Query 027797
Match_columns 218
No_of_seqs 145 out of 1106
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 02:20:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_L Ribosomal protein L13; 100.0 4.6E-75 1.6E-79 511.1 7.9 209 1-218 1-250 (250)
2 3r8s_J 50S ribosomal protein L 100.0 4.1E-64 1.4E-68 412.0 11.7 142 65-209 1-142 (142)
3 2ftc_H L13MT, MRP-L13, 39S rib 100.0 9.8E-64 3.3E-68 412.1 12.7 147 65-211 1-147 (148)
4 3v2d_N 50S ribosomal protein L 100.0 8.5E-64 2.9E-68 409.3 11.3 140 65-209 1-140 (140)
5 2zjr_G 50S ribosomal protein L 100.0 3.4E-62 1.2E-66 411.8 11.6 149 59-212 23-171 (174)
6 3f1f_N 50S ribosomal protein L 100.0 1.2E-62 4.2E-67 410.8 8.7 144 61-209 20-163 (163)
7 1j3a_A 50S ribosomal protein L 100.0 4.9E-49 1.7E-53 322.3 6.9 118 82-212 1-120 (142)
8 4b6a_O 60S ribosomal protein L 100.0 8.8E-47 3E-51 323.7 7.5 126 79-216 3-129 (199)
9 1vq8_J 50S ribosomal protein L 100.0 6.7E-46 2.3E-50 304.9 5.7 115 79-212 6-121 (145)
10 4a17_I RPL13A, 60S ribosomal p 100.0 9.5E-45 3.2E-49 310.9 5.9 126 79-216 2-128 (198)
11 3iz5_K 60S ribosomal protein L 100.0 1.5E-43 5.1E-48 305.1 5.0 124 78-215 7-133 (206)
12 2zkr_j 60S ribosomal protein L 100.0 7.4E-43 2.5E-47 300.2 7.0 116 78-214 2-127 (203)
13 3jyw_M 60S ribosomal protein L 100.0 1.2E-42 4.1E-47 293.7 3.1 121 83-215 1-122 (178)
14 3koj_A Uncharacterized protein 39.8 15 0.00053 27.8 2.3 29 81-125 53-81 (108)
15 3stb_C RNA-editing complex pro 33.7 83 0.0028 25.5 5.8 33 78-125 83-115 (148)
16 4dam_A Single-stranded DNA-bin 26.3 35 0.0012 26.3 2.3 29 81-125 63-91 (128)
17 3vdy_A SSB, single-stranded DN 24.3 41 0.0014 24.9 2.3 30 80-125 49-78 (116)
18 3bbn_T Ribosomal protein S20; 23.1 17 0.0006 31.0 0.0 25 3-27 5-38 (202)
19 3ulp_A Single-strand binding p 22.4 44 0.0015 25.2 2.2 29 81-125 54-83 (124)
20 2vw9_A Single-stranded DNA bin 21.6 49 0.0017 25.4 2.3 28 81-124 49-76 (134)
21 1z9f_A Single-strand binding p 21.1 55 0.0019 26.0 2.6 29 81-125 63-91 (153)
22 1eqq_A Single stranded DNA bin 20.5 48 0.0016 27.0 2.2 28 81-124 54-81 (178)
23 3afp_A Single-stranded DNA-bin 20.3 58 0.002 26.1 2.6 29 81-125 53-81 (168)
No 1
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=4.6e-75 Score=511.09 Aligned_cols=209 Identities=71% Similarity=1.134 Sum_probs=124.7
Q ss_pred CceeccCceeEeccCCCCCCCCcccccccccccccCCCCCCCccccccc-------------------------------
Q 027797 1 MATLCTPTCVIFSSLQSSSSSSSFKTLNTGTTISSSTTPFLGFSVASAK------------------------------- 49 (218)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 49 (218)
||+.+++||++|+|.+ ++.++||++. ..|||+||+.+...
T Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 71 (250)
T 3bbo_L 1 MATMACASSLTFPSAQ--TQKSFFGTNV-------KQTPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQLKEAVKKE 71 (250)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcceeeccceeccCCC--CCCccccccc-------ccCceeecccccccccccccccCCCcceEEeeeccchhhhhhccc
Confidence 8899999999999887 5799999998 78899988765422
Q ss_pred ---ccccccccccc-------hhhhhhccccCCCCCcCcCceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCC
Q 027797 50 ---STSPLNTKRSF-------KDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGA 119 (218)
Q Consensus 50 ---~~~~~~~~~~~-------~~~~~kt~~~k~~~~~~~~k~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd 119 (218)
..+|++|+|++ +|+||+||++|++++++++++||||||+||+|||||++||++|+|||||+||||+||||
T Consensus 72 ~~~~~v~~~~~~~~~~~~~~g~d~~~kT~~~k~~~v~~~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD 151 (250)
T 3bbo_L 72 FAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGA 151 (250)
T ss_dssp ----------------------------------------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSC
T ss_pred cccccccccccccccchhhcCCCccceeecCChhhcccccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCC
Confidence 24899999987 99999999999999777799999999999999999999999999999999999999999
Q ss_pred EEEEEecceeeEeCcccccceeeccccccCCCCccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCc
Q 027797 120 YVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 199 (218)
Q Consensus 120 ~VVVINaekI~iTG~K~~~K~Y~~htgypGglk~~t~~~l~~r~P~~IikrAVrGMLPKn~lGr~~lkrLkVY~G~~hP~ 199 (218)
+|||||||+|+|||+||++|.|++|+|||||+++++++++++++|++||++|||||||||++||++|+|||||+|.+|||
T Consensus 152 ~VVVINAeKI~lTG~K~~~K~Y~rHsgyPGGlK~~t~~~l~~r~PerIi~kAVrGMLPkn~lGr~~lkrLkVY~G~~HPh 231 (250)
T 3bbo_L 152 FVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPH 231 (250)
T ss_dssp CCEESCCSSCCCCSGGGGTCCCBCCCSSSSCCCBCCHHHHTTSCTTHHHHHHHHTTSCSSSSHHHHHTTCCCCSSSCCSC
T ss_pred EEEEEecceEEecCChhhceEEEEecCcCCCcccccHHHhhhcChHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeccccchhhhcC
Q 027797 200 EAQQPIELPIRDKRIQKQR 218 (218)
Q Consensus 200 ~~qkp~~l~~~~~~~~~~~ 218 (218)
++|+|+++++++||+++|+
T Consensus 232 ~aQkp~~l~ia~k~v~~~~ 250 (250)
T 3bbo_L 232 QAQQPIDLPLRDKRIRVEK 250 (250)
T ss_dssp TTSCC--------------
T ss_pred HHcCCeeechhhheeeccC
Confidence 9999999999999999986
No 2
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=4.1e-64 Score=411.96 Aligned_cols=142 Identities=56% Similarity=0.925 Sum_probs=139.2
Q ss_pred hhccccCCCCCcCcCceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeEeCcccccceeecc
Q 027797 65 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 144 (218)
Q Consensus 65 ~kt~~~k~~~~~~~~k~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~iTG~K~~~K~Y~~h 144 (218)
|+||++|+++ ++|+|+||||+||+||||||+||++|+|||||+|||++||||+|||||||+|+|||+||++|.|++|
T Consensus 1 mkt~~~~~~~---~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~h 77 (142)
T 3r8s_J 1 MKTFTAKPET---VKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHH 77 (142)
T ss_dssp CCCCCCCTTT---CCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCEE
T ss_pred CCcccCChhh---ccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEEe
Confidence 5899999999 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeecc
Q 027797 145 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPI 209 (218)
Q Consensus 145 tgypGglk~~t~~~l~~r~P~~IikrAVrGMLPKn~lGr~~lkrLkVY~G~~hP~~~qkp~~l~~ 209 (218)
||||||+++.+++++++++|++||++|||||||||++||++|+|||||+|.+|||++|+|+.+++
T Consensus 78 tgypGg~k~~~~~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hph~aq~p~~l~~ 142 (142)
T 3r8s_J 78 TGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI 142 (142)
T ss_dssp CSSTTCEECCBHHHHHHHCSHHHHHHHHHHHSCSSHHHHHHHTTEEECSSSCCSCGGGCCEECCC
T ss_pred cCcCCCccccCHHHHHhhCHHHHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCcccCCCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999998874
No 3
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=9.8e-64 Score=412.06 Aligned_cols=147 Identities=27% Similarity=0.502 Sum_probs=143.0
Q ss_pred hhccccCCCCCcCcCceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeEeCcccccceeecc
Q 027797 65 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 144 (218)
Q Consensus 65 ~kt~~~k~~~~~~~~k~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~iTG~K~~~K~Y~~h 144 (218)
|.||+++++++.+++++|+||||+||+||||||+||++|+|||||+|||++||||+|||||||+|+|||+||++|.|++|
T Consensus 1 m~t~~~k~~~~~~~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~h 80 (148)
T 2ftc_H 1 MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSH 80 (148)
T ss_pred CcccccchhhhhcccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeeee
Confidence 45899999997777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeecccc
Q 027797 145 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRD 211 (218)
Q Consensus 145 tgypGglk~~t~~~l~~r~P~~IikrAVrGMLPKn~lGr~~lkrLkVY~G~~hP~~~qkp~~l~~~~ 211 (218)
+|||||+++.+++++++++|++||++|||||||||++||++|+|||||+|++|||++|+|+.+++++
T Consensus 81 tg~pGg~k~~~~~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hP~~aq~p~~~~i~~ 147 (148)
T 2ftc_H 81 TGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELPQ 147 (148)
T ss_pred eCCcCCceeccHHHHhhcCHHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCChHHhCCeeeccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998875
No 4
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=8.5e-64 Score=409.27 Aligned_cols=140 Identities=53% Similarity=0.942 Sum_probs=136.9
Q ss_pred hhccccCCCCCcCcCceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeEeCcccccceeecc
Q 027797 65 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 144 (218)
Q Consensus 65 ~kt~~~k~~~~~~~~k~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~iTG~K~~~K~Y~~h 144 (218)
|+||++| + ++++|+||||+||+||||||+||++|+|||||+|||++||||+|||||||+|++||+||++|.|++|
T Consensus 1 m~t~~~~--~---~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~h 75 (140)
T 3v2d_N 1 MKTYVPK--Q---VEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRY 75 (140)
T ss_dssp CCCCCCC--C---CCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEEE
T ss_pred Ccccccc--c---ccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEEe
Confidence 5799999 6 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeecc
Q 027797 145 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPI 209 (218)
Q Consensus 145 tgypGglk~~t~~~l~~r~P~~IikrAVrGMLPKn~lGr~~lkrLkVY~G~~hP~~~qkp~~l~~ 209 (218)
||||||+++.+++++++++|++||++|||||||||++||++|+|||||+|.+|||++|+|+.+++
T Consensus 76 tgypGglk~~~~~~~~~r~P~~ii~~aVrGMLPk~~lgr~~l~rLkVy~G~~hph~aq~p~~~~~ 140 (140)
T 3v2d_N 76 SGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV 140 (140)
T ss_dssp CSSTTCEEEEEHHHHHHHCTHHHHHHHHHHTSCSSHHHHHHHHTEEECSSSCCSCGGGCCEEECC
T ss_pred cccCCcceeccHHHhhhhCHHHHHHHHHHhcCCCChhHHHHHhCCEEeCCCCCCcccCCCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999875
No 5
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=100.00 E-value=3.4e-62 Score=411.75 Aligned_cols=149 Identities=47% Similarity=0.770 Sum_probs=138.3
Q ss_pred cchhhhhhccccCCCCCcCcCceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeEeCccccc
Q 027797 59 SFKDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 138 (218)
Q Consensus 59 ~~~~~~~kt~~~k~~~~~~~~k~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~iTG~K~~~ 138 (218)
+..+.+|+||++|+ ++++||||||+||+||||||+||++|+|||||+|||++||||+|||||||+|++||+||++
T Consensus 23 ~~~~~~m~T~~~k~-----~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~ 97 (174)
T 2zjr_G 23 LLRSFKVKTYIPKN-----DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDD 97 (174)
T ss_dssp -------CCCCCCC-----SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSS
T ss_pred ccccceeeeeccCc-----ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhc
Confidence 45566889999998 3899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccccccCCCCccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeeccccc
Q 027797 139 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDK 212 (218)
Q Consensus 139 K~Y~~htgypGglk~~t~~~l~~r~P~~IikrAVrGMLPKn~lGr~~lkrLkVY~G~~hP~~~qkp~~l~~~~~ 212 (218)
|.|++|+|||||+++.+++++++++|++||++|||||||||++||++|+|||||+|.+|||++|+|+++++.+.
T Consensus 98 K~yy~htgypGGlk~~~~~~~~~r~P~~Ii~~AVrGMLPkn~lGr~~l~rLkVy~G~~hph~aqkp~~l~~~~~ 171 (174)
T 2zjr_G 98 KVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQKPQVLKTQPL 171 (174)
T ss_dssp CEEEECCSSCSSCCEEEESTTTTSCHHHHHHHHHGGGSCCSHHHHHHHTTCEECSCSTGGGGSCCSCCCCCCCC
T ss_pred eEEEEecCcCCCcccccHHHHhhcChHHHHHHHHHhcCCCChhHHHHHhCeEEECCCCCChhccCCeEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988653
No 6
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=1.2e-62 Score=410.78 Aligned_cols=144 Identities=51% Similarity=0.918 Sum_probs=135.1
Q ss_pred hhhhhhccccCCCCCcCcCceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeEeCcccccce
Q 027797 61 KDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKI 140 (218)
Q Consensus 61 ~~~~~kt~~~k~~~~~~~~k~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~iTG~K~~~K~ 140 (218)
+.-.|+||++| + ++++|+||||+||+||||||+||++|+|||||+|||++||||+|||||||+|+|||+||++|.
T Consensus 20 ~~~~mkt~~~k--~---~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~ 94 (163)
T 3f1f_N 20 RRALVKTYVPK--Q---VEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKI 94 (163)
T ss_dssp -----CCCCCC--C---CCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCE
T ss_pred HHhcCcccccc--c---ccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhhee
Confidence 33347899999 6 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccCCCCccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeecc
Q 027797 141 YRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPI 209 (218)
Q Consensus 141 Y~~htgypGglk~~t~~~l~~r~P~~IikrAVrGMLPKn~lGr~~lkrLkVY~G~~hP~~~qkp~~l~~ 209 (218)
|++|||||||+++.+++++++++|++||++|||||||||++||++|+|||||+|.+|||++|+|+.+++
T Consensus 95 yy~htgypGglk~~t~~~~~~r~P~~Ii~~AVrGMLPkn~lGr~~l~rLkVY~G~~hPh~aQ~P~~l~~ 163 (163)
T 3f1f_N 95 YTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV 163 (163)
T ss_dssp ECCBCSSTTCBCCEEHHHHHHSSCHHHHHHHHHTTSCSSHHHHHHHHTCEECSSSCCCCCSCCCBCC--
T ss_pred eEEecCcCCcceeeehHHhhhcCHHHHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCcccCCCeecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998874
No 7
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=4.9e-49 Score=322.31 Aligned_cols=118 Identities=28% Similarity=0.416 Sum_probs=104.4
Q ss_pred EEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeEeCcccccceeeccccccCCCCc-cCHHHHh
Q 027797 82 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKE-ETFDQLQ 160 (218)
Q Consensus 82 W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~iTG~K~~~K~Y~~htgypGglk~-~t~~~l~ 160 (218)
|+||||+||+||||||+||++|+ |||+|||||||+|+|||+|+++|.|++|++||||++. .+ ++++
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~-~~~~ 67 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLL------------EGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRR-GPFY 67 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHC--------------C
T ss_pred CEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCeeeEecccHHhheeeeeecCCCCCCcCCcc-Cccc
Confidence 99999999999999999999999 9999999999999999999999999999999999776 67 9999
Q ss_pred hcChHHHHHHHHHccCC-CCcchHHHhccceeecCCCCCccCCCCeeeccccc
Q 027797 161 HRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDK 212 (218)
Q Consensus 161 ~r~P~~IikrAVrGMLP-Kn~lGr~~lkrLkVY~G~~hP~~~qkp~~l~~~~~ 212 (218)
+++|++||++||||||| ||++||++|+|||||+|.+|||++|+|++++.+++
T Consensus 68 ~r~P~~ii~~aVrGMLP~k~~lgr~~l~rLkVy~G~~hp~~aqkp~~~~~a~~ 120 (142)
T 1j3a_A 68 PKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHV 120 (142)
T ss_dssp CCSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBG
T ss_pred ccCHHHHHHHHHHhhccCCCHHHHHHHhCcEEeCCCCCCccccCcEeccHHHh
Confidence 99999999999999999 89999999999999999999999999999999875
No 8
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=100.00 E-value=8.8e-47 Score=323.68 Aligned_cols=126 Identities=30% Similarity=0.460 Sum_probs=121.2
Q ss_pred CceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeEeCcccccceeeccccccCCCCccCHHH
Q 027797 79 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQ 158 (218)
Q Consensus 79 ~k~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~iTG~K~~~K~Y~~htgypGglk~~t~~~ 158 (218)
.++|+||||+|++||||||.||+.|+ .||+|||||||+|.|||+|+++|.|++|++||||++..++++
T Consensus 3 ~~~~vVIDA~g~vLGRLAS~VAk~L~------------~Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~ 70 (199)
T 4b6a_O 3 SQPVVVIDAKDHLLGRLASTIAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGP 70 (199)
T ss_dssp CCSEEEEECTTBBHHHHHHHHHHHHH------------TTCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhc------------CCCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHH
Confidence 46899999999999999999999998 799999999999999999999999999999999999999999
Q ss_pred HhhcChHHHHHHHHHccCC-CCcchHHHhccceeecCCCCCccCCCCeeeccccchhhh
Q 027797 159 LQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQK 216 (218)
Q Consensus 159 l~~r~P~~IikrAVrGMLP-Kn~lGr~~lkrLkVY~G~~hP~~~qkp~~l~~~~~~~~~ 216 (218)
+++++|++||++||||||| ||++|+.+|+||+||+|.+|||++|+++++|.+++.++.
T Consensus 71 ~~~r~P~~il~~aVrGMLP~K~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~Al~~~~l 129 (199)
T 4b6a_O 71 FHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRL 129 (199)
T ss_dssp CCCCSHHHHHHHHHHTTSCTTSHHHHHHHHTEEECSSCCSGGGGSCCBBCGGGBHHHHS
T ss_pred HhhcCcHHHHHHHHhccCCCCChhhhHHHhccEEeCCCCCCcccCCCEecchHHHhhcc
Confidence 9999999999999999999 799999999999999999999999999999999876543
No 9
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=100.00 E-value=6.7e-46 Score=304.89 Aligned_cols=115 Identities=30% Similarity=0.391 Sum_probs=111.2
Q ss_pred CceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeEeCcccccceeeccccccCCCCccCHHH
Q 027797 79 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQ 158 (218)
Q Consensus 79 ~k~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~iTG~K~~~K~Y~~htgypGglk~~t~~~ 158 (218)
.++|+||||+||+||||||+||++|+ |||+|||||||+|+|||+|+++|.|++|++|||+ ++++
T Consensus 6 ~~~w~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~htg~~g~----~~~~ 69 (145)
T 1vq8_J 6 FDADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERAVITGREEQIVEKYEKRVDIGN----DNGY 69 (145)
T ss_dssp CCCSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCC----SSCC
T ss_pred cccEEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCEeeEecchhhhheeeeEEeCCCCC----CHHH
Confidence 56899999999999999999999999 9999999999999999999999999999999998 7899
Q ss_pred HhhcChHHHHHHHHHccCC-CCcchHHHhccceeecCCCCCccCCCCeeeccccc
Q 027797 159 LQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDK 212 (218)
Q Consensus 159 l~~r~P~~IikrAVrGMLP-Kn~lGr~~lkrLkVY~G~~hP~~~qkp~~l~~~~~ 212 (218)
+++++|++||++||||||| ||++||++|+|||||+|.+|| |+++++|.++.
T Consensus 70 ~~~r~P~~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p---~k~~vv~~a~~ 121 (145)
T 1vq8_J 70 FYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD---EDGEVLDGTSL 121 (145)
T ss_dssp CCCCSHHHHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS---SCCBCCTTCBC
T ss_pred HhhcChHHHHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC---CCceeeehhhh
Confidence 9999999999999999999 899999999999999999999 89999999864
No 10
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=100.00 E-value=9.5e-45 Score=310.91 Aligned_cols=126 Identities=26% Similarity=0.305 Sum_probs=119.1
Q ss_pred CceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeEeCcccccceeeccccccCCCCccCHHH
Q 027797 79 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQ 158 (218)
Q Consensus 79 ~k~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~iTG~K~~~K~Y~~htgypGglk~~t~~~ 158 (218)
.++|+||||+||+||||||+||++|+ |||+|||||||+|+|||+||++|.||+|..++++.+..++++
T Consensus 2 ~~~w~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~ 69 (198)
T 4a17_I 2 FDKLVVIDAKGHLLGRLASYVAKELL------------SGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGV 69 (198)
T ss_dssp CSSCEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSC
T ss_pred CccEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCccccccCchhhheeeeeeccccccCCCCcccc
Confidence 36899999999999999999999998 999999999999999999999999999988888888777899
Q ss_pred HhhcChHHHHHHHHHccCCC-CcchHHHhccceeecCCCCCccCCCCeeeccccchhhh
Q 027797 159 LQHRIPERIIEHAVRGMLPK-GRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQK 216 (218)
Q Consensus 159 l~~r~P~~IikrAVrGMLPK-n~lGr~~lkrLkVY~G~~hP~~~qkp~~l~~~~~~~~~ 216 (218)
+++++|++||++||+||||+ |++||.+|+||+||+|.+|||++|+.+++|.+++.++.
T Consensus 70 ~~~r~P~rIi~~AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~al~v~rl 128 (198)
T 4a17_I 70 QHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKVQRL 128 (198)
T ss_dssp CCCCSHHHHHHHHHHTTTTTTSHHHHHHHHHCEECSSCCGGGTTSCCBCCGGGBHHHHS
T ss_pred ccccCHHHHHHHHHhccCCCCChhHHHHHhCcEEecCCCCChhhccccccchHhhhhhc
Confidence 99999999999999999995 99999999999999999999999999999999875543
No 11
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=100.00 E-value=1.5e-43 Score=305.05 Aligned_cols=124 Identities=28% Similarity=0.415 Sum_probs=112.4
Q ss_pred cCceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeEeCcccccceeeccccccCCCCcc--C
Q 027797 78 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEE--T 155 (218)
Q Consensus 78 ~~k~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~iTG~K~~~K~Y~~htgypGglk~~--t 155 (218)
+.++|+||||+||+||||||+||++|+ |||+|||||||+|+|||+||++|.||+| |.+..... +
T Consensus 7 f~r~W~VIDA~g~~LGRLAS~VAk~Ll------------~Gd~VVVINAekI~iTG~K~~~K~yy~~--~l~~~~~~np~ 72 (206)
T 3iz5_K 7 VCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKMKYLR--FLRKRMNTKPS 72 (206)
T ss_dssp CCSSCCEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHH--HHHHTTCSCSS
T ss_pred cceeEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCcccCcCCchHhhhhheee--ecceeecCCCc
Confidence 689999999999999999999999998 9999999999999999999999999877 34432221 3
Q ss_pred HHHHhhcChHHHHHHHHHccCCC-CcchHHHhccceeecCCCCCccCCCCeeeccccchhh
Q 027797 156 FDQLQHRIPERIIEHAVRGMLPK-GRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQ 215 (218)
Q Consensus 156 ~~~l~~r~P~~IikrAVrGMLPK-n~lGr~~lkrLkVY~G~~hP~~~qkp~~l~~~~~~~~ 215 (218)
++++++++|++||++||+||||| |++||++|+||+||+|.+|||++|+.+++|.+++..+
T Consensus 73 ~~~~~~r~P~~Il~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqk~~vvP~al~v~~ 133 (206)
T 3iz5_K 73 HGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLR 133 (206)
T ss_dssp SCSCCCCSHHHHHHHHHHHHSCTTSHHHHHHHTTEEEESSCCTTCCSCCBCCTTTBCBTTB
T ss_pred ccchhhcCHHHHHHHHHhccCCCCChhHHHHHhCCEEeCCCCCChhhcccccCchHHhhhh
Confidence 58999999999999999999997 8999999999999999999999999999998876554
No 12
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=7.4e-43 Score=300.15 Aligned_cols=116 Identities=30% Similarity=0.481 Sum_probs=104.6
Q ss_pred cCceEEEEeCCCCCchhhHHHHHH-HHhcCCCCccCCCCCCCCEEEEEecceeeEeCcccccceee-ccc-------ccc
Q 027797 78 SDKTWYVVDATDKILGRLASTIAI-HIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYR-RHS-------GRP 148 (218)
Q Consensus 78 ~~k~W~vIDA~g~iLGRLAS~VAk-~L~GKhKp~ytP~~d~Gd~VVVINaekI~iTG~K~~~K~Y~-~ht-------gyp 148 (218)
.+++|+||||+||+||||||.||+ +|+ ||+|||||||+|+|||+||++|.|| +|+ ++|
T Consensus 2 ~~r~w~VIDA~g~~LGRLAS~VAk~lL~-------------G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~ 68 (203)
T 2zkr_j 2 AEVQVLVLDGRGHLLGRLAAIVAKQVLL-------------GRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSR 68 (203)
T ss_dssp -----CEEECTTBBHHHHHHHHHHHHHH-------------TCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSS
T ss_pred CCccEEEEeCCCCchHHHHHHHHHHHhC-------------CCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCC
Confidence 368999999999999999999999 776 7899999999999999999999999 998 677
Q ss_pred CCCCccCHHHHhhcChHHHHHHHHHccCCC-CcchHHHhccceeecCCCCCccCCCCeeeccccchh
Q 027797 149 GGMKEETFDQLQHRIPERIIEHAVRGMLPK-GRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRI 214 (218)
Q Consensus 149 Gglk~~t~~~l~~r~P~~IikrAVrGMLPK-n~lGr~~lkrLkVY~G~~hP~~~qkp~~l~~~~~~~ 214 (218)
|+ +++++|++||++||+||||| |++|+++|+||+||+|.+|||++|+|+++|.+++.+
T Consensus 69 G~--------~~~r~P~~I~~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqkp~vvp~a~~v~ 127 (203)
T 2zkr_j 69 GP--------YDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVV 127 (203)
T ss_dssp CC--------CCCCSHHHHHHHHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGBCCSS
T ss_pred Cc--------cccCChHHHHHHHHHhhCCCCChhHHHHHhCcEEeCCCCCchhhcCCcccchhhhhh
Confidence 76 57899999999999999998 899999999999999999999999999999888653
No 13
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=1.2e-42 Score=293.75 Aligned_cols=121 Identities=28% Similarity=0.445 Sum_probs=108.9
Q ss_pred EEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeEeCcccccceeeccccccCCCCccCHHHHhhc
Q 027797 83 YVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHR 162 (218)
Q Consensus 83 ~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVINaekI~iTG~K~~~K~Y~~htgypGglk~~t~~~l~~r 162 (218)
+||||+||+||||||+||++|+ |||+|||||||+|.|||+||++|.||+|..+.+.....+++++++|
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r 68 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFR 68 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHT------------TTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCS
T ss_pred CEEcCCCCchHHHHHHHHHHHh------------CCCEEEEEeCeeeEEcCchHhhEhheeccCcccccCCccccccccC
Confidence 5899999999999999999998 9999999999999999999999999998433333333356899999
Q ss_pred ChHHHHHHHHHccCC-CCcchHHHhccceeecCCCCCccCCCCeeeccccchhh
Q 027797 163 IPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQ 215 (218)
Q Consensus 163 ~P~~IikrAVrGMLP-Kn~lGr~~lkrLkVY~G~~hP~~~qkp~~l~~~~~~~~ 215 (218)
+|++||+++|||||| ||++||.+|+|||||+|.+|||++||++++|-+++..+
T Consensus 69 ~P~~Il~~AVrGMLP~K~~lGr~~l~rLkVy~G~~hp~~aqk~~vvp~Alrv~R 122 (178)
T 3jyw_M 69 APSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLR 122 (178)
T ss_dssp STTTHHHHHTTSSSCSSSHHHHHHHHHCCEESSCCCCSCCSCSSSCCSSCCCCC
T ss_pred CHHHHHHHHHHHHhhcccHhHHHHHhCCeeeCCCCCchhhcccccCchHhhhhc
Confidence 999999999999999 59999999999999999999999999999998876443
No 14
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=39.81 E-value=15 Score=27.82 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=23.3
Q ss_pred eEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEe
Q 027797 81 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVN 125 (218)
Q Consensus 81 ~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVIN 125 (218)
.|+=+-+ .|++|..++++|. .||.|+|--
T Consensus 53 ~fi~vv~----wgk~AE~~~~yl~------------KG~~V~VeG 81 (108)
T 3koj_A 53 ARLKVVG----WGAVAQELQDRCR------------LNDEVVLEG 81 (108)
T ss_dssp EEEEEEE----ETHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EEEEEEE----EhHHHHHHHHhCC------------CCCEEEEEE
Confidence 6776654 4799999999996 899998863
No 15
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=33.68 E-value=83 Score=25.47 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=28.4
Q ss_pred cCceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEe
Q 027797 78 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVN 125 (218)
Q Consensus 78 ~~k~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVIN 125 (218)
...+|+-|=+-| |.||..|.++|. .|+.|+|.-
T Consensus 83 ~~tdf~~V~vfG---g~lAE~i~~ylk------------kG~rVlVeG 115 (148)
T 3stb_C 83 PDKDFHTVRVFD---SDYSSRVKEQLR------------DGEWFLVTG 115 (148)
T ss_dssp CSEEEEEEEECS---HHHHHHHHHHCC------------TTCEEEEEE
T ss_pred CccceEEEEEEC---ChHHHHHHHHhc------------CCCEEEEEE
Confidence 366899998887 899999999996 899998864
No 16
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=26.33 E-value=35 Score=26.34 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=23.4
Q ss_pred eEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEe
Q 027797 81 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVN 125 (218)
Q Consensus 81 ~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVIN 125 (218)
.|+=|-| .|++|..++++|. .||.|+|.-
T Consensus 63 ~w~~v~~----wg~~Ae~~~~~l~------------KG~~V~VeG 91 (128)
T 4dam_A 63 NFFTVWA----NRQLATNASGSLA------------VGDPVVVQG 91 (128)
T ss_dssp EEEEEEE----EHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EEEEEEE----EcHHHHHHHHhcC------------CCCEEEEEE
Confidence 5776654 4789999999996 899999874
No 17
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=24.31 E-value=41 Score=24.91 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=22.5
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEe
Q 027797 80 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVN 125 (218)
Q Consensus 80 k~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVIN 125 (218)
-.|+=+- ..|++|..++++|. .||.|.|.-
T Consensus 49 t~~~~v~----~wg~~Ae~~~~~l~------------KG~~V~V~G 78 (116)
T 3vdy_A 49 ADYVNCT----LWRKTAENTALYCQ------------KGSLVGVSG 78 (116)
T ss_dssp EEEEEEE----EEHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred cEEEEEE----EECHHHHHHHHhCC------------CCCEEEEEE
Confidence 3665443 45889999999986 799988863
No 18
>3bbn_T Ribosomal protein S20; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=23.10 E-value=17 Score=31.02 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=0.0
Q ss_pred eeccCceeEecc---------CCCCCCCCccccc
Q 027797 3 TLCTPTCVIFSS---------LQSSSSSSSFKTL 27 (218)
Q Consensus 3 ~~~~~~~~~~~~---------~~~~~~~~~~~~~ 27 (218)
+.|.++|+.+++ .++|+|++||.+-
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (202)
T 3bbn_T 5 VQCLSSCATLESQFKVLSLKGISCSSPSSSFSNR 38 (202)
T ss_dssp ----------------------------------
T ss_pred hhhhhhhhcCchhhheeeecccccCCcccccCCc
Confidence 457888888765 3455556665443
No 19
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=22.37 E-value=44 Score=25.16 Aligned_cols=29 Identities=21% Similarity=0.317 Sum_probs=22.8
Q ss_pred eEEEEeCCCCCch-hhHHHHHHHHhcCCCCccCCCCCCCCEEEEEe
Q 027797 81 TWYVVDATDKILG-RLASTIAIHIRGKNLATYTPSVDMGAYVIVVN 125 (218)
Q Consensus 81 ~W~vIDA~g~iLG-RLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVIN 125 (218)
.|+=|-| .| ++|..++++|. .||.|.|.-
T Consensus 54 ~~~~v~~----wg~~~Ae~~~~~l~------------KG~~V~V~G 83 (124)
T 3ulp_A 54 DWHRIVV----YDQNIVDLIDKYLR------------KGRRVYVQG 83 (124)
T ss_dssp EEEEEEE----CCHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EEEEEEE----EEchHHHHHHhhcC------------CCCEEEEEE
Confidence 6766654 46 89999999986 899998863
No 20
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=21.59 E-value=49 Score=25.44 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 027797 81 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 124 (218)
Q Consensus 81 ~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVI 124 (218)
.|+=|- ..|++|..++++|. .||.|.|.
T Consensus 49 ~~~~v~----~wg~~Ae~~~~~l~------------KG~~V~V~ 76 (134)
T 2vw9_A 49 CFIDAR----LFGRTAEIANQYLS------------KGSSVLIE 76 (134)
T ss_dssp EEEEEE----EEHHHHHHHHHHCC------------TTCEEEEE
T ss_pred EEEEEE----EEcHHHHHHHHhCC------------CCCEEEEE
Confidence 465553 35789999999986 68877775
No 21
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=21.13 E-value=55 Score=25.99 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=22.6
Q ss_pred eEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEe
Q 027797 81 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVN 125 (218)
Q Consensus 81 ~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVIN 125 (218)
.|+=|-| .|++|..++++|. .|+.|+|.-
T Consensus 63 ~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~VeG 91 (153)
T 1z9f_A 63 DFFRIVT----FGRLAEFARTYLT------------KGRLVLVEG 91 (153)
T ss_dssp EEEEEEE----EHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EEEEEEE----ECHHHHHHHhhCC------------CCCEEEEEE
Confidence 5665543 4789999999986 899998863
No 22
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=20.53 E-value=48 Score=26.96 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=21.4
Q ss_pred eEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 027797 81 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 124 (218)
Q Consensus 81 ~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVI 124 (218)
.||=|- +.|++|..++++|. .||.|+|.
T Consensus 54 ~~i~vv----~wg~~Ae~~~~~l~------------KG~~V~Ve 81 (178)
T 1eqq_A 54 EWHRVV----LFGKLAEVASEYLR------------KGSQVYIE 81 (178)
T ss_dssp EEEEEE----ECHHHHHHHHHHCC------------TTCEEEEC
T ss_pred EEEEEE----EccHHHHHHHHhcC------------CCCEEEEE
Confidence 566554 45789999999986 78888775
No 23
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=20.25 E-value=58 Score=26.15 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=22.7
Q ss_pred eEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEe
Q 027797 81 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVN 125 (218)
Q Consensus 81 ~W~vIDA~g~iLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVIN 125 (218)
.||=|-+ .|++|..++++|. .||.|+|.-
T Consensus 53 ~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~VeG 81 (168)
T 3afp_A 53 LFLRCNI----WREAAENVAESLT------------RGARVIVTG 81 (168)
T ss_dssp EEEEEEE----EHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EEEEEEE----ehHHHHHHHHhCC------------CCCEEEEEE
Confidence 5665544 4789999999986 799998873
Done!