Query 027793
Match_columns 219
No_of_seqs 346 out of 3672
Neff 9.8
Searched_HMMs 29240
Date Tue Mar 26 02:13:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 2.7E-22 9.1E-27 163.6 12.8 171 3-186 128-311 (328)
2 4fcg_A Uncharacterized protein 99.8 1.9E-20 6.6E-25 152.5 12.0 171 1-186 103-287 (328)
3 1ogq_A PGIP-2, polygalacturona 99.8 7E-19 2.4E-23 142.4 7.1 137 2-138 50-197 (313)
4 1ogq_A PGIP-2, polygalacturona 99.7 2.6E-18 8.8E-23 139.0 8.6 135 1-135 75-217 (313)
5 3rgz_A Protein brassinosteroid 99.7 7.1E-18 2.4E-22 151.6 11.7 96 70-176 631-730 (768)
6 1ozn_A Reticulon 4 receptor; N 99.7 3.2E-17 1.1E-21 130.6 13.5 123 2-125 32-163 (285)
7 3rfs_A Internalin B, repeat mo 99.7 2.7E-16 9.4E-21 124.6 17.6 147 1-161 62-216 (272)
8 3rgz_A Protein brassinosteroid 99.7 3.9E-17 1.3E-21 146.7 14.0 135 1-135 417-558 (768)
9 1wwl_A Monocyte differentiatio 99.7 2.1E-17 7.2E-22 133.5 11.0 131 3-134 122-271 (312)
10 2o6q_A Variable lymphocyte rec 99.7 3.1E-16 1E-20 124.1 16.8 122 3-125 38-167 (270)
11 1p9a_G Platelet glycoprotein I 99.7 7E-17 2.4E-21 129.3 13.2 100 2-104 10-110 (290)
12 4ezg_A Putative uncharacterize 99.7 1.5E-16 5.3E-21 120.1 14.2 127 2-132 44-175 (197)
13 3m19_A Variable lymphocyte rec 99.7 4.5E-16 1.5E-20 121.9 17.3 147 2-161 35-190 (251)
14 2xwt_C Thyrotropin receptor; s 99.7 1.5E-17 5.3E-22 129.2 8.5 172 2-187 31-216 (239)
15 3zyi_A Leucine-rich repeat-con 99.7 7.5E-17 2.6E-21 136.5 12.9 131 2-133 75-213 (452)
16 1ozn_A Reticulon 4 receptor; N 99.7 2.9E-16 1E-20 125.0 15.2 173 1-187 55-236 (285)
17 3zyj_A Leucine-rich repeat-con 99.7 1E-16 3.5E-21 135.3 12.8 131 2-133 64-202 (440)
18 2id5_A Lingo-1, leucine rich r 99.7 1E-16 3.5E-21 136.4 12.8 103 1-103 55-161 (477)
19 2z62_A TOLL-like receptor 4, v 99.7 6.9E-17 2.4E-21 128.1 10.8 123 3-125 29-159 (276)
20 4ecn_A Leucine-rich repeat pro 99.7 8.7E-17 3E-21 145.7 12.7 123 1-124 447-604 (876)
21 2o6q_A Variable lymphocyte rec 99.7 4.1E-16 1.4E-20 123.4 14.8 148 1-161 60-216 (270)
22 3e6j_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 121.0 14.1 143 4-161 21-170 (229)
23 2z66_A Variable lymphocyte rec 99.7 3.8E-16 1.3E-20 125.5 14.3 123 3-126 102-234 (306)
24 2z66_A Variable lymphocyte rec 99.7 5.9E-17 2E-21 130.3 9.4 130 2-132 78-215 (306)
25 2z80_A TOLL-like receptor 2, v 99.7 3.2E-17 1.1E-21 134.5 7.8 148 2-160 52-208 (353)
26 1xku_A Decorin; proteoglycan, 99.7 4.1E-16 1.4E-20 126.7 14.2 101 2-104 52-155 (330)
27 4eco_A Uncharacterized protein 99.7 1.8E-17 6E-22 146.1 6.4 136 1-137 205-374 (636)
28 3m19_A Variable lymphocyte rec 99.7 5.2E-16 1.8E-20 121.5 13.9 127 1-128 58-192 (251)
29 3zyj_A Leucine-rich repeat-con 99.7 4.2E-16 1.4E-20 131.5 13.9 129 1-131 87-222 (440)
30 3vq2_A TLR4, TOLL-like recepto 99.7 1E-16 3.4E-21 140.1 10.2 125 2-126 376-508 (606)
31 2o6s_A Variable lymphocyte rec 99.7 1.2E-15 4E-20 116.1 14.8 125 5-133 10-141 (208)
32 2v9t_B SLIT homolog 2 protein 99.7 5.8E-16 2E-20 119.1 13.0 142 5-160 14-162 (220)
33 1h6u_A Internalin H; cell adhe 99.7 8.4E-16 2.9E-20 124.0 14.4 125 2-132 41-167 (308)
34 2ell_A Acidic leucine-rich nuc 99.7 2.8E-16 9.5E-21 115.6 10.5 128 2-133 24-164 (168)
35 2v70_A SLIT-2, SLIT homolog 2 99.7 6E-16 2.1E-20 119.0 12.6 157 5-176 14-178 (220)
36 3rfs_A Internalin B, repeat mo 99.7 1.2E-15 3.9E-20 121.0 14.5 129 1-129 84-219 (272)
37 4ezg_A Putative uncharacterize 99.7 6.6E-16 2.3E-20 116.6 12.1 123 1-126 65-192 (197)
38 3zyi_A Leucine-rich repeat-con 99.7 7.4E-16 2.5E-20 130.4 13.6 125 1-126 98-229 (452)
39 1h6u_A Internalin H; cell adhe 99.7 7.9E-16 2.7E-20 124.1 13.0 127 1-133 62-190 (308)
40 1p9a_G Platelet glycoprotein I 99.7 1.4E-15 4.8E-20 121.7 14.0 146 1-161 54-206 (290)
41 2xwt_C Thyrotropin receptor; s 99.7 2.1E-16 7.3E-21 122.7 8.7 155 1-167 54-221 (239)
42 2o6s_A Variable lymphocyte rec 99.7 4.2E-16 1.4E-20 118.6 10.2 130 2-132 28-165 (208)
43 4glp_A Monocyte differentiatio 99.7 2.5E-16 8.5E-21 127.1 8.9 109 24-133 144-268 (310)
44 2z7x_B TOLL-like receptor 1, v 99.7 8.4E-16 2.9E-20 132.0 12.6 169 3-186 303-478 (520)
45 3o6n_A APL1; leucine-rich repe 99.7 1.4E-15 4.8E-20 126.2 13.5 124 2-125 45-175 (390)
46 2v9t_B SLIT homolog 2 protein 99.7 6.2E-15 2.1E-19 113.3 16.0 125 2-127 32-164 (220)
47 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 8E-16 2.8E-20 133.5 12.0 151 22-186 350-507 (562)
48 2ft3_A Biglycan; proteoglycan, 99.6 1.4E-15 4.6E-20 123.8 12.6 103 2-106 54-159 (332)
49 3vq2_A TLR4, TOLL-like recepto 99.6 4E-16 1.4E-20 136.3 10.1 151 1-162 398-557 (606)
50 3oja_B Anopheles plasmodium-re 99.6 2.4E-15 8.1E-20 131.6 14.2 105 1-105 74-182 (597)
51 3o6n_A APL1; leucine-rich repe 99.6 2.1E-15 7.3E-20 125.1 13.1 123 1-124 68-195 (390)
52 2je0_A Acidic leucine-rich nuc 99.6 4.2E-16 1.4E-20 112.4 7.7 119 2-123 17-148 (149)
53 1h6t_A Internalin B; cell adhe 99.6 4.5E-15 1.5E-19 118.8 14.4 118 3-125 47-166 (291)
54 4g8a_A TOLL-like receptor 4; l 99.6 1.3E-15 4.3E-20 133.2 12.0 129 2-131 52-188 (635)
55 3e6j_A Variable lymphocyte rec 99.6 2.1E-14 7.2E-19 111.0 17.0 126 2-128 40-172 (229)
56 1xku_A Decorin; proteoglycan, 99.6 1.1E-15 3.8E-20 124.1 10.2 122 1-126 75-203 (330)
57 4eco_A Uncharacterized protein 99.6 3.9E-15 1.3E-19 131.2 14.4 130 3-134 434-584 (636)
58 2ft3_A Biglycan; proteoglycan, 99.6 2.7E-15 9.1E-20 122.0 11.9 120 1-125 77-203 (332)
59 2v70_A SLIT-2, SLIT homolog 2 99.6 2.1E-14 7.3E-19 110.3 16.3 129 2-130 32-168 (220)
60 3oja_B Anopheles plasmodium-re 99.6 3E-15 1E-19 131.0 12.9 129 2-131 51-186 (597)
61 1wwl_A Monocyte differentiatio 99.6 8.3E-16 2.8E-20 124.1 8.5 152 1-167 94-269 (312)
62 3t6q_A CD180 antigen; protein- 99.6 2.6E-15 9E-20 131.1 12.3 125 2-126 278-411 (606)
63 1h6t_A Internalin B; cell adhe 99.6 2.3E-15 8E-20 120.4 11.0 143 1-161 67-211 (291)
64 4fmz_A Internalin; leucine ric 99.6 6.3E-15 2.2E-19 120.2 13.8 126 2-132 44-171 (347)
65 3t6q_A CD180 antigen; protein- 99.6 6.5E-15 2.2E-19 128.7 14.4 104 2-105 350-460 (606)
66 2z81_A CD282 antigen, TOLL-lik 99.6 1.7E-15 5.7E-20 130.9 10.5 136 2-137 26-170 (549)
67 2id5_A Lingo-1, leucine rich r 99.6 1.1E-14 3.6E-19 123.9 15.2 130 2-132 32-168 (477)
68 2z63_A TOLL-like receptor 4, v 99.6 4E-15 1.4E-19 128.9 12.7 123 3-125 374-504 (570)
69 3v47_A TOLL-like receptor 5B a 99.6 6.1E-15 2.1E-19 124.5 13.6 163 2-176 239-421 (455)
70 3v47_A TOLL-like receptor 5B a 99.6 5.8E-15 2E-19 124.6 13.3 77 49-125 275-357 (455)
71 2z81_A CD282 antigen, TOLL-lik 99.6 2.7E-15 9.3E-20 129.5 11.5 122 2-124 310-440 (549)
72 3o53_A Protein LRIM1, AGAP0063 99.6 7.5E-16 2.6E-20 124.6 7.4 171 2-190 34-228 (317)
73 2z62_A TOLL-like receptor 4, v 99.6 1.3E-14 4.5E-19 114.9 14.5 107 1-107 51-162 (276)
74 1w8a_A SLIT protein; signaling 99.6 6.1E-15 2.1E-19 111.0 11.8 123 4-128 10-139 (192)
75 2xot_A Amphoterin-induced prot 99.6 5.9E-15 2E-19 121.5 12.6 130 2-133 39-180 (361)
76 4ecn_A Leucine-rich repeat pro 99.6 1.1E-14 3.8E-19 132.0 15.3 145 3-162 674-839 (876)
77 2wfh_A SLIT homolog 2 protein 99.6 9.2E-15 3.1E-19 110.2 11.6 119 5-127 13-138 (193)
78 1xeu_A Internalin C; cellular 99.6 1.8E-14 6.2E-19 113.6 13.7 123 1-131 40-165 (263)
79 3oja_A Leucine-rich immune mol 99.6 1.2E-15 3.9E-20 130.6 6.9 170 2-189 34-227 (487)
80 3bz5_A Internalin-J, INLJ; leu 99.6 1.4E-14 4.8E-19 122.9 13.5 123 1-131 41-164 (457)
81 1m9s_A Internalin B; cell inva 99.6 1.6E-14 5.4E-19 126.5 14.2 125 2-131 65-190 (605)
82 1a9n_A U2A', U2A'; complex (nu 99.6 5.1E-15 1.7E-19 109.8 9.4 121 2-126 19-151 (176)
83 4ay9_X Follicle-stimulating ho 99.6 4.2E-15 1.4E-19 121.9 9.3 133 2-135 30-173 (350)
84 1ziw_A TOLL-like receptor 3; i 99.6 1.3E-14 4.4E-19 128.5 12.9 130 2-132 25-161 (680)
85 1dce_A Protein (RAB geranylger 99.6 1.3E-14 4.5E-19 126.2 12.4 116 3-121 442-566 (567)
86 4b8c_D Glucose-repressible alc 99.6 3.7E-16 1.3E-20 139.5 2.7 109 2-111 224-333 (727)
87 3bz5_A Internalin-J, INLJ; leu 99.6 3.1E-14 1.1E-18 120.8 14.2 122 1-132 63-186 (457)
88 1ziw_A TOLL-like receptor 3; i 99.6 1.8E-14 6.1E-19 127.5 13.1 124 2-125 49-181 (680)
89 4glp_A Monocyte differentiatio 99.6 4.9E-15 1.7E-19 119.4 8.6 131 1-133 144-289 (310)
90 1w8a_A SLIT protein; signaling 99.6 1.6E-14 5.5E-19 108.6 10.8 108 2-109 29-141 (192)
91 2wfh_A SLIT homolog 2 protein 99.6 4.3E-14 1.5E-18 106.5 12.9 103 3-105 32-137 (193)
92 2ell_A Acidic leucine-rich nuc 99.6 9.8E-15 3.3E-19 107.3 9.2 110 1-112 48-164 (168)
93 1o6v_A Internalin A; bacterial 99.6 3.3E-14 1.1E-18 120.7 13.7 98 2-103 199-296 (466)
94 3cvr_A Invasion plasmid antige 99.6 5.5E-14 1.9E-18 122.1 15.1 117 3-133 60-177 (571)
95 1m9s_A Internalin B; cell inva 99.6 1.1E-14 3.9E-19 127.4 10.8 147 1-166 42-190 (605)
96 3j0a_A TOLL-like receptor 5; m 99.6 2.3E-14 7.8E-19 130.0 13.1 131 2-132 24-165 (844)
97 4fmz_A Internalin; leucine ric 99.6 2.7E-14 9.2E-19 116.5 12.3 166 1-187 176-344 (347)
98 2z7x_B TOLL-like receptor 1, v 99.6 1.3E-14 4.4E-19 124.6 10.8 134 2-137 21-162 (520)
99 2z80_A TOLL-like receptor 2, v 99.6 1.7E-14 6E-19 118.1 11.0 103 1-104 99-208 (353)
100 2ast_B S-phase kinase-associat 99.6 5.4E-16 1.8E-20 126.0 1.6 127 2-128 93-235 (336)
101 2xot_A Amphoterin-induced prot 99.6 1E-14 3.5E-19 120.1 9.2 126 1-127 63-201 (361)
102 3o53_A Protein LRIM1, AGAP0063 99.6 2.2E-14 7.6E-19 116.0 10.8 164 2-182 99-268 (317)
103 2z63_A TOLL-like receptor 4, v 99.5 3E-14 1E-18 123.4 11.9 132 1-132 395-535 (570)
104 1xeu_A Internalin C; cellular 99.5 6.2E-14 2.1E-18 110.6 12.5 126 1-133 62-189 (263)
105 3oja_A Leucine-rich immune mol 99.5 1.4E-14 4.7E-19 123.9 9.3 146 2-163 99-250 (487)
106 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 3.4E-14 1.2E-18 123.3 11.7 124 2-127 52-181 (562)
107 2o6r_A Variable lymphocyte rec 99.5 1.4E-13 4.8E-18 101.9 13.1 122 4-128 9-137 (177)
108 1o6v_A Internalin A; bacterial 99.5 1.2E-13 4E-18 117.3 13.4 126 1-132 176-303 (466)
109 2je0_A Acidic leucine-rich nuc 99.5 1.8E-14 6E-19 103.8 7.1 102 1-103 41-149 (149)
110 3j0a_A TOLL-like receptor 5; m 99.5 9.3E-14 3.2E-18 126.1 13.4 136 1-136 47-195 (844)
111 4g8a_A TOLL-like receptor 4; l 99.5 1.1E-13 3.8E-18 120.9 13.3 132 1-133 75-218 (635)
112 3cvr_A Invasion plasmid antige 99.5 1.7E-13 5.7E-18 119.1 14.2 117 2-133 80-197 (571)
113 2o6r_A Variable lymphocyte rec 99.5 8.8E-14 3E-18 103.0 10.7 108 2-109 28-139 (177)
114 2ast_B S-phase kinase-associat 99.5 6.4E-15 2.2E-19 119.6 4.6 150 1-160 117-282 (336)
115 1jl5_A Outer protein YOPM; leu 99.5 3.7E-13 1.3E-17 114.1 15.3 101 25-133 131-232 (454)
116 3g39_A Variable lymphocyte rec 99.5 1.3E-13 4.5E-18 101.7 10.6 101 4-106 11-114 (170)
117 4b8c_D Glucose-repressible alc 99.5 2.7E-14 9.1E-19 127.6 7.5 120 12-133 211-334 (727)
118 2r9u_A Variable lymphocyte rec 99.5 1.8E-13 6.2E-18 101.4 10.9 100 5-106 15-117 (174)
119 3g06_A SSPH2 (leucine-rich rep 99.5 6.1E-13 2.1E-17 116.7 15.1 30 3-35 82-111 (622)
120 4ay9_X Follicle-stimulating ho 99.5 1.8E-13 6.1E-18 112.2 11.0 153 1-167 53-240 (350)
121 1jl5_A Outer protein YOPM; leu 99.5 7.1E-13 2.4E-17 112.3 14.8 124 2-133 131-274 (454)
122 1a9n_A U2A', U2A'; complex (nu 99.5 8.1E-14 2.8E-18 103.2 6.9 104 2-106 42-152 (176)
123 3g06_A SSPH2 (leucine-rich rep 99.5 4.7E-13 1.6E-17 117.5 12.8 118 3-134 41-159 (622)
124 2ca6_A RAN GTPase-activating p 99.4 1.2E-14 4E-19 120.6 -2.4 126 1-126 59-227 (386)
125 1ds9_A Outer arm dynein; leuci 99.3 1.1E-14 3.8E-19 109.9 -4.6 123 4-130 25-155 (198)
126 2ca6_A RAN GTPase-activating p 99.3 1.8E-13 6E-18 113.5 1.9 36 2-37 94-134 (386)
127 1dce_A Protein (RAB geranylger 99.3 2.7E-12 9.3E-17 111.6 9.2 99 1-101 462-567 (567)
128 2ifg_A High affinity nerve gro 99.3 8.1E-12 2.8E-16 101.9 9.5 101 5-106 11-115 (347)
129 1ds9_A Outer arm dynein; leuci 99.3 6E-14 2.1E-18 105.9 -4.0 153 21-187 14-177 (198)
130 2r9u_A Variable lymphocyte rec 99.3 2.2E-11 7.6E-16 90.0 9.0 87 2-88 33-122 (174)
131 3goz_A Leucine-rich repeat-con 99.2 2.3E-12 7.8E-17 106.0 3.6 125 2-126 22-178 (362)
132 3goz_A Leucine-rich repeat-con 99.2 4.1E-12 1.4E-16 104.5 4.2 60 3-62 52-122 (362)
133 3g39_A Variable lymphocyte rec 99.2 5.6E-11 1.9E-15 87.4 9.8 85 2-86 30-117 (170)
134 1z7x_W Ribonuclease inhibitor; 99.2 1.8E-12 6.2E-17 109.4 1.3 102 25-126 199-324 (461)
135 1z7x_W Ribonuclease inhibitor; 99.1 3.7E-12 1.3E-16 107.5 -1.3 153 1-166 226-413 (461)
136 3sb4_A Hypothetical leucine ri 99.0 1.4E-09 4.7E-14 88.1 10.1 60 1-61 48-136 (329)
137 2ifg_A High affinity nerve gro 99.0 1.2E-09 4.3E-14 88.9 8.5 85 1-85 30-117 (347)
138 3un9_A NLR family member X1; l 99.0 6E-11 2.1E-15 98.0 0.5 56 49-104 155-221 (372)
139 2p1m_B Transport inhibitor res 98.9 2.1E-11 7.1E-16 106.0 -3.6 36 24-59 104-140 (594)
140 3ogk_B Coronatine-insensitive 98.9 2E-10 6.8E-15 99.8 1.5 104 1-104 111-230 (592)
141 3ogk_B Coronatine-insensitive 98.9 1.5E-10 5E-15 100.6 0.6 105 1-105 163-304 (592)
142 2p1m_B Transport inhibitor res 98.8 1.2E-09 4.3E-14 94.8 1.0 103 2-104 105-221 (594)
143 3un9_A NLR family member X1; l 98.7 2.5E-09 8.6E-14 88.3 2.4 105 2-106 126-251 (372)
144 1io0_A Tropomodulin; LRR prote 98.7 8.4E-09 2.9E-13 76.8 3.9 106 21-126 32-162 (185)
145 3sb4_A Hypothetical leucine ri 98.7 4.6E-08 1.6E-12 79.1 7.7 86 24-111 225-313 (329)
146 2ra8_A Uncharacterized protein 98.4 3.9E-07 1.3E-11 74.8 6.6 150 1-166 138-322 (362)
147 3e4g_A ATP synthase subunit S, 98.4 2E-07 6.7E-12 68.6 4.2 80 50-130 62-154 (176)
148 1io0_A Tropomodulin; LRR prote 98.4 9.2E-08 3.1E-12 71.1 2.3 83 43-125 30-133 (185)
149 3e4g_A ATP synthase subunit S, 98.3 6.2E-07 2.1E-11 65.9 5.0 86 71-166 61-155 (176)
150 3rw6_A Nuclear RNA export fact 98.3 6.9E-07 2.3E-11 70.2 5.0 64 47-111 168-237 (267)
151 4fdw_A Leucine rich hypothetic 98.2 9.2E-06 3.2E-10 67.6 10.1 99 2-103 180-280 (401)
152 2ra8_A Uncharacterized protein 98.1 2.2E-06 7.4E-11 70.4 5.2 124 1-126 171-318 (362)
153 3rw6_A Nuclear RNA export fact 98.1 3.2E-06 1.1E-10 66.4 5.3 64 68-132 167-237 (267)
154 4fdw_A Leucine rich hypothetic 97.7 0.00033 1.1E-08 58.2 11.1 125 1-132 225-361 (401)
155 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00016 5.5E-09 54.0 4.6 104 22-125 38-167 (197)
156 4h09_A Hypothetical leucine ri 97.3 0.0029 9.9E-08 51.6 11.1 89 21-112 236-326 (379)
157 4gt6_A Cell surface protein; l 97.1 0.0021 7.2E-08 52.9 9.0 101 21-125 261-367 (394)
158 3rfe_A Platelet glycoprotein I 96.9 0.0017 5.9E-08 45.0 5.7 53 6-60 12-66 (130)
159 1pgv_A TMD-1, tropomodulin TMD 96.8 0.001 3.6E-08 49.5 4.1 82 44-125 36-136 (197)
160 4h09_A Hypothetical leucine ri 96.8 0.0056 1.9E-07 49.9 8.6 98 3-103 241-342 (379)
161 4fs7_A Uncharacterized protein 96.8 0.0034 1.2E-07 51.6 7.3 81 21-103 293-375 (394)
162 4gt6_A Cell surface protein; l 96.6 0.005 1.7E-07 50.6 7.0 101 2-105 265-368 (394)
163 4fs7_A Uncharacterized protein 96.5 0.0095 3.3E-07 48.9 8.2 99 2-103 71-194 (394)
164 3rfe_A Platelet glycoprotein I 95.9 0.0067 2.3E-07 41.9 3.8 36 2-37 31-67 (130)
165 2lz0_A Uncharacterized protein 66.0 7.8 0.00027 24.9 3.9 47 12-59 6-53 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=2.7e-22 Score=163.55 Aligned_cols=171 Identities=26% Similarity=0.404 Sum_probs=91.1
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCC---------CCCCcEEeccccccc-ccccCCCCCC
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCN---------LKKLQKLCLSQCRCL-ILSGLSSLSS 72 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~---------l~~L~~L~l~~~~~~-~p~~~~~l~~ 72 (219)
+|++|++++|.++.+|..++.+++|++|++++|...+.+|..+.. +++|++|++++|.+. +|..++.+++
T Consensus 128 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 207 (328)
T 4fcg_A 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN 207 (328)
T ss_dssp TCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTT
T ss_pred CCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCC
Confidence 344444444444444444444444444444444444444443322 444444444444433 4555556666
Q ss_pred CCEEEecCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCC
Q 027793 73 LKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNS 149 (219)
Q Consensus 73 L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~ 149 (219)
|++|++++|.++.+|..+..+++|++|++++|+..+.+|.. +++|+.|++++|..++.+|..+..+
T Consensus 208 L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l----------- 276 (328)
T 4fcg_A 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL----------- 276 (328)
T ss_dssp CCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC-----------
T ss_pred CCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC-----------
Confidence 66666666666666666666666666666666666666543 2466666666666666666554433
Q ss_pred CCCeEEEEcCCcccccccccchhHhHHHHHhhhCCCc
Q 027793 150 YLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGI 186 (219)
Q Consensus 150 ~~l~~l~~~~c~~l~~~~~~~~~~~~~~~~~~~lp~~ 186 (219)
..++.+++++|+.+...+. .+..+..+....+|..
T Consensus 277 ~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCGG
T ss_pred CCCCEEeCCCCCchhhccH--HHhhccCceEEeCCHH
Confidence 1445777777766666553 3334444444444433
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.9e-20 Score=152.54 Aligned_cols=171 Identities=26% Similarity=0.368 Sum_probs=133.8
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCC---------C
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLS---------S 69 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~---------~ 69 (219)
+++|++|++++|.++.+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|... +|..+. .
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 35788888888888888888888888888888888555 77888888888888888887654 555544 3
Q ss_pred CCCCCEEEecCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccCCCCCccccC
Q 027793 70 LSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTR 146 (219)
Q Consensus 70 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~ 146 (219)
+++|++|++++|.++.+|..++.+++|++|++++|.. ..+|.. +++|++|++++|...+.+|..+..+
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l-~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l-------- 252 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR-------- 252 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCC-CCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC--------
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCC-CcCchhhccCCCCCEEECcCCcchhhhHHHhcCC--------
Confidence 8899999999999999998999999999999998654 456653 4789999999999888888776654
Q ss_pred CCCCCCeEEEEcCCcccccccccchhHhHHHHHhhhCCCc
Q 027793 147 GNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGI 186 (219)
Q Consensus 147 ~~~~~l~~l~~~~c~~l~~~~~~~~~~~~~~~~~~~lp~~ 186 (219)
..++.+++++|..+...+. .+..+..+...++.++
T Consensus 253 ---~~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 253 ---APLKRLILKDCSNLLTLPL--DIHRLTQLEKLDLRGC 287 (328)
T ss_dssp ---CCCCEEECTTCTTCCBCCT--TGGGCTTCCEEECTTC
T ss_pred ---CCCCEEECCCCCchhhcch--hhhcCCCCCEEeCCCC
Confidence 2566999999988777664 3455566666666554
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=7e-19 Score=142.36 Aligned_cols=137 Identities=20% Similarity=0.295 Sum_probs=105.5
Q ss_pred CCccEEEeecCCCc---ccCccccCCCCCcEEeccC-CCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCE
Q 027793 2 ELLQEIDLFLSGIK---ELPSSIEHIEGLKCLRLNS-CTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKC 75 (219)
Q Consensus 2 ~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~ 75 (219)
.+++.|+++++.++ .+|..+..+++|++|++++ |.+.+.+|..++.+++|++|++++|.+. +|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 36788888888887 4787888888888888884 7677778888888888888888888875 6777888888888
Q ss_pred EEecCCcCC-ccchhhhCCCCCCEEeccCCCCCCcCCCCC---C-CCCeEeccCCcCCCcCCccccCC
Q 027793 76 LELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPELP---F-CLNYLNTSDCKRLQSLPKISSCL 138 (219)
Q Consensus 76 L~l~~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~---~-~L~~L~l~~~~~l~~lp~~~~~~ 138 (219)
|++++|.++ .+|..+..+++|++|++++|...+.+|..+ . +|++|++++|..-..+|..+..+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 888888887 778888888888888888876655666532 3 77888888865544666655544
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=2.6e-18 Score=139.01 Aligned_cols=135 Identities=16% Similarity=0.250 Sum_probs=102.6
Q ss_pred CCCccEEEeec-CCCcc-cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEE
Q 027793 1 MELLQEIDLFL-SGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCL 76 (219)
Q Consensus 1 l~~L~~L~l~~-~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L 76 (219)
+++|++|++++ |.+.+ +|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+. +|..+..+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 46788888884 77775 7877888888888888888777788888888888888888888876 67778888888888
Q ss_pred EecCCcCC-ccchhhhCCC-CCCEEeccCCCCCCcCCCCC--CCCCeEeccCCcCCCcCCccc
Q 027793 77 ELSGHNFE-SLPTGISQLQ-RLKCLHLINCNMIRSLPELP--FCLNYLNTSDCKRLQSLPKIS 135 (219)
Q Consensus 77 ~l~~n~l~-~lp~~l~~l~-~L~~L~l~~~~~l~~lp~~~--~~L~~L~l~~~~~l~~lp~~~ 135 (219)
++++|.++ .+|..+..++ +|+.|++++|...+.+|..+ ..|+.|++++|..-...|..+
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~ 217 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF 217 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGC
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHH
Confidence 88888887 7888888887 88888888876655666543 137777777764433444333
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.74 E-value=7.1e-18 Score=151.56 Aligned_cols=96 Identities=23% Similarity=0.211 Sum_probs=49.0
Q ss_pred CCCCCEEEecCCcCC-ccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccCCCCCcccc
Q 027793 70 LSSLKCLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQT 145 (219)
Q Consensus 70 l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~ 145 (219)
+++|+.|++++|.++ .+|..++++++|+.|++++|...+.+|.. +++|+.|++++|...+.+|..+..+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l------- 703 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL------- 703 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC-------
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC-------
Confidence 344555555555554 55555555555666666655555555543 2455566666555444555554443
Q ss_pred CCCCCCCeEEEEcCCcccccccccchhHhHH
Q 027793 146 RGNSYLPVMFKFVNCVKLHKGTERNFFANFQ 176 (219)
Q Consensus 146 ~~~~~~l~~l~~~~c~~l~~~~~~~~~~~~~ 176 (219)
..++.++++++.--..+|....+..+.
T Consensus 704 ----~~L~~L~ls~N~l~g~iP~~~~~~~~~ 730 (768)
T 3rgz_A 704 ----TMLTEIDLSNNNLSGPIPEMGQFETFP 730 (768)
T ss_dssp ----CCCSEEECCSSEEEEECCSSSSGGGSC
T ss_pred ----CCCCEEECcCCcccccCCCchhhccCC
Confidence 134466666653333344333333333
No 6
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=3.2e-17 Score=130.63 Aligned_cols=123 Identities=24% Similarity=0.208 Sum_probs=67.6
Q ss_pred CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccc-cc--ccccCCCCCCCCEEE
Q 027793 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-CL--ILSGLSSLSSLKCLE 77 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~--~p~~~~~l~~L~~L~ 77 (219)
++|++|++++|.++.++. .+..+++|++|++++|.+.+..|..+..+++|++|++++|. +. .|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 356666666666666553 35666666666666665544445556666666666666664 32 244555556666666
Q ss_pred ecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCC
Q 027793 78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDC 125 (219)
Q Consensus 78 l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~ 125 (219)
+++|.++.+ |..+..+++|++|++++|.. +.++. . +++|++|++++|
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcc-cccCHhHhccCCCccEEECCCC
Confidence 666665544 33455555666666655432 23332 1 245555555553
No 7
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=2.7e-16 Score=124.57 Aligned_cols=147 Identities=20% Similarity=0.243 Sum_probs=91.3
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEEe
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLEL 78 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~l 78 (219)
+++|++|++++|.+++++ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. + +..+..+++|++|++
T Consensus 62 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp CTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 356777777777776654 4666777777777777555555555667777777777777665 2 334667777777777
Q ss_pred cCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcCCCcCCcc-ccCCCCCccccCCCCCCC
Q 027793 79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPKI-SSCLETPSNQTRGNSYLP 152 (219)
Q Consensus 79 ~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~~~~~~~l 152 (219)
++|.++.+|.. +..+++|+.|++++|+.. .++. . +++|++|++++|. ++.++.. +..+ ..+
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l-----------~~L 207 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRL-----------TSL 207 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC-----------TTC
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCC-----------cCC
Confidence 77777765543 466777777777775433 3432 1 3577777777753 4444432 2222 145
Q ss_pred eEEEEcCCc
Q 027793 153 VMFKFVNCV 161 (219)
Q Consensus 153 ~~l~~~~c~ 161 (219)
+.+++++++
T Consensus 208 ~~L~l~~N~ 216 (272)
T 3rfs_A 208 QYIWLHDNP 216 (272)
T ss_dssp CEEECCSSC
T ss_pred CEEEccCCC
Confidence 577777664
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=3.9e-17 Score=146.74 Aligned_cols=135 Identities=25% Similarity=0.318 Sum_probs=89.4
Q ss_pred CCCccEEEeecCCCcc-cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~ 77 (219)
+++|++|++++|.+++ +|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+. +|..+..+++|++|+
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence 3567777777777664 5666777777777777777666666766777777777777777655 566666667777777
Q ss_pred ecCCcCC-ccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccc
Q 027793 78 LSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKIS 135 (219)
Q Consensus 78 l~~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~ 135 (219)
+++|+++ .+|.+++.+++|+.|++++|...+.+|.. +++|+.|++++|.....+|..+
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 7777766 66666666777777777766655566643 2566666666665555555443
No 9
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=2.1e-17 Score=133.50 Aligned_cols=131 Identities=24% Similarity=0.251 Sum_probs=60.5
Q ss_pred CccEEEeecCCCcccCccccCC-----CCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc----ccccC--CCCC
Q 027793 3 LLQEIDLFLSGIKELPSSIEHI-----EGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL----ILSGL--SSLS 71 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l-----~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~----~p~~~--~~l~ 71 (219)
+|++|++++|.++++|..++.+ ++|++|++++|.+.+..|..++.+++|++|++++|... .|..+ ..++
T Consensus 122 ~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 201 (312)
T 1wwl_A 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201 (312)
T ss_dssp CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT
T ss_pred CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC
Confidence 4444444444444444333333 44555555554444433444555555555555555432 22222 4555
Q ss_pred CCCEEEecCCcCCccc---h-hhhCCCCCCEEeccCCCCCCcCCC----CCCCCCeEeccCCcCCCcCCcc
Q 027793 72 SLKCLELSGHNFESLP---T-GISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKRLQSLPKI 134 (219)
Q Consensus 72 ~L~~L~l~~n~l~~lp---~-~l~~l~~L~~L~l~~~~~l~~lp~----~~~~L~~L~l~~~~~l~~lp~~ 134 (219)
+|++|++++|.++.++ . .+..+++|+.|++++|......|. .+++|++|++++| .++.+|..
T Consensus 202 ~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~ 271 (312)
T 1wwl_A 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKG 271 (312)
T ss_dssp TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSS
T ss_pred CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhh
Confidence 5555555555555222 1 123445555555555443332221 1245555555553 34455443
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=3.1e-16 Score=124.11 Aligned_cols=122 Identities=24% Similarity=0.293 Sum_probs=64.1
Q ss_pred CccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEec
Q 027793 3 LLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLELS 79 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l~ 79 (219)
++++|++++|.++.++. .+..+++|++|++++|.+....+..+..+++|++|++++|.+. +| ..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 46666666666666554 3566666666666666444333333455666666666666554 22 234555555555555
Q ss_pred CCcCCccch-hhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCC
Q 027793 80 GHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDC 125 (219)
Q Consensus 80 ~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~ 125 (219)
+|.++.++. .+..+++|++|++++|. ++.+|.. +++|++|++++|
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCC
Confidence 555554432 34555555555555542 2333321 245555555553
No 11
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=7e-17 Score=129.30 Aligned_cols=100 Identities=21% Similarity=0.228 Sum_probs=51.4
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecC
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~ 80 (219)
++++++++++++++.+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+. ++. ...+++|++|++++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSH 86 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCS
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCEEECCC
Confidence 445556666655555555432 45555555555444444445555555555555555544 221 24445555555555
Q ss_pred CcCCccchhhhCCCCCCEEeccCC
Q 027793 81 HNFESLPTGISQLQRLKCLHLINC 104 (219)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~~ 104 (219)
|.++.+|..+..+++|++|++++|
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSS
T ss_pred CcCCcCchhhccCCCCCEEECCCC
Confidence 555555544444555555555543
No 12
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.5e-16 Score=120.13 Aligned_cols=127 Identities=23% Similarity=0.249 Sum_probs=109.7
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEec
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~ 79 (219)
++|++|++++|.++++| .+..+++|++|++++|. ...+ ..+..+++|++|++++|.+. .+..+..+++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 57999999999999999 58999999999999993 3444 37889999999999999987 57889999999999999
Q ss_pred CCcCC-ccchhhhCCCCCCEEeccCCCCCCcCCCC--CCCCCeEeccCCcCCCcCC
Q 027793 80 GHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSLP 132 (219)
Q Consensus 80 ~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~--~~~L~~L~l~~~~~l~~lp 132 (219)
+|.++ ..|..+..+++|++|++++|..++.+|.. +++|++|++++| .++.++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n-~i~~~~ 175 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD-GVHDYR 175 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTB-CCCCCT
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCC-CCcChH
Confidence 99998 57788999999999999998767777743 478999999996 466665
No 13
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=4.5e-16 Score=121.88 Aligned_cols=147 Identities=24% Similarity=0.313 Sum_probs=112.3
Q ss_pred CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~l 78 (219)
++++.|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. + +..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 468889999998888655 4888899999999998777777777888999999999999876 3 356788899999999
Q ss_pred cCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcCCCcCCc-cccCCCCCccccCCCCCCC
Q 027793 79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPK-ISSCLETPSNQTRGNSYLP 152 (219)
Q Consensus 79 ~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~l~~lp~-~~~~~~~~~~~~~~~~~~l 152 (219)
++|.++.+|.. +..+++|+.|++++|. ++.+|. . +++|++|++++| .++.+|. .+..+ ..+
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l-----------~~L 181 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRL-----------GKL 181 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC-----------TTC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCC-----------CCC
Confidence 99999877764 5788999999999864 455554 2 368999999886 4566654 23222 145
Q ss_pred eEEEEcCCc
Q 027793 153 VMFKFVNCV 161 (219)
Q Consensus 153 ~~l~~~~c~ 161 (219)
+.+++++++
T Consensus 182 ~~L~l~~N~ 190 (251)
T 3m19_A 182 QTITLFGNQ 190 (251)
T ss_dssp CEEECCSCC
T ss_pred CEEEeeCCc
Confidence 588887763
No 14
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=1.5e-17 Score=129.20 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=129.3
Q ss_pred CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCC-ccccCCCCCCcEEeccc-cccc-cc-ccCCCCCCCCEE
Q 027793 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFL-PESLCNLKKLQKLCLSQ-CRCL-IL-SGLSSLSSLKCL 76 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~-~~~~-~p-~~~~~l~~L~~L 76 (219)
+++++|++++|+++.+|. .+..+++|++|++++|...+.+ +..+..+++|++|++++ |.+. ++ ..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 468999999999999877 5889999999999999634444 44788999999999998 7766 44 567889999999
Q ss_pred EecCCcCCccchhhhCCCCCC---EEeccCCCCCCcCCCC----CCCCC-eEeccCCcCCCcCCccccCCCCCccccCCC
Q 027793 77 ELSGHNFESLPTGISQLQRLK---CLHLINCNMIRSLPEL----PFCLN-YLNTSDCKRLQSLPKISSCLETPSNQTRGN 148 (219)
Q Consensus 77 ~l~~n~l~~lp~~l~~l~~L~---~L~l~~~~~l~~lp~~----~~~L~-~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~ 148 (219)
++++|.++.+|. +..+++|+ .|++++|..++.+|.. +++|+ .|++++| .++.+|......
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~---------- 178 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG---------- 178 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT----------
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC----------
Confidence 999999999986 88888888 9999997466666643 46888 9999885 566777643322
Q ss_pred CCCCeEEEEcCCcccccccccchhHhH-HHHHhhhCCCcc
Q 027793 149 SYLPVMFKFVNCVKLHKGTERNFFANF-QRRVHNALPGIL 187 (219)
Q Consensus 149 ~~~l~~l~~~~c~~l~~~~~~~~~~~~-~~~~~~~lp~~~ 187 (219)
..++.+++++++.++..+. ..+..+ ..+...++.++.
T Consensus 179 -~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp -CEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCC
T ss_pred -CCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCc
Confidence 1566889988866776644 233333 344444444443
No 15
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=7.5e-17 Score=136.54 Aligned_cols=131 Identities=23% Similarity=0.329 Sum_probs=104.8
Q ss_pred CCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l 78 (219)
+++++|++++|.++.+ |..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +| ..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4688999999999986 455889999999999999777767778888999999999999876 44 45788899999999
Q ss_pred cCCcCCccch-hhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCCCcCCc
Q 027793 79 SGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 79 ~~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l~~lp~ 133 (219)
++|.++.+|. .+.++++|+.|++++|+.++.++.. +++|+.|++++| .++.+|.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~ 213 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN 213 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc
Confidence 9999887765 5778888888888887777777642 467888888775 4555653
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=2.9e-16 Score=125.00 Aligned_cols=173 Identities=18% Similarity=0.164 Sum_probs=119.3
Q ss_pred CCCccEEEeecCCCccc-CccccCCCCCcEEeccCCC-CCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEE
Q 027793 1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCT-KLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCL 76 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L 76 (219)
+++|++|++++|.++++ |..+..+++|++|++++|. +....|..+..+++|++|++++|.+. .|..+..+++|++|
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 46789999999999886 5568889999999999986 44444677888999999999998876 45667888899999
Q ss_pred EecCCcCCccch-hhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCC
Q 027793 77 ELSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYL 151 (219)
Q Consensus 77 ~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~ 151 (219)
++++|.++.++. .+..+++|++|++++|. ++.+|.. +++|++|++++|......|..+..+ ..
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----------~~ 202 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL-----------GR 202 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-----------TT
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCc-----------cc
Confidence 999998887765 47788889999998864 4445432 3688888888865333335444432 13
Q ss_pred CeEEEEcCCcccccccccchhHhHHHHHhhhCCCcc
Q 027793 152 PVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGIL 187 (219)
Q Consensus 152 l~~l~~~~c~~l~~~~~~~~~~~~~~~~~~~lp~~~ 187 (219)
++.++++++ .+...+. ..+..+..+...++.++.
T Consensus 203 L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 203 LMTLYLFAN-NLSALPT-EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCEEECCSS-CCSCCCH-HHHTTCTTCCEEECCSSC
T ss_pred ccEeeCCCC-cCCcCCH-HHcccCcccCEEeccCCC
Confidence 446666665 3443332 233344444444555543
No 17
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=135.30 Aligned_cols=131 Identities=25% Similarity=0.317 Sum_probs=98.9
Q ss_pred CCccEEEeecCCCcccC-ccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l 78 (219)
+++++|++++|.++.++ ..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +| ..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 46788888888888865 45888888888888888766666677888888888888888776 44 35778888888888
Q ss_pred cCCcCCccch-hhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCCCcCCc
Q 027793 79 SGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 79 ~~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l~~lp~ 133 (219)
++|.++.++. .+..+++|+.|++++|+.+..++.. +++|++|++++| .++.+|.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~ 202 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN 202 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc
Confidence 8888886654 5677888888888887777766642 367777777775 4566653
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=136.42 Aligned_cols=103 Identities=22% Similarity=0.270 Sum_probs=55.1
Q ss_pred CCCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~ 77 (219)
+++|++|++++|.++.+ |..|..+++|++|++++|.+....+..+..+++|++|++++|.+. .+..+..+++|++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 35666777776666664 445666666666666666444333334556666666666666544 233444444555555
Q ss_pred ecCCcCCcc-chhhhCCCCCCEEeccC
Q 027793 78 LSGHNFESL-PTGISQLQRLKCLHLIN 103 (219)
Q Consensus 78 l~~n~l~~l-p~~l~~l~~L~~L~l~~ 103 (219)
+++|.++.+ +..+..+++|+.|++++
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred CCCCccceeChhhccCCCCCCEEECCC
Confidence 544444422 22344444444444444
No 19
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=6.9e-17 Score=128.08 Aligned_cols=123 Identities=28% Similarity=0.301 Sum_probs=82.3
Q ss_pred CccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEec
Q 027793 3 LLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~ 79 (219)
+|++|++++|.+++++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 57778888887777665 4777778888888777655555556777777888888777765 33556677777777777
Q ss_pred CCcCCccch-hhhCCCCCCEEeccCCCCCC-cCCCC---CCCCCeEeccCC
Q 027793 80 GHNFESLPT-GISQLQRLKCLHLINCNMIR-SLPEL---PFCLNYLNTSDC 125 (219)
Q Consensus 80 ~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~-~lp~~---~~~L~~L~l~~~ 125 (219)
+|.++.++. .+..+++|++|++++|.... .+|.. +++|++|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 777665544 46667777777777654332 23433 356777777665
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=8.7e-17 Score=145.66 Aligned_cols=123 Identities=19% Similarity=0.270 Sum_probs=87.3
Q ss_pred CCCccEEEeecCCCcc------------------cCcccc--CCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccc
Q 027793 1 MELLQEIDLFLSGIKE------------------LPSSIE--HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 60 (219)
|++|++|++++|.++. +|..++ .+++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 5789999999999988 888877 89999999999998888999889999999999999886
Q ss_pred -cc---ccccC-------CCCCCCCEEEecCCcCCccch--hhhCCCCCCEEeccCCCCCCcCCCC--CCCCCeEeccC
Q 027793 61 -CL---ILSGL-------SSLSSLKCLELSGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSD 124 (219)
Q Consensus 61 -~~---~p~~~-------~~l~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~~~~l~~lp~~--~~~L~~L~l~~ 124 (219)
+. +|..+ ..+++|+.|++++|.++.+|. .++++++|+.|++++|... .+|.. +++|+.|++++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDY 604 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcC
Confidence 32 34332 333467777777766666666 6666666666666665432 45421 13444444444
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=4.1e-16 Score=123.40 Aligned_cols=148 Identities=22% Similarity=0.277 Sum_probs=110.9
Q ss_pred CCCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~ 77 (219)
+++|++|++++|.++.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+..+..+++|++|+
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 46789999999998888776 578899999999988766555556778899999999998876 345578889999999
Q ss_pred ecCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcCCCcCCcc-ccCCCCCccccCCCCCC
Q 027793 78 LSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPKI-SSCLETPSNQTRGNSYL 151 (219)
Q Consensus 78 l~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~~~~~~~ 151 (219)
+++|.++.+|.. +..+++|+.|++++|. ++.++. . +++|++|++++| .++.+|.. +..+ ..
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l-----------~~ 206 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSL-----------EK 206 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC-----------TT
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccc-----------cC
Confidence 999998877754 6888999999998864 444543 2 368899999886 56666653 2222 14
Q ss_pred CeEEEEcCCc
Q 027793 152 PVMFKFVNCV 161 (219)
Q Consensus 152 l~~l~~~~c~ 161 (219)
++.+++++++
T Consensus 207 L~~L~l~~N~ 216 (270)
T 2o6q_A 207 LKMLQLQENP 216 (270)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEecCCC
Confidence 5577777764
No 22
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=3.5e-16 Score=120.97 Aligned_cols=143 Identities=20% Similarity=0.205 Sum_probs=102.2
Q ss_pred ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEecCC
Q 027793 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLELSGH 81 (219)
Q Consensus 4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l~~n 81 (219)
.+.++.+++.++.+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+. +| ..+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3567777788888887553 77888888888777776777888888888888888876 44 44677888888888888
Q ss_pred cCCccchh-hhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCcc-ccCCCCCccccCCCCCCCeEEE
Q 027793 82 NFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI-SSCLETPSNQTRGNSYLPVMFK 156 (219)
Q Consensus 82 ~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~~~~~~~l~~l~ 156 (219)
.++.++.. +..+++|+.|++++|. +..+|.. +++|+.|++++| .++.+|.. +..+ ..++.++
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l-----------~~L~~L~ 165 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRL-----------SSLTHAY 165 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTC-----------TTCCEEE
T ss_pred cCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCC-----------CCCCEEE
Confidence 88877654 5778888888888754 5577754 367888888875 56666643 2222 1445777
Q ss_pred EcCCc
Q 027793 157 FVNCV 161 (219)
Q Consensus 157 ~~~c~ 161 (219)
+.+.+
T Consensus 166 l~~N~ 170 (229)
T 3e6j_A 166 LFGNP 170 (229)
T ss_dssp CTTSC
T ss_pred eeCCC
Confidence 77653
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=3.8e-16 Score=125.51 Aligned_cols=123 Identities=22% Similarity=0.256 Sum_probs=57.1
Q ss_pred CccEEEeecCCCcccCc--cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc---ccccCCCCCCCCEEE
Q 027793 3 LLQEIDLFLSGIKELPS--SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLSSLKCLE 77 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L~~L~ 77 (219)
+|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .|..+..+++|++|+
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 34444444444443332 2344444444444444433333444444455555555555432 344455555555555
Q ss_pred ecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCC----CCCCCCeEeccCCc
Q 027793 78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCK 126 (219)
Q Consensus 78 l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~----~~~~L~~L~l~~~~ 126 (219)
+++|.++.+ |..+..+++|+.|++++|.. ..++. .+++|+.|++++|.
T Consensus 182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCC-SBCCSGGGTTCTTCCEEECTTSC
T ss_pred CCCCCcCCcCHHHhcCCCCCCEEECCCCcc-CccChhhccCcccCCEeECCCCC
Confidence 555555533 34455555555555555432 22222 12455555555543
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=5.9e-17 Score=130.27 Aligned_cols=130 Identities=25% Similarity=0.357 Sum_probs=76.2
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCc-cccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l 78 (219)
++|++|++++|.++.+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. .+..+..+++|++|++
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 45555666666555555556666666666666654433322 34556666666666666554 4445666667777777
Q ss_pred cCCcCCc--cchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCC
Q 027793 79 SGHNFES--LPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLP 132 (219)
Q Consensus 79 ~~n~l~~--lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp 132 (219)
++|.++. +|..+..+++|++|++++|......|.. +++|++|++++|. ++.++
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 215 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLD 215 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCC
T ss_pred CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccC
Confidence 7776653 5666666777777777765443333332 3567777776653 44443
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=3.2e-17 Score=134.45 Aligned_cols=148 Identities=22% Similarity=0.198 Sum_probs=104.8
Q ss_pred CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cccc-CCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSG-LSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~-~~~l~~L~~L~l 78 (219)
++|++|++++|.++++|. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +|.. +..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 367888888888888766 5778888888888888666655667778888888888888766 4433 777888888888
Q ss_pred cCCcCCccch--hhhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCC
Q 027793 79 SGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLP 152 (219)
Q Consensus 79 ~~n~l~~lp~--~l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l 152 (219)
++|.++.+|. .+..+++|++|++++|+.++.++. . +++|++|++++|..-...|..+..+ ..+
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-----------~~L 200 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI-----------QNV 200 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC-----------SEE
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc-----------ccC
Confidence 8888887775 567788888888888755555542 2 3577888888765333334444433 145
Q ss_pred eEEEEcCC
Q 027793 153 VMFKFVNC 160 (219)
Q Consensus 153 ~~l~~~~c 160 (219)
+.++++++
T Consensus 201 ~~L~l~~n 208 (353)
T 2z80_A 201 SHLILHMK 208 (353)
T ss_dssp EEEEEECS
T ss_pred CeecCCCC
Confidence 57777766
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=4.1e-16 Score=126.69 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=69.6
Q ss_pred CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~ 79 (219)
+++++|++++|.+++++. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 468889999998888766 5888899999999988777777888888899999999888765 443332 455555555
Q ss_pred CCcCCccch-hhhCCCCCCEEeccCC
Q 027793 80 GHNFESLPT-GISQLQRLKCLHLINC 104 (219)
Q Consensus 80 ~n~l~~lp~-~l~~l~~L~~L~l~~~ 104 (219)
+|.++.++. .+.++++|+.|++++|
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSS
T ss_pred CCcccccCHhHhcCCccccEEECCCC
Confidence 555554332 3444555555555543
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.69 E-value=1.8e-17 Score=146.14 Aligned_cols=136 Identities=16% Similarity=0.274 Sum_probs=113.0
Q ss_pred CCCccEEEeecCCCcc------------------cCcccc--CCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccc
Q 027793 1 MELLQEIDLFLSGIKE------------------LPSSIE--HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 60 (219)
+++|++|++++|.++. +|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 5789999999999999 999988 99999999999999999999999999999999999997
Q ss_pred -cc---ccccCCCC------CCCCEEEecCCcCCccch--hhhCCCCCCEEeccCCCCCCcCCCC--CCCCCeEeccCCc
Q 027793 61 -CL---ILSGLSSL------SSLKCLELSGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCK 126 (219)
Q Consensus 61 -~~---~p~~~~~l------~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~~~~l~~lp~~--~~~L~~L~l~~~~ 126 (219)
+. +|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|...+.+|.. +++|+.|++++|
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N- 363 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN- 363 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS-
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC-
Confidence 53 67666665 899999999999999988 8899999999999987665577722 257777777775
Q ss_pred CCCcCCccccC
Q 027793 127 RLQSLPKISSC 137 (219)
Q Consensus 127 ~l~~lp~~~~~ 137 (219)
.++.+|..+..
T Consensus 364 ~l~~lp~~l~~ 374 (636)
T 4eco_A 364 QITEIPANFCG 374 (636)
T ss_dssp EEEECCTTSEE
T ss_pred ccccccHhhhh
Confidence 34466655443
No 28
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=5.2e-16 Score=121.48 Aligned_cols=127 Identities=20% Similarity=0.245 Sum_probs=107.7
Q ss_pred CCCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~ 77 (219)
+++|++|++++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +| ..+..+++|++|+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 47899999999999997664 889999999999999877666677889999999999999887 44 4468899999999
Q ss_pred ecCCcCCccch-hhhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcCC
Q 027793 78 LSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRL 128 (219)
Q Consensus 78 l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~l 128 (219)
+++|.++.+|. .+..+++|++|++++|.. +.+|. . +++|+.|++++|+.-
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCcee
Confidence 99999998876 688999999999999754 45553 2 478999999997643
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=4.2e-16 Score=131.52 Aligned_cols=129 Identities=22% Similarity=0.324 Sum_probs=94.5
Q ss_pred CCCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~ 77 (219)
+++|++|++++|.++.++. .|..+++|++|++++|.+....+..+..+++|++|++++|.+. + +..+..+++|++|+
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 4688999999999988764 5888999999999998666555556888999999999998876 3 34577778888888
Q ss_pred ecCCc-CCccch-hhhCCCCCCEEeccCCCCCCcCCCC--CCCCCeEeccCCcCCCcC
Q 027793 78 LSGHN-FESLPT-GISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSL 131 (219)
Q Consensus 78 l~~n~-l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~--~~~L~~L~l~~~~~l~~l 131 (219)
+++|. ++.++. .+..+++|++|++++| .++.+|.. +++|+.|++++| .++.+
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~ 222 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGN-HLSAI 222 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTS-CCCEE
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCC-ccCcc
Confidence 87744 555554 5677778888888775 44566643 357777777775 34443
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.68 E-value=1e-16 Score=140.12 Aligned_cols=125 Identities=22% Similarity=0.282 Sum_probs=67.8
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCc-cccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l 78 (219)
++|++|++++|.++.+|..+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+. .|..+..+++|++|++
T Consensus 376 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455 (606)
T ss_dssp SCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred CcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence 44555555555555555555555556666665554444444 34555566666666665544 3445555566666666
Q ss_pred cCCcCCc--cchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCc
Q 027793 79 SGHNFES--LPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCK 126 (219)
Q Consensus 79 ~~n~l~~--lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~ 126 (219)
++|.++. +|..++.+++|+.|++++|...+..|.. +++|++|++++|.
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 6665552 4555555666666666655443333332 2456666666553
No 31
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=1.2e-15 Score=116.07 Aligned_cols=125 Identities=26% Similarity=0.360 Sum_probs=77.1
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEecCCc
Q 027793 5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLELSGHN 82 (219)
Q Consensus 5 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l~~n~ 82 (219)
+.++.+++.++.+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+. +| ..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45566666666666543 346777777777555444445666777777777777655 33 335667777777777777
Q ss_pred CCccchh-hhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCCCcCCc
Q 027793 83 FESLPTG-ISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 83 l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l~~lp~ 133 (219)
++.+|.. +..+++|++|++++|. ++.+|.. +++|++|++++| .++.+|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 141 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPD 141 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCH
Confidence 7766543 4667777777777654 3344431 356777777764 4455544
No 32
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=5.8e-16 Score=119.10 Aligned_cols=142 Identities=25% Similarity=0.267 Sum_probs=103.7
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecCCc
Q 027793 5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSGHN 82 (219)
Q Consensus 5 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~n~ 82 (219)
+.++.++++++.+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+. .|..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467778888888887654 67888999888666555557888888999999988876 46778888889999999998
Q ss_pred CCccchh-hhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCcc-ccCCCCCccccCCCCCCCeEEEE
Q 027793 83 FESLPTG-ISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI-SSCLETPSNQTRGNSYLPVMFKF 157 (219)
Q Consensus 83 l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~~~~~~~l~~l~~ 157 (219)
++.+|.. +..+++|+.|++++|......|.. +++|+.|++++| .++.++.. +..+ ..++.+++
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l-----------~~L~~L~L 159 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPL-----------RAIQTMHL 159 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC-----------TTCCEEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCC-----------CCCCEEEe
Confidence 8887765 577888999999886544433433 368888888885 46666543 3222 13457777
Q ss_pred cCC
Q 027793 158 VNC 160 (219)
Q Consensus 158 ~~c 160 (219)
++.
T Consensus 160 ~~N 162 (220)
T 2v9t_B 160 AQN 162 (220)
T ss_dssp CSS
T ss_pred CCC
Confidence 665
No 33
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=8.4e-16 Score=123.98 Aligned_cols=125 Identities=22% Similarity=0.311 Sum_probs=73.3
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCC
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH 81 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n 81 (219)
++|++|+++++.++.+| .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.....+..+++|++|++++|
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTS
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCC
Confidence 35666777766666665 3666667777777666433 3333 6666667777776666553335666666666666666
Q ss_pred cCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCC
Q 027793 82 NFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLP 132 (219)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp 132 (219)
.++.++. +..+++|+.|++++|. +..++. .+++|++|++++| .++.++
T Consensus 118 ~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~~~ 167 (308)
T 1h6u_A 118 QITDVTP-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNA-QVSDLT 167 (308)
T ss_dssp CCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSS-CCCCCG
T ss_pred CCCCchh-hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCC-cCCCCh
Confidence 6665553 5666666666666643 333332 2345666666654 344444
No 34
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=2.8e-16 Score=115.62 Aligned_cols=128 Identities=27% Similarity=0.362 Sum_probs=101.1
Q ss_pred CCccEEEeecCCCc--ccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793 2 ELLQEIDLFLSGIK--ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE 77 (219)
Q Consensus 2 ~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~ 77 (219)
++|++|++++|.++ .+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+. +|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 57889999999888 6888788889999999999875544 67888999999999999876 555566688999999
Q ss_pred ecCCcCCccc--hhhhCCCCCCEEeccCCCCCCcCCC-------CCCCCCeEeccCCcCCCcCCc
Q 027793 78 LSGHNFESLP--TGISQLQRLKCLHLINCNMIRSLPE-------LPFCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 78 l~~n~l~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~-------~~~~L~~L~l~~~~~l~~lp~ 133 (219)
+++|.++.+| ..+..+++|+.|++++|. +..+|. .+++|++|++++|. ..++|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 9999988776 678888999999999865 445554 25788899988864 555554
No 35
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=6e-16 Score=118.98 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=115.4
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCc-cccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEEecCC
Q 027793 5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLELSGH 81 (219)
Q Consensus 5 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~l~~n 81 (219)
+.++++++.++++|..+. ..+++|++++|.+.+..| ..+..+++|++|++++|.+. + +..+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 578999999999998654 457899999997665544 34788999999999999877 3 447899999999999999
Q ss_pred cCCccch-hhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcC-CccccCCCCCccccCCCCCCCeEEE
Q 027793 82 NFESLPT-GISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSL-PKISSCLETPSNQTRGNSYLPVMFK 156 (219)
Q Consensus 82 ~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~l-p~~~~~~~~~~~~~~~~~~~l~~l~ 156 (219)
.++.++. .+..+++|++|++++|......|.. +++|+.|++++| .++.+ |..+..+ ..++.++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l-----------~~L~~L~ 159 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTL-----------HSLSTLN 159 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTC-----------TTCCEEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCC-----------CCCCEEE
Confidence 9997765 5788999999999997655444543 378999999986 45555 5555443 1455788
Q ss_pred EcCCcccccccccchhHhHH
Q 027793 157 FVNCVKLHKGTERNFFANFQ 176 (219)
Q Consensus 157 ~~~c~~l~~~~~~~~~~~~~ 176 (219)
+++. .+.-.+....+..|.
T Consensus 160 L~~N-~l~c~c~l~~l~~~~ 178 (220)
T 2v70_A 160 LLAN-PFNCNCYLAWLGEWL 178 (220)
T ss_dssp CCSC-CEECSGGGHHHHHHH
T ss_pred ecCc-CCcCCCchHHHHHHH
Confidence 8776 444444433443333
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=1.2e-15 Score=120.95 Aligned_cols=129 Identities=22% Similarity=0.245 Sum_probs=107.7
Q ss_pred CCCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~ 77 (219)
+++|++|++++|.+++++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+. ++ ..+..+++|++|+
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 47899999999999997765 789999999999999877766667889999999999999876 43 4578999999999
Q ss_pred ecCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCC
Q 027793 78 LSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQ 129 (219)
Q Consensus 78 l~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~ 129 (219)
+++|.++.++.. +..+++|+.|++++|...+..|.. +++|+.|++++|+...
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 999999977654 688999999999997655444432 4789999999985443
No 37
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=6.6e-16 Score=116.64 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=106.7
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEe
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLEL 78 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l 78 (219)
+++|++|++++|.++.++ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .|..+..+++|++|++
T Consensus 65 l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 65 AHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp CTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 478999999999887776 4889999999999999887777888999999999999999987 4788999999999999
Q ss_pred cCCc-CCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCc
Q 027793 79 SGHN-FESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCK 126 (219)
Q Consensus 79 ~~n~-l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~ 126 (219)
++|. ++.+| .+..+++|+.|++++|. +..++. .+++|++|++++|+
T Consensus 144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 144 SYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred cCCCCccccH-hhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence 9998 88888 78999999999999975 455653 25789999999864
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=7.4e-16 Score=130.45 Aligned_cols=125 Identities=24% Similarity=0.293 Sum_probs=93.8
Q ss_pred CCCccEEEeecCCCcccC-ccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~ 77 (219)
+++|++|++++|.++.++ ..|..+++|++|++++|.+....+..+..+++|++|++++|.+. +| ..+..+++|++|+
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 468999999999999865 45888999999999998766555556888999999999999876 33 4577788888888
Q ss_pred ecCCc-CCccch-hhhCCCCCCEEeccCCCCCCcCCCC--CCCCCeEeccCCc
Q 027793 78 LSGHN-FESLPT-GISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCK 126 (219)
Q Consensus 78 l~~n~-l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~--~~~L~~L~l~~~~ 126 (219)
+++|. ++.++. .+..+++|+.|++++|+ +..+|.. +++|+.|++++|.
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSC
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCc
Confidence 88744 666654 46777888888888753 4555543 3577777777754
No 39
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=7.9e-16 Score=124.13 Aligned_cols=127 Identities=18% Similarity=0.287 Sum_probs=101.3
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecC
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~ 80 (219)
+++|++|++++|.+++++. +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.....+..+++|++|++++
T Consensus 62 l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCC
Confidence 4789999999999999887 8899999999999986544 44 6888999999999999877333488889999999999
Q ss_pred CcCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCCc
Q 027793 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp~ 133 (219)
|.++.++. +..+++|+.|++++|. +..++. .+++|+.|++++| .++.++.
T Consensus 139 n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~~~~ 190 (308)
T 1h6u_A 139 NQITNISP-LAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDN-KISDISP 190 (308)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCGG
T ss_pred CccCcCcc-ccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCC-ccCcChh
Confidence 99887775 7888899999999864 444543 3468888888885 4566654
No 40
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=1.4e-15 Score=121.70 Aligned_cols=146 Identities=24% Similarity=0.214 Sum_probs=120.2
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEe
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLEL 78 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l 78 (219)
+++|++|++++|.++.++.. +.+++|++|++++|.+ +.+|..+..+++|++|++++|.+. +| ..+..+++|++|++
T Consensus 54 l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp CTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence 47899999999999998774 7899999999999854 578888899999999999999987 44 67899999999999
Q ss_pred cCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCe
Q 027793 79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPV 153 (219)
Q Consensus 79 ~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~ 153 (219)
++|.++.+|.. +..+++|+.|++++|. ++.+|.. +++|+.|++++| .++.+|..+... ..++
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~-----------~~L~ 198 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGS-----------HLLP 198 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-----------CCCS
T ss_pred CCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccChhhccc-----------ccCC
Confidence 99999988764 5789999999999964 5667653 478999999985 678888766544 1445
Q ss_pred EEEEcCCc
Q 027793 154 MFKFVNCV 161 (219)
Q Consensus 154 ~l~~~~c~ 161 (219)
.+.+.+.+
T Consensus 199 ~l~L~~Np 206 (290)
T 1p9a_G 199 FAFLHGNP 206 (290)
T ss_dssp EEECCSCC
T ss_pred eEEeCCCC
Confidence 77777653
No 41
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=2.1e-16 Score=122.72 Aligned_cols=155 Identities=16% Similarity=0.150 Sum_probs=121.4
Q ss_pred CCCccEEEeecCC-CcccCc-cccCCCCCcEEeccC-CCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCC--
Q 027793 1 MELLQEIDLFLSG-IKELPS-SIEHIEGLKCLRLNS-CTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLK-- 74 (219)
Q Consensus 1 l~~L~~L~l~~~~-i~~lp~-~~~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~-- 74 (219)
+++|++|++++|. ++.++. .|..+++|++|++++ |.+.+..+..+..+++|++|++++|.+. +|. +..+++|+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIF 132 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSE
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccc
Confidence 4789999999997 999876 589999999999998 7665555567889999999999999877 665 88888898
Q ss_pred -EEEecCC-cCCccch-hhhCCCCCC-EEeccCCCCCCcCCCCC---CCCCeEeccCCcCCCcCCccccCCCCCccccCC
Q 027793 75 -CLELSGH-NFESLPT-GISQLQRLK-CLHLINCNMIRSLPELP---FCLNYLNTSDCKRLQSLPKISSCLETPSNQTRG 147 (219)
Q Consensus 75 -~L~l~~n-~l~~lp~-~l~~l~~L~-~L~l~~~~~l~~lp~~~---~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~ 147 (219)
+|++++| .++.+|. .+..+++|+ .|++++|. ++.+|... ++|+.|++++|..++.+|...... .
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~-l------- 203 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG-V------- 203 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTT-C-------
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhc-c-------
Confidence 9999999 8998875 478999999 99999865 45777532 589999999986688876543221 1
Q ss_pred CCCCCeEEEEcCCccccccc
Q 027793 148 NSYLPVMFKFVNCVKLHKGT 167 (219)
Q Consensus 148 ~~~~l~~l~~~~c~~l~~~~ 167 (219)
...++.++++++ .++..+
T Consensus 204 -~~~L~~L~l~~N-~l~~l~ 221 (239)
T 2xwt_C 204 -YSGPSLLDVSQT-SVTALP 221 (239)
T ss_dssp -SBCCSEEECTTC-CCCCCC
T ss_pred -ccCCcEEECCCC-ccccCC
Confidence 014558888775 555544
No 42
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=4.2e-16 Score=118.56 Aligned_cols=130 Identities=25% Similarity=0.330 Sum_probs=106.9
Q ss_pred CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l 78 (219)
++|++|++++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +| ..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 5799999999999998775 789999999999999776555556789999999999999876 44 44789999999999
Q ss_pred cCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCCCcCC
Q 027793 79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLP 132 (219)
Q Consensus 79 ~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l~~lp 132 (219)
++|.++.++.. +..+++|++|++++|.. +.+|.. +++|++|++++|+.....|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 99999977764 68899999999999754 455542 4789999999986555443
No 43
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=2.5e-16 Score=127.05 Aligned_cols=109 Identities=22% Similarity=0.215 Sum_probs=50.0
Q ss_pred CCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc----c--cccCCCCCCCCEEEecCCcCCccchh----hhCC
Q 027793 24 IEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL----I--LSGLSSLSSLKCLELSGHNFESLPTG----ISQL 93 (219)
Q Consensus 24 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~----~--p~~~~~l~~L~~L~l~~n~l~~lp~~----l~~l 93 (219)
+++|++|++++|.+.+..+..++.+++|++|++++|.+. + +..+..+++|++|++++|.++.++.. +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 444455555444443333444445555555555555432 1 11223455555555555555443331 2445
Q ss_pred CCCCEEeccCCCCCCcCCCC------CCCCCeEeccCCcCCCcCCc
Q 027793 94 QRLKCLHLINCNMIRSLPEL------PFCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 94 ~~L~~L~l~~~~~l~~lp~~------~~~L~~L~l~~~~~l~~lp~ 133 (219)
++|++|++++|......|.. +++|++|++++| .++.+|.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~ 268 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPK 268 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCS
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhh
Confidence 55555555554433332321 135555555553 3444444
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.65 E-value=8.4e-16 Score=132.02 Aligned_cols=169 Identities=14% Similarity=0.111 Sum_probs=115.1
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc----ccccCCCCCCCCEEEe
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL----ILSGLSSLSSLKCLEL 78 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~L~l 78 (219)
+|+.|++++|.+..++. ...+++|++|++++|.+.+..|..++.+++|++|++++|.+. +|..+..+++|++|++
T Consensus 303 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred ceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 35666666666555431 257788888888888777777888888888888888888875 4466788888888888
Q ss_pred cCCcCCc-cchh-hhCCCCCCEEeccCCCCCCcCCCCC-CCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEE
Q 027793 79 SGHNFES-LPTG-ISQLQRLKCLHLINCNMIRSLPELP-FCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMF 155 (219)
Q Consensus 79 ~~n~l~~-lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~-~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l 155 (219)
++|.++. +|.. +..+++|++|++++|...+.+|..+ ++|+.|++++| .++.+|..+..+ + .++.+
T Consensus 382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l--~---------~L~~L 449 (520)
T 2z7x_B 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKL--E---------ALQEL 449 (520)
T ss_dssp CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGC--T---------TCCEE
T ss_pred CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcC--C---------CCCEE
Confidence 8888885 7764 6777888888888877666666554 58888888885 566777655533 1 34466
Q ss_pred EEcCCcccccccccchhHhHHHHHhhhCCCc
Q 027793 156 KFVNCVKLHKGTERNFFANFQRRVHNALPGI 186 (219)
Q Consensus 156 ~~~~c~~l~~~~~~~~~~~~~~~~~~~lp~~ 186 (219)
+++++ .++..+.. .+..+..+...++.++
T Consensus 450 ~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 450 NVASN-QLKSVPDG-IFDRLTSLQKIWLHTN 478 (520)
T ss_dssp ECCSS-CCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred ECCCC-cCCccCHH-HhccCCcccEEECcCC
Confidence 66665 45444432 2333333444444444
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.65 E-value=1.4e-15 Score=126.24 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=65.0
Q ss_pred CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l 78 (219)
+++++|+++++.++.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .|..++.+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 4455566666655555554 455556666666655444433445555566666666655544 2334555555666666
Q ss_pred cCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCC
Q 027793 79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDC 125 (219)
Q Consensus 79 ~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~ 125 (219)
++|.++.+|.. +.++++|++|++++|......|.. +++|++|++++|
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence 66555555543 355555666666554332222221 245555555553
No 46
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=6.2e-15 Score=113.32 Aligned_cols=125 Identities=19% Similarity=0.279 Sum_probs=107.3
Q ss_pred CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccc-cCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILS-GLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~-~~~~l~~L~~L~l 78 (219)
+++++|++++|.|+.++. .|..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +|. .+..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 478999999999999876 5899999999999999887777889999999999999999987 554 4688999999999
Q ss_pred cCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcC
Q 027793 79 SGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKR 127 (219)
Q Consensus 79 ~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~ 127 (219)
++|.++.+ |..+..+++|+.|++++|.. +.++. . +++|+.|++++|+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcC-CEECHHHHhCCCCCCEEEeCCCCc
Confidence 99999966 56789999999999999654 44543 2 46899999998753
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.65 E-value=8e-16 Score=133.54 Aligned_cols=151 Identities=17% Similarity=0.111 Sum_probs=104.1
Q ss_pred cCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc----ccccCCCCCCCCEEEecCCcCCc-cchh-hhCCCC
Q 027793 22 EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL----ILSGLSSLSSLKCLELSGHNFES-LPTG-ISQLQR 95 (219)
Q Consensus 22 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~L~l~~n~l~~-lp~~-l~~l~~ 95 (219)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +|..+..+++|++|++++|.++. +|.. +..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 56788888888888777777888888888888888888765 34567888888888888888875 7754 567788
Q ss_pred CCEEeccCCCCCCcCCCCC-CCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEcCCcccccccccchhHh
Q 027793 96 LKCLHLINCNMIRSLPELP-FCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFAN 174 (219)
Q Consensus 96 L~~L~l~~~~~l~~lp~~~-~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~~ 174 (219)
|+.|++++|...+.+|..+ ++|+.|++++| .++.+|..+..+ + .++.++++++ .++..+.. .+..
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l--~---------~L~~L~L~~N-~l~~l~~~-~~~~ 495 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHL--Q---------ALQELNVASN-QLKSVPDG-VFDR 495 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSS--C---------CCSEEECCSS-CCCCCCTT-STTT
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCC--C---------CCCEEECCCC-CCCCCCHH-HHhc
Confidence 8888888877666666655 58888888875 677777665533 1 3346666554 44444432 2333
Q ss_pred HHHHHhhhCCCc
Q 027793 175 FQRRVHNALPGI 186 (219)
Q Consensus 175 ~~~~~~~~lp~~ 186 (219)
+..+...++.++
T Consensus 496 l~~L~~L~l~~N 507 (562)
T 3a79_B 496 LTSLQYIWLHDN 507 (562)
T ss_dssp CTTCCCEECCSC
T ss_pred CCCCCEEEecCC
Confidence 333444444444
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.65 E-value=1.4e-15 Score=123.76 Aligned_cols=103 Identities=24% Similarity=0.314 Sum_probs=77.9
Q ss_pred CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~ 79 (219)
+++++|++++|.++++++ .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +|..+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 467888888888888654 5888888888888888776666778888888888888888765 554443 677888888
Q ss_pred CCcCCccch-hhhCCCCCCEEeccCCCC
Q 027793 80 GHNFESLPT-GISQLQRLKCLHLINCNM 106 (219)
Q Consensus 80 ~n~l~~lp~-~l~~l~~L~~L~l~~~~~ 106 (219)
+|.++.+|. .+..+++|+.|++++|..
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCcc
Confidence 877776654 467777888888877654
No 49
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.65 E-value=4e-16 Score=136.31 Aligned_cols=151 Identities=19% Similarity=0.222 Sum_probs=126.1
Q ss_pred CCCccEEEeecCCCcccCc--cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc---ccccCCCCCCCCE
Q 027793 1 MELLQEIDLFLSGIKELPS--SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLSSLKC 75 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L~~ 75 (219)
+++|++|++++|.+.++++ .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .|..++.+++|+.
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 477 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCE
Confidence 4789999999999998654 5889999999999999888888889999999999999999876 5778999999999
Q ss_pred EEecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCC
Q 027793 76 LELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYL 151 (219)
Q Consensus 76 L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~ 151 (219)
|++++|.++.+ |..+..+++|++|++++|+..+..|.. +++|+.|++++|. ++.+|..+... +. .
T Consensus 478 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l--~~--------~ 546 (606)
T 3vq2_A 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHF--PK--------S 546 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGS--CT--------T
T ss_pred EECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhh--cc--------c
Confidence 99999999855 667899999999999998766655654 4689999999974 77888875544 10 2
Q ss_pred CeEEEEcCCcc
Q 027793 152 PVMFKFVNCVK 162 (219)
Q Consensus 152 l~~l~~~~c~~ 162 (219)
++.+++++++-
T Consensus 547 L~~l~l~~N~~ 557 (606)
T 3vq2_A 547 LAFFNLTNNSV 557 (606)
T ss_dssp CCEEECCSCCC
T ss_pred CcEEEccCCCc
Confidence 55888888643
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=2.4e-15 Score=131.61 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=68.7
Q ss_pred CCCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cccc-CCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSG-LSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~-~~~l~~L~~L~ 77 (219)
+++|++|++++|.++.+++ .|+.+++|++|++++|.+.+..|..++.+++|++|++++|.+. +|.. ++.+++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 3567777777777777554 5677777777777777665555556667777777777777655 4433 46667777777
Q ss_pred ecCCcCCccc-hhhhCCCCCCEEeccCCC
Q 027793 78 LSGHNFESLP-TGISQLQRLKCLHLINCN 105 (219)
Q Consensus 78 l~~n~l~~lp-~~l~~l~~L~~L~l~~~~ 105 (219)
+++|.++.++ ..+..+++|++|++++|.
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 7777666443 346666666666666653
No 51
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.64 E-value=2.1e-15 Score=125.13 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=96.5
Q ss_pred CCCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cccc-CCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSG-LSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~-~~~l~~L~~L~ 77 (219)
+++|++|++++|.+++++. .+..+++|++|++++|.+.+..|..++.+++|++|++++|.+. +|.. +..+++|++|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 4789999999999999765 6889999999999999877777777889999999999999876 5554 58899999999
Q ss_pred ecCCcCCccc-hhhhCCCCCCEEeccCCCCCCcCC-CCCCCCCeEeccC
Q 027793 78 LSGHNFESLP-TGISQLQRLKCLHLINCNMIRSLP-ELPFCLNYLNTSD 124 (219)
Q Consensus 78 l~~n~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp-~~~~~L~~L~l~~ 124 (219)
+++|.++.++ ..+..+++|++|++++|... .++ ..+++|+.|++++
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSY 195 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCCGGGCTTCSEEECCS
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCC-ccccccccccceeeccc
Confidence 9999998664 46888999999999986543 332 2234444444443
No 52
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=4.2e-16 Score=112.43 Aligned_cols=119 Identities=28% Similarity=0.344 Sum_probs=88.3
Q ss_pred CCccEEEeecCCCc--ccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793 2 ELLQEIDLFLSGIK--ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE 77 (219)
Q Consensus 2 ~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~ 77 (219)
++|++|++++|.++ .+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+. +|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 46788888888887 5777778888888888888865544 56778888888888888765 555566678888888
Q ss_pred ecCCcCCccc--hhhhCCCCCCEEeccCCCCCCcCCC----C---CCCCCeEecc
Q 027793 78 LSGHNFESLP--TGISQLQRLKCLHLINCNMIRSLPE----L---PFCLNYLNTS 123 (219)
Q Consensus 78 l~~n~l~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~----~---~~~L~~L~l~ 123 (219)
+++|.++.++ ..+..+++|++|++++|. +..+|. . +++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 8888888654 677888888888888864 444544 1 3677777765
No 53
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=4.5e-15 Score=118.79 Aligned_cols=118 Identities=28% Similarity=0.298 Sum_probs=64.4
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCCc
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN 82 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n~ 82 (219)
+|++|++++|.++.++. +..+++|++|++++|.+.+ ++. +..+++|++|++++|.+..+..+..+++|++|++++|.
T Consensus 47 ~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 123 (291)
T ss_dssp TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSC
T ss_pred cccEEEccCCCcccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCc
Confidence 45666666666666543 5556666666666664433 332 55666666666666655533345556666666666666
Q ss_pred CCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCC
Q 027793 83 FESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDC 125 (219)
Q Consensus 83 l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~ 125 (219)
++.++ .+..+++|+.|++++|. ++.++. .+++|++|++++|
T Consensus 124 i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 124 ISDIN-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp CCCCG-GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS
T ss_pred CCCCh-hhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCC
Confidence 55543 45555556666665543 222321 1245555555553
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.64 E-value=1.3e-15 Score=133.19 Aligned_cols=129 Identities=28% Similarity=0.309 Sum_probs=107.5
Q ss_pred CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l 78 (219)
+++++|++++|.|+.+|+ .|..+++|++|++++|.+.+..|.+|.++++|++|++++|.+. +| ..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 368999999999999876 5999999999999999776666667899999999999999876 44 56899999999999
Q ss_pred cCCcCCccch-hhhCCCCCCEEeccCCCCCC-cCCCC---CCCCCeEeccCCcCCCcC
Q 027793 79 SGHNFESLPT-GISQLQRLKCLHLINCNMIR-SLPEL---PFCLNYLNTSDCKRLQSL 131 (219)
Q Consensus 79 ~~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~-~lp~~---~~~L~~L~l~~~~~l~~l 131 (219)
++|.++.+|. .++++++|++|++++|.... .+|.. +++|++|++++|. ++.+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 188 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSI 188 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEE
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccc
Confidence 9999998875 58999999999999975433 34443 4789999999864 4444
No 55
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=2.1e-14 Score=110.96 Aligned_cols=126 Identities=23% Similarity=0.188 Sum_probs=107.0
Q ss_pred CCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l 78 (219)
++|++|++++|.++.+ |..+..+++|++|++++|.+....+..+..+++|++|++++|.+. ++ ..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 5799999999999996 556899999999999999765544456789999999999999887 44 45789999999999
Q ss_pred cCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCC
Q 027793 79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRL 128 (219)
Q Consensus 79 ~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l 128 (219)
++|.++.+|..+..+++|++|++++|. +..+|.. +++|+.|++++|+.-
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 999999999999999999999999964 5566632 478999999997643
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.63 E-value=1.1e-15 Score=124.10 Aligned_cols=122 Identities=21% Similarity=0.298 Sum_probs=83.1
Q ss_pred CCCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~ 77 (219)
+++|++|++++|.++++ |..+..+++|++|++++|.+ +.+|..+. ++|++|++++|.+. .+..+..+++|++|+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE 151 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC-CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEE
Confidence 46789999999988886 66788889999999988854 45565443 67777777777665 234466677777777
Q ss_pred ecCCcCC---ccchhhhCCCCCCEEeccCCCCCCcCCCC-CCCCCeEeccCCc
Q 027793 78 LSGHNFE---SLPTGISQLQRLKCLHLINCNMIRSLPEL-PFCLNYLNTSDCK 126 (219)
Q Consensus 78 l~~n~l~---~lp~~l~~l~~L~~L~l~~~~~l~~lp~~-~~~L~~L~l~~~~ 126 (219)
+++|.++ ..+..+..+++|++|++++|. ++.+|.. .++|++|++++|.
T Consensus 152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~ 203 (330)
T 1xku_A 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNK 203 (330)
T ss_dssp CCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSC
T ss_pred CCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCc
Confidence 7777765 334556667777777777643 3445543 2566666666653
No 57
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.63 E-value=3.9e-15 Score=131.16 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=62.3
Q ss_pred CccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCC--------CCCCcEEeccccccc-ccccCC--CC
Q 027793 3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCN--------LKKLQKLCLSQCRCL-ILSGLS--SL 70 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~--------l~~L~~L~l~~~~~~-~p~~~~--~l 70 (219)
+|++|++++|.++.+|.. +..+++|++|++++|.+. .+|..+.. +++|++|++++|.+. +|..+. .+
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l 512 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTC
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccC
Confidence 444555555555544443 233455555555555333 33332211 115555555555544 444443 55
Q ss_pred CCCCEEEecCCcCCccchhhhCCCCCCEEecc------CCCCCCcCCCC---CCCCCeEeccCCcCCCcCCcc
Q 027793 71 SSLKCLELSGHNFESLPTGISQLQRLKCLHLI------NCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI 134 (219)
Q Consensus 71 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~------~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~ 134 (219)
++|+.|++++|.++.+|..+..+++|+.|+++ +|+..+.+|.. +++|+.|++++|. ++.+|..
T Consensus 513 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~ 584 (636)
T 4eco_A 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK 584 (636)
T ss_dssp TTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC
T ss_pred CCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh
Confidence 55555555555555555555555555555553 23334444433 2455555555543 2555543
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.62 E-value=2.7e-15 Score=122.00 Aligned_cols=120 Identities=21% Similarity=0.339 Sum_probs=79.6
Q ss_pred CCCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~ 77 (219)
+++|++|++++|.++.+ |..+..+++|++|++++|.+ ..+|..+. ++|++|++++|.+. +| ..+..+++|+.|+
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence 46788899998888886 55688888899999888854 45665544 67888888887765 33 3467777788888
Q ss_pred ecCCcCC---ccchhhhCCCCCCEEeccCCCCCCcCCCC-CCCCCeEeccCC
Q 027793 78 LSGHNFE---SLPTGISQLQRLKCLHLINCNMIRSLPEL-PFCLNYLNTSDC 125 (219)
Q Consensus 78 l~~n~l~---~lp~~l~~l~~L~~L~l~~~~~l~~lp~~-~~~L~~L~l~~~ 125 (219)
+++|.++ ..+..+..+ +|+.|++++|. ++.+|.. .++|++|++++|
T Consensus 154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n 203 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHLDHN 203 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBCCSS
T ss_pred CCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEECCCC
Confidence 8777765 234445554 66666666643 3334432 245555555554
No 59
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=2.1e-14 Score=110.29 Aligned_cols=129 Identities=15% Similarity=0.137 Sum_probs=108.2
Q ss_pred CCccEEEeecCCCcccCc--cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793 2 ELLQEIDLFLSGIKELPS--SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE 77 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~ 77 (219)
..+++|++++|.++.++. .|..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+..+..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 357899999999999743 3889999999999999777666668999999999999999987 445689999999999
Q ss_pred ecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCc
Q 027793 78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQS 130 (219)
Q Consensus 78 l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~ 130 (219)
+++|.++.+ |..+..+++|+.|++++|......|.. +++|+.|++++|+.-..
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999999966 677899999999999997655444554 46899999999765433
No 60
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=3e-15 Score=130.99 Aligned_cols=129 Identities=19% Similarity=0.241 Sum_probs=101.5
Q ss_pred CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l 78 (219)
.+++.++++++.+..+|.. +..+++|++|++++|.+.+..|..++.+++|++|++++|.+. .|..++.+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 5688899999888888876 677889999999988776666668888999999999998876 4456788899999999
Q ss_pred cCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcC
Q 027793 79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSL 131 (219)
Q Consensus 79 ~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~l 131 (219)
++|.++.+|.. ++++++|++|++++|......|.. +++|++|++++|. ++.+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 186 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHV 186 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCc
Confidence 99998888765 488899999999987655444433 3678888888863 4443
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=8.3e-16 Score=124.13 Aligned_cols=152 Identities=19% Similarity=0.163 Sum_probs=115.6
Q ss_pred CCCccEEEeecCCCcc-cCccc--cCCCCCcEEeccCCCCCCCCccccCCC-----CCCcEEeccccccc--ccccCCCC
Q 027793 1 MELLQEIDLFLSGIKE-LPSSI--EHIEGLKCLRLNSCTKLGFLPESLCNL-----KKLQKLCLSQCRCL--ILSGLSSL 70 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~-lp~~~--~~l~~L~~L~l~~~~~~~~~p~~~~~l-----~~L~~L~l~~~~~~--~p~~~~~l 70 (219)
+++|++|++++|.+++ +|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+. .|..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4689999999999986 78775 8899999999999977666 7777766 89999999999987 44788999
Q ss_pred CCCCEEEecCCcCCc---cchhh--hCCCCCCEEeccCCCCCCcCC---C----CCCCCCeEeccCCcCCCcCC-cc-cc
Q 027793 71 SSLKCLELSGHNFES---LPTGI--SQLQRLKCLHLINCNMIRSLP---E----LPFCLNYLNTSDCKRLQSLP-KI-SS 136 (219)
Q Consensus 71 ~~L~~L~l~~n~l~~---lp~~l--~~l~~L~~L~l~~~~~l~~lp---~----~~~~L~~L~l~~~~~l~~lp-~~-~~ 136 (219)
++|++|++++|++.. +|..+ ..+++|++|++++|.. +.++ . .+++|++|++++|. ++..+ .. +.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 250 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-ETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCD 250 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC-CCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC-cchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhh
Confidence 999999999999763 45555 8899999999999754 4322 1 23799999999975 44433 21 11
Q ss_pred CCCCCccccCCCCCCCeEEEEcCCccccccc
Q 027793 137 CLETPSNQTRGNSYLPVMFKFVNCVKLHKGT 167 (219)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~ 167 (219)
.+ ..++.++++++ .++..+
T Consensus 251 ~l-----------~~L~~L~Ls~N-~l~~ip 269 (312)
T 1wwl_A 251 WP-----------SQLNSLNLSFT-GLKQVP 269 (312)
T ss_dssp CC-----------TTCCEEECTTS-CCSSCC
T ss_pred hc-----------CCCCEEECCCC-ccChhh
Confidence 11 15568888887 455544
No 62
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.62 E-value=2.6e-15 Score=131.13 Aligned_cols=125 Identities=25% Similarity=0.245 Sum_probs=76.5
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--cc-ccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--IL-SGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p-~~~~~l~~L~~L~l 78 (219)
++|++|++++|.++++|..+..+++|++|++++|.+.+..|..+..+++|++|++++|... +| ..+..+++|++|++
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 5677777777777777777777777777777777655555556666666777776666543 22 23556666666666
Q ss_pred cCCcCCcc---chhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCc
Q 027793 79 SGHNFESL---PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCK 126 (219)
Q Consensus 79 ~~n~l~~l---p~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~ 126 (219)
++|.++.+ +..+..+++|++|++++|......|.. +++|++|++++|.
T Consensus 358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 66666533 445566666666666665433333322 2456666665543
No 63
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=2.3e-15 Score=120.44 Aligned_cols=143 Identities=21% Similarity=0.232 Sum_probs=116.8
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecC
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~ 80 (219)
+++|++|++++|.+++++. +..+++|++|++++|.+.+ +| .+..+++|++|++++|.+.....+..+++|+.|++++
T Consensus 67 l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGN 143 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccC
Confidence 4789999999999999887 9999999999999996544 44 5889999999999999987446788899999999999
Q ss_pred CcCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEc
Q 027793 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFV 158 (219)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~ 158 (219)
|.++.+ ..+..+++|+.|++++|.. ..++. .+++|++|++++| .++.+|. +..+ ..++.++++
T Consensus 144 n~l~~~-~~l~~l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~L~~N-~i~~l~~-l~~l-----------~~L~~L~l~ 208 (291)
T 1h6t_A 144 NKITDI-TVLSRLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLYLSKN-HISDLRA-LAGL-----------KNLDVLELF 208 (291)
T ss_dssp SCCCCC-GGGGGCTTCSEEECCSSCC-CCCGGGTTCTTCCEEECCSS-CCCBCGG-GTTC-----------TTCSEEEEE
T ss_pred CcCCcc-hhhccCCCCCEEEccCCcc-ccchhhcCCCccCEEECCCC-cCCCChh-hccC-----------CCCCEEECc
Confidence 999988 4789999999999999754 44443 3479999999996 6777764 2222 155688887
Q ss_pred CCc
Q 027793 159 NCV 161 (219)
Q Consensus 159 ~c~ 161 (219)
+++
T Consensus 209 ~n~ 211 (291)
T 1h6t_A 209 SQE 211 (291)
T ss_dssp EEE
T ss_pred CCc
Confidence 763
No 64
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.62 E-value=6.3e-15 Score=120.25 Aligned_cols=126 Identities=23% Similarity=0.328 Sum_probs=96.0
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCC
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH 81 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n 81 (219)
++|++|+++++.+..++. +..+++|++|++++|.+. .++. +..+++|++|++++|.+...+.+..+++|++|++++|
T Consensus 44 ~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED 120 (347)
T ss_dssp TTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTS
T ss_pred ccccEEEEeCCccccchh-hhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCC
Confidence 578888998888888875 788888999999888544 4444 7888889999998887764456888888888888888
Q ss_pred cCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCC
Q 027793 82 NFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLP 132 (219)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp 132 (219)
.++.++. +..+++|+.|++++|.....++. .+++|++|++++|. +..++
T Consensus 121 ~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~ 171 (347)
T 4fmz_A 121 NISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVT 171 (347)
T ss_dssp CCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCG
T ss_pred cccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCch
Confidence 8887775 77888888888888766665553 24677777777753 44443
No 65
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.62 E-value=6.5e-15 Score=128.66 Aligned_cols=104 Identities=25% Similarity=0.241 Sum_probs=58.3
Q ss_pred CCccEEEeecCCCccc---CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--cc-ccCCCCCCCCE
Q 027793 2 ELLQEIDLFLSGIKEL---PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--IL-SGLSSLSSLKC 75 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p-~~~~~l~~L~~ 75 (219)
++|++|++++|.++.+ +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+ ..+..+++|+.
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 4566666666666653 444666666666666666555555555666666666666666543 12 22455555555
Q ss_pred EEecCCcCCc-cchhhhCCCCCCEEeccCCC
Q 027793 76 LELSGHNFES-LPTGISQLQRLKCLHLINCN 105 (219)
Q Consensus 76 L~l~~n~l~~-lp~~l~~l~~L~~L~l~~~~ 105 (219)
|++++|.++. .|..+..+++|++|++++|.
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 5555555542 23344555555555555544
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.62 E-value=1.7e-15 Score=130.86 Aligned_cols=136 Identities=21% Similarity=0.219 Sum_probs=108.7
Q ss_pred CCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l 78 (219)
++|++|++++|.++++ |..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .|..++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 4789999999999886 456889999999999999777777778889999999999999876 3445889999999999
Q ss_pred cCCcCCc--cchhhhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcCCCcCCccccC
Q 027793 79 SGHNFES--LPTGISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPKISSC 137 (219)
Q Consensus 79 ~~n~l~~--lp~~l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~l~~lp~~~~~ 137 (219)
++|.++. .|..++++++|++|++++|...+.+|. . +++|++|++++|..-...|..+..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 9999874 466788899999999999876776663 2 468889999887654445655543
No 67
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.62 E-value=1.1e-14 Score=123.94 Aligned_cols=130 Identities=25% Similarity=0.268 Sum_probs=96.8
Q ss_pred CCccEEEeecCCCcccC-ccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l 78 (219)
+++++|++++|.++.++ ..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +| ..+..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 46788888888888864 45888888888888888776666778888888888888888766 44 34678888888888
Q ss_pred cCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCC
Q 027793 79 SGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLP 132 (219)
Q Consensus 79 ~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp 132 (219)
++|.++.+ +..+..+++|+.|++++|......+.. +++|++|++++| .++.+|
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~ 168 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIP 168 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccC
Confidence 88888744 557788888888888886544333322 357788888775 344444
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=4e-15 Score=128.88 Aligned_cols=123 Identities=24% Similarity=0.351 Sum_probs=61.6
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCc-cccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEec
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~ 79 (219)
+|++|++++|.+..+|..+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+. .|..+..+++|++|+++
T Consensus 374 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 453 (570)
T 2z63_A 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453 (570)
T ss_dssp CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred ccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECc
Confidence 4444444444444444444445555555555544333322 23445555555555555443 34445555556666666
Q ss_pred CCcCC--ccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCC
Q 027793 80 GHNFE--SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDC 125 (219)
Q Consensus 80 ~n~l~--~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~ 125 (219)
+|.++ .+|..+..+++|+.|++++|...+..|.. +++|++|++++|
T Consensus 454 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 55554 35555555566666666655443333432 245566666554
No 69
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.61 E-value=6.1e-15 Score=124.51 Aligned_cols=163 Identities=17% Similarity=0.095 Sum_probs=108.6
Q ss_pred CCccEEEeecCCCccc----------C-cccc--CCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--cccc
Q 027793 2 ELLQEIDLFLSGIKEL----------P-SSIE--HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSG 66 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~l----------p-~~~~--~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~ 66 (219)
++|+.|++++|.+... . ..+. ..++|++|++++|.+.+..|..+..+++|++|++++|.+. .|..
T Consensus 239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 318 (455)
T 3v47_A 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318 (455)
T ss_dssp CCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred cceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH
Confidence 5678888887643321 1 1122 2357888888888777777777888888888888888876 4567
Q ss_pred CCCCCCCCEEEecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccc-cCCCCC
Q 027793 67 LSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKIS-SCLETP 141 (219)
Q Consensus 67 ~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~-~~~~~~ 141 (219)
+..+++|++|++++|.++.+ |..+..+++|++|++++|......|.. +++|++|++++| .++.+|... ..+
T Consensus 319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l--- 394 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRL--- 394 (455)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC---
T ss_pred hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccC---
Confidence 88888888888888888755 566788888888888887654444543 367888888885 566666533 222
Q ss_pred ccccCCCCCCCeEEEEcCCcccccccccchhHhHH
Q 027793 142 SNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQ 176 (219)
Q Consensus 142 ~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~~~~ 176 (219)
..++.+++++++---..+...++..|.
T Consensus 395 --------~~L~~L~l~~N~l~~~~~~~~~l~~~l 421 (455)
T 3v47_A 395 --------TSLQKIWLHTNPWDCSCPRIDYLSRWL 421 (455)
T ss_dssp --------TTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred --------CcccEEEccCCCcccCCCcchHHHHHH
Confidence 145578887764333333234444443
No 70
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.61 E-value=5.8e-15 Score=124.63 Aligned_cols=77 Identities=18% Similarity=0.136 Sum_probs=38.6
Q ss_pred CCCcEEeccccccc--ccccCCCCCCCCEEEecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEec
Q 027793 49 KKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNT 122 (219)
Q Consensus 49 ~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l 122 (219)
++|++|++++|.+. .|..+..+++|++|++++|.++.+ |..+..+++|++|++++|...+..|.. +++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 34555555555544 344455555555555555555533 334555555555555554332222221 345555555
Q ss_pred cCC
Q 027793 123 SDC 125 (219)
Q Consensus 123 ~~~ 125 (219)
++|
T Consensus 355 s~N 357 (455)
T 3v47_A 355 SYN 357 (455)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.61 E-value=2.7e-15 Score=129.51 Aligned_cols=122 Identities=25% Similarity=0.326 Sum_probs=82.8
Q ss_pred CCccEEEeecCCCcccCccc-cCCCCCcEEeccCCCCCCCCcc---ccCCCCCCcEEeccccccc-cc---ccCCCCCCC
Q 027793 2 ELLQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPE---SLCNLKKLQKLCLSQCRCL-IL---SGLSSLSSL 73 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~~p~---~~~~l~~L~~L~l~~~~~~-~p---~~~~~l~~L 73 (219)
.+|+.|++++|.++.+|..+ ..+++|++|++++|.+.+..|. .++.+++|++|++++|.+. ++ ..+..+++|
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 46788888888888888765 4688888888888876655532 3567778888888888765 22 346677777
Q ss_pred CEEEecCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCC-CCCCCeEeccC
Q 027793 74 KCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL-PFCLNYLNTSD 124 (219)
Q Consensus 74 ~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~-~~~L~~L~l~~ 124 (219)
++|++++|.++.+|..+..+++|++|++++|. ++.+|.. +++|+.|++++
T Consensus 390 ~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~ 440 (549)
T 2z81_A 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSN 440 (549)
T ss_dssp CEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCS
T ss_pred CEEECCCCCCccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCC
Confidence 88888877777777777777777777777754 3444432 23444444444
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=7.5e-16 Score=124.64 Aligned_cols=171 Identities=16% Similarity=0.044 Sum_probs=103.2
Q ss_pred CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccc--------------
Q 027793 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILS-------------- 65 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~-------------- 65 (219)
++|++|++++|.++.+++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. ++.
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l 111 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCcc
Confidence 478999999999999764 58899999999999987655443 788899999999988765 110
Q ss_pred ---cCCCCCCCCEEEecCCcCCccch-hhhCCCCCCEEeccCCCCCCcCCC----CCCCCCeEeccCCcCCCcCCccccC
Q 027793 66 ---GLSSLSSLKCLELSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKRLQSLPKISSC 137 (219)
Q Consensus 66 ---~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~----~~~~L~~L~l~~~~~l~~lp~~~~~ 137 (219)
....+++|++|++++|.++.++. .+..+++|++|++++|......+. .+++|++|++++| .++.++.....
T Consensus 112 ~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~l 190 (317)
T 3o53_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVF 190 (317)
T ss_dssp SEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCC
T ss_pred CCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccccccccc
Confidence 01224556666666666664433 455666666666666543332222 1356666666664 34444332211
Q ss_pred CCCCccccCCCCCCCeEEEEcCCcccccccccchhHhHHHHHhhhCCCccccc
Q 027793 138 LETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRK 190 (219)
Q Consensus 138 ~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~~~~~~~~~~lp~~~~~~ 190 (219)
..++.++++++ .++..+.. +..+..+...++.++....
T Consensus 191 ------------~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 191 ------------AKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp ------------TTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSCCCE
T ss_pred ------------ccCCEEECCCC-cCCcchhh--hcccCcccEEECcCCcccc
Confidence 14456667665 44444331 3344455555555554333
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=1.3e-14 Score=114.87 Aligned_cols=107 Identities=23% Similarity=0.270 Sum_probs=88.7
Q ss_pred CCCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~ 77 (219)
+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. + +..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 4689999999999988765 5888999999999998776666677888999999999998876 3 33588889999999
Q ss_pred ecCCcCCc--cchhhhCCCCCCEEeccCCCCC
Q 027793 78 LSGHNFES--LPTGISQLQRLKCLHLINCNMI 107 (219)
Q Consensus 78 l~~n~l~~--lp~~l~~l~~L~~L~l~~~~~l 107 (219)
+++|.++. +|..+..+++|++|++++|...
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 99999875 6888888999999999986543
No 74
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=6.1e-15 Score=110.98 Aligned_cols=123 Identities=21% Similarity=0.191 Sum_probs=100.5
Q ss_pred ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCcc-ccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecC
Q 027793 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~ 80 (219)
-+++++++++++++|..+.. ++++|++++|.+.+..+. .+..+++|++|++++|.+. .|..+..+++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 36889999999999986643 899999999966555443 3889999999999999887 477899999999999999
Q ss_pred CcCCccch-hhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCC
Q 027793 81 HNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRL 128 (219)
Q Consensus 81 n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l 128 (219)
|.++.++. .+..+++|++|++++|...+..|.. +++|++|++++|+.-
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99996654 5788999999999997766555654 468999999887543
No 75
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.61 E-value=5.9e-15 Score=121.52 Aligned_cols=130 Identities=21% Similarity=0.197 Sum_probs=100.1
Q ss_pred CCccEEEeecCCCcccCcc-cc-CCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEE
Q 027793 2 ELLQEIDLFLSGIKELPSS-IE-HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLE 77 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~-~~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~ 77 (219)
+.+++|++++|.|+.++.. +. .+++|++|++++|.+.+..+..+..+++|++|++++|.+. + +..+..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3578888888888887665 55 7888999999888766666667888889999999988876 3 34578888899999
Q ss_pred ecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCCC-------CCCCCeEeccCCcCCCcCCc
Q 027793 78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL-------PFCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 78 l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~-------~~~L~~L~l~~~~~l~~lp~ 133 (219)
+++|.++.+ |..+..+++|+.|++++| .+..+|.. +++|+.|++++| .++.+|.
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~ 180 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPL 180 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCH
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCH
Confidence 999988865 567888889999999885 45556632 468888898885 5666663
No 76
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=1.1e-14 Score=131.96 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=103.4
Q ss_pred CccEEEeecCCCcccCccc-cCCCCCcEEeccCCCCCCCCccccCCC--------CCCcEEeccccccc-ccccCC--CC
Q 027793 3 LLQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESLCNL--------KKLQKLCLSQCRCL-ILSGLS--SL 70 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~~p~~~~~l--------~~L~~L~l~~~~~~-~p~~~~--~l 70 (219)
+|+.|++++|.++.+|..+ ..+++|+.|++++|.+. .+|..+... ++|+.|++++|.+. +|..+. .+
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l 752 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTC
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccC
Confidence 6777777777777777764 46788888888887554 566544332 37888888888766 677766 78
Q ss_pred CCCCEEEecCCcCCccchhhhCCCCCCEEeccC------CCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccCCCCC
Q 027793 71 SSLKCLELSGHNFESLPTGISQLQRLKCLHLIN------CNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETP 141 (219)
Q Consensus 71 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~------~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~ 141 (219)
++|+.|++++|.++.+|..+..+++|+.|++++ |+..+.+|.. +++|+.|++++|.. +.+|..+. .
T Consensus 753 ~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-~--- 827 (876)
T 4ecn_A 753 PYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-P--- 827 (876)
T ss_dssp TTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-S---
T ss_pred CCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-C---
Confidence 888888888888887887888888888888865 4455666654 36788888888654 77776543 1
Q ss_pred ccccCCCCCCCeEEEEcCCcc
Q 027793 142 SNQTRGNSYLPVMFKFVNCVK 162 (219)
Q Consensus 142 ~~~~~~~~~~l~~l~~~~c~~ 162 (219)
.++.+++++|+-
T Consensus 828 ---------~L~~LdLs~N~l 839 (876)
T 4ecn_A 828 ---------QLYILDIADNPN 839 (876)
T ss_dssp ---------SSCEEECCSCTT
T ss_pred ---------CCCEEECCCCCC
Confidence 455788888753
No 77
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=9.2e-15 Score=110.16 Aligned_cols=119 Identities=25% Similarity=0.292 Sum_probs=99.6
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecCCc
Q 027793 5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSGHN 82 (219)
Q Consensus 5 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~n~ 82 (219)
++++++++.++.+|..+. ++|++|++++|.+ ..+|..+..+++|++|++++|.+. .+..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 578899999999998653 6899999999855 577888999999999999999987 44568999999999999999
Q ss_pred CCccch-hhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcC
Q 027793 83 FESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKR 127 (219)
Q Consensus 83 l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~ 127 (219)
++.++. .+..+++|+.|++++|. ++.+|.. +++|+.|++++|+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 997764 68899999999999965 5566642 46899999998754
No 78
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=1.8e-14 Score=113.64 Aligned_cols=123 Identities=21% Similarity=0.264 Sum_probs=98.8
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~ 79 (219)
+++|++|++++|.++++| .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+. +|. +.. ++|++|+++
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l~~-~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNLNG-IPS-ACLSRLFLD 114 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSCCTT-CCC-SSCCEEECC
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCCcCc-ccc-CcccEEEcc
Confidence 367899999999999988 58889999999999986544 454 889999999999999876 443 333 889999999
Q ss_pred CCcCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcC
Q 027793 80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSL 131 (219)
Q Consensus 80 ~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~l 131 (219)
+|.++.++ .+..+++|+.|++++|. ++.++. .+++|+.|++++| .++.+
T Consensus 115 ~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N-~i~~~ 165 (263)
T 1xeu_A 115 NNELRDTD-SLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGN-EITNT 165 (263)
T ss_dssp SSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTS-CCCBC
T ss_pred CCccCCCh-hhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCC-cCcch
Confidence 99998876 58889999999999864 555553 2478999999886 45555
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=1.2e-15 Score=130.59 Aligned_cols=170 Identities=16% Similarity=0.044 Sum_probs=107.2
Q ss_pred CCccEEEeecCCCcccC-ccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccc--------------
Q 027793 2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILS-------------- 65 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~-------------- 65 (219)
++|++|++++|.++.++ ..++.+++|++|++++|.+.+..| +..+++|++|++++|.+. +|.
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 47999999999999976 468999999999999997665544 888999999999998765 211
Q ss_pred ---cCCCCCCCCEEEecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCCCcCCccccC
Q 027793 66 ---GLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPKISSC 137 (219)
Q Consensus 66 ---~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l~~lp~~~~~ 137 (219)
....+++|+.|++++|.++.+ |..++.+++|+.|++++|......|.. +++|+.|++++|. ++.+|.....
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l 190 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVF 190 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCC
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccccccC
Confidence 012345666666666666644 445666677777777776544433322 3567777776643 4444332221
Q ss_pred CCCCccccCCCCCCCeEEEEcCCcccccccccchhHhHHHHHhhhCCCcccc
Q 027793 138 LETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHR 189 (219)
Q Consensus 138 ~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~~~~~~~~~~lp~~~~~ 189 (219)
..++.++++++ .+...+.. +..+..+...++.++...
T Consensus 191 ------------~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 191 ------------AKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp ------------TTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSCCC
T ss_pred ------------CCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCCcCc
Confidence 14556777665 45544332 334445555555554433
No 80
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.59 E-value=1.4e-14 Score=122.93 Aligned_cols=123 Identities=22% Similarity=0.249 Sum_probs=89.2
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecC
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~ 80 (219)
+++|++|++++|.++++| .++.+++|++|++++|.+.+ +| ++.+++|++|++++|.+... .++.+++|++|++++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDT 115 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCC
Confidence 367888888888888887 48888888888888886554 34 77888888888888876622 277788888888888
Q ss_pred CcCCccchhhhCCCCCCEEeccCCCCCCcCC-CCCCCCCeEeccCCcCCCcC
Q 027793 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLP-ELPFCLNYLNTSDCKRLQSL 131 (219)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp-~~~~~L~~L~l~~~~~l~~l 131 (219)
|.++.+| ++.+++|++|++++|.. +.++ ...++|++|++++|..++.+
T Consensus 116 N~l~~l~--~~~l~~L~~L~l~~N~l-~~l~l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 116 NKLTKLD--VSQNPLLTYLNCARNTL-TEIDVSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp SCCSCCC--CTTCTTCCEEECTTSCC-SCCCCTTCTTCCEEECTTCSCCCCC
T ss_pred CcCCeec--CCCCCcCCEEECCCCcc-ceeccccCCcCCEEECCCCCccccc
Confidence 8887765 67778888888887543 3343 22456777777776555554
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=1.6e-14 Score=126.46 Aligned_cols=125 Identities=24% Similarity=0.288 Sum_probs=63.8
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCC
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH 81 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n 81 (219)
++|+.|++++|.++++++ +..+++|+.|++++|.+.+ +| .+..+++|++|++++|.+.....+..+++|+.|++++|
T Consensus 65 ~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN 141 (605)
T ss_dssp TTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSS
T ss_pred CCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCC
Confidence 455555555555555544 5555555555555553322 22 45555555555555555443334555555556666555
Q ss_pred cCCccchhhhCCCCCCEEeccCCCCCCcCC-CCCCCCCeEeccCCcCCCcC
Q 027793 82 NFESLPTGISQLQRLKCLHLINCNMIRSLP-ELPFCLNYLNTSDCKRLQSL 131 (219)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp-~~~~~L~~L~l~~~~~l~~l 131 (219)
.++.+ ..+..+++|+.|++++|......| ..+++|+.|++++| .++.+
T Consensus 142 ~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~i~~l 190 (605)
T 1m9s_A 142 KITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISDL 190 (605)
T ss_dssp CCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBC
T ss_pred ccCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCC-CCCCC
Confidence 55554 345555566666665543322222 11345666666554 34444
No 82
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=5.1e-15 Score=109.77 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=77.3
Q ss_pred CCccEEEeecCCCcccCccccCCC-CCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cccc-CCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIE-GLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSG-LSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~-~~~l~~L~~L~l 78 (219)
.+|++|++++|.++.+|. +..+. +|++|++++|.+.+. ..+..+++|++|++++|.+. +|.. +..+++|++|++
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 456777777777777654 44443 777777777754433 45667777777777777665 4433 366677777777
Q ss_pred cCCcCCccch--hhhCCCCCCEEeccCCCCCCcCCCC-------CCCCCeEeccCCc
Q 027793 79 SGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPEL-------PFCLNYLNTSDCK 126 (219)
Q Consensus 79 ~~n~l~~lp~--~l~~l~~L~~L~l~~~~~l~~lp~~-------~~~L~~L~l~~~~ 126 (219)
++|.++.+|. .+..+++|+.|++++|.. ..+|.. +++|+.|++++|.
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence 7777776665 566777777777777543 345542 3566666666543
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=4.2e-15 Score=121.86 Aligned_cols=133 Identities=15% Similarity=0.169 Sum_probs=93.5
Q ss_pred CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCcc-ccCCCCCCcE-Eeccccccc--ccccCCCCCCCCEE
Q 027793 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQK-LCLSQCRCL--ILSGLSSLSSLKCL 76 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~-L~l~~~~~~--~p~~~~~l~~L~~L 76 (219)
+++++|++++|+|+.+|.. |..+++|++|++++|.+.+.+|. .|.++++++. +.+..|.+. .|..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 4688999999999998874 78899999999999877776654 5677888765 445556655 35678889999999
Q ss_pred EecCCcCCccch-hhhCCCCCCEEeccCCCCCCcCCCC-----CCCCCeEeccCCcCCCcCCccc
Q 027793 77 ELSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL-----PFCLNYLNTSDCKRLQSLPKIS 135 (219)
Q Consensus 77 ~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~-----~~~L~~L~l~~~~~l~~lp~~~ 135 (219)
++++|.++.+|. .+....++..+++.+++.+..+|.. ...++.|++++| .++.+|...
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~ 173 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSA 173 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTS
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhh
Confidence 999998886664 3344556667777666666655532 134666777663 455665443
No 84
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.58 E-value=1.3e-14 Score=128.46 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=109.0
Q ss_pred CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccc-cCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILS-GLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~-~~~~l~~L~~L~l 78 (219)
+++++|++++|.++.+|.. |.++++|++|++++|.+.+..|..++++++|++|++++|.+. +|. .+..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 4789999999999998764 899999999999999888878888899999999999999876 554 5889999999999
Q ss_pred cCCcCCccc-hhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCC
Q 027793 79 SGHNFESLP-TGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLP 132 (219)
Q Consensus 79 ~~n~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp 132 (219)
++|.++.++ ..++++++|++|++++|......|.. +++|++|++++|. ++.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 161 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALK 161 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccC
Confidence 999998776 57899999999999998765555543 4689999999864 44444
No 85
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1.3e-14 Score=126.17 Aligned_cols=116 Identities=18% Similarity=0.145 Sum_probs=93.4
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCC
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGH 81 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n 81 (219)
.|++|++++|.++++|. ++.+++|+.|++++|.+. .+|..++.+++|++|++++|.+. +| .++.+++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 57889999999988887 888999999999988554 78888889999999999999877 66 7888999999999999
Q ss_pred cCCcc--chhhhCCCCCCEEeccCCCCCCcCCCC------CCCCCeEe
Q 027793 82 NFESL--PTGISQLQRLKCLHLINCNMIRSLPEL------PFCLNYLN 121 (219)
Q Consensus 82 ~l~~l--p~~l~~l~~L~~L~l~~~~~l~~lp~~------~~~L~~L~ 121 (219)
.++.+ |..++.+++|+.|++++|+..+..|.. +++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 98876 788888999999999986543333322 35666664
No 86
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=3.7e-16 Score=139.54 Aligned_cols=109 Identities=25% Similarity=0.239 Sum_probs=76.2
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecC
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~ 80 (219)
++|+.|++++|.+..+|..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+. +|..++.+++|++|++++
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC
Confidence 4567777777777777766667777777777777544 66666777777777777777765 666677777777777777
Q ss_pred CcCCccchhhhCCCCCCEEeccCCCCCCcCC
Q 027793 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLP 111 (219)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp 111 (219)
|.++.+|..++.+++|+.|+|++|...+.+|
T Consensus 303 N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 303 NMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp SCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 7777777777777777777777765544333
No 87
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.57 E-value=3.1e-14 Score=120.83 Aligned_cols=122 Identities=19% Similarity=0.135 Sum_probs=101.6
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~ 79 (219)
+++|++|++++|.++++| ++.+++|++|++++|.+.+ ++ ++.+++|++|++++|.+. +| ++.+++|++|+++
T Consensus 63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCA 135 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECT
T ss_pred cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECC
Confidence 478999999999999986 8899999999999997655 44 889999999999999876 43 7889999999999
Q ss_pred CCcCCccchhhhCCCCCCEEeccCCCCCCcCCC-CCCCCCeEeccCCcCCCcCC
Q 027793 80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPE-LPFCLNYLNTSDCKRLQSLP 132 (219)
Q Consensus 80 ~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-~~~~L~~L~l~~~~~l~~lp 132 (219)
+|.++.++ ++.+++|+.|++++|..++.++- .+++|+.|++++| .++.+|
T Consensus 136 ~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l~ 186 (457)
T 3bz5_A 136 RNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELD 186 (457)
T ss_dssp TSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCCC
T ss_pred CCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccceec
Confidence 99998875 77889999999999877776642 3478888888885 466665
No 88
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.57 E-value=1.8e-14 Score=127.54 Aligned_cols=124 Identities=23% Similarity=0.192 Sum_probs=80.5
Q ss_pred CCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~l 78 (219)
++|++|++++|.++++ |..++.+++|++|++++|.+.+..+..++.+++|++|++++|.+. + |..++.+++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 5677777777777774 444677777777777777554433335777777777777777665 3 355677777777777
Q ss_pred cCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCC-----CCCCCCeEeccCC
Q 027793 79 SGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPE-----LPFCLNYLNTSDC 125 (219)
Q Consensus 79 ~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~-----~~~~L~~L~l~~~ 125 (219)
++|.++.. |..++++++|++|++++|......+. ..++|++|++++|
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 77777633 44566777777777777543322221 1246777777665
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=4.9e-15 Score=119.42 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=104.8
Q ss_pred CCCccEEEeecCCCcccC-ccccCCCCCcEEeccCCCCCCC--Cc--cccCCCCCCcEEeccccccc-ccc----cCCCC
Q 027793 1 MELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGF--LP--ESLCNLKKLQKLCLSQCRCL-ILS----GLSSL 70 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~--~p--~~~~~l~~L~~L~l~~~~~~-~p~----~~~~l 70 (219)
+++|++|++++|.+..++ ..++.+++|++|++++|.+.+. ++ ..+..+++|++|++++|.+. ++. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 468999999999999866 4588999999999999976542 22 23468999999999999986 232 24678
Q ss_pred CCCCEEEecCCcCCcc-chhhhCC---CCCCEEeccCCCCCCcCCCC-CCCCCeEeccCCcCCCcCCc
Q 027793 71 SSLKCLELSGHNFESL-PTGISQL---QRLKCLHLINCNMIRSLPEL-PFCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 71 ~~L~~L~l~~n~l~~l-p~~l~~l---~~L~~L~l~~~~~l~~lp~~-~~~L~~L~l~~~~~l~~lp~ 133 (219)
++|++|++++|.++.. |..+..+ ++|++|++++|. ++.+|.. +++|+.|++++| .++.+|.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N-~l~~~~~ 289 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSN-RLNRAPQ 289 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSC-CCCSCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCC-cCCCCch
Confidence 9999999999999865 7777666 699999999965 4578865 479999999996 5666654
No 90
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=1.6e-14 Score=108.64 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=95.9
Q ss_pred CCccEEEeecCCCcccCcc--ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793 2 ELLQEIDLFLSGIKELPSS--IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE 77 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~ 77 (219)
.++++|++++|.++.++.. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+..+..+++|++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 3789999999999998764 899999999999999888888889999999999999999987 455688999999999
Q ss_pred ecCCcCCcc-chhhhCCCCCCEEeccCCCCCCc
Q 027793 78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRS 109 (219)
Q Consensus 78 l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~ 109 (219)
+++|.++.+ |..+..+++|++|++++|.....
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 999999955 77889999999999999876543
No 91
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=4.3e-14 Score=106.48 Aligned_cols=103 Identities=21% Similarity=0.252 Sum_probs=58.4
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecC
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~ 80 (219)
+|++|++++|.++.+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .|..+..+++|++|++++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 455666666666556555555666666666665554444445555666666666666554 233455556666666666
Q ss_pred CcCCccch-hhhCCCCCCEEeccCCC
Q 027793 81 HNFESLPT-GISQLQRLKCLHLINCN 105 (219)
Q Consensus 81 n~l~~lp~-~l~~l~~L~~L~l~~~~ 105 (219)
|.++.+|. .+..+++|+.|++++|.
T Consensus 112 N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 112 NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCeeChhhhhcCccccEEEeCCCC
Confidence 66655544 34555666666666543
No 92
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=9.8e-15 Score=107.28 Aligned_cols=110 Identities=25% Similarity=0.251 Sum_probs=96.2
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc--ccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL--SGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p--~~~~~l~~L~~L~ 77 (219)
+++|++|++++|.++.+ ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+. +| ..+..+++|++|+
T Consensus 48 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp GGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred CCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 36799999999999998 66899999999999999877778877778999999999999887 44 6889999999999
Q ss_pred ecCCcCCccch----hhhCCCCCCEEeccCCCCCCcCCC
Q 027793 78 LSGHNFESLPT----GISQLQRLKCLHLINCNMIRSLPE 112 (219)
Q Consensus 78 l~~n~l~~lp~----~l~~l~~L~~L~l~~~~~l~~lp~ 112 (219)
+++|.++.+|. .+..+++|++|++++|. ...+|.
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 99999998876 78899999999999964 455554
No 93
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.57 E-value=3.3e-14 Score=120.75 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=44.1
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCC
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH 81 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n 81 (219)
++|++|++++|.++++++ ++.+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.....+..+++|+.|++++|
T Consensus 199 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 275 (466)
T ss_dssp TTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred CCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-ch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCC
Confidence 455555555555555433 4445555555555543322 22 34444455555555544431111344444444444444
Q ss_pred cCCccchhhhCCCCCCEEeccC
Q 027793 82 NFESLPTGISQLQRLKCLHLIN 103 (219)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~ 103 (219)
.++.++. +..+++|+.|++++
T Consensus 276 ~l~~~~~-~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 276 QISNISP-LAGLTALTNLELNE 296 (466)
T ss_dssp CCCCCGG-GTTCTTCSEEECCS
T ss_pred ccCcccc-ccCCCccCeEEcCC
Confidence 4443332 33444444444444
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=5.5e-14 Score=122.09 Aligned_cols=117 Identities=25% Similarity=0.354 Sum_probs=79.0
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCC
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGH 81 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n 81 (219)
+++.|++++|+++++|..+. ++|++|++++|.+. .+| ..+++|++|++++|.+. +|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 67778888888777777553 67788888777544 566 34677777777777665 554 443 7777777777
Q ss_pred cCCccchhhhCCCCCCEEeccCCCCCCcCCCCCCCCCeEeccCCcCCCcCCc
Q 027793 82 NFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~~~~l~~lp~ 133 (219)
.++.+|. .+++|+.|++++|. ++.+|..+++|+.|++++| .++.+|.
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N-~L~~lp~ 177 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNN-QLTFLPE 177 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCC
T ss_pred cCCCCCC---cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCC-CCCCcch
Confidence 7777765 56777777777654 4446665567777777764 3555655
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=1.1e-14 Score=127.38 Aligned_cols=147 Identities=23% Similarity=0.234 Sum_probs=117.1
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecC
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~ 80 (219)
|++|+.|++++|.+..+|. +..+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+..++.+..+++|+.|++++
T Consensus 42 L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecC
Confidence 3678999999999999985 8999999999999996655 443 889999999999999988556899999999999999
Q ss_pred CcCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEc
Q 027793 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFV 158 (219)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~ 158 (219)
|.++.++ .+..+++|+.|++++|. +..++. .+++|+.|++++| .+..++. +..+ ..++.|+++
T Consensus 119 N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l-----------~~L~~L~Ls 183 (605)
T 1m9s_A 119 NGISDIN-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN-QISDIVP-LAGL-----------TKLQNLYLS 183 (605)
T ss_dssp SCCCCCG-GGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSS-CCCCCGG-GTTC-----------TTCCEEECC
T ss_pred CCCCCCc-cccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCC-cCCCchh-hccC-----------CCCCEEECc
Confidence 9999876 68899999999999975 444543 3579999999997 4555554 3322 145577777
Q ss_pred CCcccccc
Q 027793 159 NCVKLHKG 166 (219)
Q Consensus 159 ~c~~l~~~ 166 (219)
+| .+...
T Consensus 184 ~N-~i~~l 190 (605)
T 1m9s_A 184 KN-HISDL 190 (605)
T ss_dssp SS-CCCBC
T ss_pred CC-CCCCC
Confidence 76 44443
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=2.3e-14 Score=130.03 Aligned_cols=131 Identities=19% Similarity=0.135 Sum_probs=103.2
Q ss_pred CCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCC-ccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793 2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFL-PESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE 77 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~ 77 (219)
+++++|++++|.|+.+ |..|..+++|++|++++|...+.+ |..+.++++|++|++++|.+. .|..+.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 5789999999999885 556899999999999998666665 677889999999999999876 578888999999999
Q ss_pred ecCCcCCc-cchh--hhCCCCCCEEeccCCCCCCcCCC----CCCCCCeEeccCCcCCCcCC
Q 027793 78 LSGHNFES-LPTG--ISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKRLQSLP 132 (219)
Q Consensus 78 l~~n~l~~-lp~~--l~~l~~L~~L~l~~~~~l~~lp~----~~~~L~~L~l~~~~~l~~lp 132 (219)
+++|.++. +|.. ++++++|++|++++|...+..+. .+++|++|++++|..-...+
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 99998873 5554 78889999999998765543332 24788899988865433333
No 97
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.56 E-value=2.7e-14 Score=116.49 Aligned_cols=166 Identities=14% Similarity=0.181 Sum_probs=124.3
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~ 79 (219)
+++|++|++++|.+++++. +..+++|+++++++|.+.+..+ +..+++|++|++++|.+. ++. +..+++|++|+++
T Consensus 176 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIG 251 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred CCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECC
Confidence 4689999999999998877 8889999999999986554433 778999999999999877 443 8889999999999
Q ss_pred CCcCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEE
Q 027793 80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKF 157 (219)
Q Consensus 80 ~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~ 157 (219)
+|.++.++ .+..+++|+.|++++|. +..++. .+++|+.|++++|......|..+..+ ..++.+++
T Consensus 252 ~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-----------~~L~~L~L 318 (347)
T 4fmz_A 252 TNQISDIN-AVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL-----------TNLTTLFL 318 (347)
T ss_dssp SSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTC-----------TTCSEEEC
T ss_pred CCccCCCh-hHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCcCCCcChhHhhcc-----------ccCCEEEc
Confidence 99998875 68889999999999974 444553 34789999999976444444444433 25568899
Q ss_pred cCCcccccccccchhHhHHHHHhhhCCCcc
Q 027793 158 VNCVKLHKGTERNFFANFQRRVHNALPGIL 187 (219)
Q Consensus 158 ~~c~~l~~~~~~~~~~~~~~~~~~~lp~~~ 187 (219)
++|+ ++..+. +..+..+...++.++.
T Consensus 319 ~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 319 SQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp CSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred cCCc-cccccC---hhhhhccceeehhhhc
Confidence 8885 555433 4455666555555543
No 98
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=124.63 Aligned_cols=134 Identities=18% Similarity=0.084 Sum_probs=93.5
Q ss_pred CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~ 79 (219)
++|++|++++|.++++++ .+..+++|++|++++|.+.+..|..++.+++|++|++++|.+. +|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 467788888888877663 5777888888888887666666777778888888888888766 5554 67888888888
Q ss_pred CCcCCc--cchhhhCCCCCCEEeccCCCCCCcCCCCCCCC--CeEeccCCcC--CCcCCccccC
Q 027793 80 GHNFES--LPTGISQLQRLKCLHLINCNMIRSLPELPFCL--NYLNTSDCKR--LQSLPKISSC 137 (219)
Q Consensus 80 ~n~l~~--lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L--~~L~l~~~~~--l~~lp~~~~~ 137 (219)
+|.++. +|..++++++|++|++++|.........+++| +.|++++|.. ....|..+..
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~ 162 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT
T ss_pred CCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccc
Confidence 888764 56777888888888888765433222233556 7888877655 3444544444
No 99
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=118.13 Aligned_cols=103 Identities=24% Similarity=0.293 Sum_probs=71.1
Q ss_pred CCCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCcc--ccCCCCCCcEEeccccc-cc--ccccCCCCCCCC
Q 027793 1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPE--SLCNLKKLQKLCLSQCR-CL--ILSGLSSLSSLK 74 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~-~~--~p~~~~~l~~L~ 74 (219)
+++|++|++++|.++++|.. ++.+++|++|++++|.+. .+|. .+..+++|++|++++|. .. .+..+..+++|+
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 46788888888888887776 778888888888887554 4444 57778888888888874 32 344566666677
Q ss_pred EEEecCCcCCcc-chhhhCCCCCCEEeccCC
Q 027793 75 CLELSGHNFESL-PTGISQLQRLKCLHLINC 104 (219)
Q Consensus 75 ~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~ 104 (219)
+|++++|.++.+ |..+..+++|++|++++|
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 777776666633 555566666666666554
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=5.4e-16 Score=126.00 Aligned_cols=127 Identities=25% Similarity=0.232 Sum_probs=73.4
Q ss_pred CCccEEEeecCCCcc--cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccc-ccc---ccccCCCCCCCCE
Q 027793 2 ELLQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQC-RCL---ILSGLSSLSSLKC 75 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~-~~~---~p~~~~~l~~L~~ 75 (219)
++|++|++++|.++. ++..+..+++|++|++++|.+.+..+..++.+++|++|++++| .+. ++..+..+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 456666666666553 5555666666666666666554455556666666666666666 232 3444555666666
Q ss_pred EEecCC-cCCc--cchhhhCCC-CCCEEeccCCC-CC--CcCCC---CCCCCCeEeccCCcCC
Q 027793 76 LELSGH-NFES--LPTGISQLQ-RLKCLHLINCN-MI--RSLPE---LPFCLNYLNTSDCKRL 128 (219)
Q Consensus 76 L~l~~n-~l~~--lp~~l~~l~-~L~~L~l~~~~-~l--~~lp~---~~~~L~~L~l~~~~~l 128 (219)
|++++| .++. ++..+..++ +|++|++++|. .+ ..+|. ..++|++|++++|..+
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l 235 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC
Confidence 666666 5652 455566666 66666666653 11 12222 1356666666666533
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=1e-14 Score=120.06 Aligned_cols=126 Identities=19% Similarity=0.189 Sum_probs=104.5
Q ss_pred CCCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~ 77 (219)
+++|++|++++|.|+.++. .|..+++|++|++++|.+....+..+..+++|++|++++|.+. .|..+..+++|+.|+
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 4789999999999999875 4899999999999999776666667889999999999999987 467899999999999
Q ss_pred ecCCcCCccchhh----hCCCCCCEEeccCCCCCCcCCC-C---CCC--CCeEeccCCcC
Q 027793 78 LSGHNFESLPTGI----SQLQRLKCLHLINCNMIRSLPE-L---PFC--LNYLNTSDCKR 127 (219)
Q Consensus 78 l~~n~l~~lp~~l----~~l~~L~~L~l~~~~~l~~lp~-~---~~~--L~~L~l~~~~~ 127 (219)
+++|.++.+|..+ ..+++|+.|++++| .++.+|. . ++. ++.|++++|+.
T Consensus 143 L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCCc
Confidence 9999999998765 57999999999996 4556663 1 233 47889988654
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.55 E-value=2.2e-14 Score=115.96 Aligned_cols=164 Identities=16% Similarity=0.077 Sum_probs=119.6
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccC-CCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGL-SSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~-~~l~~L~~L~l 78 (219)
++|++|++++|.+++++. ..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+..+ ..+++|++|++
T Consensus 99 ~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp TTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 456777777777777654 34788999999999877766778888999999999999876 34444 47899999999
Q ss_pred cCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEE
Q 027793 79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMF 155 (219)
Q Consensus 79 ~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l 155 (219)
++|.++.++. ...+++|++|++++|. ++.+|.. +++|+.|++++| .++.+|..+..+ ..++.+
T Consensus 177 ~~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l-----------~~L~~L 242 (317)
T 3o53_A 177 QYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFS-----------QNLEHF 242 (317)
T ss_dssp TTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCC-----------TTCCEE
T ss_pred CCCcCccccc-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHhhcC-----------CCCCEE
Confidence 9999998864 3458999999999965 4556543 478999999996 677888765443 256689
Q ss_pred EEcCCcccccccccchhHhHHHHHhhh
Q 027793 156 KFVNCVKLHKGTERNFFANFQRRVHNA 182 (219)
Q Consensus 156 ~~~~c~~l~~~~~~~~~~~~~~~~~~~ 182 (219)
++++++-... ....++..+..+...+
T Consensus 243 ~l~~N~~~~~-~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 243 DLRGNGFHCG-TLRDFFSKNQRVQTVA 268 (317)
T ss_dssp ECTTCCCBHH-HHHHHHHTCHHHHHHH
T ss_pred EccCCCccCc-CHHHHHhccccceEEE
Confidence 9988754412 2223445555554433
No 103
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.55 E-value=3e-14 Score=123.40 Aligned_cols=132 Identities=19% Similarity=0.224 Sum_probs=112.0
Q ss_pred CCCccEEEeecCCCcccCc--cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc---ccccCCCCCCCCE
Q 027793 1 MELLQEIDLFLSGIKELPS--SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLSSLKC 75 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L~~ 75 (219)
+++|++|++++|.+...+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +|..+..+++|++
T Consensus 395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 4789999999999988543 5889999999999999888888888999999999999999875 7889999999999
Q ss_pred EEecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCC
Q 027793 76 LELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLP 132 (219)
Q Consensus 76 L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp 132 (219)
|++++|.++.+ |..+..+++|++|++++|+.....|.. +++|+.|++++|+.....|
T Consensus 475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 99999999966 778999999999999997654443433 3789999999986554444
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=6.2e-14 Score=110.58 Aligned_cols=126 Identities=19% Similarity=0.218 Sum_probs=104.2
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecC
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~ 80 (219)
+++|++|++++|.+++++. +..+++|++|++++|.+.+ +|.. .. ++|++|++++|.+...+.+..+++|+.|++++
T Consensus 62 l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRN 137 (263)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTT
T ss_pred CCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCChhhcCcccccEEECCC
Confidence 4789999999999999888 9999999999999996544 5543 33 99999999999987555789999999999999
Q ss_pred CcCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCCc
Q 027793 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp~ 133 (219)
|.++.++ .+..+++|+.|++++|.. ..++. .+++|+.|++++|+ +...|.
T Consensus 138 N~i~~~~-~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~l~~N~-~~~~~~ 189 (263)
T 1xeu_A 138 NKLKSIV-MLGFLSKLEVLDLHGNEI-TNTGGLTRLKKVNWIDLTGQK-CVNEPV 189 (263)
T ss_dssp SCCCBCG-GGGGCTTCCEEECTTSCC-CBCTTSTTCCCCCEEEEEEEE-EECCCE
T ss_pred CcCCCCh-HHccCCCCCEEECCCCcC-cchHHhccCCCCCEEeCCCCc-ccCCcc
Confidence 9999887 788999999999999754 44443 24789999999965 444443
No 105
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=1.4e-14 Score=123.93 Aligned_cols=146 Identities=13% Similarity=0.038 Sum_probs=109.3
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCC-CCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLS-SLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~-~l~~L~~L~l 78 (219)
++|++|++++|.++.++. ..+++|++|++++|.+.+..|..++.+++|++|++++|.+. .|..+. .+++|++|++
T Consensus 99 ~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp TTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 467777778887777664 34688999999999877777778888999999999999876 555554 6889999999
Q ss_pred cCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEE
Q 027793 79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMF 155 (219)
Q Consensus 79 ~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l 155 (219)
++|.++.+|. ...+++|+.|++++|.. ..+|.. +++|+.|++++| .++.+|..+..+ ..+..+
T Consensus 177 s~N~l~~~~~-~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l-----------~~L~~L 242 (487)
T 3oja_A 177 QYNFIYDVKG-QVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFS-----------QNLEHF 242 (487)
T ss_dssp TTSCCCEEEC-CCCCTTCCEEECCSSCC-CEECGGGGGGTTCSEEECTTS-CCCEECTTCCCC-----------TTCCEE
T ss_pred CCCccccccc-cccCCCCCEEECCCCCC-CCCCHhHcCCCCccEEEecCC-cCcccchhhccC-----------CCCCEE
Confidence 9999887764 34688999999998654 445543 368999999885 566777765443 145588
Q ss_pred EEcCCccc
Q 027793 156 KFVNCVKL 163 (219)
Q Consensus 156 ~~~~c~~l 163 (219)
++++++-.
T Consensus 243 ~l~~N~l~ 250 (487)
T 3oja_A 243 DLRGNGFH 250 (487)
T ss_dssp ECTTCCBC
T ss_pred EcCCCCCc
Confidence 88887544
No 106
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.54 E-value=3.4e-14 Score=123.31 Aligned_cols=124 Identities=21% Similarity=0.165 Sum_probs=78.7
Q ss_pred CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~ 79 (219)
++|++|++++|.++++++ .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +|.. .+++|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 356777777777777553 4677777777777777655555666677777777777777665 5544 66777777777
Q ss_pred CCcCCcc--chhhhCCCCCCEEeccCCCCCCcCCCCCCCC--CeEeccCCcC
Q 027793 80 GHNFESL--PTGISQLQRLKCLHLINCNMIRSLPELPFCL--NYLNTSDCKR 127 (219)
Q Consensus 80 ~n~l~~l--p~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L--~~L~l~~~~~ 127 (219)
+|.++.+ |..++++++|++|++++|.....-...+.+| ++|++++|..
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred CCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 7777654 3567777777777777754332111222344 7777776544
No 107
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=1.4e-13 Score=101.94 Aligned_cols=122 Identities=25% Similarity=0.275 Sum_probs=98.6
Q ss_pred ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEecCC
Q 027793 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLELSGH 81 (219)
Q Consensus 4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l~~n 81 (219)
.+.+++++++++.+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+. +| ..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 467899999999999654 378999999999776655556789999999999999876 44 44688999999999999
Q ss_pred cCCccchh-hhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCC
Q 027793 82 NFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRL 128 (219)
Q Consensus 82 ~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l 128 (219)
.++.+|.. +..+++|++|++++|. ++.+|.. +++|++|++++|+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 99977764 6889999999999964 4566643 368899999887543
No 108
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.52 E-value=1.2e-13 Score=117.33 Aligned_cols=126 Identities=20% Similarity=0.306 Sum_probs=94.1
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecC
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~ 80 (219)
+++|++|++++|.++.++. +..+++|++|++++|.+.+..| ++.+++|++|++++|.+.....+..+++|+.|++++
T Consensus 176 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 252 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred CCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCC
Confidence 4678888888888877754 7788888888888886655444 667888888988888876444677888999999999
Q ss_pred CcCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCC
Q 027793 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLP 132 (219)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp 132 (219)
|.++.++. +..+++|+.|++++|.. ..++. .+++|+.|++++|. ++.++
T Consensus 253 n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~L~~n~-l~~~~ 303 (466)
T 1o6v_A 253 NQISNLAP-LSGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQ-LEDIS 303 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSC-CSCCG
T ss_pred Cccccchh-hhcCCCCCEEECCCCcc-CccccccCCCccCeEEcCCCc-ccCch
Confidence 99887765 78889999999998654 33432 24678888887753 44444
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=1.8e-14 Score=103.81 Aligned_cols=102 Identities=23% Similarity=0.237 Sum_probs=90.8
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc--ccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL--SGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p--~~~~~l~~L~~L~ 77 (219)
+++|++|++++|.++++ ..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+. ++ ..+..+++|++|+
T Consensus 41 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp CTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred cCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence 47899999999999998 56899999999999999877778888888999999999999987 33 7889999999999
Q ss_pred ecCCcCCccch----hhhCCCCCCEEeccC
Q 027793 78 LSGHNFESLPT----GISQLQRLKCLHLIN 103 (219)
Q Consensus 78 l~~n~l~~lp~----~l~~l~~L~~L~l~~ 103 (219)
+++|.++.+|. .+..+++|+.|++++
T Consensus 120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999997775 688999999999863
No 110
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.52 E-value=9.3e-14 Score=126.05 Aligned_cols=136 Identities=19% Similarity=0.225 Sum_probs=110.9
Q ss_pred CCCccEEEeecCC-Cccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--cccc--CCCCCCCC
Q 027793 1 MELLQEIDLFLSG-IKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSG--LSSLSSLK 74 (219)
Q Consensus 1 l~~L~~L~l~~~~-i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~--~~~l~~L~ 74 (219)
+++|++|++++|. +..+ |..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+. .|.. +..+++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 5789999999984 4456 566999999999999999888788999999999999999999876 4544 88999999
Q ss_pred EEEecCCcCCcc--chhhhCCCCCCEEeccCCCCCCcCCCCC-----CCCCeEeccCCcCCCcCCcccc
Q 027793 75 CLELSGHNFESL--PTGISQLQRLKCLHLINCNMIRSLPELP-----FCLNYLNTSDCKRLQSLPKISS 136 (219)
Q Consensus 75 ~L~l~~n~l~~l--p~~l~~l~~L~~L~l~~~~~l~~lp~~~-----~~L~~L~l~~~~~l~~lp~~~~ 136 (219)
+|++++|.++.+ +..++++++|++|++++|......+..+ ++|+.|++++|......|..+.
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~ 195 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchh
Confidence 999999999855 3578999999999999976655555432 6788999988766665554433
No 111
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.52 E-value=1.1e-13 Score=120.86 Aligned_cols=132 Identities=20% Similarity=0.173 Sum_probs=104.7
Q ss_pred CCCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~ 77 (219)
+++|++|++++|.|+.+|+. |..+++|++|++++|.+.+..+..|.++++|++|++++|.+. +| ..++.+++|++|+
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 57899999999999998764 899999999999999765555567899999999999999877 44 4689999999999
Q ss_pred ecCCcCC--ccchhhhCCCCCCEEeccCCCCCCcCCCCC-------CCCCeEeccCCcCCCcCCc
Q 027793 78 LSGHNFE--SLPTGISQLQRLKCLHLINCNMIRSLPELP-------FCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 78 l~~n~l~--~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~-------~~L~~L~l~~~~~l~~lp~ 133 (219)
+++|.++ .+|..++.+++|++|++++|...+..+..+ .....++++.+ .++.++.
T Consensus 155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n-~l~~i~~ 218 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQP 218 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC-CCCEECT
T ss_pred cccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC-cccccCc
Confidence 9999987 467888999999999999976544333332 23345666663 4554443
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=1.7e-13 Score=119.07 Aligned_cols=117 Identities=25% Similarity=0.319 Sum_probs=75.5
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecC
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~ 80 (219)
++|++|++++|.|+.+| ..+++|++|++++|.+.+ +|. +.. +|++|++++|.+. +|. .+++|+.|++++
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADN 149 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCC
Confidence 45777888887777777 346777777777775544 665 444 7777777777665 444 456677777777
Q ss_pred CcCCccchhhhCCCCCCEEeccCCCCCCcCCCCCCCCCeEeccCCcCCCcCCc
Q 027793 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~~~~l~~lp~ 133 (219)
|.++.+|. .+++|+.|++++|. ++.+|...++|+.|++++| .++.+|.
T Consensus 150 N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N-~L~~lp~ 197 (571)
T 3cvr_A 150 NQLTMLPE---LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTN-LLESLPA 197 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSSCCC
T ss_pred CccCcCCC---cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCC-CCCchhh
Confidence 77766664 45667777776653 3445553356666666664 4555555
No 113
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=8.8e-14 Score=103.04 Aligned_cols=108 Identities=21% Similarity=0.273 Sum_probs=92.6
Q ss_pred CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l 78 (219)
++|++|++++|.++.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +| ..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 5799999999999998765 689999999999999776655556789999999999999887 44 45788999999999
Q ss_pred cCCcCCccchh-hhCCCCCCEEeccCCCCCCc
Q 027793 79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRS 109 (219)
Q Consensus 79 ~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~ 109 (219)
++|.++.+|.. +..+++|++|++++|+....
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 99999988875 57899999999999865543
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=6.4e-15 Score=119.61 Aligned_cols=150 Identities=20% Similarity=0.248 Sum_probs=115.1
Q ss_pred CCCccEEEeecCCCcc-cCccccCCCCCcEEeccCCCCCC--CCccccCCCCCCcEEecccc-ccc---ccccCCCCC-C
Q 027793 1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLG--FLPESLCNLKKLQKLCLSQC-RCL---ILSGLSSLS-S 72 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~-~~~---~p~~~~~l~-~ 72 (219)
+++|++|++++|.+++ .+..+..+++|++|++++|...+ .++..+..+++|++|++++| .+. ++..+..++ +
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 4789999999999886 67778899999999999994333 36667888999999999999 665 566678889 9
Q ss_pred CCEEEecCCc--CC--ccchhhhCCCCCCEEeccCCCCCC-cCCC---CCCCCCeEeccCCcCCCcCCccccCCCCCccc
Q 027793 73 LKCLELSGHN--FE--SLPTGISQLQRLKCLHLINCNMIR-SLPE---LPFCLNYLNTSDCKRLQSLPKISSCLETPSNQ 144 (219)
Q Consensus 73 L~~L~l~~n~--l~--~lp~~l~~l~~L~~L~l~~~~~l~-~lp~---~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~ 144 (219)
|++|++++|. ++ .+|..+..+++|+.|++++|..++ ..+. ..++|++|++++|..+.. ..+..+ .
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l--~--- 269 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP--ETLLEL--G--- 269 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG--GGGGGG--G---
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH--HHHHHH--h---
Confidence 9999999994 54 678888899999999999987433 3332 247999999999974332 211111 0
Q ss_pred cCCCCCCCeEEEEcCC
Q 027793 145 TRGNSYLPVMFKFVNC 160 (219)
Q Consensus 145 ~~~~~~~l~~l~~~~c 160 (219)
+...++.+++++|
T Consensus 270 ---~~~~L~~L~l~~~ 282 (336)
T 2ast_B 270 ---EIPTLKTLQVFGI 282 (336)
T ss_dssp ---GCTTCCEEECTTS
T ss_pred ---cCCCCCEEeccCc
Confidence 1125679999998
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.51 E-value=3.7e-13 Score=114.07 Aligned_cols=101 Identities=23% Similarity=0.316 Sum_probs=67.6
Q ss_pred CCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCcCCccchhhhCCCCCCEEeccC
Q 027793 25 EGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLIN 103 (219)
Q Consensus 25 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~ 103 (219)
++|++|++++|.+.+ +| .++.+++|++|++++|.+. +|.. ..+|++|++++|.++.+| .++++++|+.|++++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCC
Confidence 467777777775543 66 4777777777777777655 4432 246777777777777776 577777777777777
Q ss_pred CCCCCcCCCCCCCCCeEeccCCcCCCcCCc
Q 027793 104 CNMIRSLPELPFCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 104 ~~~l~~lp~~~~~L~~L~l~~~~~l~~lp~ 133 (219)
|. ++.+|..+++|++|++++| .++.+|.
T Consensus 205 N~-l~~l~~~~~~L~~L~l~~n-~l~~lp~ 232 (454)
T 1jl5_A 205 NS-LKKLPDLPLSLESIVAGNN-ILEELPE 232 (454)
T ss_dssp SC-CSSCCCCCTTCCEEECCSS-CCSSCCC
T ss_pred Cc-CCcCCCCcCcccEEECcCC-cCCcccc
Confidence 54 4456666667777777775 4556653
No 116
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.3e-13 Score=101.67 Aligned_cols=101 Identities=20% Similarity=0.278 Sum_probs=86.9
Q ss_pred ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEecCC
Q 027793 4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLELSGH 81 (219)
Q Consensus 4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l~~n 81 (219)
.++++++++.++.+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+. +| ..+..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5789999999999998663 88999999999887777888999999999999999877 44 44688999999999999
Q ss_pred cCCccch-hhhCCCCCCEEeccCCCC
Q 027793 82 NFESLPT-GISQLQRLKCLHLINCNM 106 (219)
Q Consensus 82 ~l~~lp~-~l~~l~~L~~L~l~~~~~ 106 (219)
.++.+|. .+..+++|+.|++++|..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 9998876 478899999999999754
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=2.7e-14 Score=127.62 Aligned_cols=120 Identities=19% Similarity=0.230 Sum_probs=95.1
Q ss_pred CCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCcCCccchhh
Q 027793 12 SGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHNFESLPTGI 90 (219)
Q Consensus 12 ~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~l~~lp~~l 90 (219)
|.+...|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. +|..+..+++|++|+|++|.|+.+|..+
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~ 289 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289 (727)
T ss_dssp -----------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred cceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh
Confidence 333334556888999999999999654 78888889999999999999887 8888999999999999999999999999
Q ss_pred hCCCCCCEEeccCCCCCCcCCCCC---CCCCeEeccCCcCCCcCCc
Q 027793 91 SQLQRLKCLHLINCNMIRSLPELP---FCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 91 ~~l~~L~~L~l~~~~~l~~lp~~~---~~L~~L~l~~~~~l~~lp~ 133 (219)
+.+++|++|+|++| .++.+|..+ ++|+.|++++|.....+|.
T Consensus 290 ~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 290 GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 99999999999996 457888654 6899999999765544443
No 118
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=1.8e-13 Score=101.36 Aligned_cols=100 Identities=23% Similarity=0.345 Sum_probs=82.7
Q ss_pred cEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cccc-CCCCCCCCEEEecCCc
Q 027793 5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSG-LSSLSSLKCLELSGHN 82 (219)
Q Consensus 5 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~-~~~l~~L~~L~l~~n~ 82 (219)
+.+++++++++.+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+. +|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 578888999988988664 78999999999777777778888999999999999876 5543 5788999999999999
Q ss_pred CCccchh-hhCCCCCCEEeccCCCC
Q 027793 83 FESLPTG-ISQLQRLKCLHLINCNM 106 (219)
Q Consensus 83 l~~lp~~-l~~l~~L~~L~l~~~~~ 106 (219)
++.+|.. +..+++|++|++++|..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred cceeCHHHhccccCCCEEEeCCCCc
Confidence 9888765 78888899999988653
No 119
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.48 E-value=6.1e-13 Score=116.73 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=12.5
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCC
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC 35 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~ 35 (219)
+|++|++++|.++.+|. .+++|++|++++|
T Consensus 82 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 82 ELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp TCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 34444444444444443 2334444444443
No 120
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=1.8e-13 Score=112.15 Aligned_cols=153 Identities=20% Similarity=0.173 Sum_probs=110.0
Q ss_pred CCCccEEEeecCCCcc-cCcc-ccCCCCCcE-EeccCCCCCCCCccccCCCCCCcEEeccccccc---------------
Q 027793 1 MELLQEIDLFLSGIKE-LPSS-IEHIEGLKC-LRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--------------- 62 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~-lp~~-~~~l~~L~~-L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--------------- 62 (219)
|++|++|++++|.+.+ +|.. |..+++++. +.+.+|.+....|..+..+++|++|++++|.+.
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 132 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh
Confidence 5789999999999865 6654 788888776 445556555555677889999999999998765
Q ss_pred -----------cc-ccCCCC-CCCCEEEecCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCC
Q 027793 63 -----------IL-SGLSSL-SSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDC 125 (219)
Q Consensus 63 -----------~p-~~~~~l-~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~ 125 (219)
++ ..+..+ ..++.|++++|.++.+|.......+|+.+++++++.++.+|.. +++|+.|++++|
T Consensus 133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred hhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence 11 123333 3578889999999988877767788999999888888888853 368999999885
Q ss_pred cCCCcCCccccCCCCCccccCCCCCCCeEEEEcCCccccccc
Q 027793 126 KRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGT 167 (219)
Q Consensus 126 ~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~ 167 (219)
.++.+|..... .+..+.+.++..++..+
T Consensus 213 -~l~~lp~~~~~-------------~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 213 -RIHSLPSYGLE-------------NLKKLRARSTYNLKKLP 240 (350)
T ss_dssp -CCCCCCSSSCT-------------TCCEEECTTCTTCCCCC
T ss_pred -CcCccChhhhc-------------cchHhhhccCCCcCcCC
Confidence 68888764321 23355555555555544
No 121
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.48 E-value=7.1e-13 Score=112.34 Aligned_cols=124 Identities=25% Similarity=0.337 Sum_probs=68.7
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCcc-------------------ccCCCCCCcEEeccccccc
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-------------------SLCNLKKLQKLCLSQCRCL 62 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-------------------~~~~l~~L~~L~l~~~~~~ 62 (219)
++|++|++++|.++++| .++.+++|++|++++|.+.+ +|. .++.+++|++|++++|.+.
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC
Confidence 35677777777777776 36677777777777664433 332 2334444444444444432
Q ss_pred -ccccCCCCCCCCEEEecCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCCCCCCCeEeccCCcCCCcCCc
Q 027793 63 -ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK 133 (219)
Q Consensus 63 -~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~~~~l~~lp~ 133 (219)
+|.. .++|++|++++|.++.+| .++.+++|++|++++|. +..+|..+++|+.|++++| .++.+|.
T Consensus 209 ~l~~~---~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N-~l~~l~~ 274 (454)
T 1jl5_A 209 KLPDL---PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDN-YLTDLPE 274 (454)
T ss_dssp SCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSS-CCSCCCC
T ss_pred cCCCC---cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCcccccccccCEEECCCC-cccccCc
Confidence 2211 134555555555555555 35666677777776643 3445555566666666664 3444443
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=8.1e-14 Score=103.23 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=89.9
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccc--cCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILS--GLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~--~~~~l~~L~~L~l 78 (219)
++|++|++++|.++++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +|. .+..+++|+.|++
T Consensus 42 ~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp TCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 4899999999999998 55899999999999999665443334488999999999999986 565 7889999999999
Q ss_pred cCCcCCccchh----hhCCCCCCEEeccCCCC
Q 027793 79 SGHNFESLPTG----ISQLQRLKCLHLINCNM 106 (219)
Q Consensus 79 ~~n~l~~lp~~----l~~l~~L~~L~l~~~~~ 106 (219)
++|.++.+|.. +..+++|+.|++++|..
T Consensus 121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred cCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999988875 89999999999998753
No 123
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.46 E-value=4.7e-13 Score=117.47 Aligned_cols=118 Identities=25% Similarity=0.263 Sum_probs=84.8
Q ss_pred CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCC
Q 027793 3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGH 81 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n 81 (219)
++++|++++|.++.+|..+. ++|++|++++|.+ ..+|. .+++|++|++++|.+. +|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l-~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNL-TSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCC-SCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCC-CCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 46788888888888887654 6888888888754 45554 5678888888888765 554 5677888888888
Q ss_pred cCCccchhhhCCCCCCEEeccCCCCCCcCCCCCCCCCeEeccCCcCCCcCCcc
Q 027793 82 NFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKI 134 (219)
Q Consensus 82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~~~~l~~lp~~ 134 (219)
.++.+|. .+++|+.|++++| .+..+|..+++|++|++++| .++.+|..
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~l~~L~~L~Ls~N-~l~~l~~~ 159 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDN-QLASLPAL 159 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCCC
T ss_pred cCCCCCC---CCCCcCEEECCCC-CCCcCCCCCCCCCEEECcCC-cCCCcCCc
Confidence 8877775 5567777888775 45567776777777777775 45555543
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=1.2e-14 Score=120.59 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=70.3
Q ss_pred CCCccEEEeecCCCcc----cCccc-------cCCCCCcEEeccCCCCCC----CCccccCCCCCCcEEeccccccc---
Q 027793 1 MELLQEIDLFLSGIKE----LPSSI-------EHIEGLKCLRLNSCTKLG----FLPESLCNLKKLQKLCLSQCRCL--- 62 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~----lp~~~-------~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~--- 62 (219)
+++|++|++++|.+.. +|..+ ..+++|++|++++|.+.. .+|..+..+++|++|++++|.+.
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 3567777777654432 33333 566777777777775554 25556666777777777777654
Q ss_pred ---ccccCCCC---------CCCCEEEecCCcCC--ccc---hhhhCCCCCCEEeccCCCCCC-----cCC---CCCCCC
Q 027793 63 ---ILSGLSSL---------SSLKCLELSGHNFE--SLP---TGISQLQRLKCLHLINCNMIR-----SLP---ELPFCL 117 (219)
Q Consensus 63 ---~p~~~~~l---------~~L~~L~l~~n~l~--~lp---~~l~~l~~L~~L~l~~~~~l~-----~lp---~~~~~L 117 (219)
++..+..+ ++|++|++++|.++ .++ ..+..+++|++|++++|.... .+| ...++|
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence 22223233 56666666666664 333 345556666666666654321 111 112456
Q ss_pred CeEeccCCc
Q 027793 118 NYLNTSDCK 126 (219)
Q Consensus 118 ~~L~l~~~~ 126 (219)
+.|++++|.
T Consensus 219 ~~L~Ls~n~ 227 (386)
T 2ca6_A 219 KVLDLQDNT 227 (386)
T ss_dssp CEEECCSSC
T ss_pred cEEECcCCC
Confidence 666666653
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=1.1e-14 Score=109.92 Aligned_cols=123 Identities=21% Similarity=0.206 Sum_probs=94.3
Q ss_pred ccEEEeecC--CCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecC
Q 027793 4 LQEIDLFLS--GIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 4 L~~L~l~~~--~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~ 80 (219)
++...+.+. .++.+|..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. +|..+..+++|++|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 444555543 555666688899999999999986554 67 7888999999999999876 666666678899999999
Q ss_pred CcCCccchhhhCCCCCCEEeccCCCCCCcCCC-----CCCCCCeEeccCCcCCCc
Q 027793 81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE-----LPFCLNYLNTSDCKRLQS 130 (219)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-----~~~~L~~L~l~~~~~l~~ 130 (219)
|.++.+| .+..+++|+.|++++|. +..++. .+++|++|++++|+....
T Consensus 103 N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 103 NQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 9999887 68888999999999865 444332 357899999998754333
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=1.8e-13 Score=113.46 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=20.3
Q ss_pred CCccEEEeecCCCcc-----cCccccCCCCCcEEeccCCCC
Q 027793 2 ELLQEIDLFLSGIKE-----LPSSIEHIEGLKCLRLNSCTK 37 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~ 37 (219)
++|++|++++|.+.. +|..+..+++|++|++++|.+
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 456666666665554 444455555566666655543
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=2.7e-12 Score=111.59 Aligned_cols=99 Identities=21% Similarity=0.286 Sum_probs=87.7
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-c--cccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-I--LSGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~--p~~~~~l~~L~~L~ 77 (219)
|++|++|++++|.++.+|..++.+++|++|++++|.+.+ +| .++.+++|++|++++|.+. + |..++.+++|+.|+
T Consensus 462 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp GTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred cccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 468999999999999999999999999999999997665 77 8999999999999999987 4 88999999999999
Q ss_pred ecCCcCCccchh----hhCCCCCCEEec
Q 027793 78 LSGHNFESLPTG----ISQLQRLKCLHL 101 (219)
Q Consensus 78 l~~n~l~~lp~~----l~~l~~L~~L~l 101 (219)
+++|.++.+|.. +..+++|+.|++
T Consensus 540 L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 540 LQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999877643 345889998864
No 128
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=8.1e-12 Score=101.92 Aligned_cols=101 Identities=19% Similarity=0.115 Sum_probs=84.1
Q ss_pred cEEEeecC-CCcccCccccCCCCCcEEeccC-CCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecC
Q 027793 5 QEIDLFLS-GIKELPSSIEHIEGLKCLRLNS-CTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSG 80 (219)
Q Consensus 5 ~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~ 80 (219)
..++.+++ +++.+|. +..+++|++|++++ |.+.+..+..|..+++|++|++++|.+. .|..|..+++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35678887 8999999 99999999999996 7666666678999999999999999877 456788999999999999
Q ss_pred CcCCccchhhhCCCCCCEEeccCCCC
Q 027793 81 HNFESLPTGISQLQRLKCLHLINCNM 106 (219)
Q Consensus 81 n~l~~lp~~l~~l~~L~~L~l~~~~~ 106 (219)
|.++.+|..+.....|+.|++++|+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCc
Confidence 99998887654444499999998754
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=6e-14 Score=105.89 Aligned_cols=153 Identities=19% Similarity=0.197 Sum_probs=99.1
Q ss_pred ccCCCCCcEEeccCCCCCCCCcc------ccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCcCCccchhhhCC
Q 027793 21 IEHIEGLKCLRLNSCTKLGFLPE------SLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHNFESLPTGISQL 93 (219)
Q Consensus 21 ~~~l~~L~~L~l~~~~~~~~~p~------~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l 93 (219)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+. +| .+..+++|++|++++|.++.+|..+..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~ 92 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVA 92 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcC
Confidence 33445555555555555444444 7888899999999998876 55 7778889999999999988888877778
Q ss_pred CCCCEEeccCCCCCCcCCCC--CCCCCeEeccCCcCCCcCCc--cccCCCCCccccCCCCCCCeEEEEcCCccccccccc
Q 027793 94 QRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSLPK--ISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTER 169 (219)
Q Consensus 94 ~~L~~L~l~~~~~l~~lp~~--~~~L~~L~l~~~~~l~~lp~--~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~ 169 (219)
++|+.|++++|. ++.+|.. +++|+.|++++| .++.++. .+..+ ..++.+++++++--...+..
T Consensus 93 ~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l-----------~~L~~L~l~~N~l~~~~~~~ 159 (198)
T 1ds9_A 93 DTLEELWISYNQ-IASLSGIEKLVNLRVLYMSNN-KITNWGEIDKLAAL-----------DKLEDLLLAGNPLYNDYKEN 159 (198)
T ss_dssp HHCSEEEEEEEE-CCCHHHHHHHHHSSEEEESEE-ECCCHHHHHHHTTT-----------TTCSEEEECSCHHHHHHHTT
T ss_pred CcCCEEECcCCc-CCcCCccccCCCCCEEECCCC-cCCchhHHHHHhcC-----------CCCCEEEecCCccccccccc
Confidence 889999999864 4455532 368899999885 4565543 22222 14568888887432222221
Q ss_pred chhHhHHHHHhhhCCCcc
Q 027793 170 NFFANFQRRVHNALPGIL 187 (219)
Q Consensus 170 ~~~~~~~~~~~~~lp~~~ 187 (219)
.....+.......+|.+.
T Consensus 160 ~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 160 NATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp TTHHHHHHHHHHHCSSCS
T ss_pred cchHHHHHHHHHhCCCcE
Confidence 222333444444556554
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=2.2e-11 Score=90.02 Aligned_cols=87 Identities=22% Similarity=0.214 Sum_probs=74.3
Q ss_pred CCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccc-cCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILS-GLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~-~~~~l~~L~~L~l 78 (219)
++|++|++++|.|+.+ |..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +|. .+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 5789999999999997 456899999999999999766544445689999999999999987 555 4889999999999
Q ss_pred cCCcCCccch
Q 027793 79 SGHNFESLPT 88 (219)
Q Consensus 79 ~~n~l~~lp~ 88 (219)
++|.+...+.
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999886554
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=2.3e-12 Score=105.96 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=78.4
Q ss_pred CCccEEEeecCCCcccC-----ccccCCC-CCcEEeccCCCCCCCCccccCCC-----CCCcEEeccccccc--ccc---
Q 027793 2 ELLQEIDLFLSGIKELP-----SSIEHIE-GLKCLRLNSCTKLGFLPESLCNL-----KKLQKLCLSQCRCL--ILS--- 65 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp-----~~~~~l~-~L~~L~l~~~~~~~~~p~~~~~l-----~~L~~L~l~~~~~~--~p~--- 65 (219)
++|++|++++|.+++.+ ..+..++ +|++|++++|.+....+..+..+ ++|++|++++|.+. .+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 34788888888887766 3466677 78888888886655555555443 78888888888765 111
Q ss_pred -cCCCC-CCCCEEEecCCcCCccch-h----hhC-CCCCCEEeccCCCCCC----cCCC----CCCCCCeEeccCCc
Q 027793 66 -GLSSL-SSLKCLELSGHNFESLPT-G----ISQ-LQRLKCLHLINCNMIR----SLPE----LPFCLNYLNTSDCK 126 (219)
Q Consensus 66 -~~~~l-~~L~~L~l~~n~l~~lp~-~----l~~-l~~L~~L~l~~~~~l~----~lp~----~~~~L~~L~l~~~~ 126 (219)
.+..+ ++|++|++++|.++..+. . +.. .++|++|++++|.... .++. ...+|++|++++|.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 23444 677888888877764432 2 233 2577777777764432 1111 11367777777753
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.23 E-value=4.1e-12 Score=104.47 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=27.5
Q ss_pred CccEEEeecCCCcccC-ccccCC-----CCCcEEeccCCCCCCCCccc----cCCC-CCCcEEeccccccc
Q 027793 3 LLQEIDLFLSGIKELP-SSIEHI-----EGLKCLRLNSCTKLGFLPES----LCNL-KKLQKLCLSQCRCL 62 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp-~~~~~l-----~~L~~L~l~~~~~~~~~p~~----~~~l-~~L~~L~l~~~~~~ 62 (219)
+|++|++++|.+++.. ..+..+ ++|++|++++|.+.+..+.. +..+ ++|++|++++|.+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 4555555555555532 223332 55555555555443333322 2222 45555555555443
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=5.6e-11 Score=87.45 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=73.5
Q ss_pred CCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccc-cCCCCCCCCEEEe
Q 027793 2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILS-GLSSLSSLKCLEL 78 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~-~~~~l~~L~~L~l 78 (219)
++|++|++++|.|+.+ |..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +|. .+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 5789999999999997 455899999999999999777665656789999999999999987 554 5889999999999
Q ss_pred cCCcCCcc
Q 027793 79 SGHNFESL 86 (219)
Q Consensus 79 ~~n~l~~l 86 (219)
++|.++..
T Consensus 110 ~~N~~~c~ 117 (170)
T 3g39_A 110 LNNPWDCA 117 (170)
T ss_dssp CSSCBCTT
T ss_pred CCCCCCCC
Confidence 99998743
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.21 E-value=1.8e-12 Score=109.41 Aligned_cols=102 Identities=23% Similarity=0.185 Sum_probs=60.4
Q ss_pred CCCcEEeccCCCCCCC----CccccCCCCCCcEEeccccccc------c-cccCCCCCCCCEEEecCCcCCc-----cch
Q 027793 25 EGLKCLRLNSCTKLGF----LPESLCNLKKLQKLCLSQCRCL------I-LSGLSSLSSLKCLELSGHNFES-----LPT 88 (219)
Q Consensus 25 ~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~------~-p~~~~~l~~L~~L~l~~n~l~~-----lp~ 88 (219)
++|++|++++|.+... ++..+..+++|++|++++|.+. + +..+..+++|++|++++|.++. ++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 3555556555544332 3445556677777777777654 1 2223356777788887777764 566
Q ss_pred hhhCCCCCCEEeccCCCCCCc----CC----CCCCCCCeEeccCCc
Q 027793 89 GISQLQRLKCLHLINCNMIRS----LP----ELPFCLNYLNTSDCK 126 (219)
Q Consensus 89 ~l~~l~~L~~L~l~~~~~l~~----lp----~~~~~L~~L~l~~~~ 126 (219)
.+..+++|++|++++|..... +. ...++|++|++++|.
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 677777788888877643211 11 112467777777664
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.12 E-value=3.7e-12 Score=107.51 Aligned_cols=153 Identities=18% Similarity=0.152 Sum_probs=110.3
Q ss_pred CCCccEEEeecCCCccc------CccccCCCCCcEEeccCCCCCCC----CccccCCCCCCcEEeccccccc------cc
Q 027793 1 MELLQEIDLFLSGIKEL------PSSIEHIEGLKCLRLNSCTKLGF----LPESLCNLKKLQKLCLSQCRCL------IL 64 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~l------p~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~------~p 64 (219)
+++|++|++++|.+.+. +..+..+++|++|++++|.+... ++..+..+++|++|++++|.+. +.
T Consensus 226 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 305 (461)
T 1z7x_W 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH
Confidence 47899999999988763 22234689999999999965443 5777778999999999999875 22
Q ss_pred ccC-CCCCCCCEEEecCCcCCc-----cchhhhCCCCCCEEeccCCCCCCcCC--------CCCCCCCeEeccCCcCCC-
Q 027793 65 SGL-SSLSSLKCLELSGHNFES-----LPTGISQLQRLKCLHLINCNMIRSLP--------ELPFCLNYLNTSDCKRLQ- 129 (219)
Q Consensus 65 ~~~-~~l~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~~~~l~~lp--------~~~~~L~~L~l~~~~~l~- 129 (219)
..+ ...++|++|++++|.++. ++..+..+++|++|++++|......+ ...++|++|++++|. ++
T Consensus 306 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~ 384 (461)
T 1z7x_W 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSD 384 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCH
T ss_pred HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CCh
Confidence 222 234689999999999873 56778888999999999975432211 114589999999974 44
Q ss_pred ----cCCccccCCCCCccccCCCCCCCeEEEEcCCcccccc
Q 027793 130 ----SLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKG 166 (219)
Q Consensus 130 ----~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~ 166 (219)
.+|..+... ..++.++++++ .+...
T Consensus 385 ~~~~~l~~~l~~~-----------~~L~~L~l~~N-~i~~~ 413 (461)
T 1z7x_W 385 SSCSSLAATLLAN-----------HSLRELDLSNN-CLGDA 413 (461)
T ss_dssp HHHHHHHHHHHHC-----------CCCCEEECCSS-SCCHH
T ss_pred hhHHHHHHHHHhC-----------CCccEEECCCC-CCCHH
Confidence 556554432 15568999887 45543
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=1.4e-09 Score=88.14 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=45.6
Q ss_pred CCCccEEEeecCCCc--------------------ccCcc-ccC--------CCCCcEEeccCCCCCCCCccccCCCCCC
Q 027793 1 MELLQEIDLFLSGIK--------------------ELPSS-IEH--------IEGLKCLRLNSCTKLGFLPESLCNLKKL 51 (219)
Q Consensus 1 l~~L~~L~l~~~~i~--------------------~lp~~-~~~--------l~~L~~L~l~~~~~~~~~p~~~~~l~~L 51 (219)
+++|++||+++|.+. .+|.. |.. +++|+.+++.+ .+...-+.+|..+++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 468999999999888 34443 667 89999999987 4554445578889999
Q ss_pred cEEecccccc
Q 027793 52 QKLCLSQCRC 61 (219)
Q Consensus 52 ~~L~l~~~~~ 61 (219)
+.+++++|.+
T Consensus 127 ~~l~l~~n~i 136 (329)
T 3sb4_A 127 KICQIRKKTA 136 (329)
T ss_dssp CEEEBCCSSC
T ss_pred ceEEcCCCCc
Confidence 9999988864
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.99 E-value=1.2e-09 Score=88.88 Aligned_cols=85 Identities=20% Similarity=0.141 Sum_probs=72.1
Q ss_pred CCCccEEEeec-CCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEE
Q 027793 1 MELLQEIDLFL-SGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLE 77 (219)
Q Consensus 1 l~~L~~L~l~~-~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~ 77 (219)
+++|++|+|++ |.++.+|. .|..+++|++|++++|.+.+..|..|..+++|++|+|++|.+. +|..+.....|+.|+
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~ 109 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELV 109 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEE
Confidence 35799999996 99999885 5999999999999999888877888999999999999999987 555443333499999
Q ss_pred ecCCcCCc
Q 027793 78 LSGHNFES 85 (219)
Q Consensus 78 l~~n~l~~ 85 (219)
+.+|.+..
T Consensus 110 l~~N~~~c 117 (347)
T 2ifg_A 110 LSGNPLHC 117 (347)
T ss_dssp CCSSCCCC
T ss_pred eeCCCccC
Confidence 99999873
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.98 E-value=6e-11 Score=98.01 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=24.7
Q ss_pred CCCcEEeccccccc------ccccCCCCCCCCEEEecCCcCCc-----cchhhhCCCCCCEEeccCC
Q 027793 49 KKLQKLCLSQCRCL------ILSGLSSLSSLKCLELSGHNFES-----LPTGISQLQRLKCLHLINC 104 (219)
Q Consensus 49 ~~L~~L~l~~~~~~------~p~~~~~l~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~~ 104 (219)
++|++|++++|.+. ++..+...++|++|++++|.++. ++..+...++|+.|++++|
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 44455555554432 22233344445555555554431 2233344444555555544
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.95 E-value=2.1e-11 Score=106.00 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=15.4
Q ss_pred CCCCcEEeccCCCCCCCCccccC-CCCCCcEEecccc
Q 027793 24 IEGLKCLRLNSCTKLGFLPESLC-NLKKLQKLCLSQC 59 (219)
Q Consensus 24 l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~~ 59 (219)
+++|++|++++|.+....+..+. .+++|++|++++|
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 44455555554433322222222 3444555555444
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.92 E-value=2e-10 Score=99.82 Aligned_cols=104 Identities=14% Similarity=0.191 Sum_probs=52.5
Q ss_pred CCCccEEEeecCCCcc-cCccccC-CC-CCcEEeccCCCCCC--CCccccCCCCCCcEEeccccccc------ccccCCC
Q 027793 1 MELLQEIDLFLSGIKE-LPSSIEH-IE-GLKCLRLNSCTKLG--FLPESLCNLKKLQKLCLSQCRCL------ILSGLSS 69 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~-lp~~~~~-l~-~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~------~p~~~~~ 69 (219)
+++|++|+++++.+++ .+..+.. ++ +|++|++++|.... .++.....+++|++|++++|.+. ++..+..
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 3567777777776654 2223333 22 36777776664211 11222235666666666666532 1122234
Q ss_pred CCCCCEEEecCCcCC-----ccchhhhCCCCCCEEeccCC
Q 027793 70 LSSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINC 104 (219)
Q Consensus 70 l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~~ 104 (219)
+++|+.|++++|.++ .++..+.++++|+.|++++|
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 455556666555553 23333445555555555554
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.92 E-value=1.5e-10 Score=100.64 Aligned_cols=105 Identities=16% Similarity=0.098 Sum_probs=55.6
Q ss_pred CCCccEEEeecCCCcccC-----ccccCCCCCcEEeccCCCCCC----CCccccCCCCCCcEEeccccccc-ccc-----
Q 027793 1 MELLQEIDLFLSGIKELP-----SSIEHIEGLKCLRLNSCTKLG----FLPESLCNLKKLQKLCLSQCRCL-ILS----- 65 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp-----~~~~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~-~p~----- 65 (219)
+++|++|++++|.+++.. .....+++|++|++++|.+.+ .++..+..+++|++|++++|... +|.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 356777777766554321 123445666666666664431 22333445566666666665432 222
Q ss_pred ----------------------cCCCCCCCCEEEecCCcCCccchhhhCCCCCCEEeccCCC
Q 027793 66 ----------------------GLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCN 105 (219)
Q Consensus 66 ----------------------~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~ 105 (219)
.+..+++|+.++++++....+|..+..+++|++|++++|.
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 3344445555555554444555555566666666666655
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.76 E-value=1.2e-09 Score=94.76 Aligned_cols=103 Identities=22% Similarity=0.248 Sum_probs=55.7
Q ss_pred CCccEEEeecCCCcc-cCcccc-CCCCCcEEeccCCCCCCC--CccccCCCCCCcEEeccccccc------ccccCCCCC
Q 027793 2 ELLQEIDLFLSGIKE-LPSSIE-HIEGLKCLRLNSCTKLGF--LPESLCNLKKLQKLCLSQCRCL------ILSGLSSLS 71 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~-lp~~~~-~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~------~p~~~~~l~ 71 (219)
++|++|+++++.+++ .+..+. .+++|++|++++|...+. ++..+..+++|++|++++|.+. ++.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 567777777776655 222232 466777777776633222 3333345667777777766533 222223555
Q ss_pred CCCEEEecCCc--CC--ccchhhhCCCCCCEEeccCC
Q 027793 72 SLKCLELSGHN--FE--SLPTGISQLQRLKCLHLINC 104 (219)
Q Consensus 72 ~L~~L~l~~n~--l~--~lp~~l~~l~~L~~L~l~~~ 104 (219)
+|+.|++++|. ++ .++..+..+++|++|++++|
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 66666666664 22 22222344566666666655
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.75 E-value=2.5e-09 Score=88.29 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=79.2
Q ss_pred CCccEEEeecCCCcccCc-----cc-cCCCCCcEEeccCCCCCC----CCccccCCCCCCcEEeccccccc------ccc
Q 027793 2 ELLQEIDLFLSGIKELPS-----SI-EHIEGLKCLRLNSCTKLG----FLPESLCNLKKLQKLCLSQCRCL------ILS 65 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~-----~~-~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~------~p~ 65 (219)
++|++|++++|.+++... .+ ...++|++|++++|.+.. .++..+..+++|++|++++|.+. ++.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 357788888887765221 12 245789999999986533 24445678899999999999976 456
Q ss_pred cCCCCCCCCEEEecCCcCCc-----cchhhhCCCCCCEEeccCCCC
Q 027793 66 GLSSLSSLKCLELSGHNFES-----LPTGISQLQRLKCLHLINCNM 106 (219)
Q Consensus 66 ~~~~l~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~~~~ 106 (219)
.+...++|+.|++++|.++. +...+...++|++|++++|..
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 67778899999999999873 445666789999999999754
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.70 E-value=8.4e-09 Score=76.80 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=70.9
Q ss_pred ccCCCCCcEEeccCC-CCCC----CCccccCCCCCCcEEeccccccc------ccccCCCCCCCCEEEecCCcCCc----
Q 027793 21 IEHIEGLKCLRLNSC-TKLG----FLPESLCNLKKLQKLCLSQCRCL------ILSGLSSLSSLKCLELSGHNFES---- 85 (219)
Q Consensus 21 ~~~l~~L~~L~l~~~-~~~~----~~p~~~~~l~~L~~L~l~~~~~~------~p~~~~~l~~L~~L~l~~n~l~~---- 85 (219)
+...++|++|++++| .+.. .+...+...++|++|++++|.+. +...+...++|++|++++|.|+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 456778888888887 5432 23445666788888888888765 34445556778888888888772
Q ss_pred -cchhhhCCCCCCEEec--cCCCCCCc----CCCC---CCCCCeEeccCCc
Q 027793 86 -LPTGISQLQRLKCLHL--INCNMIRS----LPEL---PFCLNYLNTSDCK 126 (219)
Q Consensus 86 -lp~~l~~l~~L~~L~l--~~~~~l~~----lp~~---~~~L~~L~l~~~~ 126 (219)
+...+...++|++|++ ++|..... +... .++|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4556677778888888 66543221 1111 2578888888763
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=4.6e-08 Score=79.12 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=47.3
Q ss_pred CCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccc-cccCCCCCCCC-EEEecCCcCCccc-hhhhCCCCCCEEe
Q 027793 24 IEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLK-CLELSGHNFESLP-TGISQLQRLKCLH 100 (219)
Q Consensus 24 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-p~~~~~l~~L~-~L~l~~n~l~~lp-~~l~~l~~L~~L~ 100 (219)
+++|+.+++++|.+...-+..|..+++|+.+++.+|-..+ +..|.++++|+ .+++.+ .++.++ .+|.++++|+.++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 5566666666654333333345566666666666652222 23456666666 666665 555443 4556666666666
Q ss_pred ccCCCCCCcCC
Q 027793 101 LINCNMIRSLP 111 (219)
Q Consensus 101 l~~~~~l~~lp 111 (219)
++++ .++.++
T Consensus 304 l~~n-~i~~I~ 313 (329)
T 3sb4_A 304 ATGD-KITTLG 313 (329)
T ss_dssp ECSS-CCCEEC
T ss_pred eCCC-ccCccc
Confidence 6552 344444
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.41 E-value=3.9e-07 Score=74.85 Aligned_cols=150 Identities=13% Similarity=0.116 Sum_probs=93.3
Q ss_pred CCCccEEEeecCCCc----------ccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccC-
Q 027793 1 MELLQEIDLFLSGIK----------ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGL- 67 (219)
Q Consensus 1 l~~L~~L~l~~~~i~----------~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~- 67 (219)
+++|+.|.+...... ++...+..+++|+.|++++|... .++. + .+++|++|++..|.+. ....+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 368999998764322 13344567899999999987322 3343 3 3889999999988754 11122
Q ss_pred -CCCCCCCEEEecCC--c------CCccchhh--hCCCCCCEEeccCCCCCCcCC------CCCCCCCeEeccCCcCCCc
Q 027793 68 -SSLSSLKCLELSGH--N------FESLPTGI--SQLQRLKCLHLINCNMIRSLP------ELPFCLNYLNTSDCKRLQS 130 (219)
Q Consensus 68 -~~l~~L~~L~l~~n--~------l~~lp~~l--~~l~~L~~L~l~~~~~l~~lp------~~~~~L~~L~l~~~~~l~~ 130 (219)
..+++|+.|+|+.+ . +..+...+ ..+++|+.|++++|......+ ..+++|++|+++.| .++.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d 293 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTD 293 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCCh
Confidence 36899999998632 1 22222223 357899999999876532111 23578999999875 4544
Q ss_pred -----CCccccCCCCCccccCCCCCCCeEEEEcCCcccccc
Q 027793 131 -----LPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKG 166 (219)
Q Consensus 131 -----lp~~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~ 166 (219)
++..+..+ ..++.+++++| .+.+.
T Consensus 294 ~G~~~L~~~L~~l-----------~~L~~L~L~~n-~i~d~ 322 (362)
T 2ra8_A 294 EGARLLLDHVDKI-----------KHLKFINMKYN-YLSDE 322 (362)
T ss_dssp HHHHHHHTTHHHH-----------TTCSEEECCSB-BCCHH
T ss_pred HHHHHHHhhcccC-----------CcceEEECCCC-cCCHH
Confidence 22221111 14568999887 45543
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=2e-07 Score=68.58 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=38.3
Q ss_pred CCcEEeccccccc--ccccCCCCCCCCEEEecCCc-CCc-cchhhhCC----CCCCEEeccCCCCCCc-----CCCCCCC
Q 027793 50 KLQKLCLSQCRCL--ILSGLSSLSSLKCLELSGHN-FES-LPTGISQL----QRLKCLHLINCNMIRS-----LPELPFC 116 (219)
Q Consensus 50 ~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~n~-l~~-lp~~l~~l----~~L~~L~l~~~~~l~~-----lp~~~~~ 116 (219)
+|+.||+++|.+. .-..+.++++|+.|++++|. ++. --..+..+ ++|++|++++|..++. +. .+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCCC
Confidence 4555555555433 11234455555555555554 441 11123332 3466666666554432 11 1355
Q ss_pred CCeEeccCCcCCCc
Q 027793 117 LNYLNTSDCKRLQS 130 (219)
Q Consensus 117 L~~L~l~~~~~l~~ 130 (219)
|++|++++|+.+++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 66666666665554
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=9.2e-08 Score=71.12 Aligned_cols=83 Identities=18% Similarity=0.111 Sum_probs=52.5
Q ss_pred cccCCCCCCcEEecccc-ccc------ccccCCCCCCCCEEEecCCcCC-----ccchhhhCCCCCCEEeccCCCCCCc-
Q 027793 43 ESLCNLKKLQKLCLSQC-RCL------ILSGLSSLSSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINCNMIRS- 109 (219)
Q Consensus 43 ~~~~~l~~L~~L~l~~~-~~~------~p~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~~~~l~~- 109 (219)
..+...++|++|++++| .+. +...+...++|++|++++|.+. .+...+...++|++|++++|.....
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34556777888888887 554 3445666677888888888775 2344556667788888887643221
Q ss_pred ---CCCC---CCCCCeEec--cCC
Q 027793 110 ---LPEL---PFCLNYLNT--SDC 125 (219)
Q Consensus 110 ---lp~~---~~~L~~L~l--~~~ 125 (219)
+... ..+|++|++ ++|
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCC
Confidence 1111 246888888 554
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.31 E-value=6.2e-07 Score=65.91 Aligned_cols=86 Identities=10% Similarity=0.108 Sum_probs=49.9
Q ss_pred CCCCEEEecCCcCC-ccchhhhCCCCCCEEeccCCCCCCc-----CCCC---CCCCCeEeccCCcCCCcCCccccCCCCC
Q 027793 71 SSLKCLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRS-----LPEL---PFCLNYLNTSDCKRLQSLPKISSCLETP 141 (219)
Q Consensus 71 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~~-----lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~ 141 (219)
..|+.||+++|.++ .--..+..+++|++|++++|..++. +... .++|++|++++|..+++-.-..-.. +
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~- 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-F- 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-C-
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-C-
Confidence 45777777777766 2223456677777777777765542 2221 1357777777777766532111100 1
Q ss_pred ccccCCCCCCCeEEEEcCCcccccc
Q 027793 142 SNQTRGNSYLPVMFKFVNCVKLHKG 166 (219)
Q Consensus 142 ~~~~~~~~~~l~~l~~~~c~~l~~~ 166 (219)
..++.|++++|+.+++.
T Consensus 139 --------~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 139 --------RNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp --------TTCCEEEEESCTTCCCH
T ss_pred --------CCCCEEECCCCCCCCch
Confidence 14557777777777764
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=6.9e-07 Score=70.19 Aligned_cols=64 Identities=27% Similarity=0.357 Sum_probs=36.0
Q ss_pred CCCCCcEEeccccccc----ccccCCCCCCCCEEEecCCcCCccchhhhCCC--CCCEEeccCCCCCCcCC
Q 027793 47 NLKKLQKLCLSQCRCL----ILSGLSSLSSLKCLELSGHNFESLPTGISQLQ--RLKCLHLINCNMIRSLP 111 (219)
Q Consensus 47 ~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~--~L~~L~l~~~~~l~~lp 111 (219)
.+++|+.|++++|.+. +|..+..+++|+.|+|++|.++.+. .+..+. +|++|++++|.....+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 4566666666666654 2233345666666666666666542 233333 66666666666554444
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.19 E-value=9.2e-06 Score=67.55 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=44.6
Q ss_pred CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccccc-ccCCCCCCCCEEEecC
Q 027793 2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL-SGLSSLSSLKCLELSG 80 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p-~~~~~l~~L~~L~l~~ 80 (219)
++|+.+++..|+++.++...-...+|+.+.+..+ ....-...|..+++|+.+++..+-..++ ..|.+ .+|+.+.+.
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp- 256 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLP- 256 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEE-
T ss_pred ccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeC-
Confidence 3455555555555555443222345555555432 2222233455556666666554322221 22222 344555442
Q ss_pred CcCCcc-chhhhCCCCCCEEeccC
Q 027793 81 HNFESL-PTGISQLQRLKCLHLIN 103 (219)
Q Consensus 81 n~l~~l-p~~l~~l~~L~~L~l~~ 103 (219)
+.++.+ ..+|.++++|+.+++.+
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEES
T ss_pred CCccEEChhHhhCCCCCCEEEeCC
Confidence 234433 23455556666666554
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.14 E-value=2.2e-06 Score=70.40 Aligned_cols=124 Identities=17% Similarity=0.135 Sum_probs=83.7
Q ss_pred CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccC--CCCCCcEEecccc--cc-c------ccccC--
Q 027793 1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLC--NLKKLQKLCLSQC--RC-L------ILSGL-- 67 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~--~l~~L~~L~l~~~--~~-~------~p~~~-- 67 (219)
+++|+.|+++++.-..++. +. +++|++|++..|.+.......+. .+++|++|+++.+ .. . +...+
T Consensus 171 ~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp CTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 4789999999873224554 43 88999999988765333222333 7899999998642 11 0 11222
Q ss_pred CCCCCCCEEEecCCcCC-ccchhhh---CCCCCCEEeccCCCCCC----cCCCC---CCCCCeEeccCCc
Q 027793 68 SSLSSLKCLELSGHNFE-SLPTGIS---QLQRLKCLHLINCNMIR----SLPEL---PFCLNYLNTSDCK 126 (219)
Q Consensus 68 ~~l~~L~~L~l~~n~l~-~lp~~l~---~l~~L~~L~l~~~~~l~----~lp~~---~~~L~~L~l~~~~ 126 (219)
..+++|++|++.+|.++ ..+..+. .+++|++|+++.|.... .++.. +++|+.|++++|.
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 35799999999999987 3333332 57899999999865332 13333 4789999999874
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=3.2e-06 Score=66.39 Aligned_cols=64 Identities=20% Similarity=0.176 Sum_probs=39.3
Q ss_pred CCCCCCCEEEecCCcCCcc---chhhhCCCCCCEEeccCCCCCCcCCC--CCC--CCCeEeccCCcCCCcCC
Q 027793 68 SSLSSLKCLELSGHNFESL---PTGISQLQRLKCLHLINCNMIRSLPE--LPF--CLNYLNTSDCKRLQSLP 132 (219)
Q Consensus 68 ~~l~~L~~L~l~~n~l~~l---p~~l~~l~~L~~L~l~~~~~l~~lp~--~~~--~L~~L~l~~~~~l~~lp 132 (219)
..+++|+.|++++|.++.+ |..+..+++|+.|+|++|.. ..+.. .+. +|++|++++|+.-..+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSERELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSGGGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCchhhhhcccCCcceEEccCCcCccccC
Confidence 3466777778877777644 34556777777888777543 33221 112 67777777766544444
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.71 E-value=0.00033 Score=58.16 Aligned_cols=125 Identities=8% Similarity=0.062 Sum_probs=90.9
Q ss_pred CCCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-------ccccCCCCCC
Q 027793 1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-------ILSGLSSLSS 72 (219)
Q Consensus 1 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-------~p~~~~~l~~ 72 (219)
+++|+.+++..+ ++.++.. |.. .+|+.+.+..+ ....-+..|..+++|+.+++.++... .+..|.++++
T Consensus 225 ~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~ 301 (401)
T 4fdw_A 225 TSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK 301 (401)
T ss_dssp CTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred CCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence 357888888764 6667665 555 78999999653 44444567889999999999887653 3457889999
Q ss_pred CCEEEecCCcCCccc-hhhhCCCCCCEEeccCCCCCCcCCCC-C--CCCCeEeccCCcCCCcCC
Q 027793 73 LKCLELSGHNFESLP-TGISQLQRLKCLHLINCNMIRSLPEL-P--FCLNYLNTSDCKRLQSLP 132 (219)
Q Consensus 73 L~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~-~--~~L~~L~l~~~~~l~~lp 132 (219)
|+.+++.+ .++.++ .+|.++++|+.+.+..+ ++.++.. + .+|+.+++.++ .+..++
T Consensus 302 L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~~L~~l~l~~n-~~~~l~ 361 (401)
T 4fdw_A 302 LARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNTGIKEVKVEGT-TPPQVF 361 (401)
T ss_dssp CCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSSCCCEEEECCS-SCCBCC
T ss_pred CCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCCCCCEEEEcCC-CCcccc
Confidence 99999984 577665 46788999999999653 5555532 1 28999999885 344444
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.40 E-value=0.00016 Score=53.98 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=69.0
Q ss_pred cCCCCCcEEeccCCCCCCC-----CccccCCCCCCcEEeccccccc------ccccCCCCCCCCEEEecCCcCC-----c
Q 027793 22 EHIEGLKCLRLNSCTKLGF-----LPESLCNLKKLQKLCLSQCRCL------ILSGLSSLSSLKCLELSGHNFE-----S 85 (219)
Q Consensus 22 ~~l~~L~~L~l~~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~------~p~~~~~l~~L~~L~l~~n~l~-----~ 85 (219)
..-+.|+.|+++++..++. +.+.+..-+.|+.|++++|.+. +...+..-+.|++|+|++|.|+ .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 4457789999987523332 3445666788999999999876 4444555678999999999987 3
Q ss_pred cchhhhCCCCCCEEeccCCCC--CCc-----CCCC---CCCCCeEeccCC
Q 027793 86 LPTGISQLQRLKCLHLINCNM--IRS-----LPEL---PFCLNYLNTSDC 125 (219)
Q Consensus 86 lp~~l~~l~~L~~L~l~~~~~--l~~-----lp~~---~~~L~~L~l~~~ 125 (219)
+-.++..-+.|+.|++++|.. ++. +.+. -+.|+.|+++.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 445566667799999986421 221 1111 157888888653
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.26 E-value=0.0029 Score=51.62 Aligned_cols=89 Identities=13% Similarity=0.070 Sum_probs=53.2
Q ss_pred ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccccc-ccCCCCCCCCEEEecCCcCCccc-hhhhCCCCCCE
Q 027793 21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL-SGLSSLSSLKCLELSGHNFESLP-TGISQLQRLKC 98 (219)
Q Consensus 21 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~ 98 (219)
+..+..|+.+.+..+ ....-...+..+.+|+.+.+..+-..++ ..+.++++|+.+.+.++.++.++ .+|.++.+|+.
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 445566666666543 2222233455666777776655432232 35677788888888777777664 36677788888
Q ss_pred EeccCCCCCCcCCC
Q 027793 99 LHLINCNMIRSLPE 112 (219)
Q Consensus 99 L~l~~~~~l~~lp~ 112 (219)
+.+.. .++.++.
T Consensus 315 i~lp~--~l~~I~~ 326 (379)
T 4h09_A 315 VTLPT--ALKTIQV 326 (379)
T ss_dssp EECCT--TCCEECT
T ss_pred EEcCc--cccEEHH
Confidence 87754 2444443
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.13 E-value=0.0021 Score=52.90 Aligned_cols=101 Identities=15% Similarity=0.195 Sum_probs=61.0
Q ss_pred ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccccc-ccCCCCCCCCEEEecCCcCCccc-hhhhCCCCCCE
Q 027793 21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL-SGLSSLSSLKCLELSGHNFESLP-TGISQLQRLKC 98 (219)
Q Consensus 21 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~ 98 (219)
|..+.+|+.+.+..+ ....-...+.++++|+.+.+...-..++ ..|.++.+|+.+++..+ ++.+. .+|.++.+|+.
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 566777777777653 3333334566777777777764332233 45667777777777643 55443 35677777777
Q ss_pred EeccCCCCCCcCCCC----CCCCCeEeccCC
Q 027793 99 LHLINCNMIRSLPEL----PFCLNYLNTSDC 125 (219)
Q Consensus 99 L~l~~~~~l~~lp~~----~~~L~~L~l~~~ 125 (219)
+.+.. .++.++.. ..+|+.+++.++
T Consensus 339 i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 339 IAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred EEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 77754 24555532 256777776653
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.92 E-value=0.0017 Score=45.00 Aligned_cols=53 Identities=21% Similarity=0.187 Sum_probs=27.7
Q ss_pred EEEeecCCCc--ccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccc
Q 027793 6 EIDLFLSGIK--ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60 (219)
Q Consensus 6 ~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 60 (219)
.++.++++++ .+|..+. ++|++|++++|.+...-+..|..+++|+.|++++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555566666 5665332 346666666664433333334445555555555554
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.81 E-value=0.001 Score=49.52 Aligned_cols=82 Identities=10% Similarity=0.117 Sum_probs=59.0
Q ss_pred ccCCCCCCcEEecccc-ccc------ccccCCCCCCCCEEEecCCcCC-----ccchhhhCCCCCCEEeccCCCCCCc--
Q 027793 44 SLCNLKKLQKLCLSQC-RCL------ILSGLSSLSSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINCNMIRS-- 109 (219)
Q Consensus 44 ~~~~l~~L~~L~l~~~-~~~------~p~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~~~~l~~-- 109 (219)
.+..-+.|+.|+++++ .+. +.+.+..-+.|+.|+|++|.+. .+...+..-+.|++|+|++|.....
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455678999999986 554 4456677789999999999986 4455676778999999998654221
Q ss_pred --CCC---CCCCCCeEeccCC
Q 027793 110 --LPE---LPFCLNYLNTSDC 125 (219)
Q Consensus 110 --lp~---~~~~L~~L~l~~~ 125 (219)
+.+ .-..|++|+++++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 111 1257999999864
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.77 E-value=0.0056 Score=49.89 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=70.0
Q ss_pred CccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEec
Q 027793 3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 3 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~ 79 (219)
+|+.+.+..+ ++.+... +..+.+|+.+.+..+ ....-...+..+++|+.+.+.++.+. -...|.++.+|+.+.+.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 4555555443 4555443 677889999998754 33333446788999999999887654 34678899999999997
Q ss_pred CCcCCccc-hhhhCCCCCCEEeccC
Q 027793 80 GHNFESLP-TGISQLQRLKCLHLIN 103 (219)
Q Consensus 80 ~n~l~~lp-~~l~~l~~L~~L~l~~ 103 (219)
.+ ++.+. .+|.++.+|+.+.+..
T Consensus 319 ~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 319 TA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cc-ccEEHHHHhhCCCCCCEEEECC
Confidence 54 77664 4678889998887754
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.76 E-value=0.0034 Score=51.61 Aligned_cols=81 Identities=14% Similarity=0.046 Sum_probs=61.4
Q ss_pred ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccc-cccCCCCCCCCEEEecCCcCCccc-hhhhCCCCCCE
Q 027793 21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGHNFESLP-TGISQLQRLKC 98 (219)
Q Consensus 21 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-p~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~ 98 (219)
+..+.+|+.+.+..+ ....-..+|..+++|+.+++..+-..+ ...|.++++|+.+.+..+ ++.+. .+|.++.+|+.
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 677889999998764 433334568889999999997653223 467889999999999766 77664 47888999999
Q ss_pred EeccC
Q 027793 99 LHLIN 103 (219)
Q Consensus 99 L~l~~ 103 (219)
+++..
T Consensus 371 i~lp~ 375 (394)
T 4fs7_A 371 VELPK 375 (394)
T ss_dssp EEEEG
T ss_pred EEECC
Confidence 99875
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.59 E-value=0.005 Score=50.63 Aligned_cols=101 Identities=9% Similarity=0.153 Sum_probs=72.7
Q ss_pred CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793 2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS 79 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~ 79 (219)
.+|+.+.+..+ +..+.. .|..+.+|+.+.+... ....-...|.++.+|+.+++..+-.. ....|.++++|+.+.+.
T Consensus 265 ~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 265 AYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp SSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEC
T ss_pred ccccEEecccc-cceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEEC
Confidence 45666666543 234444 3778899999999743 33333446888999999999875333 34578899999999996
Q ss_pred CCcCCccc-hhhhCCCCCCEEeccCCC
Q 027793 80 GHNFESLP-TGISQLQRLKCLHLINCN 105 (219)
Q Consensus 80 ~n~l~~lp-~~l~~l~~L~~L~l~~~~ 105 (219)
.+ ++.+. .+|.++.+|+.+++.++.
T Consensus 343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 343 SS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred cc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 54 77664 478999999999998753
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.49 E-value=0.0095 Score=48.91 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=52.9
Q ss_pred CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccc------------c------
Q 027793 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC------------L------ 62 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~------------~------ 62 (219)
.+|+.+.+.. .++.++.. |..+++|+.+++..+ ....-...+..+++|+.+.+..+-. .
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~ 148 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE 148 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence 4566666653 35666553 667777777777643 2222223444555555544432210 0
Q ss_pred -----ccccCCCCCCCCEEEecCCcCCccc-hhhhCCCCCCEEeccC
Q 027793 63 -----ILSGLSSLSSLKCLELSGHNFESLP-TGISQLQRLKCLHLIN 103 (219)
Q Consensus 63 -----~p~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~ 103 (219)
....|.++++|+.+.+.++- +.++ .+|.++.+|+.+++..
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCT
T ss_pred cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCC
Confidence 12346667777777776443 3332 3456666677666653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.93 E-value=0.0067 Score=41.94 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=32.3
Q ss_pred CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCC
Q 027793 2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTK 37 (219)
Q Consensus 2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~ 37 (219)
++|++|+|++|.|+.+|.. |..+++|++|++.+|.+
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3799999999999999886 78899999999999965
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.03 E-value=7.8 Score=24.93 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=28.1
Q ss_pred CCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccc
Q 027793 12 SGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQC 59 (219)
Q Consensus 12 ~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 59 (219)
..++.+... |..+.+|+.+.+..+ ....-...|..+.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 345555554 677777777777653 43333445666677766666553
Done!