443
No 12
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=5.3e-14 Score=118.51 Aligned_cols=178 Identities=26% Similarity=0.304 Sum_probs=144.6
Q ss_pred ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCc
Q 027793 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHN 82 (219)
Q Consensus 4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~ 82 (219)
-...|++.|++.++|..+..+..|..+.++.| ....+|..+.++..|.++|++.|++. +|..+..++ |+.|.+++|+
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 34678889999999999888889999999988 55678889999999999999999987 788777776 9999999999
Q ss_pred CCccchhhhCCCCCCEEeccCCCCCCcCCCCC---CCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEcC
Q 027793 83 FESLPTGISQLQRLKCLHLINCNMIRSLPELP---FCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVN 159 (219)
Q Consensus 83 l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~---~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~ 159 (219)
++.+|..++....|..|+.+.| .+..+|..+ .+|+.|.+.. +.+..+|+....+ .+..++| .
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~L------------pLi~lDf-S 219 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSL------------PLIRLDF-S 219 (722)
T ss_pred cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCC------------ceeeeec-c
Confidence 9999999998899999999985 566677543 6788888888 5688888888777 7788999 5
Q ss_pred CcccccccccchhHhHHHHHhhhCCCcccccccceeccCeeeeeeEEeeceeec
Q 027793 160 CVKLHKGTERNFFANFQRRVHNALPGILHRKVDRKLIDGVESAFVYVEVGFHTA 213 (219)
Q Consensus 160 c~~l~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 213 (219)
|.++..++. -|.. .+++..+.++.++++.+|+.+|.+|.
T Consensus 220 cNkis~iPv--~fr~-------------m~~Lq~l~LenNPLqSPPAqIC~kGk 258 (722)
T KOG0532|consen 220 CNKISYLPV--DFRK-------------MRHLQVLQLENNPLQSPPAQICEKGK 258 (722)
T ss_pred cCceeecch--hhhh-------------hhhheeeeeccCCCCCChHHHHhccc
Confidence 668877764 1111 34666777888888888888887653
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.26 E-value=6e-13 Score=112.72 Aligned_cols=124 Identities=23% Similarity=0.260 Sum_probs=66.2
Q ss_pred CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--cc--------------
Q 027793 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--IL-------------- 64 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p-------------- 64 (219)
.++++|+++.|+++.+.. ++..+++|+.|+++.|.+...-++++.-.++|++|+++.|.+. -+
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 345555555555555433 2445555555555555444444444445555555555555544 11
Q ss_pred ----------ccCCCCCCCCEEEecCCcCC-cc---chhhhCCCCCCEEeccCCCCCCcCCC----CCCCCCeEeccCCc
Q 027793 65 ----------SGLSSLSSLKCLELSGHNFE-SL---PTGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCK 126 (219)
Q Consensus 65 ----------~~~~~l~~L~~L~l~~n~l~-~l---p~~l~~l~~L~~L~l~~~~~l~~lp~----~~~~L~~L~l~~~~ 126 (219)
..|..+++|+.||+++|.++ .+ ...+..+++|+.|++.| +.++.+|. .+..|++|++.+|.
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence 23455566666666666644 22 22345566666666666 34555653 24567777776644
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.17 E-value=3.2e-10 Score=101.59 Aligned_cols=29 Identities=31% Similarity=0.326 Sum_probs=13.0
Q ss_pred CCCEEeccCCCCCCcCCCCCCCCCeEeccC
Q 027793 95 RLKCLHLINCNMIRSLPELPFCLNYLNTSD 124 (219)
Q Consensus 95 ~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~ 124 (219)
+|+.|++++| .+..+|..+.+|+.|++++
T Consensus 343 ~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~ 371 (788)
T PRK15387 343 GLQELSVSDN-QLASLPTLPSELYKLWAYN 371 (788)
T ss_pred ccceEecCCC-ccCCCCCCCcccceehhhc
Confidence 4555555543 3334444444444444443
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.16 E-value=1.2e-10 Score=104.40 Aligned_cols=144 Identities=20% Similarity=0.246 Sum_probs=84.3
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecC
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~ 80 (219)
++|++|++++|.++.+|..+. .+|+.|++++|.+ ..+|..+. .+|+.|++++|.+. +|..+. ++|+.|++++
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L-~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI-TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD 292 (754)
T ss_pred cCCCEEECCCCccccCChhhh--ccccEEECcCCcc-CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC
Confidence 468888888888888876543 4677888887754 35665543 46777777777655 554442 4677777777
Q ss_pred CcCCccchhhh-------------------CCCCCCEEeccCCCCCCcCCCC-CCCCCeEeccCCcCCCcCCccccCCCC
Q 027793 81 HNFESLPTGIS-------------------QLQRLKCLHLINCNMIRSLPEL-PFCLNYLNTSDCKRLQSLPKISSCLET 140 (219)
Q Consensus 81 n~l~~lp~~l~-------------------~l~~L~~L~l~~~~~l~~lp~~-~~~L~~L~l~~~~~l~~lp~~~~~~~~ 140 (219)
|.++.+|..+. -.++|+.|++++|. +..+|.. +++|+.|++++| .+..+|..+.
T Consensus 293 N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~lp---- 366 (754)
T PRK15370 293 NSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKN-QITVLPETLP---- 366 (754)
T ss_pred CccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCc-cccCChhhcCcccEEECCCC-CCCcCChhhc----
Confidence 77766654332 01344555555432 3334432 245566666554 3444443221
Q ss_pred CccccCCCCCCCeEEEEcCCcccccccc
Q 027793 141 PSNQTRGNSYLPVMFKFVNCVKLHKGTE 168 (219)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~~c~~l~~~~~ 168 (219)
..++.|++++| .+..++.
T Consensus 367 ---------~~L~~LdLs~N-~Lt~LP~ 384 (754)
T PRK15370 367 ---------PTITTLDVSRN-ALTNLPE 384 (754)
T ss_pred ---------CCcCEEECCCC-cCCCCCH
Confidence 14557888777 5666554
No 16
>PLN03150 hypothetical protein; Provisional
Probab=99.14 E-value=1.6e-10 Score=102.50 Aligned_cols=108 Identities=29% Similarity=0.421 Sum_probs=90.8
Q ss_pred CCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecCCcCC-ccchhhhCCCCCCEEecc
Q 027793 26 GLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSGHNFE-SLPTGISQLQRLKCLHLI 102 (219)
Q Consensus 26 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~ 102 (219)
.++.|++++|.+.+.+|..+..+++|+.|++++|.+. +|..++.+++|+.|++++|.++ .+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778899998888889999999999999999999875 7888899999999999999987 788889999999999999
Q ss_pred CCCCCCcCCCCC----CCCCeEeccCCcCCCcCCc
Q 027793 103 NCNMIRSLPELP----FCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 103 ~~~~l~~lp~~~----~~L~~L~l~~~~~l~~lp~ 133 (219)
+|+..+.+|..+ .++..+++.+|..+...|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 988888888654 3556788888877766553
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=1.1e-10 Score=104.66 Aligned_cols=111 Identities=26% Similarity=0.371 Sum_probs=48.7
Q ss_pred ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCc
Q 027793 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHN 82 (219)
Q Consensus 4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~ 82 (219)
|+.|++++|+++.+|..+. .+|++|++++|.+ ..+|..+. ++|+.|++++|.+. +|..+. .+|+.|++++|+
T Consensus 201 L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 201 ITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK 273 (754)
T ss_pred CcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc
Confidence 4444555555544444322 3455555554432 23343221 24555555555443 333322 245555555555
Q ss_pred CCccchhhhCCCCCCEEeccCCCCCCcCCCCC-CCCCeEeccC
Q 027793 83 FESLPTGISQLQRLKCLHLINCNMIRSLPELP-FCLNYLNTSD 124 (219)
Q Consensus 83 l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~-~~L~~L~l~~ 124 (219)
++.+|..+. ++|+.|++++| .++.+|..+ .+|+.|++++
T Consensus 274 L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~ 313 (754)
T PRK15370 274 ISCLPENLP--EELRYLSVYDN-SIRTLPAHLPSGITHLNVQS 313 (754)
T ss_pred cCccccccC--CCCcEEECCCC-ccccCcccchhhHHHHHhcC
Confidence 555554332 34555555553 233344321 2344444444
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.07 E-value=6.9e-10 Score=99.52 Aligned_cols=116 Identities=26% Similarity=0.274 Sum_probs=72.4
Q ss_pred ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCc
Q 027793 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHN 82 (219)
Q Consensus 4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~ 82 (219)
-..|+++.+.++.+|+.+. ++|+.|++.+|. ++.+|. .+++|++|++++|.+. +|.. .++|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCc-CCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 3567888888888887654 367888888774 344554 2567888888887765 4432 3466677777777
Q ss_pred CCccchhhhCCCCCCEEeccCCCCCCcCCCCCCCCCeEeccCCcCCCcCCc
Q 027793 83 FESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 83 l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~~~~l~~lp~ 133 (219)
++.+|..+ .+|+.|++++| .++.+|..+++|+.|++++| .++.+|.
T Consensus 274 L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N-~L~~Lp~ 319 (788)
T PRK15387 274 LTHLPALP---SGLCKLWIFGN-QLTSLPVLPPGLQELSVSDN-QLASLPA 319 (788)
T ss_pred hhhhhhch---hhcCEEECcCC-ccccccccccccceeECCCC-ccccCCC
Confidence 66665422 34556666664 34556655566666666664 4444443
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.07 E-value=6.5e-12 Score=111.11 Aligned_cols=128 Identities=27% Similarity=0.372 Sum_probs=80.0
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCC----------------------CCCccccCCCCCCcEEeccccc
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKL----------------------GFLPESLCNLKKLQKLCLSQCR 60 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~----------------------~~~p~~~~~l~~L~~L~l~~~~ 60 (219)
+|++++++.|+++.+|.+++.+.+|+.++..+|.+. ..+|+....+++|++|++..|.
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 567777777777777777777777777777766431 2334445556677777777766
Q ss_pred cc---------------------------------------------------ccccCCCCCCCCEEEecCCcCCccchh
Q 027793 61 CL---------------------------------------------------ILSGLSSLSSLKCLELSGHNFESLPTG 89 (219)
Q Consensus 61 ~~---------------------------------------------------~p~~~~~l~~L~~L~l~~n~l~~lp~~ 89 (219)
+. ..+.+.++++|+.|++++|++.++|++
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence 54 011344567788888888888877764
Q ss_pred -hhCCCCCCEEeccCCCCCCcCCCCC---CCCCeEeccCCcCCCcCC
Q 027793 90 -ISQLQRLKCLHLINCNMIRSLPELP---FCLNYLNTSDCKRLQSLP 132 (219)
Q Consensus 90 -l~~l~~L~~L~l~~~~~l~~lp~~~---~~L~~L~l~~~~~l~~lp 132 (219)
+.++..|++|++||| .++.+|... +.|++|...+ +.+..+|
T Consensus 402 ~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fP 446 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFP 446 (1081)
T ss_pred HHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeech
Confidence 467777788888874 455555432 3344444333 3344444
No 20
>PLN03150 hypothetical protein; Provisional
Probab=99.05 E-value=5.8e-10 Score=98.97 Aligned_cols=107 Identities=21% Similarity=0.373 Sum_probs=72.1
Q ss_pred ccEEEeecCCCcc-cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecC
Q 027793 4 LQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 4 L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~ 80 (219)
++.|++++|.++. +|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+. +|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 4566777776665 6666777777777777777666677777777777777777777665 666677777777777777
Q ss_pred CcCC-ccchhhhCC-CCCCEEeccCCCCCCcC
Q 027793 81 HNFE-SLPTGISQL-QRLKCLHLINCNMIRSL 110 (219)
Q Consensus 81 n~l~-~lp~~l~~l-~~L~~L~l~~~~~l~~l 110 (219)
|.++ .+|..++.. .++..+++.+|..+...
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCC
Confidence 7766 667666543 35566666666544433
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1.6e-10 Score=86.02 Aligned_cols=118 Identities=27% Similarity=0.325 Sum_probs=48.9
Q ss_pred CccEEEeecCCCcccCcccc-CCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccC-CCCCCCCEEEec
Q 027793 3 LLQEIDLFLSGIKELPSSIE-HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGL-SSLSSLKCLELS 79 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~-~~l~~L~~L~l~ 79 (219)
++++|++++|.|+.+.. ++ .+.+|+.|++++|.+.. ++ .+..++.|++|++++|.+. +...+ ..+++|+.|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ----------------S---TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccccc-hhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 57899999999998865 55 58899999999996544 43 5778999999999999987 43444 358999999999
Q ss_pred CCcCCccc--hhhhCCCCCCEEeccCCCCCCcCCC-------CCCCCCeEeccC
Q 027793 80 GHNFESLP--TGISQLQRLKCLHLINCNMIRSLPE-------LPFCLNYLNTSD 124 (219)
Q Consensus 80 ~n~l~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~-------~~~~L~~L~l~~ 124 (219)
+|+|..+. ..+..+++|+.|++.+|+... .+. .+++|+.||-..
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEE
Confidence 99987543 356789999999999987543 333 147888888644
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=3.8e-10 Score=83.99 Aligned_cols=115 Identities=30% Similarity=0.326 Sum_probs=38.5
Q ss_pred eecCCCcccCccccCCCCCcEEeccCCCCCCCCccccC-CCCCCcEEecccccccccccCCCCCCCCEEEecCCcCCccc
Q 027793 9 LFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLC-NLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLP 87 (219)
Q Consensus 9 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp 87 (219)
+..+.|...+. +.+..++++|++.+|.+.. + +.++ .+.+|+.|++++|.+.--+.+..++.|+.|++++|.|+++.
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C
T ss_pred ccccccccccc-ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc
Confidence 44455666665 5566688999999996544 3 2455 58899999999999884457888999999999999999887
Q ss_pred hhh-hCCCCCCEEeccCCCCCCcCCCC-----CCCCCeEeccCCcC
Q 027793 88 TGI-SQLQRLKCLHLINCNMIRSLPEL-----PFCLNYLNTSDCKR 127 (219)
Q Consensus 88 ~~l-~~l~~L~~L~l~~~~~l~~lp~~-----~~~L~~L~l~~~~~ 127 (219)
..+ ..+++|+.|++++| .+..+.+. +++|+.|++.+|+-
T Consensus 81 ~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp HHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcc
Confidence 666 46899999999985 45555432 47888888888753
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.01 E-value=5.1e-11 Score=97.14 Aligned_cols=83 Identities=28% Similarity=0.223 Sum_probs=34.3
Q ss_pred cCCCCCcEEeccCCCCCCCCccccCCCCC---CcEEeccccccc------ccccCCCC-CCCCEEEecCCcCC-----cc
Q 027793 22 EHIEGLKCLRLNSCTKLGFLPESLCNLKK---LQKLCLSQCRCL------ILSGLSSL-SSLKCLELSGHNFE-----SL 86 (219)
Q Consensus 22 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~---L~~L~l~~~~~~------~p~~~~~l-~~L~~L~l~~n~l~-----~l 86 (219)
..+++|+.|++++|.+.+..+..+..+.+ |++|++++|... +...+..+ ++|+.|++++|.++ .+
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 33445555555544443333333322222 555555544432 11223333 44455555555444 12
Q ss_pred chhhhCCCCCCEEeccCC
Q 027793 87 PTGISQLQRLKCLHLINC 104 (219)
Q Consensus 87 p~~l~~l~~L~~L~l~~~ 104 (219)
+..+..+++|++|++++|
T Consensus 158 ~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 158 AKALRANRDLKELNLANN 175 (319)
T ss_pred HHHHHhCCCcCEEECcCC
Confidence 223333444555555444
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.97 E-value=3.9e-11 Score=106.31 Aligned_cols=108 Identities=29% Similarity=0.359 Sum_probs=88.1
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCC
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGH 81 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n 81 (219)
+|+.|++++|.+..+|..+..+.+|+.|+++.| .+...|.+...+.+|+++.+.+|... +|..+..+++|++|++++|
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 378899999998888888888889999999887 66777888888899999999988876 8888888999999999999
Q ss_pred cCCccchhhhCCCCCCEEeccCCCCCCcCC
Q 027793 82 NFESLPTGISQLQRLKCLHLINCNMIRSLP 111 (219)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp 111 (219)
.+..+|..+..+..+..+..++|..+..++
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg 154 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASNNEKIQRLG 154 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhcchhhhhhc
Confidence 988888877777777777777763333333
No 25
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=5.9e-10 Score=68.57 Aligned_cols=60 Identities=25% Similarity=0.385 Sum_probs=48.6
Q ss_pred CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccc
Q 027793 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC 61 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 61 (219)
++|++|++++|+++.+|+. |..+++|++|++++|.+...-|..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5788999999999998864 78899999999998876655556778888888888888763
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=6.8e-10 Score=90.51 Aligned_cols=126 Identities=27% Similarity=0.268 Sum_probs=90.9
Q ss_pred CCCccEEEeecCCCcc-cCccccCCCC---CcEEeccCCCCCC----CCccccCCC-CCCcEEeccccccc------ccc
Q 027793 1 MELLQEIDLFLSGIKE-LPSSIEHIEG---LKCLRLNSCTKLG----FLPESLCNL-KKLQKLCLSQCRCL------ILS 65 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~-lp~~~~~l~~---L~~L~l~~~~~~~----~~p~~~~~l-~~L~~L~l~~~~~~------~p~ 65 (219)
+++|+.|++++|.+.. .+..+..+.+ |++|++++|.+.. .+...+..+ ++|+.|++++|.+. ++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 3689999999998875 4444444444 9999999987653 233355666 89999999999866 344
Q ss_pred cCCCCCCCCEEEecCCcCC-----ccchhhhCCCCCCEEeccCCCCCCc----CC---CCCCCCCeEeccCCc
Q 027793 66 GLSSLSSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINCNMIRS----LP---ELPFCLNYLNTSDCK 126 (219)
Q Consensus 66 ~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~~~~l~~----lp---~~~~~L~~L~l~~~~ 126 (219)
.+..+++|++|++++|.++ .++..+...++|+.|++++|..... ++ ...++|++|++++|.
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 5667788999999999887 2444566677999999998754321 11 224689999999975
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=2.2e-10 Score=90.52 Aligned_cols=125 Identities=27% Similarity=0.263 Sum_probs=90.8
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCC
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGH 81 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n 81 (219)
.|+++|+++|.|+.+..++.-+++++.|++++|.+...- .+..+++|+.||+++|... +-.+=..+-++++|.+++|
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 477888999988888888888888999999888654432 3677888999999988765 3333345667888888888
Q ss_pred cCCccchhhhCCCCCCEEeccCCCCCCcCCC-----CCCCCCeEeccCCcCCCcCC
Q 027793 82 NFESLPTGISQLQRLKCLHLINCNMIRSLPE-----LPFCLNYLNTSDCKRLQSLP 132 (219)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-----~~~~L~~L~l~~~~~l~~lp 132 (219)
.+.++. .++++-+|..||+++|+ ++.+.. .++.|+++.+.+|+ +..++
T Consensus 363 ~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 363 KIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred hHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 888775 67888888899998854 333321 24577788887765 44444
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.77 E-value=5e-10 Score=91.20 Aligned_cols=123 Identities=21% Similarity=0.241 Sum_probs=89.0
Q ss_pred CccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccc-cccc-cc-ccCCCCCCCCEEEe
Q 027793 3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQ-CRCL-IL-SGLSSLSSLKCLEL 78 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~-~p-~~~~~l~~L~~L~l 78 (219)
.-..+++..|.|+.+|+. |+.+++|+.||+++|.+....|++|..+++|..|.+.+ |.+. +| ..|+++.+++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 346789999999999886 89999999999999988888899999999998888887 6655 44 34667777777777
Q ss_pred cCCcCCc-cchhhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCc
Q 027793 79 SGHNFES-LPTGISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCK 126 (219)
Q Consensus 79 ~~n~l~~-lp~~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~ 126 (219)
.-|++.. ....+..+++|..|.+..| ..+.++.. ..+++.+++..++
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 7677663 3445667777777777663 34445431 2355555555444
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.71 E-value=8.1e-09 Score=86.97 Aligned_cols=103 Identities=36% Similarity=0.434 Sum_probs=76.8
Q ss_pred CCccEEEeecCCCcccCccccCCC-CCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIE-GLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~ 79 (219)
+.++.|++.+|.++++|+....+. +|+.|++++| ....+|..+..+++|+.|++++|.+. +|...+..++|+.|+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred cceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 357788888888888888766664 8888888887 44555556778888888888888876 55555577788888888
Q ss_pred CCcCCccchhhhCCCCCCEEeccCCC
Q 027793 80 GHNFESLPTGISQLQRLKCLHLINCN 105 (219)
Q Consensus 80 ~n~l~~lp~~l~~l~~L~~L~l~~~~ 105 (219)
+|.++.+|........|+++.+++|.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCc
Confidence 88888888665556667777777753
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=1.6e-08 Score=62.08 Aligned_cols=56 Identities=38% Similarity=0.537 Sum_probs=33.2
Q ss_pred CCcEEeccccccc-cc-ccCCCCCCCCEEEecCCcCCccch-hhhCCCCCCEEeccCCC
Q 027793 50 KLQKLCLSQCRCL-IL-SGLSSLSSLKCLELSGHNFESLPT-GISQLQRLKCLHLINCN 105 (219)
Q Consensus 50 ~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~ 105 (219)
+|++|++++|.+. +| ..+.++++|++|++++|.++.++. +|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555444 33 345666666666666666665543 55666677777766653
No 31
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.70 E-value=1.4e-07 Score=78.63 Aligned_cols=78 Identities=24% Similarity=0.498 Sum_probs=57.7
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEec
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~ 79 (219)
.+++.|++++|.++.+|. + -.+|+.|++++|.....+|..+ .++|++|++++|... +| .+|+.|++.
T Consensus 52 ~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~ 120 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLEIK 120 (426)
T ss_pred cCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEEeC
Confidence 578899999999999883 2 2469999999987777788655 368999999998432 44 357777787
Q ss_pred CCc---CCccchhh
Q 027793 80 GHN---FESLPTGI 90 (219)
Q Consensus 80 ~n~---l~~lp~~l 90 (219)
++. +..+|..+
T Consensus 121 ~n~~~~L~~LPssL 134 (426)
T PRK15386 121 GSATDSIKNVPNGL 134 (426)
T ss_pred CCCCcccccCcchH
Confidence 665 44666544
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.70 E-value=1.6e-09 Score=91.99 Aligned_cols=87 Identities=30% Similarity=0.399 Sum_probs=45.4
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCC
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGH 81 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n 81 (219)
.|+++|++.|.++.+|..+..|+ |+.|.+++| ..+.+|+.++....|..||.+.|.+. +|..++++.+|+.|.+..|
T Consensus 122 ~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 122 ALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred HHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh
Confidence 35555666666666665555444 555555554 44555666665556666666666554 4444444444444444444
Q ss_pred cCCccchhhh
Q 027793 82 NFESLPTGIS 91 (219)
Q Consensus 82 ~l~~lp~~l~ 91 (219)
++..+|..+.
T Consensus 200 ~l~~lp~El~ 209 (722)
T KOG0532|consen 200 HLEDLPEELC 209 (722)
T ss_pred hhhhCCHHHh
Confidence 4444444333
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.62 E-value=2.3e-08 Score=84.16 Aligned_cols=129 Identities=30% Similarity=0.359 Sum_probs=81.5
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCC
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGH 81 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n 81 (219)
+|+.|++++|.+..+|..+..+++|+.|++++| ....+|...+..+.|+.|++++|.+. +|..+.....|+++.+++|
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence 678888888888888766788888888888887 34555555557777888888887766 5554444455777777777
Q ss_pred cCCccchhhhCCCCCCEEeccCCCCCC--cCCCCCCCCCeEeccCCcCCCcCCc
Q 027793 82 NFESLPTGISQLQRLKCLHLINCNMIR--SLPELPFCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~--~lp~~~~~L~~L~l~~~~~l~~lp~ 133 (219)
++...+..+.++.++..+.+.+|.... .....+++++.|++++ +.+++++.
T Consensus 220 ~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~ 272 (394)
T COG4886 220 SIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN-NQISSISS 272 (394)
T ss_pred cceecchhhhhcccccccccCCceeeeccchhccccccceecccc-cccccccc
Confidence 655555556666666666655533222 1112234566666655 34555544
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=2.8e-08 Score=78.83 Aligned_cols=106 Identities=28% Similarity=0.317 Sum_probs=81.7
Q ss_pred CCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCCcCCccchhhhCCCCCCEEecc
Q 027793 23 HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLI 102 (219)
Q Consensus 23 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~ 102 (219)
.++.|+++|+++| .++.+.+++.-.|+++.|+++.|.+..-..+..+++|+.||+++|.++++..+-.++.+.++|.++
T Consensus 282 TWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 4567888999988 556666777778899999999998875566888889999999999988877666778888999998
Q ss_pred CCCCCCcCCCC--CCCCCeEeccCCcCCCcC
Q 027793 103 NCNMIRSLPEL--PFCLNYLNTSDCKRLQSL 131 (219)
Q Consensus 103 ~~~~l~~lp~~--~~~L~~L~l~~~~~l~~l 131 (219)
+| .++.+... +.+|..||+++| +++.+
T Consensus 361 ~N-~iE~LSGL~KLYSLvnLDl~~N-~Ie~l 389 (490)
T KOG1259|consen 361 QN-KIETLSGLRKLYSLVNLDLSSN-QIEEL 389 (490)
T ss_pred hh-hHhhhhhhHhhhhheecccccc-chhhH
Confidence 84 55665543 458888998885 44443
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.44 E-value=2e-07 Score=85.38 Aligned_cols=100 Identities=30% Similarity=0.365 Sum_probs=50.3
Q ss_pred ccEEEeecCC--CcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793 4 LQEIDLFLSG--IKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 4 L~~L~l~~~~--i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~ 79 (219)
|+.|-+.+|. +..++.. |..++.|++||+++|...+.+|..++.+-+|++|+++++.+. +|..++.+..|.+|++.
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccc
Confidence 4444444443 3333333 444555555555555555555555555555555555555544 55555555555555555
Q ss_pred CCcC-CccchhhhCCCCCCEEeccC
Q 027793 80 GHNF-ESLPTGISQLQRLKCLHLIN 103 (219)
Q Consensus 80 ~n~l-~~lp~~l~~l~~L~~L~l~~ 103 (219)
.+.- ..+|.....+.+|++|.+..
T Consensus 627 ~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 627 VTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccccccchhhhcccccEEEeec
Confidence 5442 23333334455555555543
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=4e-08 Score=81.16 Aligned_cols=102 Identities=21% Similarity=0.123 Sum_probs=50.9
Q ss_pred CccEEEeecCCCcccCc--cccCCCCCcEEeccCCCCCCC--CccccCCCCCCcEEecccccccccc---cCCCCCCCCE
Q 027793 3 LLQEIDLFLSGIKELPS--SIEHIEGLKCLRLNSCTKLGF--LPESLCNLKKLQKLCLSQCRCLILS---GLSSLSSLKC 75 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~p~---~~~~l~~L~~ 75 (219)
+|+.+.+.++.+...+. ....+++++.||+++|-+... +-.....+|+|+.|+++.|....|. .-..++.|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 45555555555544332 244566666666666522211 1122345666666666666554221 1123455566
Q ss_pred EEecCCcCC--ccchhhhCCCCCCEEeccCC
Q 027793 76 LELSGHNFE--SLPTGISQLQRLKCLHLINC 104 (219)
Q Consensus 76 L~l~~n~l~--~lp~~l~~l~~L~~L~l~~~ 104 (219)
|.++.|.++ ++-..+..+++|+.|++.+|
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 666666655 33333444555666666554
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.39 E-value=1.9e-07 Score=85.54 Aligned_cols=118 Identities=25% Similarity=0.339 Sum_probs=59.4
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEeccCCCC-CCCCcc-ccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecC
Q 027793 5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTK-LGFLPE-SLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 5 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~-~~~~p~-~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~ 80 (219)
+...+.+|.+..++... ..++|++|-+.+|.. ...++. .|..++.|++||+++|... +|..++.+-+|++|++++
T Consensus 526 rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 33444444444444432 223455555555531 222222 2445666666666655433 566666666666666666
Q ss_pred CcCCccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEecc
Q 027793 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTS 123 (219)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~ 123 (219)
+.++.+|..+++++.|.+|++..+..+..+|.. +.+|++|.+.
T Consensus 605 t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 605 TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 666666666666666666666555444444322 2445554443
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.5e-07 Score=77.87 Aligned_cols=123 Identities=26% Similarity=0.280 Sum_probs=75.2
Q ss_pred CCCccEEEeecCCCccc---CccccCCCCCcEEeccCCCCCCCCccc-cCCCCCCcEEeccccccc---ccccCCCCCCC
Q 027793 1 MELLQEIDLFLSGIKEL---PSSIEHIEGLKCLRLNSCTKLGFLPES-LCNLKKLQKLCLSQCRCL---ILSGLSSLSSL 73 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L 73 (219)
|++++.||++.|-+..+ -.....+++|+.|+++.|.+.-..... -..+++|+.|.++.|.+. +-..+..+|+|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 56788899998877663 233567889999999888654333222 125778888888888876 22234456677
Q ss_pred CEEEecCCc-CCccchhhhCCCCCCEEeccCCCCCCcCCC-----CCCCCCeEeccC
Q 027793 74 KCLELSGHN-FESLPTGISQLQRLKCLHLINCNMIRSLPE-----LPFCLNYLNTSD 124 (219)
Q Consensus 74 ~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-----~~~~L~~L~l~~ 124 (219)
+.|++.+|. +.........+..|+.|++++|+.+ .++. .++.|+.|.++.
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccc
Confidence 777777774 2222222344566777777765443 2332 135566666655
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.29 E-value=7.6e-07 Score=50.69 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=29.6
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCC
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKL 38 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~ 38 (219)
++|++|++++|+|+++|+.++++++|++|++++|.+.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 5788999999999998888889999999999988543
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=1.1e-08 Score=89.21 Aligned_cols=118 Identities=22% Similarity=0.210 Sum_probs=86.3
Q ss_pred ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccc-cCCCCCCCCEEEecCC
Q 027793 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILS-GLSSLSSLKCLELSGH 81 (219)
Q Consensus 4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~-~~~~l~~L~~L~l~~n 81 (219)
|...++++|.+..+..++.-++.++.|++++|.+...- .+..+++|++||+++|... +|. ...++. |+.|.+++|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 55677788888888877888889999999998665443 6778899999999998876 442 122333 888889988
Q ss_pred cCCccchhhhCCCCCCEEeccCCCCCCcCCCC-----CCCCCeEeccCCc
Q 027793 82 NFESLPTGISQLQRLKCLHLINCNMIRSLPEL-----PFCLNYLNTSDCK 126 (219)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~-----~~~L~~L~l~~~~ 126 (219)
.++++- .+.++++|+.||++.| .+....+. +..|+.|++.||+
T Consensus 243 ~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 243 ALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 888776 6778888999999884 44433332 2567777887765
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.19 E-value=2.6e-07 Score=78.46 Aligned_cols=101 Identities=29% Similarity=0.329 Sum_probs=64.2
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCC
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH 81 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n 81 (219)
++|+.|++.+|.|..+...+..+++|++|++++|.+...- .+..++.|+.|++++|.+.....+..+++|+.+++++|
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYN 172 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccCCccchhhhcccCCcc
Confidence 4566677777777666654566677777777776443322 34556667777777777664455556677777777777
Q ss_pred cCCccchh-hhCCCCCCEEeccCC
Q 027793 82 NFESLPTG-ISQLQRLKCLHLINC 104 (219)
Q Consensus 82 ~l~~lp~~-l~~l~~L~~L~l~~~ 104 (219)
.++.+... ...+.+++.+++.+|
T Consensus 173 ~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 173 RIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred hhhhhhhhhhhhccchHHHhccCC
Confidence 76655542 455666777777664
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.18 E-value=3.2e-06 Score=48.13 Aligned_cols=39 Identities=33% Similarity=0.520 Sum_probs=27.5
Q ss_pred CCCCEEEecCCcCCccchhhhCCCCCCEEeccCCCCCCcC
Q 027793 71 SSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSL 110 (219)
Q Consensus 71 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~l 110 (219)
++|++|++++|.|+.+|..++++++|+.|++++|+ ++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 46788888888888887778888888888888764 3443
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.14 E-value=1.1e-06 Score=78.73 Aligned_cols=123 Identities=22% Similarity=0.265 Sum_probs=79.1
Q ss_pred CCccEEEeecCC-Ccc-cCcccc-CCCCCcEEeccCCCCCC-CCccccCCCCCCcEEecccccccccccCCCCCCCCEEE
Q 027793 2 ELLQEIDLFLSG-IKE-LPSSIE-HIEGLKCLRLNSCTKLG-FLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLE 77 (219)
Q Consensus 2 ~~L~~L~l~~~~-i~~-lp~~~~-~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~ 77 (219)
.+|++|++++.. +.. .|..++ .+|+|+.|.+.+-.+.. .+..-..++|+|..||++++++.--.+++.+++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 367888888753 222 444443 46888888887643322 23334557888888888888776446777888888888
Q ss_pred ecCCcCCccc--hhhhCCCCCCEEeccCCCCCCc---------CCCCCCCCCeEeccC
Q 027793 78 LSGHNFESLP--TGISQLQRLKCLHLINCNMIRS---------LPELPFCLNYLNTSD 124 (219)
Q Consensus 78 l~~n~l~~lp--~~l~~l~~L~~L~l~~~~~l~~---------lp~~~~~L~~L~l~~ 124 (219)
+.+-.+.... ..+.++++|+.||+|.-..... -...++.|+.||.++
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 8776665433 2567788888888886332221 112356788888776
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.7e-07 Score=73.17 Aligned_cols=149 Identities=21% Similarity=0.237 Sum_probs=91.6
Q ss_pred CCccEEEeecCCCcc-cCccccCCCCCcEEeccCCCCCCCCc--cccCCCCCCcEEecccccccccc---cCCC-CCCCC
Q 027793 2 ELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLP--ESLCNLKKLQKLCLSQCRCLILS---GLSS-LSSLK 74 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~p~---~~~~-l~~L~ 74 (219)
.+|+.|.+.++.+.+ +-..+.+-.+|+.+++++|+-.+... -.+.+++.|+.|++++|...-+. .+.. -++|+
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT 289 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence 356666666666665 44446666777888887775444321 13456778888888888754111 1111 14677
Q ss_pred EEEecCCc--C--CccchhhhCCCCCCEEeccCCCCCCcCC----CCCCCCCeEeccCCcCCCcCCccccCCCCCccccC
Q 027793 75 CLELSGHN--F--ESLPTGISQLQRLKCLHLINCNMIRSLP----ELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTR 146 (219)
Q Consensus 75 ~L~l~~n~--l--~~lp~~l~~l~~L~~L~l~~~~~l~~lp----~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~ 146 (219)
.|+++|+. + ..+..-...+++|.+||++.|..++.-- ..++.|++|.++.|..+. |..+-.+
T Consensus 290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l-------- 359 (419)
T KOG2120|consen 290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLEL-------- 359 (419)
T ss_pred hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeeee--------
Confidence 88888875 2 2343344789999999999988766410 124789999999987543 2222111
Q ss_pred CCCCCCeEEEEcCC
Q 027793 147 GNSYLPVMFKFVNC 160 (219)
Q Consensus 147 ~~~~~l~~l~~~~c 160 (219)
+....+.++++.+|
T Consensus 360 ~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 360 NSKPSLVYLDVFGC 373 (419)
T ss_pred ccCcceEEEEeccc
Confidence 11125678998887
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=9e-07 Score=75.18 Aligned_cols=120 Identities=28% Similarity=0.332 Sum_probs=82.4
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCCc
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN 82 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n~ 82 (219)
.++.+++..|.++.+-..+..+.+|+.+++.+|.+.+ +...+..+++|++|++++|.+.--..+..++.|+.|++++|.
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNL 151 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccchhhccchhhheeccCc
Confidence 4556667777777744446778888888888875443 332366788888888888887744566677778888888888
Q ss_pred CCccchhhhCCCCCCEEeccCCCCCCcCCC----CCCCCCeEeccCC
Q 027793 83 FESLPTGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDC 125 (219)
Q Consensus 83 l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~----~~~~L~~L~l~~~ 125 (219)
|+.+. .+..+..|+.+++++|.. ..+.. ...+++.+++.++
T Consensus 152 i~~~~-~~~~l~~L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 152 ISDIS-GLESLKSLKLLDLSYNRI-VDIENDELSELISLEELDLGGN 196 (414)
T ss_pred chhcc-CCccchhhhcccCCcchh-hhhhhhhhhhccchHHHhccCC
Confidence 88776 455578888888888543 33332 2356666666654
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.12 E-value=4.1e-06 Score=62.92 Aligned_cols=78 Identities=24% Similarity=0.336 Sum_probs=36.5
Q ss_pred CCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccC-CCCCCCCEEEecCCcCCccch--hhhCCCCCCEEec
Q 027793 26 GLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGL-SSLSSLKCLELSGHNFESLPT--GISQLQRLKCLHL 101 (219)
Q Consensus 26 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~-~~l~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l 101 (219)
....+|+++|.+.. + +.+..++.|.+|.+.+|.+. +.+.+ .-+++|+.|.+.+|+|..+-+ .+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34455555553322 1 13445555556666555554 21122 233455556666655543321 2344555555555
Q ss_pred cCCC
Q 027793 102 INCN 105 (219)
Q Consensus 102 ~~~~ 105 (219)
-+|+
T Consensus 121 l~Np 124 (233)
T KOG1644|consen 121 LGNP 124 (233)
T ss_pred cCCc
Confidence 5543
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.01 E-value=4.6e-07 Score=64.04 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=78.5
Q ss_pred ccEEEeecCCCcccCcc---ccCCCCCcEEeccCCCCCCCCccccC-CCCCCcEEeccccccc-ccccCCCCCCCCEEEe
Q 027793 4 LQEIDLFLSGIKELPSS---IEHIEGLKCLRLNSCTKLGFLPESLC-NLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLEL 78 (219)
Q Consensus 4 L~~L~l~~~~i~~lp~~---~~~l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l 78 (219)
+-.++++.+.+-.+++. +.....|+..++++| ..+.+|+.+. .++....+++++|.+. +|..+..++.|+.+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34567777766655554 455566777889888 4455666554 4668889999998877 8888888999999999
Q ss_pred cCCcCCccchhhhCCCCCCEEeccCCCCCCcCC
Q 027793 79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLP 111 (219)
Q Consensus 79 ~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp 111 (219)
+.|++...|..+..+.+|..|+..+| ....+|
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid 139 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEID 139 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCC-ccccCc
Confidence 99999888888877888888887764 444554
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.00 E-value=2.3e-06 Score=69.09 Aligned_cols=178 Identities=17% Similarity=0.145 Sum_probs=102.6
Q ss_pred CCccEEEeecCCCcc--cCc---cccCCCCCcEEeccCCCCCCCCc-------------cccCCCCCCcEEeccccccc-
Q 027793 2 ELLQEIDLFLSGIKE--LPS---SIEHIEGLKCLRLNSCTKLGFLP-------------ESLCNLKKLQKLCLSQCRCL- 62 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~--lp~---~~~~l~~L~~L~l~~~~~~~~~p-------------~~~~~l~~L~~L~l~~~~~~- 62 (219)
++|++|++|+|.+.. ++. -+.++..|++|++.+|.+..... .-+..-++|+++...+|+..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 467888888876654 222 24567778888887774422211 12334567888888887765
Q ss_pred -----ccccCCCCCCCCEEEecCCcCC-----ccchhhhCCCCCCEEeccCCCCCC--------cCCCCCCCCCeEeccC
Q 027793 63 -----ILSGLSSLSSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINCNMIR--------SLPELPFCLNYLNTSD 124 (219)
Q Consensus 63 -----~p~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~~~~l~--------~lp~~~~~L~~L~l~~ 124 (219)
+...+...+.|+.+.+..|.|. .+-.++..++.|+.||+..|.+.. .+|. .++|+.+++.+
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s-~~~L~El~l~d 250 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS-WPHLRELNLGD 250 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc-cchheeecccc
Confidence 4445666788888888888764 234567888889999988865432 1222 24788888888
Q ss_pred CcCCCcCCcccc-CCCCCccccCCCCCCCeEEEEcCCcccccccc---cchhHhHHHHHhhhCCCccc
Q 027793 125 CKRLQSLPKISS-CLETPSNQTRGNSYLPVMFKFVNCVKLHKGTE---RNFFANFQRRVHNALPGILH 188 (219)
Q Consensus 125 ~~~l~~lp~~~~-~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~---~~~~~~~~~~~~~~lp~~~~ 188 (219)
|..-..-...+. .+ ......+..+.+.+| .++.... .......+.+....+.+++.
T Consensus 251 cll~~~Ga~a~~~al-------~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDAL-------KESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHH-------hccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 853222111111 00 001124446777666 3333221 12234456666666666664
No 49
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.98 E-value=2.6e-06 Score=69.97 Aligned_cols=85 Identities=21% Similarity=0.264 Sum_probs=68.7
Q ss_pred ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecCCcCCc-cchhhhCCCCCC
Q 027793 21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSGHNFES-LPTGISQLQRLK 97 (219)
Q Consensus 21 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~ 97 (219)
|..+++|+.|++++|.+...-+.+|....+++.|.+..|++. --..|.++..|+.|++.+|+|+. -|.+|..+.+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 788899999999988777777778888889999999888876 22456788888999999999884 466778888888
Q ss_pred EEeccCCC
Q 027793 98 CLHLINCN 105 (219)
Q Consensus 98 ~L~l~~~~ 105 (219)
+|++-.|.
T Consensus 350 ~l~l~~Np 357 (498)
T KOG4237|consen 350 TLNLLSNP 357 (498)
T ss_pred eeehccCc
Confidence 88887654
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.4e-07 Score=74.80 Aligned_cols=127 Identities=26% Similarity=0.207 Sum_probs=82.8
Q ss_pred ccEEEeecCCCcc--cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc----ccccCCCCCCCCEEE
Q 027793 4 LQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL----ILSGLSSLSSLKCLE 77 (219)
Q Consensus 4 L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~L~ 77 (219)
|+++|++...|+. +...+..+.+|+.|.+.++.....+-..+.+-.+|+.|+++.|... .---+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 6677787776664 4444667778888888887766666666777778888888887654 222356677888888
Q ss_pred ecCCcCC--ccchhhhCC-CCCCEEeccCCCCCC------cCCCCCCCCCeEeccCCcCCCc
Q 027793 78 LSGHNFE--SLPTGISQL-QRLKCLHLINCNMIR------SLPELPFCLNYLNTSDCKRLQS 130 (219)
Q Consensus 78 l~~n~l~--~lp~~l~~l-~~L~~L~l~~~~~l~------~lp~~~~~L~~L~l~~~~~l~~ 130 (219)
++.|.+. .+...+.+. .+|+.|+++|+..-- .+....+.|.+||+++|..++.
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence 8888754 333333332 467778888764311 1112246788888888877664
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=1e-06 Score=62.29 Aligned_cols=105 Identities=19% Similarity=0.339 Sum_probs=67.5
Q ss_pred CCcEEeccCCCCCCCCcc---ccCCCCCCcEEeccccccc-ccccCCC-CCCCCEEEecCCcCCccchhhhCCCCCCEEe
Q 027793 26 GLKCLRLNSCTKLGFLPE---SLCNLKKLQKLCLSQCRCL-ILSGLSS-LSSLKCLELSGHNFESLPTGISQLQRLKCLH 100 (219)
Q Consensus 26 ~L~~L~l~~~~~~~~~p~---~~~~l~~L~~L~l~~~~~~-~p~~~~~-l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~ 100 (219)
.+..++++.|. +..+++ .+.....|...++++|.+. +|+.+.. .+.++.+++++|.++.+|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred Hhhhcccccch-hhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 45667777773 344444 3445566777788888766 6665543 3478888888888888888888888888888
Q ss_pred ccCCCCCCcCCCCC---CCCCeEeccCCcCCCcCCc
Q 027793 101 LINCNMIRSLPELP---FCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 101 l~~~~~l~~lp~~~---~~L~~L~l~~~~~l~~lp~ 133 (219)
++.|. +...|..+ .++..|+..+ +....+|-
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~Lds~~-na~~eid~ 140 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDMLDSPE-NARAEIDV 140 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHhcCCC-CccccCcH
Confidence 88754 44455433 2444444444 34455553
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.87 E-value=3.7e-07 Score=80.07 Aligned_cols=101 Identities=25% Similarity=0.281 Sum_probs=79.7
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccc-cCCCCCCcEEecccccccccccCCCCCCCCEEEecC
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPES-LCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~ 80 (219)
+.++.|+++.|+++++. .+..+++|++||++.|. ...+|.- ...+ +|+.|.+++|...--.++.++.+|+.||+++
T Consensus 187 ~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l~tL~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNALTTLRGIENLKSLYGLDLSY 263 (1096)
T ss_pred HHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccHHHhhhhHHhhhhhhccchhH
Confidence 56889999999999877 47889999999999984 4555542 2233 4999999999877556778899999999999
Q ss_pred CcCCccc--hhhhCCCCCCEEeccCCC
Q 027793 81 HNFESLP--TGISQLQRLKCLHLINCN 105 (219)
Q Consensus 81 n~l~~lp--~~l~~l~~L~~L~l~~~~ 105 (219)
|-+.... ..++.+..|+.|++.||+
T Consensus 264 Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 264 NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9876433 245677889999999975
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.80 E-value=5.9e-06 Score=66.74 Aligned_cols=103 Identities=19% Similarity=0.151 Sum_probs=50.8
Q ss_pred CccEEEeecCCCcccCc-----cccCCCCCcEEeccCCCCCCC----CccccCCCCCCcEEeccccccc------ccccC
Q 027793 3 LLQEIDLFLSGIKELPS-----SIEHIEGLKCLRLNSCTKLGF----LPESLCNLKKLQKLCLSQCRCL------ILSGL 67 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~-----~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~------~p~~~ 67 (219)
+|+++....|++.+-+. .|...+.|+.+.++.|.+... +...+..+++|++||+.+|.+. +...+
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 45555555555554222 244445566666555543211 1223445566666666666544 33344
Q ss_pred CCCCCCCEEEecCCcCC-----ccchhh-hCCCCCCEEeccCCC
Q 027793 68 SSLSSLKCLELSGHNFE-----SLPTGI-SQLQRLKCLHLINCN 105 (219)
Q Consensus 68 ~~l~~L~~L~l~~n~l~-----~lp~~l-~~l~~L~~L~l~~~~ 105 (219)
..+++|+.+++++|.++ .+-..+ ...++|+.+.+.+|.
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 45555666666666554 122222 224556666666554
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=3.6e-05 Score=64.51 Aligned_cols=84 Identities=20% Similarity=0.384 Sum_probs=48.2
Q ss_pred CCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCc-CCccchhhhCCCCCCEEeccCCCCCCcCCCCCCCCCeEeccC
Q 027793 47 NLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHN-FESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSD 124 (219)
Q Consensus 47 ~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~ 124 (219)
.+.++..|++++|.+. +|. -..+|+.|.+++|. ++.+|..+. ++|+.|++++|..+..+|. +|+.|++++
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~---sLe~L~L~~ 121 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE---SVRSLEIKG 121 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc---ccceEEeCC
Confidence 3567777777777544 441 12357777777654 566665442 4677777777655555543 455555543
Q ss_pred --CcCCCcCCccccCC
Q 027793 125 --CKRLQSLPKISSCL 138 (219)
Q Consensus 125 --~~~l~~lp~~~~~~ 138 (219)
|..+..+|..+..+
T Consensus 122 n~~~~L~~LPssLk~L 137 (426)
T PRK15386 122 SATDSIKNVPNGLTSL 137 (426)
T ss_pred CCCcccccCcchHhhe
Confidence 23355566554433
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.56 E-value=3.9e-05 Score=59.79 Aligned_cols=100 Identities=29% Similarity=0.370 Sum_probs=63.1
Q ss_pred cCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc----ccccCCCCCCCCEEEecCCcCCc---cchhhhCCC
Q 027793 22 EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL----ILSGLSSLSSLKCLELSGHNFES---LPTGISQLQ 94 (219)
Q Consensus 22 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~L~l~~n~l~~---lp~~l~~l~ 94 (219)
..+..|+.+.+.++..++.. .+-.+++|+.|.++.|... ++.-...+++|+++++++|+++. ++ .+..+.
T Consensus 40 d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhc
Confidence 34456666666665443321 3457888899999888433 33334455889999999988763 33 456677
Q ss_pred CCCEEeccCCCCCCcCC-------CCCCCCCeEeccCC
Q 027793 95 RLKCLHLINCNMIRSLP-------ELPFCLNYLNTSDC 125 (219)
Q Consensus 95 ~L~~L~l~~~~~l~~lp-------~~~~~L~~L~l~~~ 125 (219)
+|..|++.+|.-.. +- ..+++|+.|+-.+.
T Consensus 117 nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred chhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 78888888775443 22 12467777775554
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=7.3e-05 Score=67.20 Aligned_cols=106 Identities=17% Similarity=0.183 Sum_probs=76.7
Q ss_pred CCCccEEEeecCCCcc--cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc---ccccCCCCCCCCE
Q 027793 1 MELLQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLSSLKC 75 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L~~ 75 (219)
||.|+.|.+++-.+.. +..-..++++|..||++++.+ +.+ .+++++++|++|.+.+-.+. .-..+..+++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 5889999999865543 344456789999999999744 444 57889999999988876544 2235678999999
Q ss_pred EEecCCcCCccc-------hhhhCCCCCCEEeccCCCCCC
Q 027793 76 LELSGHNFESLP-------TGISQLQRLKCLHLINCNMIR 108 (219)
Q Consensus 76 L~l~~n~l~~lp-------~~l~~l~~L~~L~l~~~~~l~ 108 (219)
||+|.......+ +.-..+++|+.||.|+.....
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 999987644222 223458899999999865433
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=0.00025 Score=53.49 Aligned_cols=76 Identities=25% Similarity=0.310 Sum_probs=48.0
Q ss_pred CCCcEEecccccccccccCCCCCCCCEEEecCCcCCccchhhhC-CCCCCEEeccCCCCCCcCCCC-----CCCCCeEec
Q 027793 49 KKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQ-LQRLKCLHLINCNMIRSLPEL-----PFCLNYLNT 122 (219)
Q Consensus 49 ~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~-l~~L~~L~l~~~~~l~~lp~~-----~~~L~~L~l 122 (219)
.+...+|+++|.+..-..+..++.|.+|.+.+|+|+.+...+.. +++|+.|.+.+|+ +..+.+. ++.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeee
Confidence 45667777777766445566777777777777777766555543 4567777777643 3333321 356777776
Q ss_pred cCC
Q 027793 123 SDC 125 (219)
Q Consensus 123 ~~~ 125 (219)
-+|
T Consensus 121 l~N 123 (233)
T KOG1644|consen 121 LGN 123 (233)
T ss_pred cCC
Confidence 664
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=4.2e-05 Score=60.41 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=56.1
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc---ccccCCCCCCCCEEEec
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L~~L~l~ 79 (219)
+.+.|+..++.+.++.- ..+++.|++|.++-|.+.+.- .+..+++|+.|++..|.+. --..+.++++|+.|.|.
T Consensus 20 ~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCccHHHH-HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 45566667777666543 456777777777777544433 2556777777777777655 12345666777777777
Q ss_pred CCcCC--ccc----hhhhCCCCCCEEe
Q 027793 80 GHNFE--SLP----TGISQLQRLKCLH 100 (219)
Q Consensus 80 ~n~l~--~lp----~~l~~l~~L~~L~ 100 (219)
.|... .-+ ..+.-+++|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 76632 211 1234455666554
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=4.8e-05 Score=60.11 Aligned_cols=97 Identities=24% Similarity=0.173 Sum_probs=75.9
Q ss_pred CCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCCcCCccch--hhhCCCCCCEEe
Q 027793 23 HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPT--GISQLQRLKCLH 100 (219)
Q Consensus 23 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~ 100 (219)
.+.+.+.|+..||.+.. +. ...+|+.|++|.++-|.+.--..+..|++|+.|.|..|.|.++.+ -+.++++|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~D-Is-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD-IS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccH-HH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 35677888888885433 32 355899999999999998755667889999999999999987764 468999999999
Q ss_pred ccCCCCCCcCCCC--------CCCCCeEe
Q 027793 101 LINCNMIRSLPEL--------PFCLNYLN 121 (219)
Q Consensus 101 l~~~~~l~~lp~~--------~~~L~~L~ 121 (219)
+..|.-.+.-+.. +++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 9998776655532 46777776
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.84 E-value=0.00035 Score=33.31 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=13.3
Q ss_pred CccEEEeecCCCcccCccccC
Q 027793 3 LLQEIDLFLSGIKELPSSIEH 23 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~ 23 (219)
+|++|++++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777776666665443
No 61
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.81 E-value=0.00052 Score=32.67 Aligned_cols=21 Identities=43% Similarity=0.800 Sum_probs=14.3
Q ss_pred CCCEEEecCCcCCccchhhhC
Q 027793 72 SLKCLELSGHNFESLPTGISQ 92 (219)
Q Consensus 72 ~L~~L~l~~n~l~~lp~~l~~ 92 (219)
+|++|++++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766543
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.00041 Score=55.47 Aligned_cols=80 Identities=23% Similarity=0.225 Sum_probs=44.2
Q ss_pred CccEEEeecCCCcccCc---cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc---ccccCCCCCCCCEE
Q 027793 3 LLQEIDLFLSGIKELPS---SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLSSLKCL 76 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~---~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L~~L 76 (219)
.++.+|+.+|.|+++.+ .+.+++.|++|+++.|.....+...-....+|++|.+.+.... ....+..+|.++.|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 45667777777766443 2456777777777776543322111023456666666665543 22234455556666
Q ss_pred EecCCc
Q 027793 77 ELSGHN 82 (219)
Q Consensus 77 ~l~~n~ 82 (219)
+++.|+
T Consensus 152 HmS~N~ 157 (418)
T KOG2982|consen 152 HMSDNS 157 (418)
T ss_pred hhccch
Confidence 666553
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.72 E-value=0.00098 Score=52.12 Aligned_cols=99 Identities=26% Similarity=0.241 Sum_probs=51.4
Q ss_pred ccEEEeecCCCcccCccccCCCCCcEEeccCC--CCCCCCccccCCCCCCcEEeccccccccccc---CCCCCCCCEEEe
Q 027793 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQCRCLILSG---LSSLSSLKCLEL 78 (219)
Q Consensus 4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~--~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~---~~~l~~L~~L~l 78 (219)
|+.+++.+..++.+-. +..+++|+.|.++.| +..+.++--...+++|+++++++|++.++.. +..+.+|..|++
T Consensus 45 le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 45 LELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred hhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 3344444444333222 344666677777666 4444444444455677777777776653332 334455666666
Q ss_pred cCCcCCccc----hhhhCCCCCCEEeccC
Q 027793 79 SGHNFESLP----TGISQLQRLKCLHLIN 103 (219)
Q Consensus 79 ~~n~l~~lp----~~l~~l~~L~~L~l~~ 103 (219)
.+|..+.+- ..+.-+++|++|+-..
T Consensus 124 ~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 124 FNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred ccCCccccccHHHHHHHHhhhhccccccc
Confidence 666654332 1234456666665443
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.56 E-value=8.7e-05 Score=61.55 Aligned_cols=184 Identities=18% Similarity=0.127 Sum_probs=103.7
Q ss_pred CCCcEEeccCCCCCCCC--ccccCCCCCCcEEeccccccc----ccccCCCCCCCCEEEecCCc-CC--ccchhhhCCCC
Q 027793 25 EGLKCLRLNSCTKLGFL--PESLCNLKKLQKLCLSQCRCL----ILSGLSSLSSLKCLELSGHN-FE--SLPTGISQLQR 95 (219)
Q Consensus 25 ~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~L~l~~n~-l~--~lp~~l~~l~~ 95 (219)
..|+.|.++||.-.+.- -.....++++++|.+.+|... .-..-..+++|+++++..|. ++ .+......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 35778888887654432 223446788888888888754 12223457788888888865 55 22223456788
Q ss_pred CCEEeccCCCCCCc-----CCCCCCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEcCCcccccccccc
Q 027793 96 LKCLHLINCNMIRS-----LPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERN 170 (219)
Q Consensus 96 L~~L~l~~~~~l~~-----lp~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~ 170 (219)
|++++++.|..+.. +-.....++.+...||..++.-. +... ..-+..+..+++..|..+++.....
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~--l~~~-------~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA--LLKA-------AAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH--HHHH-------hccChHhhccchhhhccccchHHHH
Confidence 88888888876554 11122345555555655433211 0000 1112234466677887777765333
Q ss_pred hh---HhHHHHHhhhCCCcccccccceeccCeeeeeeEEeeceeecCCCC
Q 027793 171 FF---ANFQRRVHNALPGILHRKVDRKLIDGVESAFVYVEVGFHTAGSGL 217 (219)
Q Consensus 171 ~~---~~~~~~~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (219)
+- ..+|.+....+-...+..+.+.......+++.++..|.+=..+|+
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f 338 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF 338 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh
Confidence 33 334445444455545555555555567777777777765544443
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.38 E-value=0.0051 Score=48.85 Aligned_cols=41 Identities=17% Similarity=0.059 Sum_probs=24.7
Q ss_pred cCCCCCcEEeccCCCCCCCCcc----ccCCCCCCcEEeccccccc
Q 027793 22 EHIEGLKCLRLNSCTKLGFLPE----SLCNLKKLQKLCLSQCRCL 62 (219)
Q Consensus 22 ~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~l~~~~~~ 62 (219)
-++++|+..++++|.+....|+ .+++-+.|.+|.+++|..-
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 4566777777777655544443 3445566777777766543
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.0046 Score=49.70 Aligned_cols=131 Identities=18% Similarity=0.126 Sum_probs=76.2
Q ss_pred CCCccEEEeecCCCcccCccc-cCCCCCcEEeccCCCCCC-CCccccCCCCCCcEEeccccccc---cc----c------
Q 027793 1 MELLQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLG-FLPESLCNLKKLQKLCLSQCRCL---IL----S------ 65 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~---~p----~------ 65 (219)
|+.|++|+++.|.+...-... ..+.+|++|-+.+....- .....+..+|.++.|.++.|... +. +
T Consensus 96 lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v 175 (418)
T KOG2982|consen 96 LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEV 175 (418)
T ss_pred CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhh
Confidence 678999999999876522222 356789999998765432 23334567888888888888543 00 0
Q ss_pred ------------------cCCCCCCCCEEEecCCcCCccc--hhhhCCCCCCEEeccCCCCCCcCCC-----CCCCCCeE
Q 027793 66 ------------------GLSSLSSLKCLELSGHNFESLP--TGISQLQRLKCLHLINCNMIRSLPE-----LPFCLNYL 120 (219)
Q Consensus 66 ------------------~~~~l~~L~~L~l~~n~l~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~-----~~~~L~~L 120 (219)
--.-++++..+.+..|++.+.. ......+.+-.|+++.+ .+.+... .++.|..|
T Consensus 176 ~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dl 254 (418)
T KOG2982|consen 176 LTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDL 254 (418)
T ss_pred hhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhhee
Confidence 0011355555556666554332 23334555556666653 2333321 24677777
Q ss_pred eccCCcCCCcCC
Q 027793 121 NTSDCKRLQSLP 132 (219)
Q Consensus 121 ~l~~~~~l~~lp 132 (219)
.+..++....+.
T Consensus 255 Rv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 255 RVSENPLSDPLR 266 (418)
T ss_pred eccCCccccccc
Confidence 777766555443
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.16 E-value=0.0041 Score=27.54 Aligned_cols=16 Identities=44% Similarity=0.783 Sum_probs=7.2
Q ss_pred CCCEEEecCCcCCccc
Q 027793 72 SLKCLELSGHNFESLP 87 (219)
Q Consensus 72 ~L~~L~l~~n~l~~lp 87 (219)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666665554
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.12 E-value=0.0012 Score=56.77 Aligned_cols=105 Identities=32% Similarity=0.395 Sum_probs=50.7
Q ss_pred CCCCcEEeccCCCCCCC--CccccCCCCCCcEEecccc-ccc------ccccCCCCCCCCEEEecCCc-CCc--cchhhh
Q 027793 24 IEGLKCLRLNSCTKLGF--LPESLCNLKKLQKLCLSQC-RCL------ILSGLSSLSSLKCLELSGHN-FES--LPTGIS 91 (219)
Q Consensus 24 l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~-~~~------~p~~~~~l~~L~~L~l~~n~-l~~--lp~~l~ 91 (219)
.+.|+.+.+.+|..... +-.....++.|+.|+++++ ... .......+.+|+.++++++. ++. +.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566666666544443 2233445666666666652 111 11223344566666666665 441 221122
Q ss_pred CCCCCCEEeccCCCCCCc-----CCCCCCCCCeEeccCCcCC
Q 027793 92 QLQRLKCLHLINCNMIRS-----LPELPFCLNYLNTSDCKRL 128 (219)
Q Consensus 92 ~l~~L~~L~l~~~~~l~~-----lp~~~~~L~~L~l~~~~~l 128 (219)
.+++|+.|.+.+|..++. +....+.|++|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 356666666555543221 1122345666666666554
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.93 E-value=0.0045 Score=27.41 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=7.9
Q ss_pred CCccEEEeecCCCcccC
Q 027793 2 ELLQEIDLFLSGIKELP 18 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp 18 (219)
++|+.|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35666666666665554
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.18 E-value=0.11 Score=36.21 Aligned_cols=81 Identities=15% Similarity=0.207 Sum_probs=31.6
Q ss_pred ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccccc-ccCCCCCCCCEEEecCCcCCccch-hhhCCCCCCE
Q 027793 21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL-SGLSSLSSLKCLELSGHNFESLPT-GISQLQRLKC 98 (219)
Q Consensus 21 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~ 98 (219)
|...++|+.+.+... ....-...+..+++|+.+.+..+-..++ ..+.++++++.+.+.+ .+..++. .+..+++++.
T Consensus 8 F~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 8 FYNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TTT-TT--EEEETST---EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred HhCCCCCCEEEECCC-eeEeChhhcccccccccccccccccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 444555555555431 2222222444555566665555321122 2344555566666644 3333322 3444566666
Q ss_pred EeccC
Q 027793 99 LHLIN 103 (219)
Q Consensus 99 L~l~~ 103 (219)
+++..
T Consensus 86 i~~~~ 90 (129)
T PF13306_consen 86 IDIPS 90 (129)
T ss_dssp EEETT
T ss_pred cccCc
Confidence 66643
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.09 E-value=0.0066 Score=50.74 Aligned_cols=107 Identities=23% Similarity=0.272 Sum_probs=62.0
Q ss_pred CCCCcEEeccCCCCCCCCcc-cc-CCCCCCcEEeccccccc----ccccCCCCCCCCEEEecCCcCC---ccchhhhCCC
Q 027793 24 IEGLKCLRLNSCTKLGFLPE-SL-CNLKKLQKLCLSQCRCL----ILSGLSSLSSLKCLELSGHNFE---SLPTGISQLQ 94 (219)
Q Consensus 24 l~~L~~L~l~~~~~~~~~p~-~~-~~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~L~l~~n~l~---~lp~~l~~l~ 94 (219)
+..|++++.++|...+..+- .+ .+..+|+.+.++.|+.. +..--.+++.|+.+++.++... ++-..-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 45667777776655443221 12 24567777777777633 1112235667777777777632 2433345677
Q ss_pred CCCEEeccCCCCCCcC-----C---CCCCCCCeEeccCCcCCCc
Q 027793 95 RLKCLHLINCNMIRSL-----P---ELPFCLNYLNTSDCKRLQS 130 (219)
Q Consensus 95 ~L~~L~l~~~~~l~~l-----p---~~~~~L~~L~l~~~~~l~~ 130 (219)
.|+.+.+++|..++.- . .....|+.+.+++|+.+++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 7888888877655433 1 1234667777777776654
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.63 E-value=0.024 Score=27.87 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=15.5
Q ss_pred CCCccEEEeecCCCcccCcc
Q 027793 1 MELLQEIDLFLSGIKELPSS 20 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~ 20 (219)
|++|++|++++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 56788888888888887765
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.63 E-value=0.024 Score=27.87 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=15.5
Q ss_pred CCCccEEEeecCCCcccCcc
Q 027793 1 MELLQEIDLFLSGIKELPSS 20 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~ 20 (219)
|++|++|++++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 56788888888888887765
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.56 E-value=0.016 Score=49.80 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=16.7
Q ss_pred CCCCCEEEecCCc-CC--ccchhhhCCCCCCEEeccCCCC
Q 027793 70 LSSLKCLELSGHN-FE--SLPTGISQLQRLKCLHLINCNM 106 (219)
Q Consensus 70 l~~L~~L~l~~n~-l~--~lp~~l~~l~~L~~L~l~~~~~ 106 (219)
+++|+.|.+.+|. ++ .+-.....++.|++|++++|..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4455555544444 33 2222334444555555554443
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.50 E-value=0.041 Score=27.01 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=15.7
Q ss_pred CCCCCEEEecCCcCCccchhh
Q 027793 70 LSSLKCLELSGHNFESLPTGI 90 (219)
Q Consensus 70 l~~L~~L~l~~n~l~~lp~~l 90 (219)
+++|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457788888888888887654
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.50 E-value=0.041 Score=27.01 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=15.7
Q ss_pred CCCCCEEEecCCcCCccchhh
Q 027793 70 LSSLKCLELSGHNFESLPTGI 90 (219)
Q Consensus 70 l~~L~~L~l~~n~l~~lp~~l 90 (219)
+++|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457788888888888887654
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.14 E-value=0.011 Score=44.74 Aligned_cols=77 Identities=23% Similarity=0.322 Sum_probs=34.5
Q ss_pred CcEEeccCCCCCCCCccccCCCCCCcEEeccccccccc---ccC-CCCCCCCEEEecCCc-CC-ccchhhhCCCCCCEEe
Q 027793 27 LKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL---SGL-SSLSSLKCLELSGHN-FE-SLPTGISQLQRLKCLH 100 (219)
Q Consensus 27 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p---~~~-~~l~~L~~L~l~~n~-l~-~lp~~l~~l~~L~~L~ 100 (219)
++.++-+++.+...--+.+..+++++.|.+.+|..... +.+ +-.++|+.|++++|. |+ .--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 44555554433333223344555555555555543300 001 123455555555554 44 2223445555555555
Q ss_pred ccC
Q 027793 101 LIN 103 (219)
Q Consensus 101 l~~ 103 (219)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 543
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.94 E-value=0.21 Score=40.03 Aligned_cols=82 Identities=26% Similarity=0.269 Sum_probs=47.1
Q ss_pred CCccEEEeecCCCcc-----cCccccCCCCCcEEeccCCCCCCC----Cc-------cccCCCCCCcEEeccccccc--c
Q 027793 2 ELLQEIDLFLSGIKE-----LPSSIEHIEGLKCLRLNSCTKLGF----LP-------ESLCNLKKLQKLCLSQCRCL--I 63 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~----~p-------~~~~~l~~L~~L~l~~~~~~--~ 63 (219)
..++.+++++|.|.. +...+.+-.+|+..++++- +.+. ++ +.+-+||+|+..++|+|.+. .
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 456677777776654 2223445566666666652 3332 12 24456777777777777654 2
Q ss_pred c----ccCCCCCCCCEEEecCCcCC
Q 027793 64 L----SGLSSLSSLKCLELSGHNFE 84 (219)
Q Consensus 64 p----~~~~~l~~L~~L~l~~n~l~ 84 (219)
| +.++.-+.|.+|.+++|.+.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC
Confidence 2 23455566777777777654
No 79
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.93 E-value=0.21 Score=34.70 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=57.3
Q ss_pred CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccccc-ccCCCCCCCCEEEec
Q 027793 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL-SGLSSLSSLKCLELS 79 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p-~~~~~l~~L~~L~l~ 79 (219)
++|+.+.+.. .++.++.. |..+++|+.+.+.++ ....-...+..+++++.+.+..+...++ ..+..+++++.+++.
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEET
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccccccccccccccccccccccccC
Confidence 4688888874 57777665 788889999999874 4443344677888999999976433333 456779999999997
Q ss_pred CCcCCccch-hhhCCCCCCEEeccC
Q 027793 80 GHNFESLPT-GISQLQRLKCLHLIN 103 (219)
Q Consensus 80 ~n~l~~lp~-~l~~l~~L~~L~l~~ 103 (219)
.+ +..++. .+.++ .++.+.+..
T Consensus 90 ~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 90 SN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT--BEEHTTTTTT--T--EEE-TT
T ss_pred cc-ccEEchhhhcCC-CceEEEECC
Confidence 65 665544 45666 888888764
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.09 E-value=0.0029 Score=49.04 Aligned_cols=84 Identities=17% Similarity=0.101 Sum_probs=54.4
Q ss_pred ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCcCCccchhhhCCCCCCEE
Q 027793 21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCL 99 (219)
Q Consensus 21 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L 99 (219)
+......+.||++.|+ ...+...++.++.+..|+++.|.+. +|..++....+..+++..|..+..|-+++..+.++++
T Consensus 38 i~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 4555666677777663 2333345555666777777766655 6666666666677777777777777777777777777
Q ss_pred eccCCC
Q 027793 100 HLINCN 105 (219)
Q Consensus 100 ~l~~~~ 105 (219)
+.-++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 766654
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.75 E-value=0.097 Score=39.80 Aligned_cols=61 Identities=23% Similarity=0.353 Sum_probs=40.7
Q ss_pred CCCEEEecCCcCC-ccchhhhCCCCCCEEeccCCCCCC-----cCCCCCCCCCeEeccCCcCCCcCC
Q 027793 72 SLKCLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIR-----SLPELPFCLNYLNTSDCKRLQSLP 132 (219)
Q Consensus 72 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~-----~lp~~~~~L~~L~l~~~~~l~~lp 132 (219)
.++.+|.+++.|. .--.-+.++++++.|.+.+|.... .+....++|+.|++++|+.+++-.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G 168 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG 168 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH
Confidence 4667777777765 333456777788888888776554 233345778888888887777643
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.38 E-value=0.004 Score=48.30 Aligned_cols=57 Identities=25% Similarity=0.253 Sum_probs=26.7
Q ss_pred CCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCcCCccchhhhCCCCCCEEeccC
Q 027793 47 NLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLIN 103 (219)
Q Consensus 47 ~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~ 103 (219)
.+.....||++.|+.. +-..++-++.+..|+++.|.+..+|..++....++.++...
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~ 97 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK 97 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc
Confidence 3444445555554433 22233334444555555555555555555544454444443
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=89.22 E-value=0.29 Score=24.16 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=11.8
Q ss_pred CCCccEEEeecCCCccc
Q 027793 1 MELLQEIDLFLSGIKEL 17 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~l 17 (219)
+++|++|++++|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 45777777777777554
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=89.08 E-value=0.25 Score=24.39 Aligned_cols=18 Identities=44% Similarity=0.623 Sum_probs=12.5
Q ss_pred CCCCEEEecCCcCCccch
Q 027793 71 SSLKCLELSGHNFESLPT 88 (219)
Q Consensus 71 ~~L~~L~l~~n~l~~lp~ 88 (219)
.+|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777774
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.92 E-value=0.33 Score=23.13 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=6.7
Q ss_pred CCCCEEEecCCcCC
Q 027793 71 SSLKCLELSGHNFE 84 (219)
Q Consensus 71 ~~L~~L~l~~n~l~ 84 (219)
++|++|++++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45556666665554
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.27 E-value=1.3 Score=21.53 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=5.1
Q ss_pred CCeEeccCCcCC
Q 027793 117 LNYLNTSDCKRL 128 (219)
Q Consensus 117 L~~L~l~~~~~l 128 (219)
|++|++++|..+
T Consensus 4 L~~L~l~~C~~i 15 (26)
T smart00367 4 LRELDLSGCTNI 15 (26)
T ss_pred CCEeCCCCCCCc
Confidence 444444444433
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.19 E-value=1.8 Score=21.52 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=7.7
Q ss_pred CCccEEEeecCCCc
Q 027793 2 ELLQEIDLFLSGIK 15 (219)
Q Consensus 2 ~~L~~L~l~~~~i~ 15 (219)
++|++|++++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34555666655554
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=73.09 E-value=0.12 Score=44.84 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=5.9
Q ss_pred CCCCCcEEeccCC
Q 027793 23 HIEGLKCLRLNSC 35 (219)
Q Consensus 23 ~l~~L~~L~l~~~ 35 (219)
....|..|++++|
T Consensus 113 t~~~L~~L~l~~n 125 (478)
T KOG4308|consen 113 TLPTLGQLDLSGN 125 (478)
T ss_pred ccccHhHhhcccC
Confidence 3344444444444
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=63.17 E-value=0.23 Score=43.22 Aligned_cols=13 Identities=46% Similarity=0.754 Sum_probs=6.1
Q ss_pred CCCCcEEeccccc
Q 027793 48 LKKLQKLCLSQCR 60 (219)
Q Consensus 48 l~~L~~L~l~~~~ 60 (219)
..++++|.+.+|.
T Consensus 203 ~~~le~L~L~~~~ 215 (478)
T KOG4308|consen 203 LSSLETLKLSRCG 215 (478)
T ss_pred cccHHHHhhhhcC
Confidence 3344455554444
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.94 E-value=3 Score=36.61 Aligned_cols=59 Identities=24% Similarity=0.150 Sum_probs=26.1
Q ss_pred CCCCcEEeccCCCCCC--CCccccCCCCCCcEEeccccccc--ccc---cCCCCCCCCEEEecCCcC
Q 027793 24 IEGLKCLRLNSCTKLG--FLPESLCNLKKLQKLCLSQCRCL--ILS---GLSSLSSLKCLELSGHNF 83 (219)
Q Consensus 24 l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~--~p~---~~~~l~~L~~L~l~~n~l 83 (219)
.+.+..+++++|++.. .+..-....|+|..|+|++|... .-. .+++ ..|++|-+.||++
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPl 282 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPL 282 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcc
Confidence 3445555555553311 12222223456666666666211 111 1122 2356666666664
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.37 E-value=5.3 Score=35.18 Aligned_cols=74 Identities=26% Similarity=0.232 Sum_probs=44.2
Q ss_pred CCCCCcEEeccccccc----ccccCCCCCCCCEEEecCC--cCCccchhhhCC--CCCCEEeccCCCCCCcCCC------
Q 027793 47 NLKKLQKLCLSQCRCL----ILSGLSSLSSLKCLELSGH--NFESLPTGISQL--QRLKCLHLINCNMIRSLPE------ 112 (219)
Q Consensus 47 ~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~L~l~~n--~l~~lp~~l~~l--~~L~~L~l~~~~~l~~lp~------ 112 (219)
+.+.+..+.+++|++. +..-....++|+.|+|++| .+...+ .+.+. ..|++|-+.||+..+.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 4567777788888765 2222234577888888888 343322 23332 3467788888776654432
Q ss_pred ----CCCCCCeEe
Q 027793 113 ----LPFCLNYLN 121 (219)
Q Consensus 113 ----~~~~L~~L~ 121 (219)
.+|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 246666665
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=32.06 E-value=28 Score=36.86 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=25.4
Q ss_pred EeecCCCcccCcc-ccCCCCCcEEeccCCCC
Q 027793 8 DLFLSGIKELPSS-IEHIEGLKCLRLNSCTK 37 (219)
Q Consensus 8 ~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~ 37 (219)
||++|+|+.+|.. |..+.+|+.|+|++|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 5788999998886 78889999999998855
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.66 E-value=54 Score=34.98 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=22.7
Q ss_pred eccccccc-cc-ccCCCCCCCCEEEecCCcCC
Q 027793 55 CLSQCRCL-IL-SGLSSLSSLKCLELSGHNFE 84 (219)
Q Consensus 55 ~l~~~~~~-~p-~~~~~l~~L~~L~l~~n~l~ 84 (219)
||++|.+. +| ..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46777776 44 45777889999999998865
Done!