Query 027795
Match_columns 218
No_of_seqs 109 out of 248
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 15:18:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13398 Peptidase_M50B: Pepti 100.0 3.6E-41 7.7E-46 286.6 18.7 178 25-213 2-183 (200)
2 cd06161 S2P-M50_SpoIVFB SpoIVF 98.2 3.7E-06 8E-11 72.0 6.3 64 43-107 36-104 (208)
3 cd06164 S2P-M50_SpoIVFB_CBS Sp 97.9 3.9E-05 8.5E-10 66.8 8.3 62 45-107 53-119 (227)
4 cd06163 S2P-M50_PDZ_RseP-like 97.5 0.00022 4.8E-09 60.2 6.1 25 46-70 10-34 (182)
5 cd06160 S2P-M50_like_2 Unchara 97.4 0.00027 5.8E-09 59.8 5.5 64 44-107 40-113 (183)
6 cd06159 S2P-M50_PDZ_Arch Uncha 97.3 0.00025 5.3E-09 63.3 4.1 63 45-107 118-191 (263)
7 PF02163 Peptidase_M50: Peptid 97.3 0.00014 3.1E-09 60.5 2.5 29 45-73 7-35 (192)
8 cd05709 S2P-M50 Site-2 proteas 97.2 0.00023 5E-09 58.9 2.7 63 45-107 8-96 (180)
9 cd06162 S2P-M50_PDZ_SREBP Ster 97.0 0.0011 2.3E-08 59.7 5.3 62 45-106 135-207 (277)
10 TIGR00054 RIP metalloprotease 96.3 0.006 1.3E-07 57.5 4.9 27 45-71 14-40 (420)
11 PRK10779 zinc metallopeptidase 96.1 0.019 4E-07 54.5 7.6 28 46-73 16-43 (449)
12 KOG2921 Intramembrane metallop 94.6 0.035 7.6E-07 52.3 3.7 28 45-72 131-158 (484)
13 PF01434 Peptidase_M41: Peptid 94.0 0.048 1E-06 46.8 3.0 36 46-81 29-68 (213)
14 cd06158 S2P-M50_like_1 Unchara 92.5 0.13 2.8E-06 43.3 3.3 61 45-105 9-100 (181)
15 PF00413 Peptidase_M10: Matrix 91.4 0.12 2.5E-06 41.0 1.8 17 41-57 101-117 (154)
16 cd04279 ZnMc_MMP_like_1 Zinc-d 90.5 0.15 3.3E-06 41.1 1.7 17 42-58 101-117 (156)
17 cd04268 ZnMc_MMP_like Zinc-dep 89.6 0.21 4.5E-06 40.1 1.8 15 44-58 93-107 (165)
18 cd04278 ZnMc_MMP Zinc-dependen 89.1 0.17 3.6E-06 40.9 0.9 17 41-57 103-119 (157)
19 PF01432 Peptidase_M3: Peptida 89.1 0.35 7.5E-06 45.6 3.2 24 43-66 240-263 (458)
20 cd06258 Peptidase_M3_like The 89.0 0.25 5.3E-06 45.1 2.1 30 39-68 148-177 (365)
21 cd04277 ZnMc_serralysin_like Z 87.4 0.3 6.5E-06 40.5 1.4 14 45-58 113-126 (186)
22 cd06459 M3B_Oligoendopeptidase 87.3 0.33 7.2E-06 44.7 1.8 23 41-63 218-240 (427)
23 PRK10280 dipeptidyl carboxypep 87.2 0.42 9E-06 48.1 2.5 28 38-65 457-484 (681)
24 COG0339 Dcp Zn-dependent oligo 87.0 0.39 8.5E-06 48.1 2.2 35 40-80 462-496 (683)
25 CHL00176 ftsH cell division pr 86.4 0.88 1.9E-05 45.5 4.3 38 45-82 438-479 (638)
26 smart00235 ZnMc Zinc-dependent 86.3 0.35 7.5E-06 38.1 1.2 12 47-58 88-99 (140)
27 cd06457 M3A_MIP Peptidase M3 m 86.1 0.62 1.3E-05 44.4 3.0 27 39-65 242-268 (458)
28 cd06456 M3A_DCP_Oligopeptidase 85.7 0.66 1.4E-05 43.9 2.9 28 42-69 205-232 (422)
29 cd06455 M3A_TOP Peptidase M3 T 85.0 0.76 1.7E-05 43.9 3.0 24 43-66 261-284 (472)
30 PF14247 DUF4344: Domain of un 84.6 0.76 1.6E-05 40.1 2.6 18 44-61 91-108 (220)
31 PRK10733 hflB ATP-dependent me 84.4 1.4 2.9E-05 44.0 4.6 31 46-76 409-441 (644)
32 cd04327 ZnMc_MMP_like_3 Zinc-d 84.1 0.61 1.3E-05 39.3 1.7 14 45-58 92-105 (198)
33 TIGR02290 M3_fam_3 oligoendope 83.4 0.64 1.4E-05 45.5 1.7 21 42-62 372-392 (587)
34 PF13582 Reprolysin_3: Metallo 83.3 0.6 1.3E-05 35.7 1.3 12 46-57 108-119 (124)
35 cd00203 ZnMc Zinc-dependent me 83.2 0.6 1.3E-05 37.3 1.3 16 44-59 95-110 (167)
36 TIGR01241 FtsH_fam ATP-depende 83.1 1.7 3.6E-05 41.7 4.5 41 41-81 307-351 (495)
37 PF01447 Peptidase_M4: Thermol 83.1 0.89 1.9E-05 37.3 2.2 20 39-58 128-148 (150)
38 PRK10911 oligopeptidase A; Pro 83.1 0.9 1.9E-05 45.7 2.7 21 43-63 461-481 (680)
39 TIGR02289 M3_not_pepF oligoend 79.8 1.4 3E-05 42.9 2.6 23 42-64 334-356 (549)
40 TIGR00181 pepF oligoendopeptid 77.0 1.7 3.7E-05 42.5 2.4 21 43-63 376-396 (591)
41 PF09471 Peptidase_M64: IgA Pe 76.8 1.1 2.4E-05 40.1 0.9 18 44-61 215-232 (264)
42 cd04280 ZnMc_astacin_like Zinc 76.4 1.3 2.8E-05 36.9 1.2 14 46-59 75-88 (180)
43 COG2856 Predicted Zn peptidase 75.6 1.5 3.3E-05 38.1 1.4 18 41-58 68-85 (213)
44 PF13574 Reprolysin_2: Metallo 75.0 1.7 3.7E-05 35.9 1.6 20 45-64 111-130 (173)
45 PF13583 Reprolysin_4: Metallo 74.7 1.6 3.4E-05 37.3 1.3 21 44-64 136-156 (206)
46 cd04283 ZnMc_hatching_enzyme Z 73.7 1.8 3.9E-05 36.6 1.4 14 46-59 78-91 (182)
47 PF10263 SprT-like: SprT-like 73.4 3.1 6.7E-05 33.2 2.6 21 42-62 57-77 (157)
48 PF13688 Reprolysin_5: Metallo 72.9 2.5 5.4E-05 34.9 2.0 20 41-60 138-157 (196)
49 KOG2090 Metalloendopeptidase f 72.8 2.8 6.1E-05 41.8 2.6 31 32-62 466-496 (704)
50 PF06114 DUF955: Domain of unk 72.8 3 6.6E-05 30.6 2.3 21 40-60 37-57 (122)
51 cd04270 ZnMc_TACE_like Zinc-de 72.1 2.3 4.9E-05 37.2 1.7 15 45-59 167-181 (244)
52 PF01400 Astacin: Astacin (Pep 72.1 2.5 5.5E-05 35.6 1.9 16 45-60 79-94 (191)
53 cd04281 ZnMc_BMP1_TLD Zinc-dep 70.7 2.3 4.9E-05 36.5 1.4 13 46-58 88-100 (200)
54 cd04269 ZnMc_adamalysin_II_lik 70.5 2.8 6.1E-05 34.7 1.9 17 42-58 128-144 (194)
55 PF05572 Peptidase_M43: Pregna 70.2 2.3 5E-05 34.8 1.3 16 42-57 66-81 (154)
56 COG1164 Oligoendopeptidase F [ 70.1 3.2 6.9E-05 41.2 2.4 25 44-68 379-403 (598)
57 PF12388 Peptidase_M57: Dual-a 69.0 2.3 5.1E-05 37.0 1.1 11 47-57 135-145 (211)
58 cd04267 ZnMc_ADAM_like Zinc-de 68.8 1.9 4.1E-05 35.6 0.5 22 42-63 130-151 (192)
59 cd04282 ZnMc_meprin Zinc-depen 64.9 3.4 7.4E-05 36.3 1.3 13 46-58 121-133 (230)
60 smart00731 SprT SprT homologue 64.3 6.5 0.00014 31.6 2.7 18 44-61 58-75 (146)
61 cd06460 M32_Taq Peptidase fami 63.8 4.7 0.0001 38.1 2.1 19 42-60 156-174 (396)
62 PF04298 Zn_peptidase_2: Putat 63.1 4.5 9.7E-05 35.5 1.7 14 45-58 89-102 (222)
63 PF13485 Peptidase_MA_2: Pepti 61.0 9.3 0.0002 28.2 2.9 23 42-64 22-44 (128)
64 PF14891 Peptidase_M91: Effect 60.6 6.8 0.00015 32.5 2.3 24 41-65 99-122 (174)
65 PF01421 Reprolysin: Reprolysi 60.5 6.1 0.00013 32.9 2.0 17 41-57 127-143 (199)
66 COG0465 HflB ATP-dependent Zn 60.1 8 0.00017 38.6 3.0 35 47-81 408-446 (596)
67 PF02031 Peptidase_M7: Strepto 59.6 5.7 0.00012 32.1 1.6 10 48-57 80-89 (132)
68 cd04276 ZnMc_MMP_like_2 Zinc-d 59.0 6.6 0.00014 33.6 2.0 15 44-58 115-129 (197)
69 KOG0734 AAA+-type ATPase conta 58.9 1.6 3.5E-05 43.3 -2.0 43 39-81 551-595 (752)
70 KOG3854 SPRT-like metalloprote 57.4 8 0.00017 37.5 2.4 18 44-61 350-367 (505)
71 TIGR03296 M6dom_TIGR03296 M6 f 57.3 2.5 5.3E-05 37.9 -1.0 12 46-57 166-177 (286)
72 cd04272 ZnMc_salivary_gland_MP 57.1 6.1 0.00013 33.6 1.5 17 43-59 143-159 (220)
73 KOG3714 Meprin A metalloprotea 56.6 5.4 0.00012 37.7 1.2 15 46-60 160-174 (411)
74 cd04271 ZnMc_ADAM_fungal Zinc- 55.8 4 8.7E-05 35.4 0.1 12 47-58 147-158 (228)
75 COG0750 Predicted membrane-ass 55.8 13 0.00029 33.6 3.6 30 46-75 14-43 (375)
76 cd06461 M2_ACE Peptidase famil 53.9 8.7 0.00019 37.2 2.1 19 43-62 245-263 (477)
77 PRK14584 hmsS hemin storage sy 53.1 93 0.002 25.8 7.7 51 164-214 64-114 (153)
78 PF01435 Peptidase_M48: Peptid 51.7 10 0.00022 31.5 1.9 17 41-57 85-101 (226)
79 PRK03982 heat shock protein Ht 49.7 10 0.00022 33.9 1.7 17 41-57 121-137 (288)
80 PF12725 DUF3810: Protein of u 48.3 8.5 0.00018 35.2 1.0 18 40-57 191-208 (318)
81 PRK03001 M48 family peptidase; 48.2 11 0.00024 33.6 1.7 17 41-57 120-136 (283)
82 PF14521 Aspzincin_M35: Lysine 48.2 11 0.00024 30.5 1.6 23 33-55 84-106 (148)
83 PF10462 Peptidase_M66: Peptid 47.2 9.4 0.0002 35.0 1.1 13 46-58 194-206 (305)
84 COG0501 HtpX Zn-dependent prot 46.9 12 0.00026 32.7 1.7 19 39-57 151-169 (302)
85 PRK03072 heat shock protein Ht 46.5 12 0.00026 33.6 1.7 17 40-56 122-138 (288)
86 PF05548 Peptidase_M11: Gameto 46.1 10 0.00023 34.7 1.2 20 44-64 149-168 (314)
87 PF02128 Peptidase_M36: Fungal 45.8 3 6.6E-05 39.3 -2.3 29 47-75 187-215 (378)
88 PRK01345 heat shock protein Ht 45.2 13 0.00028 34.0 1.7 17 41-57 120-136 (317)
89 PF07998 Peptidase_M54: Peptid 45.1 15 0.00032 31.6 1.9 16 42-57 142-157 (194)
90 PF04228 Zn_peptidase: Putativ 45.1 20 0.00042 32.7 2.8 21 41-61 166-186 (292)
91 COG5549 Predicted Zn-dependent 43.4 12 0.00027 32.7 1.2 19 40-58 182-200 (236)
92 PRK04897 heat shock protein Ht 43.3 14 0.00031 33.2 1.7 16 41-56 133-148 (298)
93 PRK05457 heat shock protein Ht 41.7 16 0.00035 32.8 1.7 17 40-56 129-145 (284)
94 PRK13267 archaemetzincin-like 41.4 18 0.00038 30.5 1.8 15 43-57 123-137 (179)
95 cd04273 ZnMc_ADAMTS_like Zinc- 41.0 5.1 0.00011 33.8 -1.5 16 43-58 138-153 (207)
96 KOG2089 Metalloendopeptidase f 40.6 24 0.00053 35.7 2.9 31 39-69 489-519 (718)
97 KOG1565 Gelatinase A and relat 40.1 11 0.00024 36.5 0.5 33 42-76 208-240 (469)
98 cd04275 ZnMc_pappalysin_like Z 40.0 4.1 8.9E-05 35.5 -2.3 17 42-58 134-150 (225)
99 PRK02391 heat shock protein Ht 39.6 18 0.00039 32.7 1.7 16 41-56 129-144 (296)
100 PF13994 PgaD: PgaD-like prote 38.7 2E+02 0.0043 22.8 9.7 51 163-213 64-115 (138)
101 PF12315 DUF3633: Protein of u 38.3 19 0.00042 31.4 1.6 19 44-63 90-110 (212)
102 PRK01265 heat shock protein Ht 36.8 21 0.00046 32.9 1.7 16 41-56 136-151 (324)
103 COG2738 Predicted Zn-dependent 36.7 21 0.00046 31.0 1.6 13 45-57 92-104 (226)
104 PRK02870 heat shock protein Ht 36.6 21 0.00046 33.0 1.7 16 41-56 169-184 (336)
105 PRK04860 hypothetical protein; 35.8 35 0.00076 28.3 2.8 21 44-64 62-82 (160)
106 PF02074 Peptidase_M32: Carbox 34.0 30 0.00065 33.8 2.3 20 41-60 255-274 (494)
107 PHA00657 crystallin beta/gamma 31.2 26 0.00056 38.3 1.5 16 45-60 791-806 (2052)
108 PF09527 ATPase_gene1: Putativ 30.9 1.6E+02 0.0034 19.5 4.9 37 146-182 16-53 (55)
109 KOG2661 Peptidase family M48 [ 30.3 37 0.00079 32.0 2.1 16 44-59 274-289 (424)
110 PF01457 Peptidase_M8: Leishma 30.2 32 0.0007 33.5 1.9 15 44-58 209-223 (521)
111 TIGR02230 ATPase_gene1 F0F1-AT 30.0 1.7E+02 0.0037 22.5 5.5 35 150-184 62-97 (100)
112 PRK04351 hypothetical protein; 29.3 49 0.0011 27.1 2.6 22 42-64 58-79 (149)
113 PHA02456 zinc metallopeptidase 29.1 35 0.00076 27.2 1.6 12 47-58 81-92 (141)
114 COG4783 Putative Zn-dependent 28.5 37 0.00081 33.1 2.0 16 41-56 126-141 (484)
115 PF08325 WLM: WLM domain; Int 28.4 35 0.00076 28.9 1.6 14 44-57 81-94 (186)
116 PF05547 Peptidase_M6: Immune 28.1 8.6 0.00019 38.7 -2.5 12 46-57 222-233 (645)
117 COG4784 Putative Zn-dependent 27.4 27 0.00059 33.0 0.8 15 44-58 123-137 (479)
118 COG2317 Zn-dependent carboxype 26.9 42 0.0009 32.8 1.9 20 42-61 256-275 (497)
119 PF13402 M60-like: Peptidase M 26.5 32 0.00069 30.3 1.1 10 49-58 223-232 (307)
120 KOG2719 Metalloprotease [Gener 25.7 38 0.00083 32.5 1.5 13 44-56 279-291 (428)
121 PF01863 DUF45: Protein of unk 25.4 37 0.0008 28.0 1.2 10 48-57 167-176 (205)
122 PF07607 DUF1570: Protein of u 24.4 44 0.00096 26.7 1.4 15 46-60 2-16 (128)
123 KOG3607 Meltrins, fertilins an 24.2 44 0.00096 34.1 1.7 16 42-57 320-335 (716)
124 PRK14585 pgaD putative PGA bio 22.7 4.3E+02 0.0093 21.6 8.1 38 176-213 67-104 (137)
125 KOG1047 Bifunctional leukotrie 22.2 40 0.00087 33.6 0.9 35 45-82 288-323 (613)
126 PF06262 DUF1025: Possibl zinc 22.1 54 0.0012 25.0 1.4 13 45-57 73-85 (97)
127 PF11350 DUF3152: Protein of u 22.0 35 0.00075 29.6 0.4 9 49-57 143-151 (203)
128 KOG2927 Membrane component of 21.9 1.2E+02 0.0027 28.5 4.0 69 6-75 180-262 (372)
129 PF11667 DUF3267: Protein of u 21.8 95 0.0021 23.4 2.8 20 47-66 6-25 (111)
130 PTZ00337 surface protease GP63 21.4 63 0.0014 32.2 2.1 14 44-57 228-241 (567)
131 PF13699 DUF4157: Domain of un 20.9 59 0.0013 23.6 1.4 12 46-57 62-73 (79)
132 CHL00206 ycf2 Ycf2; Provisiona 20.6 83 0.0018 36.2 2.9 26 47-72 1892-1919(2281)
No 1
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=100.00 E-value=3.6e-41 Score=286.57 Aligned_cols=178 Identities=30% Similarity=0.471 Sum_probs=156.9
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhCCceeeEEEEcCCCceeEEec--Cc-eeEEeccccchHHHHH
Q 027795 25 GVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRG--GI-YWLILPAGYLGSSFWG 101 (218)
Q Consensus 25 ~~~~v~~~~lW~~~il~Pfrll~t~~HE~GHAlaalltGg~v~~i~l~~d~SG~t~s~G--g~-~~li~~AGY~gp~l~G 101 (218)
.++.+++..+|+.++++|||+++|++||+|||++|+++|||+++|+++||+||.|.++| +. ++++++|||++|+++|
T Consensus 2 i~~~~~l~~~~~~~~~~~~~~l~t~~HE~gHal~a~l~G~~v~~i~l~~~~~G~~~~~~~~~~~~~~i~~aGyl~~~l~g 81 (200)
T PF13398_consen 2 IALIVALLLLWNPPIWYPFRLLVTFVHELGHALAALLTGGRVKGIVLFPDGSGVTVSSGPSGIGRFLIALAGYLGPALFG 81 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEEeCCCceEEEecCCCcchhHHhcccchHHHHHH
Confidence 45578889999999999999999999999999999999999999999999999999998 54 6899999999999999
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HhccchhhHHHHHHHHHHHhhhhhhhhHH
Q 027795 102 MALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVI-WVLQEETSVRILRYVILFIGICLSCCIFS 180 (218)
Q Consensus 102 ~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~vRn~~g~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~llflGv~~~~ysv~ 180 (218)
..+++++++++. +..+.+..+.++.+++++||+++...++.++++..+. ++.++ ..++++++|+|++.++|+++
T Consensus 82 ~~~~~~~~~~~~-~~~l~~~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ig~~~~l~~~~ 156 (200)
T PF13398_consen 82 LLLLWLLFSGWA-RAVLFLGLLILLVLLLFVRNWFGILVVILFGALLIALWFFAPP----WILRFILLFIGVFLLLYSVR 156 (200)
T ss_pred HHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHc
Confidence 999999855555 6666666666777789999999999999996555555 45555 88899999999999999999
Q ss_pred HHHHHHHhhHHhcCCCCCChHHHHHHHcCCCcc
Q 027795 181 SLLNELTSALFLISLVKRSVANVYSENYRCNEQ 213 (218)
Q Consensus 181 dl~~~~~~~~~~~~~~~~SDA~~LA~lt~~Pa~ 213 (218)
|+ ||+++ |+.++|||+++||+|++|+.
T Consensus 157 ~i-~~l~~-----~~~~~sDa~~la~lt~~p~~ 183 (200)
T PF13398_consen 157 DI-DDLFR-----RRVNASDADQLARLTGLPAW 183 (200)
T ss_pred CH-HHHhc-----CCCCCChHHHHHHHHCCCHH
Confidence 98 88887 99999999999999999964
No 2
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=98.17 E-value=3.7e-06 Score=71.99 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCceeeEEEEcCCCceeEEecC-----ceeEEeccccchHHHHHHHHHHH
Q 027795 43 FKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGG-----IYWLILPAGYLGSSFWGMALVLA 107 (218)
Q Consensus 43 frll~t~~HE~GHAlaalltGg~v~~i~l~~d~SG~t~s~Gg-----~~~li~~AGY~gp~l~G~~l~~~ 107 (218)
.-.+++.+||+||+++|...|.|+++++++|-++ .+..+.. .++.++.||+....+.+......
T Consensus 36 ~l~~~v~iHElgH~~~A~~~G~~v~~i~l~p~Gg-~~~~~~~~~~~~~~~lIalAGPl~n~~la~~~~~l 104 (208)
T cd06161 36 LLFLSVLLHELGHALVARRYGIRVRSITLLPFGG-VAELEEEPETPKEEFVIALAGPLVSLLLAGLFYLL 104 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccceEEEeeee-eeeeccCCCChhHheeeeeehHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999754 4444431 26899999999999998776544
No 3
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=97.94 E-value=3.9e-05 Score=66.77 Aligned_cols=62 Identities=23% Similarity=0.296 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCceeeEEEEcCCCceeEEecCc-----eeEEeccccchHHHHHHHHHHH
Q 027795 45 LITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGI-----YWLILPAGYLGSSFWGMALVLA 107 (218)
Q Consensus 45 ll~t~~HE~GHAlaalltGg~v~~i~l~~d~SG~t~s~Gg~-----~~li~~AGY~gp~l~G~~l~~~ 107 (218)
.+..++||+||+++|...|.|+++|++.|= +|.+...+.. ++.++.||.....+.+......
T Consensus 53 ~~~v~iHElgH~~~A~~~G~~v~~i~l~p~-Gg~~~~~~~~~~~~~~~~IalAGPl~Nllla~i~~~l 119 (227)
T cd06164 53 FASVLLHELGHSLVARRYGIPVRSITLFLF-GGVARLEREPETPGQEFVIAIAGPLVSLVLALLFLLL 119 (227)
T ss_pred HHHHHHHHHHHHHHHHHcCCeECeEEEEee-eEEEEecCCCCCHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999984 6788776532 5899999999999888765544
No 4
>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.
Probab=97.51 E-value=0.00022 Score=60.24 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhCCceeeEE
Q 027795 46 ITVFLHEASHAIACKLTCGDVEGMQ 70 (218)
Q Consensus 46 l~t~~HE~GHAlaalltGg~v~~i~ 70 (218)
+.+++||+||.++|...|-|++++.
T Consensus 10 ~~v~iHElGH~~~Ar~~Gv~v~~f~ 34 (182)
T cd06163 10 ILIFVHELGHFLVAKLFGVKVEEFS 34 (182)
T ss_pred HHHHHHHHHHHHHHHHcCCeeeEee
Confidence 4688999999999999999999843
No 5
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=97.42 E-value=0.00027 Score=59.80 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceeeEEEEcC-----CCceeEEecC-----ceeEEeccccchHHHHHHHHHHH
Q 027795 44 KLITVFLHEASHAIACKLTCGDVEGMQVHAN-----EGGATQTRGG-----IYWLILPAGYLGSSFWGMALVLA 107 (218)
Q Consensus 44 rll~t~~HE~GHAlaalltGg~v~~i~l~~d-----~SG~t~s~Gg-----~~~li~~AGY~gp~l~G~~l~~~ 107 (218)
-......||+||+++|...|-|.+++++.|+ -++.+..++. .+..++.||.....+.+......
T Consensus 40 l~~~l~iHElgH~~~A~~~G~~~~~~~l~P~~~~G~~G~~~~~~~~~~~~~~~~~IalAGPl~nl~lali~~~~ 113 (183)
T cd06160 40 LLAILGIHEMGHYLAARRHGVKASLPYFIPFPFIGTFGAFIRMRSPIPNRKALFDIALAGPLAGLLLALPVLII 113 (183)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCccceeeeehHhcCcEEEEEEecCCCCChhHhehhhhhHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999998 6777665542 15899999999888777555443
No 6
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=97.30 E-value=0.00025 Score=63.26 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCceeeEEE-----------EcCCCceeEEecCceeEEeccccchHHHHHHHHHHH
Q 027795 45 LITVFLHEASHAIACKLTCGDVEGMQV-----------HANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLA 107 (218)
Q Consensus 45 ll~t~~HE~GHAlaalltGg~v~~i~l-----------~~d~SG~t~s~Gg~~~li~~AGY~gp~l~G~~l~~~ 107 (218)
.++..+||+||+++|...|.+++++.+ .+|+......+-+.+..++.||.....+.+......
T Consensus 118 ~isv~iHElgHa~~Ar~~G~~V~~iGl~l~~ip~Gg~v~~~~~~~~~~~~~~~~~Ia~AGP~~Nlvla~i~~~l 191 (263)
T cd06159 118 VVGVVVHELSHGILARVEGIKVKSGGLLLLIIPPGAFVEPDEEELNKADRRIRLRIFAAGVTANFVVALIAFAL 191 (263)
T ss_pred HHHHHHHHHHHHHHHHHcCCEECchhHHHHhhhcEEEEEecchhhccCChhheeeeeeehHHHHHHHHHHHHHH
Confidence 456889999999999999999999764 223221111111237899999999988777655433
No 7
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=97.30 E-value=0.00014 Score=60.45 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCceeeEEEEc
Q 027795 45 LITVFLHEASHAIACKLTCGDVEGMQVHA 73 (218)
Q Consensus 45 ll~t~~HE~GHAlaalltGg~v~~i~l~~ 73 (218)
.+.+.+||+||+++|...|.|+.+++...
T Consensus 7 ~i~i~~HE~gH~~~a~~~G~~~~~~~~~~ 35 (192)
T PF02163_consen 7 LISIVLHELGHALAARLYGDKVPRFEGGF 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHTTT--B--EEE--
T ss_pred ccccccccccccccccccccccccccccc
Confidence 46788999999999999999999997553
No 8
>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin
Probab=97.20 E-value=0.00023 Score=58.85 Aligned_cols=63 Identities=27% Similarity=0.338 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCceeeEEEEc--------CC--------CceeEEec---------C-ceeEEeccccchHH
Q 027795 45 LITVFLHEASHAIACKLTCGDVEGMQVHA--------NE--------GGATQTRG---------G-IYWLILPAGYLGSS 98 (218)
Q Consensus 45 ll~t~~HE~GHAlaalltGg~v~~i~l~~--------d~--------SG~t~s~G---------g-~~~li~~AGY~gp~ 98 (218)
.+++..||+||+++|...|.|++++.+.. |. +|.+...+ + .+..+..||.....
T Consensus 8 ~i~i~iHE~gH~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ip~gG~~~~~~~~~~~~~~~~~~~~~i~laGPl~nl 87 (180)
T cd05709 8 LISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKPVGENPRAFKKPRWQRLLVALAGPLANL 87 (180)
T ss_pred HHHHHHHHHHHHHHHHHcCCCchheeeeEEECCcCCCCEehHHHHhccCeeccCCCChhhhccchhhhhhhhhhhHHHHH
Confidence 45788999999999999999887666543 32 34443332 1 15788888888888
Q ss_pred HHHHHHHHH
Q 027795 99 FWGMALVLA 107 (218)
Q Consensus 99 l~G~~l~~~ 107 (218)
+.+......
T Consensus 88 lla~i~~~~ 96 (180)
T cd05709 88 LLALLLLLL 96 (180)
T ss_pred HHHHHHHHH
Confidence 888665544
No 9
>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.
Probab=97.02 E-value=0.0011 Score=59.71 Aligned_cols=62 Identities=23% Similarity=0.177 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCceeeEEEEcC---CCceeEEe--------cCceeEEeccccchHHHHHHHHHH
Q 027795 45 LITVFLHEASHAIACKLTCGDVEGMQVHAN---EGGATQTR--------GGIYWLILPAGYLGSSFWGMALVL 106 (218)
Q Consensus 45 ll~t~~HE~GHAlaalltGg~v~~i~l~~d---~SG~t~s~--------Gg~~~li~~AGY~gp~l~G~~l~~ 106 (218)
.++..+||+|||++|...|-+++++.+.+= .+|.+.-. .+.+..++.||.....+.+.....
T Consensus 135 ~isvvvHElgHal~A~~~gi~V~~iGl~l~~~~pGa~ve~~~e~~~~~~~~~~l~Ia~AGp~~NlvLa~i~~~ 207 (277)
T cd06162 135 LISGVVHEMGHGVAAVREQVRVNGFGIFFFIIYPGAYVDLFTDHLNLISPVQQLRIFCAGVWHNFVLGLVGYL 207 (277)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeceEEEeeeeccCeeEEeecccccccCChhhhhheehhhHHHHHHHHHHHHH
Confidence 557889999999999999999999886532 24555542 122678999999999888876543
No 10
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=96.25 E-value=0.006 Score=57.47 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCceeeEEE
Q 027795 45 LITVFLHEASHAIACKLTCGDVEGMQV 71 (218)
Q Consensus 45 ll~t~~HE~GHAlaalltGg~v~~i~l 71 (218)
.+.+++||+||.++|..+|-|++++.+
T Consensus 14 ~~~v~~HE~gH~~~a~~~g~~v~~Fsi 40 (420)
T TIGR00054 14 AVLIFVHELGHFLAARLCGIKVERFSI 40 (420)
T ss_pred HHHHHHHhHHHHHHHHHcCCEEEEEEE
Confidence 356889999999999999999996544
No 11
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=96.14 E-value=0.019 Score=54.54 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhCCceeeEEEEc
Q 027795 46 ITVFLHEASHAIACKLTCGDVEGMQVHA 73 (218)
Q Consensus 46 l~t~~HE~GHAlaalltGg~v~~i~l~~ 73 (218)
+.+++||+||-++|-++|=||+++.+-.
T Consensus 16 ~li~vHElGHfl~Ar~~gv~V~~FsiGf 43 (449)
T PRK10779 16 VLITVHEFGHFWVARRCGVRVERFSIGF 43 (449)
T ss_pred HHHHHHHHHHHHHHHHcCCeeeEEEeec
Confidence 3578999999999999999999999876
No 12
>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.035 Score=52.34 Aligned_cols=28 Identities=36% Similarity=0.525 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCceeeEEEE
Q 027795 45 LITVFLHEASHAIACKLTCGDVEGMQVH 72 (218)
Q Consensus 45 ll~t~~HE~GHAlaalltGg~v~~i~l~ 72 (218)
++..-+||+|||+||.--|=+++++-|+
T Consensus 131 vi~~vvHElGHalAA~segV~vngfgIf 158 (484)
T KOG2921|consen 131 VITVVVHELGHALAAASEGVQVNGFGIF 158 (484)
T ss_pred HHHHHHHHhhHHHHHHhcCceeeeeEEE
Confidence 4556799999999999999999888766
No 13
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=93.95 E-value=0.048 Score=46.76 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhC--CceeeEEEEcCC--CceeEE
Q 027795 46 ITVFLHEASHAIACKLTC--GDVEGMQVHANE--GGATQT 81 (218)
Q Consensus 46 l~t~~HE~GHAlaalltG--g~v~~i~l~~d~--SG~t~s 81 (218)
=-+..||.|||+++.+++ ..+..+.|.|.+ .|.|..
T Consensus 29 ~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~ 68 (213)
T PF01434_consen 29 RRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQF 68 (213)
T ss_dssp HHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEE
T ss_pred HHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEe
Confidence 456899999999999998 479999998865 445544
No 14
>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.
Probab=92.49 E-value=0.13 Score=43.27 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCcee----eEEEEc----CC-------------CceeEEec-------C---ceeEEeccc
Q 027795 45 LITVFLHEASHAIACKLTCGDVE----GMQVHA----NE-------------GGATQTRG-------G---IYWLILPAG 93 (218)
Q Consensus 45 ll~t~~HE~GHAlaalltGg~v~----~i~l~~----d~-------------SG~t~s~G-------g---~~~li~~AG 93 (218)
.++...||.+||++|...|.+-. +++++| |- .|.+.-.. + .+.+++.||
T Consensus 9 ~~~i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp~~hid~~g~l~~~~~~~~~~G~a~p~~~~~~~~~~~r~~~~~valAG 88 (181)
T cd06158 9 LLAITLHEFAHAYVAYRLGDPTARRAGRLTLNPLAHIDPIGTIILPLLLPFLFGWAKPVPVNPRNFKNPRRGMLLVSLAG 88 (181)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHcCceecCcHHhcCcchHHHHHHHHHhCeEEecccccChHhhcccHhhHhhhhhhh
Confidence 45678999999999999998765 466655 21 22221111 0 146788888
Q ss_pred cchHHHHHHHHH
Q 027795 94 YLGSSFWGMALV 105 (218)
Q Consensus 94 Y~gp~l~G~~l~ 105 (218)
.....+.+....
T Consensus 89 P~~n~~la~i~~ 100 (181)
T cd06158 89 PLSNLLLALLFA 100 (181)
T ss_pred HHHHHHHHHHHH
Confidence 887777775543
No 15
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=91.36 E-value=0.12 Score=41.01 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHHH
Q 027795 41 TPFKLITVFLHEASHAI 57 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHAl 57 (218)
.+.-+..|+.||+|||+
T Consensus 101 ~~~~~~~v~~HEiGHaL 117 (154)
T PF00413_consen 101 SGNDLQSVAIHEIGHAL 117 (154)
T ss_dssp SSEEHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhcccccc
Confidence 34467789999999997
No 16
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=90.50 E-value=0.15 Score=41.07 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHH
Q 027795 42 PFKLITVFLHEASHAIA 58 (218)
Q Consensus 42 Pfrll~t~~HE~GHAla 58 (218)
...+..|+.||+||++-
T Consensus 101 ~~~~~~~~~HEiGHaLG 117 (156)
T cd04279 101 AENLQAIALHELGHALG 117 (156)
T ss_pred chHHHHHHHHHhhhhhc
Confidence 34688999999999974
No 17
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=89.61 E-value=0.21 Score=40.06 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHH
Q 027795 44 KLITVFLHEASHAIA 58 (218)
Q Consensus 44 rll~t~~HE~GHAla 58 (218)
....|+.||+|||+-
T Consensus 93 ~~~~~~~HEiGHaLG 107 (165)
T cd04268 93 RLRNTAEHELGHALG 107 (165)
T ss_pred HHHHHHHHHHHHHhc
Confidence 367999999999974
No 18
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=89.14 E-value=0.17 Score=40.92 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHH
Q 027795 41 TPFKLITVFLHEASHAI 57 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHAl 57 (218)
.+..+..|+.||+|||+
T Consensus 103 ~~~~~~~~~~HEiGHaL 119 (157)
T cd04278 103 GGTDLFSVAAHEIGHAL 119 (157)
T ss_pred ccchHHHHHHHHhcccc
Confidence 34578999999999996
No 19
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=89.10 E-value=0.35 Score=45.57 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCce
Q 027795 43 FKLITVFLHEASHAIACKLTCGDV 66 (218)
Q Consensus 43 frll~t~~HE~GHAlaalltGg~v 66 (218)
.+-+.|++||+|||+=.+++..+.
T Consensus 240 ~~~v~tLfHE~GHa~H~~ls~~~~ 263 (458)
T PF01432_consen 240 HDDVETLFHEFGHAMHSLLSRTKY 263 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred hhhHHHHHHHHhHHHHHHHhcccc
Confidence 356899999999999999987654
No 20
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=89.01 E-value=0.25 Score=45.05 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=23.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCCceee
Q 027795 39 LLTPFKLITVFLHEASHAIACKLTCGDVEG 68 (218)
Q Consensus 39 il~Pfrll~t~~HE~GHAlaalltGg~v~~ 68 (218)
.+--+.-+.|++||+|||+=.+++-.+...
T Consensus 148 ~ll~~~~v~tl~HE~GHa~h~~l~~~~~~~ 177 (365)
T cd06258 148 VLLGHDDINTLFHEFGHAVHFLLIQQRYPF 177 (365)
T ss_pred CcCCHHHHHHHHHHHhHHHHHHHhcCCCCc
Confidence 344678999999999999998888665443
No 21
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=87.40 E-value=0.3 Score=40.49 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q 027795 45 LITVFLHEASHAIA 58 (218)
Q Consensus 45 ll~t~~HE~GHAla 58 (218)
...|+.||+|||+-
T Consensus 113 ~~~t~~HEiGHaLG 126 (186)
T cd04277 113 GYQTIIHEIGHALG 126 (186)
T ss_pred hHHHHHHHHHHHhc
Confidence 57899999999984
No 22
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=87.27 E-value=0.33 Score=44.73 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhC
Q 027795 41 TPFKLITVFLHEASHAIACKLTC 63 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHAlaalltG 63 (218)
..++-+.|++||+|||+=..++.
T Consensus 218 ~~~~~v~tl~HE~GHa~h~~~~~ 240 (427)
T cd06459 218 GTLDDVFTLAHELGHAFHSYLSR 240 (427)
T ss_pred CChhhHHHHHHHhhHHHHHHHHc
Confidence 35788999999999999888875
No 23
>PRK10280 dipeptidyl carboxypeptidase II; Provisional
Probab=87.17 E-value=0.42 Score=48.08 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=22.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhCCc
Q 027795 38 ILLTPFKLITVFLHEASHAIACKLTCGD 65 (218)
Q Consensus 38 ~il~Pfrll~t~~HE~GHAlaalltGg~ 65 (218)
|-+-=..-+.|+|||+|||+=.+++--+
T Consensus 457 p~LL~~~eV~TlFHEfGHalH~lls~~~ 484 (681)
T PRK10280 457 PALLLWDDVITLFHEFGHTLHGLFARQR 484 (681)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344457899999999999999998544
No 24
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]
Probab=87.02 E-value=0.39 Score=48.10 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhCCceeeEEEEcCCCceeE
Q 027795 40 LTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQ 80 (218)
Q Consensus 40 l~Pfrll~t~~HE~GHAlaalltGg~v~~i~l~~d~SG~t~ 80 (218)
+.-+.-+.|+||||||++=.+++--+. ++-||.-+
T Consensus 462 Lls~dEV~TLFHEfGHgLH~mlt~v~~------~~vsGt~v 496 (683)
T COG0339 462 LLSHDEVTTLFHEFGHGLHHLLTRVKY------PGVSGTNV 496 (683)
T ss_pred eeeHHHHHHHHHHhhhHHHHHhhcCCc------cccCCCCC
Confidence 334567899999999999999986553 34456553
No 25
>CHL00176 ftsH cell division protein; Validated
Probab=86.41 E-value=0.88 Score=45.47 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhC--CceeeEEEEcC--CCceeEEe
Q 027795 45 LITVFLHEASHAIACKLTC--GDVEGMQVHAN--EGGATQTR 82 (218)
Q Consensus 45 ll~t~~HE~GHAlaalltG--g~v~~i~l~~d--~SG~t~s~ 82 (218)
--.+..||.|||+++.+.+ ..++.+.|.|. ..|.|...
T Consensus 438 ~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~ 479 (638)
T CHL00176 438 KRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFT 479 (638)
T ss_pred HHHHHHHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEec
Confidence 3457999999999998764 67999999887 45666554
No 26
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=86.32 E-value=0.35 Score=38.05 Aligned_cols=12 Identities=42% Similarity=0.537 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 027795 47 TVFLHEASHAIA 58 (218)
Q Consensus 47 ~t~~HE~GHAla 58 (218)
.|+.||+|||+-
T Consensus 88 ~~~~HEigHaLG 99 (140)
T smart00235 88 GVAAHELGHALG 99 (140)
T ss_pred ccHHHHHHHHhc
Confidence 489999999983
No 27
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo
Probab=86.09 E-value=0.62 Score=44.40 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=22.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCCc
Q 027795 39 LLTPFKLITVFLHEASHAIACKLTCGD 65 (218)
Q Consensus 39 il~Pfrll~t~~HE~GHAlaalltGg~ 65 (218)
-+-=+.-+.|++||+|||+=.+++-.+
T Consensus 242 ~lL~~~~v~TLfHEfGHalH~~ls~~~ 268 (458)
T cd06457 242 TLLSPHEVETLFHEMGHAMHSMLGRTE 268 (458)
T ss_pred CCcCHHHHHHHHHHHhHHHHHHHcCCC
Confidence 344567899999999999999999665
No 28
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=85.65 E-value=0.66 Score=43.92 Aligned_cols=28 Identities=25% Similarity=0.314 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCceeeE
Q 027795 42 PFKLITVFLHEASHAIACKLTCGDVEGM 69 (218)
Q Consensus 42 Pfrll~t~~HE~GHAlaalltGg~v~~i 69 (218)
=+.-+.|++||+|||+=.+++..+...+
T Consensus 205 ~~~~v~tLfHEfGHalH~~ls~~~~~~l 232 (422)
T cd06456 205 THDEVTTLFHEFGHALHHLLTDVEYPSL 232 (422)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 5688999999999999999987554433
No 29
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=84.99 E-value=0.76 Score=43.88 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCce
Q 027795 43 FKLITVFLHEASHAIACKLTCGDV 66 (218)
Q Consensus 43 frll~t~~HE~GHAlaalltGg~v 66 (218)
++-+.|++||+|||+=.+++..+-
T Consensus 261 ~~~V~TLfHEfGHalH~~ls~~~~ 284 (472)
T cd06455 261 HDEVETFFHEFGHVIHHLLGRTKY 284 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCc
Confidence 799999999999999999987653
No 30
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=84.62 E-value=0.76 Score=40.14 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027795 44 KLITVFLHEASHAIACKL 61 (218)
Q Consensus 44 rll~t~~HE~GHAlaall 61 (218)
..+-|+.||+|||+...+
T Consensus 91 ~~~~~l~HE~GHAlI~~~ 108 (220)
T PF14247_consen 91 NVLFTLYHELGHALIDDL 108 (220)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 457799999999999874
No 31
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=84.42 E-value=1.4 Score=44.02 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhC--CceeeEEEEcCCC
Q 027795 46 ITVFLHEASHAIACKLTC--GDVEGMQVHANEG 76 (218)
Q Consensus 46 l~t~~HE~GHAlaalltG--g~v~~i~l~~d~S 76 (218)
-.+..||.|||+++.+.. ..++.+.|-|.++
T Consensus 409 ~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~ 441 (644)
T PRK10733 409 ESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGR 441 (644)
T ss_pred HHHHHHHHHHHHHHHHccCCCceeEEEEeccCC
Confidence 568999999999998875 6689999977654
No 32
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=84.13 E-value=0.61 Score=39.34 Aligned_cols=14 Identities=43% Similarity=0.641 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHH
Q 027795 45 LITVFLHEASHAIA 58 (218)
Q Consensus 45 ll~t~~HE~GHAla 58 (218)
...|+.||+|||+-
T Consensus 92 ~~~~i~HElgHaLG 105 (198)
T cd04327 92 FSRVVLHEFGHALG 105 (198)
T ss_pred HHHHHHHHHHHHhc
Confidence 35799999999984
No 33
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Probab=83.36 E-value=0.64 Score=45.52 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 027795 42 PFKLITVFLHEASHAIACKLT 62 (218)
Q Consensus 42 Pfrll~t~~HE~GHAlaallt 62 (218)
.++-+.|++||+|||+=..++
T Consensus 372 ~~~~v~TL~HE~GHa~H~~ls 392 (587)
T TIGR02290 372 SRRDVSTLAHELGHAYHSELA 392 (587)
T ss_pred CchhHHHHHHHhhHHHHHHHH
Confidence 468899999999999988877
No 34
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=83.34 E-value=0.6 Score=35.72 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHH
Q 027795 46 ITVFLHEASHAI 57 (218)
Q Consensus 46 l~t~~HE~GHAl 57 (218)
..|+.||+||.+
T Consensus 108 ~~~~~HEiGH~l 119 (124)
T PF13582_consen 108 VDTFAHEIGHNL 119 (124)
T ss_dssp TTHHHHHHHHHT
T ss_pred ceEeeehhhHhc
Confidence 489999999986
No 35
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=83.22 E-value=0.6 Score=37.32 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 027795 44 KLITVFLHEASHAIAC 59 (218)
Q Consensus 44 rll~t~~HE~GHAlaa 59 (218)
....|+.||+||++--
T Consensus 95 ~~~~~~~HElGH~LGl 110 (167)
T cd00203 95 EGAQTIAHELGHALGF 110 (167)
T ss_pred cchhhHHHHHHHHhCC
Confidence 5688999999999853
No 36
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=83.10 E-value=1.7 Score=41.69 Aligned_cols=41 Identities=27% Similarity=0.203 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh--CCceeeEEEEcCC--CceeEE
Q 027795 41 TPFKLITVFLHEASHAIACKLT--CGDVEGMQVHANE--GGATQT 81 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHAlaallt--Gg~v~~i~l~~d~--SG~t~s 81 (218)
.|-..--+..||.|||+++.+. +.+++.+.|.|.+ .|.+..
T Consensus 307 ~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~ 351 (495)
T TIGR01241 307 SEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQF 351 (495)
T ss_pred cHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEe
Confidence 3444456899999999999988 5789999998754 455543
No 37
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=83.06 E-value=0.89 Score=37.30 Aligned_cols=20 Identities=30% Similarity=0.703 Sum_probs=16.6
Q ss_pred hhhhhHH-HHHHHHHHHHHHH
Q 027795 39 LLTPFKL-ITVFLHEASHAIA 58 (218)
Q Consensus 39 il~Pfrl-l~t~~HE~GHAla 58 (218)
..+||.- +.+..||++|++.
T Consensus 128 ~f~~~~~~lDVvaHEltHGVt 148 (150)
T PF01447_consen 128 IFKPFASSLDVVAHELTHGVT 148 (150)
T ss_dssp SBS-GGG-HHHHHHHHHHHHH
T ss_pred ccccCccccceeeeccccccc
Confidence 4678887 9999999999985
No 38
>PRK10911 oligopeptidase A; Provisional
Probab=83.05 E-value=0.9 Score=45.66 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhC
Q 027795 43 FKLITVFLHEASHAIACKLTC 63 (218)
Q Consensus 43 frll~t~~HE~GHAlaalltG 63 (218)
+.-+.|++||+|||+=.+++-
T Consensus 461 ~~~v~tlfHEfGHalH~~ls~ 481 (680)
T PRK10911 461 HDEVITLFHEFGHGLHHMLTR 481 (680)
T ss_pred HHHHHHHHHHHhHHHHHHHhC
Confidence 488999999999999999885
No 39
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=79.82 E-value=1.4 Score=42.92 Aligned_cols=23 Identities=30% Similarity=0.213 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCC
Q 027795 42 PFKLITVFLHEASHAIACKLTCG 64 (218)
Q Consensus 42 Pfrll~t~~HE~GHAlaalltGg 64 (218)
-++-+.|++||+|||.=..++-.
T Consensus 334 t~~dv~TL~HElGHa~H~~~s~~ 356 (549)
T TIGR02289 334 TSGDIDVLTHEAGHAFHVYESRK 356 (549)
T ss_pred ChhHHHHHHHHhhHHHHHHHhcC
Confidence 45889999999999998887754
No 40
>TIGR00181 pepF oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.
Probab=77.02 E-value=1.7 Score=42.47 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhC
Q 027795 43 FKLITVFLHEASHAIACKLTC 63 (218)
Q Consensus 43 frll~t~~HE~GHAlaalltG 63 (218)
++-+.|++||+|||.=..++.
T Consensus 376 ~~dv~TLaHElGHa~H~~~~~ 396 (591)
T TIGR00181 376 LNSVFTLAHELGHSMHSYFSS 396 (591)
T ss_pred cchHHHHHHHhhhHHHHHHHc
Confidence 488999999999999888775
No 41
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.
Probab=76.79 E-value=1.1 Score=40.08 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027795 44 KLITVFLHEASHAIACKL 61 (218)
Q Consensus 44 rll~t~~HE~GHAlaall 61 (218)
.---+++||+||+++.|.
T Consensus 215 ~~~~v~vHE~GHsf~~La 232 (264)
T PF09471_consen 215 SFKQVVVHEFGHSFGGLA 232 (264)
T ss_dssp THHHHHHHHHHHHTT---
T ss_pred cccceeeeeccccccccc
Confidence 445789999999998773
No 42
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=76.38 E-value=1.3 Score=36.94 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHH
Q 027795 46 ITVFLHEASHAIAC 59 (218)
Q Consensus 46 l~t~~HE~GHAlaa 59 (218)
..|+.||+|||+--
T Consensus 75 ~g~v~HE~~HalG~ 88 (180)
T cd04280 75 LGTIVHELMHALGF 88 (180)
T ss_pred CchhHHHHHHHhcC
Confidence 58999999999754
No 43
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=75.58 E-value=1.5 Score=38.09 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 027795 41 TPFKLITVFLHEASHAIA 58 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHAla 58 (218)
.+.|=.=|++||+||++.
T Consensus 68 ~~~r~rFtlAHELGH~ll 85 (213)
T COG2856 68 SLERKRFTLAHELGHALL 85 (213)
T ss_pred CHHHHHHHHHHHHhHHHh
Confidence 344556689999999973
No 44
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=74.95 E-value=1.7 Score=35.93 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q 027795 45 LITVFLHEASHAIACKLTCG 64 (218)
Q Consensus 45 ll~t~~HE~GHAlaalltGg 64 (218)
-..|++||+||.+-|-=++.
T Consensus 111 ~~~~~aHElGH~lGa~Hd~~ 130 (173)
T PF13574_consen 111 GIDTFAHELGHQLGAPHDFD 130 (173)
T ss_dssp HHHHHHHHHHHHHT---SSS
T ss_pred eeeeehhhhHhhcCCCCCCC
Confidence 45679999999998876666
No 45
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=74.68 E-value=1.6 Score=37.31 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCC
Q 027795 44 KLITVFLHEASHAIACKLTCG 64 (218)
Q Consensus 44 rll~t~~HE~GHAlaalltGg 64 (218)
...-|+.||+||.+-+-=.+.
T Consensus 136 ~~~~~~aHEiGH~lGl~H~~~ 156 (206)
T PF13583_consen 136 NGYQTFAHEIGHNLGLRHDFD 156 (206)
T ss_pred ccchHHHHHHHHHhcCCCCcc
Confidence 344779999999997765444
No 46
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=73.69 E-value=1.8 Score=36.62 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHH
Q 027795 46 ITVFLHEASHAIAC 59 (218)
Q Consensus 46 l~t~~HE~GHAlaa 59 (218)
..|+.||+|||+--
T Consensus 78 ~G~i~HEl~HaLG~ 91 (182)
T cd04283 78 KGIIQHELLHALGF 91 (182)
T ss_pred cchHHHHHHHHhCC
Confidence 57999999999853
No 47
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=73.43 E-value=3.1 Score=33.24 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 027795 42 PFKLITVFLHEASHAIACKLT 62 (218)
Q Consensus 42 Pfrll~t~~HE~GHAlaallt 62 (218)
+-.+..|+.|||.|+++-...
T Consensus 57 ~~~~~~tL~HEm~H~~~~~~~ 77 (157)
T PF10263_consen 57 EEELIDTLLHEMAHAAAYVFG 77 (157)
T ss_pred HHHHHHHHHHHHHHHHhhhcc
Confidence 448899999999999997763
No 48
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=72.88 E-value=2.5 Score=34.94 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 027795 41 TPFKLITVFLHEASHAIACK 60 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHAlaal 60 (218)
.+..-..|+.||+||.+-+-
T Consensus 138 ~~~~~~~~~AHEiGH~lGa~ 157 (196)
T PF13688_consen 138 PTYNGAITFAHEIGHNLGAP 157 (196)
T ss_dssp -HHHHHHHHHHHHHHHTT--
T ss_pred CCCceehhhHHhHHHhcCCC
Confidence 45667789999999998776
No 49
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=72.79 E-value=2.8 Score=41.81 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=22.9
Q ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 027795 32 LALWRTILLTPFKLITVFLHEASHAIACKLT 62 (218)
Q Consensus 32 ~~lW~~~il~Pfrll~t~~HE~GHAlaallt 62 (218)
...|.-|-.--+.-+.|+|||||||.=.++-
T Consensus 466 rss~~s~t~L~~~~vetLFHEmGHAMHSmLG 496 (704)
T KOG2090|consen 466 RSSQSSPTFLSLSEVETLFHEMGHAMHSMLG 496 (704)
T ss_pred ccccCCCcccCHHHHHHHHHHHHHHHHHHhc
Confidence 4455555444456789999999999988863
No 50
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=72.76 E-value=3 Score=30.61 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 027795 40 LTPFKLITVFLHEASHAIACK 60 (218)
Q Consensus 40 l~Pfrll~t~~HE~GHAlaal 60 (218)
..|.+---|++||+||.+---
T Consensus 37 ~~~~~~~f~laHELgH~~~~~ 57 (122)
T PF06114_consen 37 LSPERQRFTLAHELGHILLHH 57 (122)
T ss_dssp S-HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhh
Confidence 346677789999999987643
No 51
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=72.12 E-value=2.3 Score=37.24 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH
Q 027795 45 LITVFLHEASHAIAC 59 (218)
Q Consensus 45 ll~t~~HE~GHAlaa 59 (218)
...|+.||+||-+-.
T Consensus 167 ~a~t~AHElGHnlGm 181 (244)
T cd04270 167 SDLVTAHELGHNFGS 181 (244)
T ss_pred HHHHHHHHHHHhcCC
Confidence 458999999999754
No 52
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=72.11 E-value=2.5 Score=35.56 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 027795 45 LITVFLHEASHAIACK 60 (218)
Q Consensus 45 ll~t~~HE~GHAlaal 60 (218)
...|+.||+|||+--.
T Consensus 79 ~~~~i~HEl~HaLG~~ 94 (191)
T PF01400_consen 79 SVGTILHELGHALGFW 94 (191)
T ss_dssp SHHHHHHHHHHHHTB-
T ss_pred CccchHHHHHHHHhhh
Confidence 3568999999998533
No 53
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=70.70 E-value=2.3 Score=36.51 Aligned_cols=13 Identities=31% Similarity=0.624 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHH
Q 027795 46 ITVFLHEASHAIA 58 (218)
Q Consensus 46 l~t~~HE~GHAla 58 (218)
..|+.||++||+-
T Consensus 88 ~Gti~HEl~HaLG 100 (200)
T cd04281 88 FGIVVHELGHVIG 100 (200)
T ss_pred CchHHHHHHHHhc
Confidence 5799999999984
No 54
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=70.50 E-value=2.8 Score=34.72 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q 027795 42 PFKLITVFLHEASHAIA 58 (218)
Q Consensus 42 Pfrll~t~~HE~GHAla 58 (218)
++....+++||+||-+-
T Consensus 128 ~~~~a~~~AHElGH~lG 144 (194)
T cd04269 128 LLLFAVTMAHELGHNLG 144 (194)
T ss_pred hHHHHHHHHHHHHhhcC
Confidence 45678999999999874
No 55
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=70.23 E-value=2.3 Score=34.82 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 027795 42 PFKLITVFLHEASHAI 57 (218)
Q Consensus 42 Pfrll~t~~HE~GHAl 57 (218)
+...-.|+.||+||-+
T Consensus 66 ~~~~g~TltHEvGH~L 81 (154)
T PF05572_consen 66 QYNFGKTLTHEVGHWL 81 (154)
T ss_dssp TS-SSHHHHHHHHHHT
T ss_pred ccccccchhhhhhhhh
Confidence 3445689999999975
No 56
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=70.12 E-value=3.2 Score=41.20 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceee
Q 027795 44 KLITVFLHEASHAIACKLTCGDVEG 68 (218)
Q Consensus 44 rll~t~~HE~GHAlaalltGg~v~~ 68 (218)
+-+-|++||+||+.-..+++.+-.-
T Consensus 379 ~dV~TLaHElGHs~Hs~~s~~~qp~ 403 (598)
T COG1164 379 RDVFTLAHELGHSVHSYFSRKHQPY 403 (598)
T ss_pred hHHHHHHHHccHHHHHHHHhccCCc
Confidence 8899999999999999998876543
No 57
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=69.02 E-value=2.3 Score=36.96 Aligned_cols=11 Identities=45% Similarity=0.682 Sum_probs=9.6
Q ss_pred HHHHHHHHHHH
Q 027795 47 TVFLHEASHAI 57 (218)
Q Consensus 47 ~t~~HE~GHAl 57 (218)
-++.||+||.+
T Consensus 135 hvi~HEiGH~I 145 (211)
T PF12388_consen 135 HVITHEIGHCI 145 (211)
T ss_pred HHHHHHhhhhc
Confidence 38999999986
No 58
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=68.84 E-value=1.9 Score=35.64 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhC
Q 027795 42 PFKLITVFLHEASHAIACKLTC 63 (218)
Q Consensus 42 Pfrll~t~~HE~GHAlaalltG 63 (218)
|+....|++||+||.+-.-=.+
T Consensus 130 ~~~~~~~~aHElGH~lG~~HD~ 151 (192)
T cd04267 130 TLLTALTMAHELGHNLGAEHDG 151 (192)
T ss_pred ceeehhhhhhhHHhhcCCcCCC
Confidence 6677889999999998654443
No 59
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.
Probab=64.86 E-value=3.4 Score=36.29 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 027795 46 ITVFLHEASHAIA 58 (218)
Q Consensus 46 l~t~~HE~GHAla 58 (218)
..|++||++||+-
T Consensus 121 ~Gti~HEl~HalG 133 (230)
T cd04282 121 KATVEHEFLHALG 133 (230)
T ss_pred CchHHHHHHHHhC
Confidence 5799999999973
No 60
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=64.25 E-value=6.5 Score=31.58 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027795 44 KLITVFLHEASHAIACKL 61 (218)
Q Consensus 44 rll~t~~HE~GHAlaall 61 (218)
.+..|+.|||.|+.+-..
T Consensus 58 ~l~~~l~HEm~H~~~~~~ 75 (146)
T smart00731 58 RLRETLLHELCHAALYLF 75 (146)
T ss_pred HHHhhHHHHHHHHHHHHh
Confidence 566799999999999885
No 61
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=63.80 E-value=4.7 Score=38.14 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 027795 42 PFKLITVFLHEASHAIACK 60 (218)
Q Consensus 42 Pfrll~t~~HE~GHAlaal 60 (218)
|.+-+-|.+||+|||+=-.
T Consensus 156 ~~~~l~t~iHE~GHalye~ 174 (396)
T cd06460 156 FRSALFSTIHETGHALYEQ 174 (396)
T ss_pred hHHHHHHHHHHhhHHHHHh
Confidence 4677789999999998776
No 62
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=63.12 E-value=4.5 Score=35.50 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q 027795 45 LITVFLHEASHAIA 58 (218)
Q Consensus 45 ll~t~~HE~GHAla 58 (218)
-+.+.+||-|||+=
T Consensus 89 AvaVAAHEvGHAiQ 102 (222)
T PF04298_consen 89 AVAVAAHEVGHAIQ 102 (222)
T ss_pred HHHHHHHHHhHHHh
Confidence 45678999999973
No 63
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=61.02 E-value=9.3 Score=28.19 Aligned_cols=23 Identities=26% Similarity=0.120 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCC
Q 027795 42 PFKLITVFLHEASHAIACKLTCG 64 (218)
Q Consensus 42 Pfrll~t~~HE~GHAlaalltGg 64 (218)
+-....++.||+.|.+..-..|.
T Consensus 22 ~~~~~~~l~HE~~H~~~~~~~~~ 44 (128)
T PF13485_consen 22 EDWLDRVLAHELAHQWFGNYFGG 44 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 33456899999999998888765
No 64
>PF14891 Peptidase_M91: Effector protein
Probab=60.64 E-value=6.8 Score=32.45 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCc
Q 027795 41 TPFKLITVFLHEASHAIACKLTCGD 65 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHAlaalltGg~ 65 (218)
.+..=++++.|||.||.=.+ .|..
T Consensus 99 ~~~~p~v~L~HEL~HA~~~~-~Gt~ 122 (174)
T PF14891_consen 99 SPRPPFVVLYHELIHAYDYM-NGTM 122 (174)
T ss_pred hhHHHHHHHHHHHHHHHHHH-CCCC
Confidence 34566899999999999876 4433
No 65
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=60.46 E-value=6.1 Score=32.88 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHH
Q 027795 41 TPFKLITVFLHEASHAI 57 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHAl 57 (218)
.++....+++||+||.+
T Consensus 127 ~~~~~a~~~AHelGH~l 143 (199)
T PF01421_consen 127 SGLSFAVIIAHELGHNL 143 (199)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 46778899999999974
No 66
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=60.06 E-value=8 Score=38.57 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhCC--ceeeEEEEcCC--CceeEE
Q 027795 47 TVFLHEASHAIACKLTCG--DVEGMQVHANE--GGATQT 81 (218)
Q Consensus 47 ~t~~HE~GHAlaalltGg--~v~~i~l~~d~--SG~t~s 81 (218)
.|.-||.|||+++.++-+ .|+.+.+-|.+ .|.|..
T Consensus 408 ~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~~ 446 (596)
T COG0465 408 ITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTLF 446 (596)
T ss_pred chHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchhc
Confidence 578899999999999876 89999999987 344544
No 67
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=59.61 E-value=5.7 Score=32.14 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=8.9
Q ss_pred HHHHHHHHHH
Q 027795 48 VFLHEASHAI 57 (218)
Q Consensus 48 t~~HE~GHAl 57 (218)
+..||+||.+
T Consensus 80 IaaHE~GHiL 89 (132)
T PF02031_consen 80 IAAHELGHIL 89 (132)
T ss_dssp HHHHHHHHHH
T ss_pred eeeehhcccc
Confidence 6789999987
No 68
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=59.04 E-value=6.6 Score=33.61 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q 027795 44 KLITVFLHEASHAIA 58 (218)
Q Consensus 44 rll~t~~HE~GHAla 58 (218)
.+-.++.||.||++-
T Consensus 115 ~~~~~~~he~gh~lG 129 (197)
T cd04276 115 SLRYLLAHEVGHTLG 129 (197)
T ss_pred HHHHHHHHHHHHHhc
Confidence 466799999999973
No 69
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.87 E-value=1.6 Score=43.32 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=32.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCC--ceeeEEEEcCCCceeEE
Q 027795 39 LLTPFKLITVFLHEASHAIACKLTCG--DVEGMQVHANEGGATQT 81 (218)
Q Consensus 39 il~Pfrll~t~~HE~GHAlaalltGg--~v~~i~l~~d~SG~t~s 81 (218)
++.+=..-.|..||.|||++|+-|-+ .++.-.|-|-++-+-.+
T Consensus 551 ~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t 595 (752)
T KOG0734|consen 551 VIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHT 595 (752)
T ss_pred ccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccce
Confidence 34444566799999999999999976 57788888877754444
No 70
>KOG3854 consensus SPRT-like metalloprotease [Function unknown]
Probab=57.37 E-value=8 Score=37.50 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027795 44 KLITVFLHEASHAIACKL 61 (218)
Q Consensus 44 rll~t~~HE~GHAlaall 61 (218)
|+-.|+.|||+||.+=+.
T Consensus 350 Rir~TLiHEmCHaAaWv~ 367 (505)
T KOG3854|consen 350 RIRDTLIHEMCHAAAWVF 367 (505)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 777899999999865443
No 71
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=57.34 E-value=2.5 Score=37.92 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH
Q 027795 46 ITVFLHEASHAI 57 (218)
Q Consensus 46 l~t~~HE~GHAl 57 (218)
+.|++||+||.+
T Consensus 166 igv~~HE~gH~l 177 (286)
T TIGR03296 166 VGVIAHELGHDL 177 (286)
T ss_pred eeeeehhhhccc
Confidence 789999999943
No 72
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=57.09 E-value=6.1 Score=33.64 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027795 43 FKLITVFLHEASHAIAC 59 (218)
Q Consensus 43 frll~t~~HE~GHAlaa 59 (218)
+.-..|++||+||.+-.
T Consensus 143 ~~~~~~~AHElGH~lG~ 159 (220)
T cd04272 143 YYGVYTMTHELAHLLGA 159 (220)
T ss_pred cccHHHHHHHHHHHhCC
Confidence 35579999999998743
No 73
>KOG3714 consensus Meprin A metalloprotease [Posttranslational modification, protein turnover, chaperones]
Probab=56.61 E-value=5.4 Score=37.72 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q 027795 46 ITVFLHEASHAIACK 60 (218)
Q Consensus 46 l~t~~HE~GHAlaal 60 (218)
..|++||++||+--.
T Consensus 160 ~G~i~HEl~HaLGf~ 174 (411)
T KOG3714|consen 160 FGTIVHELMHALGFW 174 (411)
T ss_pred CchhHHHHHHHhhhh
Confidence 678999999998544
No 74
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=55.81 E-value=4 Score=35.45 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHH
Q 027795 47 TVFLHEASHAIA 58 (218)
Q Consensus 47 ~t~~HE~GHAla 58 (218)
.|++||+||-+-
T Consensus 147 ~t~AHElGHnLG 158 (228)
T cd04271 147 QVFAHEIGHTFG 158 (228)
T ss_pred eehhhhhhhhcC
Confidence 599999999874
No 75
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=55.78 E-value=13 Score=33.64 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhCCceeeEEEEcCC
Q 027795 46 ITVFLHEASHAIACKLTCGDVEGMQVHANE 75 (218)
Q Consensus 46 l~t~~HE~GHAlaalltGg~v~~i~l~~d~ 75 (218)
...++||.||-+.+-.+|.++.++.+-.-.
T Consensus 14 ~lv~~he~gh~~~a~~~~~~v~~f~ig~g~ 43 (375)
T COG0750 14 VLVFVHELGHFWVARRCGVKVERFSIGFGP 43 (375)
T ss_pred HHHHHHHHhhHHHHHhcCceeEEEEeccCc
Confidence 346789999999999999999999887654
No 76
>cd06461 M2_ACE Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem active sites with distinct catalytic properties, whereas germinal ACE, the function of which is largely unknown, has just a single active site. Recently, an ACE homolog, ACE2, has been identified in humans that differs from ACE; it preferentially removes carboxy-terminal hydrophobic or basic amino acids and appears to be important in cardiac function. ACE homologs (also known as members of the M2 gluzincin family) have been found in a wide variety of species, including those that neither h
Probab=53.91 E-value=8.7 Score=37.22 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 027795 43 FKLITVFLHEASHAIACKLT 62 (218)
Q Consensus 43 frll~t~~HE~GHAlaallt 62 (218)
..-+.|+.||+||+. --+.
T Consensus 245 ~~D~~t~~HE~GH~~-yy~~ 263 (477)
T cd06461 245 MEDFVTVHHEMGHIQ-YYLQ 263 (477)
T ss_pred HHHHHHHHHHHHHHH-HHHH
Confidence 467899999999999 4444
No 77
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=53.14 E-value=93 Score=25.84 Aligned_cols=51 Identities=4% Similarity=-0.046 Sum_probs=29.2
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhhHHhcCCCCCChHHHHHHHcCCCccc
Q 027795 164 RYVILFIGICLSCCIFSSLLNELTSALFLISLVKRSVANVYSENYRCNEQF 214 (218)
Q Consensus 164 ~~~llflGv~~~~ysv~dl~~~~~~~~~~~~~~~~SDA~~LA~lt~~Pa~~ 214 (218)
.+.+....+...+...|--++.+..+...+.+....|.+.+|+.+++|.+.
T Consensus 64 ~~yl~ial~nAvlLI~WA~YN~~RF~~eRR~~~~~l~~dElA~sF~l~~e~ 114 (153)
T PRK14584 64 ALYLAIAAFNAVLLIIWAKYNQVRFQVERRGHRPDLDDDELASSFALSPEL 114 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCChHHHHHHcCCCHHH
Confidence 333333333333344555555444433223456777999999999999764
No 78
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=51.72 E-value=10 Score=31.51 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHH
Q 027795 41 TPFKLITVFLHEASHAI 57 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHAl 57 (218)
.+=-+..++.||+||..
T Consensus 85 ~~~el~aVlaHElgH~~ 101 (226)
T PF01435_consen 85 SEDELAAVLAHELGHIK 101 (226)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 44578899999999975
No 79
>PRK03982 heat shock protein HtpX; Provisional
Probab=49.67 E-value=10 Score=33.88 Aligned_cols=17 Identities=29% Similarity=0.258 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHH
Q 027795 41 TPFKLITVFLHEASHAI 57 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHAl 57 (218)
.+=-+..++.||+||.-
T Consensus 121 ~~~El~AVlAHElgHi~ 137 (288)
T PRK03982 121 NEDELEGVIAHELTHIK 137 (288)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45578999999999974
No 80
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=48.31 E-value=8.5 Score=35.23 Aligned_cols=18 Identities=33% Similarity=0.624 Sum_probs=14.2
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 027795 40 LTPFKLITVFLHEASHAI 57 (218)
Q Consensus 40 l~Pfrll~t~~HE~GHAl 57 (218)
+-|+..=.|.+||++|-.
T Consensus 191 ~p~~~~P~T~~HElAHq~ 208 (318)
T PF12725_consen 191 LPPYSLPFTICHELAHQL 208 (318)
T ss_pred CCcccccHHHHHHHHHHh
Confidence 456677789999999963
No 81
>PRK03001 M48 family peptidase; Provisional
Probab=48.23 E-value=11 Score=33.56 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHH
Q 027795 41 TPFKLITVFLHEASHAI 57 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHAl 57 (218)
.+=-+..++.||+||.-
T Consensus 120 ~~~El~aVlAHElgHi~ 136 (283)
T PRK03001 120 SEREIRGVMAHELAHVK 136 (283)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 44578899999999974
No 82
>PF14521 Aspzincin_M35: Lysine-specific metallo-endopeptidase ; PDB: 2X3C_A 2X3A_A 2X3B_A 1GE7_B 1GE6_A 1GE5_A 1G12_A.
Probab=48.18 E-value=11 Score=30.46 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=15.3
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHH
Q 027795 33 ALWRTILLTPFKLITVFLHEASH 55 (218)
Q Consensus 33 ~lW~~~il~Pfrll~t~~HE~GH 55 (218)
.+|+.|....-.-..|++||+.|
T Consensus 84 ~F~~~p~~g~~Sk~~TLiHE~SH 106 (148)
T PF14521_consen 84 AFFSAPTTGKDSKEGTLIHEWSH 106 (148)
T ss_dssp HHHHS-SSSTT-HHHHHHHHHHH
T ss_pred hhcCCCCCCCCchHHHHHHhhhh
Confidence 35665544434568999999999
No 83
>PF10462 Peptidase_M66: Peptidase M66; InterPro: IPR019503 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of metallopeptidases belonging to MEROPS peptidase family M66 (StcE peptidase, clan MA). The StcE peptidase is a virulence factor found in Shiga toxigenic Escherichia coli strains. StcE peptidase cleaves C1 esterase inhibitor []. The SwissProt proteins in this entry have been name "Dictomallein". ; GO: 0004222 metalloendopeptidase activity; PDB: 3UJZ_A.
Probab=47.15 E-value=9.4 Score=35.00 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q 027795 46 ITVFLHEASHAIA 58 (218)
Q Consensus 46 l~t~~HE~GHAla 58 (218)
-.++.||+||+.-
T Consensus 194 ~~~f~HE~GH~~G 206 (305)
T PF10462_consen 194 GNEFSHELGHNFG 206 (305)
T ss_dssp HHHHHHHHHHTTT
T ss_pred cceeehhhhhhcC
Confidence 4689999999863
No 84
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=46.87 E-value=12 Score=32.71 Aligned_cols=19 Identities=37% Similarity=0.396 Sum_probs=14.9
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q 027795 39 LLTPFKLITVFLHEASHAI 57 (218)
Q Consensus 39 il~Pfrll~t~~HE~GHAl 57 (218)
.+.+=-+-.++.||+||..
T Consensus 151 ~l~~dEl~aVlaHElgHi~ 169 (302)
T COG0501 151 LLNDDELEAVLAHELGHIK 169 (302)
T ss_pred hCCHHHHHHHHHHHHHHHh
Confidence 3455578899999999974
No 85
>PRK03072 heat shock protein HtpX; Provisional
Probab=46.55 E-value=12 Score=33.58 Aligned_cols=17 Identities=41% Similarity=0.397 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHHHHH
Q 027795 40 LTPFKLITVFLHEASHA 56 (218)
Q Consensus 40 l~Pfrll~t~~HE~GHA 56 (218)
+.+=-+..++.||+||-
T Consensus 122 l~~~El~aVlAHElgHi 138 (288)
T PRK03072 122 LNERELRGVLGHELSHV 138 (288)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 35557899999999994
No 86
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].
Probab=46.05 E-value=10 Score=34.66 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCC
Q 027795 44 KLITVFLHEASHAIACKLTCG 64 (218)
Q Consensus 44 rll~t~~HE~GHAlaalltGg 64 (218)
.-..|++||+||=+- |--.+
T Consensus 149 ~~~~~~~HElgHN~G-L~Ha~ 168 (314)
T PF05548_consen 149 QDWATIMHELGHNLG-LWHAG 168 (314)
T ss_pred ccHHHHHHHhhhhcc-ccccC
Confidence 345799999999884 44443
No 87
>PF02128 Peptidase_M36: Fungalysin metallopeptidase (M36); InterPro: IPR001842 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M36 (fungalysin family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Fungalysin is produced by fungi, Aspergillus and other species, to aid degradation of host lung cell walls on infection. The enzyme is a 42kDa single chain protein, with a pH optimum of 7.5-8.0 and optimal temperature of 60 celcius [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0005615 extracellular space
Probab=45.79 E-value=3 Score=39.25 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhCCceeeEEEEcCC
Q 027795 47 TVFLHEASHAIACKLTCGDVEGMQVHANE 75 (218)
Q Consensus 47 ~t~~HE~GHAlaalltGg~v~~i~l~~d~ 75 (218)
.+++||.||++..=|+||.-.+=+|...+
T Consensus 187 ~Ii~HEy~HGiSnRLvgG~~~s~cL~~~e 215 (378)
T PF02128_consen 187 GIIAHEYGHGISNRLVGGPANSSCLQNLE 215 (378)
T ss_pred CeeEEeecccccccccCCCcccccccccc
Confidence 46889999999999999977665555433
No 88
>PRK01345 heat shock protein HtpX; Provisional
Probab=45.23 E-value=13 Score=33.95 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHH
Q 027795 41 TPFKLITVFLHEASHAI 57 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHAl 57 (218)
.+=-+..++.||+||--
T Consensus 120 ~~dEL~aVlAHElgHi~ 136 (317)
T PRK01345 120 SPEEVAGVMAHELAHVK 136 (317)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34478899999999963
No 89
>PF07998 Peptidase_M54: Peptidase family M54; InterPro: IPR012962 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry represents zinc-dependent peptidases belonging to the MEROPS peptidase family M54, more commonly known as the archaemetzincins. The family has a wide taxonomic distribution, being found in archaea, bacteria and eukaryotes. Two human homologues have been characterised []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 3LMC_A 2XHQ_A 2X7M_A.
Probab=45.07 E-value=15 Score=31.60 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHH
Q 027795 42 PFKLITVFLHEASHAI 57 (218)
Q Consensus 42 Pfrll~t~~HE~GHAl 57 (218)
--|..-+.+||.||.+
T Consensus 142 ~~R~~Kea~HElGH~~ 157 (194)
T PF07998_consen 142 LERVCKEAVHELGHLF 157 (194)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3588899999999975
No 90
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=45.05 E-value=20 Score=32.65 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 027795 41 TPFKLITVFLHEASHAIACKL 61 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHAlaall 61 (218)
-||-..-++.||.||.+=.++
T Consensus 166 G~~a~ayVlAHEyGHHVQ~l~ 186 (292)
T PF04228_consen 166 GDFAQAYVLAHEYGHHVQNLL 186 (292)
T ss_pred cHHHHHHHHHHHHHHHHHHHh
Confidence 477888899999999998775
No 91
>COG5549 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=43.40 E-value=12 Score=32.75 Aligned_cols=19 Identities=26% Similarity=0.163 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 027795 40 LTPFKLITVFLHEASHAIA 58 (218)
Q Consensus 40 l~Pfrll~t~~HE~GHAla 58 (218)
..|-++..|.-||.|||+-
T Consensus 182 ~~~e~L~~tarhElGhaLg 200 (236)
T COG5549 182 ELRENLNPTARHELGHALG 200 (236)
T ss_pred cchhhhhHHHHHhhcchhe
Confidence 3467899999999999973
No 92
>PRK04897 heat shock protein HtpX; Provisional
Probab=43.35 E-value=14 Score=33.22 Aligned_cols=16 Identities=38% Similarity=0.279 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHH
Q 027795 41 TPFKLITVFLHEASHA 56 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHA 56 (218)
.+=-+..++.||+||-
T Consensus 133 ~~~El~aVlAHElgHi 148 (298)
T PRK04897 133 NREELEGVIGHEISHI 148 (298)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3457889999999994
No 93
>PRK05457 heat shock protein HtpX; Provisional
Probab=41.70 E-value=16 Score=32.80 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHHHHHHH
Q 027795 40 LTPFKLITVFLHEASHA 56 (218)
Q Consensus 40 l~Pfrll~t~~HE~GHA 56 (218)
+.+=.+..++.||+||-
T Consensus 129 L~~~El~aVlAHElgHi 145 (284)
T PRK05457 129 MSRDEVEAVLAHEISHI 145 (284)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34557889999999995
No 94
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=41.38 E-value=18 Score=30.54 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHH
Q 027795 43 FKLITVFLHEASHAI 57 (218)
Q Consensus 43 frll~t~~HE~GHAl 57 (218)
-|..-+..||+||.+
T Consensus 123 ~R~~k~~~HElGH~l 137 (179)
T PRK13267 123 ERVRKEVTHELGHTL 137 (179)
T ss_pred HHHHHHHHHHHHHHc
Confidence 377778899999974
No 95
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=41.03 E-value=5.1 Score=33.79 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 027795 43 FKLITVFLHEASHAIA 58 (218)
Q Consensus 43 frll~t~~HE~GHAla 58 (218)
+....|+.||+||.+-
T Consensus 138 ~~~a~~~aHElGH~LG 153 (207)
T cd04273 138 LSSAFTIAHELGHVLG 153 (207)
T ss_pred ceeEEeeeeechhhcC
Confidence 3456789999999874
No 96
>KOG2089 consensus Metalloendopeptidase family - saccharolysin & thimet oligopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=40.59 E-value=24 Score=35.70 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=24.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCCceeeE
Q 027795 39 LLTPFKLITVFLHEASHAIACKLTCGDVEGM 69 (218)
Q Consensus 39 il~Pfrll~t~~HE~GHAlaalltGg~v~~i 69 (218)
-+--+.-++|.|||+||++==+++--....+
T Consensus 489 sll~~~ev~t~FheFGh~~q~ll~Qa~~~~f 519 (718)
T KOG2089|consen 489 SLLGHDEVETLFHEFGHVLQHLLTQADFARF 519 (718)
T ss_pred CccchHHHHHHHHHHhHHHHHHHhcCccccc
Confidence 4445677999999999999999987655444
No 97
>KOG1565 consensus Gelatinase A and related matrix metalloproteases [Posttranslational modification, protein turnover, chaperones; Extracellular structures]
Probab=40.10 E-value=11 Score=36.46 Aligned_cols=33 Identities=21% Similarity=0.133 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCceeeEEEEcCCC
Q 027795 42 PFKLITVFLHEASHAIACKLTCGDVEGMQVHANEG 76 (218)
Q Consensus 42 Pfrll~t~~HE~GHAlaalltGg~v~~i~l~~d~S 76 (218)
..-+..|.+||.||++- |...+..+.-++|+=.
T Consensus 208 g~~l~~Va~HEiGH~LG--L~HS~~~~aiM~P~y~ 240 (469)
T KOG1565|consen 208 GVDLFLVAAHEIGHALG--LGHSSDPDAIMYPFYQ 240 (469)
T ss_pred cchhHHHhhhhcccccc--cCCCCCcccccccccc
Confidence 44677899999999973 3334555555555443
No 98
>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily. The pregnancy-associated plasma protein A (PAPP-A or pappalysin-1) cleaves insulin-like growth factor-binding proteins 4 and 5, thereby promoting cell growth by releasing bound growth factor. This model includes pappalysins and related metalloprotease domains from all three kingdoms of life. The three-dimensional structure of an archaeal representative, ulilysin, has been solved.
Probab=39.99 E-value=4.1 Score=35.50 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHH
Q 027795 42 PFKLITVFLHEASHAIA 58 (218)
Q Consensus 42 Pfrll~t~~HE~GHAla 58 (218)
|.-.-.|+.||.||.+-
T Consensus 134 ~~n~g~t~~HEvGH~lG 150 (225)
T cd04275 134 PYNLGDTATHEVGHWLG 150 (225)
T ss_pred cccccceeEEeccceee
Confidence 45566799999999864
No 99
>PRK02391 heat shock protein HtpX; Provisional
Probab=39.55 E-value=18 Score=32.70 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHH
Q 027795 41 TPFKLITVFLHEASHA 56 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHA 56 (218)
.+=.+..++.||+||.
T Consensus 129 ~~~El~aVlaHElgHi 144 (296)
T PRK02391 129 DPDELEAVLAHELSHV 144 (296)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4557899999999994
No 100
>PF13994 PgaD: PgaD-like protein
Probab=38.71 E-value=2e+02 Score=22.85 Aligned_cols=51 Identities=10% Similarity=-0.030 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHhhHHhcCC-CCCChHHHHHHHcCCCcc
Q 027795 163 LRYVILFIGICLSCCIFSSLLNELTSALFLISL-VKRSVANVYSENYRCNEQ 213 (218)
Q Consensus 163 ~~~~llflGv~~~~ysv~dl~~~~~~~~~~~~~-~~~SDA~~LA~lt~~Pa~ 213 (218)
+...+..++....+.-.|-.++.+..+...+|+ .++.|.+.+|+..++|++
T Consensus 64 l~~y~~i~~~~a~~Li~Wa~yn~~Rf~~~~rr~~~~~~~~~elA~~f~l~~~ 115 (138)
T PF13994_consen 64 LQIYLLIALVNAVILILWAKYNRLRFRGRRRRRRPPPVSDEELARSFGLSPE 115 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccCCCCCCHHHHHHHcCCCHH
Confidence 344444455555555566666654432222222 233899999999999874
No 101
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=38.32 E-value=19 Score=31.37 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=14.3
Q ss_pred HH--HHHHHHHHHHHHHHHHhC
Q 027795 44 KL--ITVFLHEASHAIACKLTC 63 (218)
Q Consensus 44 rl--l~t~~HE~GHAlaalltG 63 (218)
|+ -.+++||++||+.-+ .|
T Consensus 90 rll~gsiLAHE~mHa~Lrl-~g 110 (212)
T PF12315_consen 90 RLLTGSILAHELMHAWLRL-NG 110 (212)
T ss_pred HHHHhhHHHHHHHHHHhcc-cC
Confidence 55 467899999999844 44
No 102
>PRK01265 heat shock protein HtpX; Provisional
Probab=36.79 E-value=21 Score=32.89 Aligned_cols=16 Identities=25% Similarity=0.166 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHH
Q 027795 41 TPFKLITVFLHEASHA 56 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHA 56 (218)
.+=-+..++.||+||-
T Consensus 136 ~~~El~aVlAHElgHi 151 (324)
T PRK01265 136 NRDEIKAVAGHELGHL 151 (324)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4557889999999995
No 103
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=36.65 E-value=21 Score=31.05 Aligned_cols=13 Identities=54% Similarity=0.662 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q 027795 45 LITVFLHEASHAI 57 (218)
Q Consensus 45 ll~t~~HE~GHAl 57 (218)
-..+..||-|||+
T Consensus 92 ~~aVAAHEVGHAi 104 (226)
T COG2738 92 AIAVAAHEVGHAI 104 (226)
T ss_pred HHHHHHHHhhHHH
Confidence 3567899999997
No 104
>PRK02870 heat shock protein HtpX; Provisional
Probab=36.63 E-value=21 Score=33.02 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHH
Q 027795 41 TPFKLITVFLHEASHA 56 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHA 56 (218)
.+=-+-.++.||+||.
T Consensus 169 ~~dEL~aVlAHELgHi 184 (336)
T PRK02870 169 DRDELQAVMAHELSHI 184 (336)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4557889999999996
No 105
>PRK04860 hypothetical protein; Provisional
Probab=35.83 E-value=35 Score=28.28 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCC
Q 027795 44 KLITVFLHEASHAIACKLTCG 64 (218)
Q Consensus 44 rll~t~~HE~GHAlaalltGg 64 (218)
.+..|+.||+.|.++=+..|+
T Consensus 62 ~l~~~v~HEl~H~~~~~~~g~ 82 (160)
T PRK04860 62 FIDEVVPHELAHLLVYQLFGR 82 (160)
T ss_pred HHHhHHHHHHHHHHHHHHcCC
Confidence 567888999999999998873
No 106
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=34.03 E-value=30 Score=33.78 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 027795 41 TPFKLITVFLHEASHAIACK 60 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHAlaal 60 (218)
.|..-+-..+||.|||+=-.
T Consensus 255 d~~~~l~s~iHE~GHalYEq 274 (494)
T PF02074_consen 255 DFLSALFSTIHETGHALYEQ 274 (494)
T ss_dssp BTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHc
Confidence 44566677789999998766
No 107
>PHA00657 crystallin beta/gamma motif-containing protein
Probab=31.23 E-value=26 Score=38.25 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 027795 45 LITVFLHEASHAIACK 60 (218)
Q Consensus 45 ll~t~~HE~GHAlaal 60 (218)
-++||+||+||-+--+
T Consensus 791 D~STFvHE~gH~fLE~ 806 (2052)
T PHA00657 791 DLSTFLHESGHFFLEV 806 (2052)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3688888888884433
No 108
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=30.95 E-value=1.6e+02 Score=19.46 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=23.2
Q ss_pred HHHHHHHhccchhh-HHHHHHHHHHHhhhhhhhhHHHH
Q 027795 146 VFLAVIWVLQEETS-VRILRYVILFIGICLSCCIFSSL 182 (218)
Q Consensus 146 ~l~~~~~~~~~~~~-~~~~~~~llflGv~~~~ysv~dl 182 (218)
+-..+-++++++.. .........++|+..++|+++..
T Consensus 16 ~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~~~~~ 53 (55)
T PF09527_consen 16 VGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYNVYRL 53 (55)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666554 24555666778888777777654
No 109
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=30.27 E-value=37 Score=32.00 Aligned_cols=16 Identities=50% Similarity=0.567 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 027795 44 KLITVFLHEASHAIAC 59 (218)
Q Consensus 44 rll~t~~HE~GHAlaa 59 (218)
.+.+++.||.+|+++-
T Consensus 274 glAtvLgHE~aHaVar 289 (424)
T KOG2661|consen 274 GLATVLGHEIAHAVAR 289 (424)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5678899999999985
No 110
>PF01457 Peptidase_M8: Leishmanolysin This Prosite motif covers only the active site. This is family M8 in the peptidase classification. ; InterPro: IPR001577 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M8 (leishmanolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Leishmanolysin is an enzyme found in the eukaryotes including Leishmania and related parasitic protozoa []. The endopeptidase is the most abundant protein on the cell surface during the promastigote stage of the parasite, and is attached to the membrane by a glycosylphosphatidylinositol anchor []. In the amastigote form, the parasite lives in lysosomes of host macrophages, producing a form of the protease that has an acidic pH optimum []. This differs from most other metalloproteases and may be an adaptation to the environment in which the organism survives [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0007155 cell adhesion, 0016020 membrane; PDB: 1LML_A.
Probab=30.16 E-value=32 Score=33.45 Aligned_cols=15 Identities=27% Similarity=0.634 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q 027795 44 KLITVFLHEASHAIA 58 (218)
Q Consensus 44 rll~t~~HE~GHAla 58 (218)
..+-|..||+.||+-
T Consensus 209 ~~~~~~~HEi~HaLG 223 (521)
T PF01457_consen 209 EFFRTVIHEIAHALG 223 (521)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred cccceeeeeeeeeee
Confidence 556799999999984
No 111
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=30.04 E-value=1.7e+02 Score=22.48 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=23.7
Q ss_pred HHHhccchhh-HHHHHHHHHHHhhhhhhhhHHHHHH
Q 027795 150 VIWVLQEETS-VRILRYVILFIGICLSCCIFSSLLN 184 (218)
Q Consensus 150 ~~~~~~~~~~-~~~~~~~llflGv~~~~ysv~dl~~ 184 (218)
+..|++.... .......++++|+...+|.+|...+
T Consensus 62 lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w~wi~ 97 (100)
T TIGR02230 62 VGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAWHWVS 97 (100)
T ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555443 2455777889999998888887654
No 112
>PRK04351 hypothetical protein; Provisional
Probab=29.32 E-value=49 Score=27.07 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCC
Q 027795 42 PFKLITVFLHEASHAIACKLTCG 64 (218)
Q Consensus 42 Pfrll~t~~HE~GHAlaalltGg 64 (218)
+-++..|+-||+.|...=+ .|+
T Consensus 58 ~~~l~~vv~HElcH~~~~~-~g~ 79 (149)
T PRK04351 58 LEELIGIIKHELCHYHLHL-EGK 79 (149)
T ss_pred HHHHHhhHHHHHHHHHHHH-HCC
Confidence 5688899999999975444 354
No 113
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=29.14 E-value=35 Score=27.23 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHH
Q 027795 47 TVFLHEASHAIA 58 (218)
Q Consensus 47 ~t~~HE~GHAla 58 (218)
.|+.||+.|+|-
T Consensus 81 ~TL~HEL~H~WQ 92 (141)
T PHA02456 81 DTLAHELNHAWQ 92 (141)
T ss_pred HHHHHHHHHHHh
Confidence 699999999984
No 114
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=28.55 E-value=37 Score=33.06 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHH
Q 027795 41 TPFKLITVFLHEASHA 56 (218)
Q Consensus 41 ~Pfrll~t~~HE~GHA 56 (218)
.|--+..++.||.||.
T Consensus 126 ~esElagViAHEigHv 141 (484)
T COG4783 126 NESELAGVIAHEIGHV 141 (484)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3557889999999995
No 115
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=28.43 E-value=35 Score=28.89 Aligned_cols=14 Identities=29% Similarity=0.679 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHH
Q 027795 44 KLITVFLHEASHAI 57 (218)
Q Consensus 44 rll~t~~HE~GHAl 57 (218)
.++.|+.||+.|-.
T Consensus 81 ~i~~t~lHELaH~~ 94 (186)
T PF08325_consen 81 TILGTMLHELAHNV 94 (186)
T ss_pred HHHHHHHHHHHhcc
Confidence 57889999999964
No 116
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=28.05 E-value=8.6 Score=38.71 Aligned_cols=12 Identities=50% Similarity=0.786 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHH
Q 027795 46 ITVFLHEASHAI 57 (218)
Q Consensus 46 l~t~~HE~GHAl 57 (218)
+.|++||+||.+
T Consensus 222 iGVfaHEfGH~L 233 (645)
T PF05547_consen 222 IGVFAHEFGHDL 233 (645)
T ss_pred eEEEEeeccccC
Confidence 789999999975
No 117
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=27.42 E-value=27 Score=33.04 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q 027795 44 KLITVFLHEASHAIA 58 (218)
Q Consensus 44 rll~t~~HE~GHAla 58 (218)
.+..++.|||||-.+
T Consensus 123 EvAAVl~HEmgHVtA 137 (479)
T COG4784 123 EVAAVLAHEMGHVTA 137 (479)
T ss_pred HHHHHHHhhhhheec
Confidence 567899999999654
No 118
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism]
Probab=26.85 E-value=42 Score=32.78 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 027795 42 PFKLITVFLHEASHAIACKL 61 (218)
Q Consensus 42 Pfrll~t~~HE~GHAlaall 61 (218)
|..-+=-.+||.|||+=-.=
T Consensus 256 f~~aL~g~iHE~GHAlYEqn 275 (497)
T COG2317 256 FRSALFGTIHETGHALYEQN 275 (497)
T ss_pred HHHHHHHHHHhhhhHHHHcC
Confidence 44556677899999986543
No 119
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=26.52 E-value=32 Score=30.34 Aligned_cols=10 Identities=30% Similarity=0.255 Sum_probs=7.6
Q ss_pred HHHHHHHHHH
Q 027795 49 FLHEASHAIA 58 (218)
Q Consensus 49 ~~HE~GHAla 58 (218)
..||+||-.=
T Consensus 223 ~~HE~GH~~Q 232 (307)
T PF13402_consen 223 PWHELGHNHQ 232 (307)
T ss_dssp HHHHHHHHH-
T ss_pred ehhhhhhhcC
Confidence 6899999753
No 120
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=25.74 E-value=38 Score=32.52 Aligned_cols=13 Identities=38% Similarity=0.623 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q 027795 44 KLITVFLHEASHA 56 (218)
Q Consensus 44 rll~t~~HE~GHA 56 (218)
-+.++..||.||=
T Consensus 279 el~AVl~HELGHW 291 (428)
T KOG2719|consen 279 ELVAVLAHELGHW 291 (428)
T ss_pred HHHHHHHHHhhHH
Confidence 5678899999994
No 121
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=25.43 E-value=37 Score=28.00 Aligned_cols=10 Identities=40% Similarity=0.541 Sum_probs=8.5
Q ss_pred HHHHHHHHHH
Q 027795 48 VFLHEASHAI 57 (218)
Q Consensus 48 t~~HE~GHAl 57 (218)
+++||++|-.
T Consensus 167 VvvHEL~Hl~ 176 (205)
T PF01863_consen 167 VVVHELCHLR 176 (205)
T ss_pred HHHHHHHHhc
Confidence 7899999964
No 122
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=24.40 E-value=44 Score=26.71 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q 027795 46 ITVFLHEASHAIACK 60 (218)
Q Consensus 46 l~t~~HE~GHAlaal 60 (218)
..|++||.-|=++-=
T Consensus 2 ~~T~~HEa~HQl~~N 16 (128)
T PF07607_consen 2 IATIAHEATHQLAFN 16 (128)
T ss_pred chHHHHHHHHHHHHH
Confidence 579999999988753
No 123
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=24.19 E-value=44 Score=34.15 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHH
Q 027795 42 PFKLITVFLHEASHAI 57 (218)
Q Consensus 42 Pfrll~t~~HE~GHAl 57 (218)
|....+|++||+||.+
T Consensus 320 ~~~~a~v~AhelgH~l 335 (716)
T KOG3607|consen 320 LLAFAVVLAHELGHNL 335 (716)
T ss_pred chhHHHHHHHHHHhhc
Confidence 6678889999999986
No 124
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=22.72 E-value=4.3e+02 Score=21.59 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHhhHHhcCCCCCChHHHHHHHcCCCcc
Q 027795 176 CCIFSSLLNELTSALFLISLVKRSVANVYSENYRCNEQ 213 (218)
Q Consensus 176 ~ysv~dl~~~~~~~~~~~~~~~~SDA~~LA~lt~~Pa~ 213 (218)
+...|--++.+..+...+++.+..+.+.+|+-.+++.+
T Consensus 67 vLI~WA~YNq~RF~~~~R~~~~~~~~~eLA~Sf~is~e 104 (137)
T PRK14585 67 VLIVWALYNKLRFQKQQHHAAYQYTPQEYAESLAIPDE 104 (137)
T ss_pred HHHHHHHHHHHHhhhhccCCCCCCChHHHHHHcCCCHH
Confidence 34456556655443333345566788999999998653
No 125
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=22.20 E-value=40 Score=33.60 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhC-CceeeEEEEcCCCceeEEe
Q 027795 45 LITVFLHEASHAIACKLTC-GDVEGMQVHANEGGATQTR 82 (218)
Q Consensus 45 ll~t~~HE~GHAlaalltG-g~v~~i~l~~d~SG~t~s~ 82 (218)
+..+++||..|.|.+-+.+ ..-+.+-++ .|.|+..
T Consensus 288 l~~vIaHEIAHSWtGNlVTN~sWehfWLN---EGfTvyl 323 (613)
T KOG1047|consen 288 LVDVIAHEIAHSWTGNLVTNASWEHFWLN---EGFTVYL 323 (613)
T ss_pred hhhHHHHHhhhhhcccccccCccchhhhc---ccchhhh
Confidence 5789999999999987654 556777776 7888775
No 126
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=22.08 E-value=54 Score=24.98 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH
Q 027795 45 LITVFLHEASHAI 57 (218)
Q Consensus 45 ll~t~~HE~GHAl 57 (218)
+-.|.+||.||-+
T Consensus 73 I~~tlvhEiah~f 85 (97)
T PF06262_consen 73 IRDTLVHEIAHHF 85 (97)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 4579999999953
No 127
>PF11350 DUF3152: Protein of unknown function (DUF3152); InterPro: IPR022603 This entry represents Actinobacteria proteins of unknown function. Some are annotated as membrane proteins, however this cannot be confirmed.
Probab=21.98 E-value=35 Score=29.63 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=7.8
Q ss_pred HHHHHHHHH
Q 027795 49 FLHEASHAI 57 (218)
Q Consensus 49 ~~HE~GHAl 57 (218)
+=||.||++
T Consensus 143 INHEVGH~L 151 (203)
T PF11350_consen 143 INHEVGHAL 151 (203)
T ss_pred hhhhhhhhc
Confidence 569999997
No 128
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.87 E-value=1.2e+02 Score=28.50 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=40.6
Q ss_pred CcccccccCCCchhhHH-HHHHHHHHHHHhhhhh---hhhhhHH----------HHHHHHHHHHHHHHHHhCCceeeEEE
Q 027795 6 NWELKNCCNRDQVRFLV-TIGVFTVVILALWRTI---LLTPFKL----------ITVFLHEASHAIACKLTCGDVEGMQV 71 (218)
Q Consensus 6 ~~~~~~~~~~~q~~~~~-~~~~~~v~~~~lW~~~---il~Pfrl----------l~t~~HE~GHAlaalltGg~v~~i~l 71 (218)
-|.-...|...+.+.++ +++.++++++.+|..- .+|+..+ ..+++-=.=-.++.+++||+ ++|-+
T Consensus 180 VW~yep~~~~~~vl~~~fvl~tlaivLFPLWP~~mR~gvyY~sig~~gfl~~IlvLaIvRlILF~I~~il~~g~-~g~W~ 258 (372)
T KOG2927|consen 180 VWIYEPRPLMWQVLGVLFVLVTLAIVLFPLWPRRMRQGVYYLSIGAGGFLAFILVLAIVRLILFGITWILTGGK-HGFWL 258 (372)
T ss_pred EEeccCCchhHHHHHHHHHHHHHHHHhcccCcHHHhcceeeeecchhHHHHHHHHHHHHHHHHHHHHHHHhCCC-CceEe
Confidence 36665555555555533 2444446777788754 2333332 23444555566778888875 78999
Q ss_pred EcCC
Q 027795 72 HANE 75 (218)
Q Consensus 72 ~~d~ 75 (218)
+||-
T Consensus 259 FPNL 262 (372)
T KOG2927|consen 259 FPNL 262 (372)
T ss_pred ccch
Confidence 9983
No 129
>PF11667 DUF3267: Protein of unknown function (DUF3267); InterPro: IPR021683 This family of proteins has no known function.
Probab=21.85 E-value=95 Score=23.42 Aligned_cols=20 Identities=30% Similarity=0.258 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhCCce
Q 027795 47 TVFLHEASHAIACKLTCGDV 66 (218)
Q Consensus 47 ~t~~HE~GHAlaalltGg~v 66 (218)
....||+=|++.....|.+-
T Consensus 6 ~~~~HEliH~l~~~~~~~~~ 25 (111)
T PF11667_consen 6 LIPLHELIHGLFFKLFGKKP 25 (111)
T ss_pred eHHHHHHHHHHHHHHhCCCC
Confidence 45799999999999999855
No 130
>PTZ00337 surface protease GP63; Provisional
Probab=21.39 E-value=63 Score=32.17 Aligned_cols=14 Identities=36% Similarity=0.423 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHH
Q 027795 44 KLITVFLHEASHAI 57 (218)
Q Consensus 44 rll~t~~HE~GHAl 57 (218)
+.+-|..||+.||+
T Consensus 228 ~~~~v~~HEi~HAL 241 (567)
T PTZ00337 228 GDVRVAAHELGHAL 241 (567)
T ss_pred HHHHHHHHHHHHHH
Confidence 45779999999999
No 131
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=20.87 E-value=59 Score=23.63 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHH
Q 027795 46 ITVFLHEASHAI 57 (218)
Q Consensus 46 l~t~~HE~GHAl 57 (218)
...+.||+.|.+
T Consensus 62 ~~llaHEl~Hv~ 73 (79)
T PF13699_consen 62 RALLAHELAHVV 73 (79)
T ss_pred chhHhHHHHHHH
Confidence 557899999975
No 132
>CHL00206 ycf2 Ycf2; Provisional
Probab=20.63 E-value=83 Score=36.15 Aligned_cols=26 Identities=8% Similarity=0.204 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHh--CCceeeEEEE
Q 027795 47 TVFLHEASHAIACKLT--CGDVEGMQVH 72 (218)
Q Consensus 47 ~t~~HE~GHAlaallt--Gg~v~~i~l~ 72 (218)
.+.+||.|||+++-+. -..++.|.+.
T Consensus 1892 ~ia~yEiGhAvvq~~L~~~~pv~kISIy 1919 (2281)
T CHL00206 1892 GILFYQIGRAVAQNVLLSNCPIDPISIY 1919 (2281)
T ss_pred hhhhhHHhHHHHHHhccCCCCcceEEEe
Confidence 5789999999998765 6788899985
Done!