BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027798
(218 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C0LGH2|Y1561_ARATH Probable LRR receptor-like serine/threonine-protein kinase
At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2
Length = 1032
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 24 MRLPSLRKSSVAEGLTVEGILENWLKIKPVIMEEWSENR------EALIELSGKVRD--- 74
+ LPSL+ + VA T+EG+ L + + + NR + I G +
Sbjct: 381 VSLPSLKLNLVANNFTLEGLDNRVLPGLNCLQKNFPCNRGKGIYSDFSINCGGPEKRSVT 440
Query: 75 ----EWMDTDF---TTWIGANRLYPGVSDALKLASS-RIYIVTSNQSRFVETLLREL--- 123
E D DF + ++ A + + S L SS IYI TS QS+FV TL EL
Sbjct: 441 GALFEREDEDFGPASFFVSAGQRWAASSVGLFAGSSNNIYIATS-QSQFVNTLDSELFQS 499
Query: 124 AGVTITPDRLYGLG 137
A ++ + R YGLG
Sbjct: 500 ARLSASSVRYYGLG 513
>sp|D3G0V0|BIOW_BACPE 6-carboxyhexanoate--CoA ligase OS=Bacillus pseudofirmus (strain
OF4) GN=bioW PE=3 SV=1
Length = 273
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 70/180 (38%), Gaps = 43/180 (23%)
Query: 32 SSVAEGLTVEGILENWLKIKPVIMEEWSENREALIELSGKV------------------- 72
SSVA+G L IKP ++EE L EL G +
Sbjct: 86 SSVADGQATARSLLTEAGIKPQVIEEAYYVLSELTELRGALFIDAATGQRLDDPIKNGVR 145
Query: 73 --RDEWMDTDFTTWIGANRLYPGV--SDALKLASSRIYIVTSNQSRFVETLLRELAGVTI 128
R +W DF+ W+ ++L P + +AL LA+ VT + + E +
Sbjct: 146 VTRMDWPLDDFSCWLNEHQLSPNIRMKEALALATK----VTQHPATIAELCWSD------ 195
Query: 129 TPDRLYGLGTGPKVNV--LKQLQKKPEHQGLRLHFVEDRLATLKNVIKEPELDGWNLYLV 186
PD + G K + QL++ E +G R+ FV+ +KN LD + YL
Sbjct: 196 DPDYITGYVASQKFGYQRISQLKELGEEKGCRIFFVDQ--TKMKN------LDAYINYLT 247
>sp|B0BQ80|RIMN_ACTPJ tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Actinobacillus pleuropneumoniae serotype 3 (strain
JL03) GN=rimN PE=3 SV=1
Length = 184
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 110 SNQSRFVETLLRELAGVTITPDRLYGLGTGPK----VNVLKQLQKKPEHQGLRLHFVEDR 165
+N VE L R V + ++GLG P V L +L+K+PE +GL L
Sbjct: 2 NNLENIVEQLKRNRV-VAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLIL------ 54
Query: 166 LATLKNVIKEPELDGWNLYLVDWG-YNTPKERAEAASMP 203
+A K ++ P +D L W + TP ERA MP
Sbjct: 55 IAPTKELLL-PYIDENKLTAAHWQIFETPSERAITWVMP 92
>sp|B3GY27|RIMN_ACTP7 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Actinobacillus pleuropneumoniae serotype 7 (strain
AP76) GN=rimN PE=3 SV=2
Length = 184
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 110 SNQSRFVETLLRELAGVTITPDRLYGLGTGPK----VNVLKQLQKKPEHQGLRLHFVEDR 165
+N VE L R V + ++GLG P V L +L+K+PE +GL L
Sbjct: 2 NNLENIVEQLKRNRV-VAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLIL------ 54
Query: 166 LATLKNVIKEPELDGWNLYLVDWG-YNTPKERAEAASMP 203
+A K ++ P +D L W + TP ERA MP
Sbjct: 55 IAPTKELLL-PYIDENKLTAAHWQIFETPSERAITWVMP 92
>sp|A3N1E4|RIMN_ACTP2 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Actinobacillus pleuropneumoniae serotype 5b (strain
L20) GN=rimN PE=3 SV=1
Length = 184
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 110 SNQSRFVETLLRELAGVTITPDRLYGLGTGPK----VNVLKQLQKKPEHQGLRLHFVEDR 165
+N VE L R V + ++GLG P V L +L+K+PE +GL L
Sbjct: 2 NNLENIVEQLKRNRV-VAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLIL------ 54
Query: 166 LATLKNVIKEPELDGWNLYLVDWG-YNTPKERAEAASMP 203
+A K ++ P +D L W + TP ERA MP
Sbjct: 55 IAPTKELLL-PYIDENKLTAAHWQIFETPSERAITWVMP 92
>sp|Q54B49|PKS45_DICDI Probable polyketide synthase 45 OS=Dictyostelium discoideum
GN=pks45 PE=3 SV=2
Length = 3092
Score = 32.0 bits (71), Expect = 3.1, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 24 MRLPSL--RKSSVAEGLTV--EGILENWLKIKPVIMEEWSENREALIELSGKVRDEWMDT 79
+RLPS R S + EG +GI+E WS++ ++ E+S K DEWM
Sbjct: 20 LRLPSSINRPSELWEGFLAGFDGIVET--------TNRWSDSFASMDEISSKYADEWMSF 71
Query: 80 D 80
D
Sbjct: 72 D 72
>sp|Q8KCD6|HRCA_CHLTE Heat-inducible transcription repressor HrcA OS=Chlorobium tepidum
(strain ATCC 49652 / DSM 12025 / TLS) GN=hrcA PE=3 SV=1
Length = 356
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 96 DALKLASSRIYIVTSNQSRFVETLLREL 123
D ++LASSRI +V + QS FV+T++ EL
Sbjct: 146 DIVQLASSRIMVVIAIQSLFVKTIVMEL 173
>sp|B3QPX0|HRCA_CHLP8 Heat-inducible transcription repressor HrcA OS=Chlorobaculum parvum
(strain NCIB 8327) GN=hrcA PE=3 SV=1
Length = 356
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 96 DALKLASSRIYIVTSNQSRFVETLLRELAG----------VTITPDRLYGL 136
D ++LAS+RI +V + QS FV+T++ EL V I +RL GL
Sbjct: 146 DIVQLASTRIMVVIAIQSLFVKTIVMELTAEISRQKIDDVVNILNERLSGL 196
>sp|P19711|POLG_BVDVN Genome polyprotein OS=Bovine viral diarrhea virus (isolate NADL) PE=1
SV=2
Length = 3988
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 20 LLLEMRLPSLRKSSVAEGLTVEGILENWLKIKPVIMEEWSENREALIELSGKVRDEW 76
L++E R ++ L + ++ NW+K +PV++ + E + L + KVR EW
Sbjct: 3547 LVVEKRPRVIQYPEAKTRLAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFDKVRKEW 3602
>sp|Q96662|POLG_BVDVC Genome polyprotein OS=Bovine viral diarrhea virus (strain CP7) PE=1
SV=1
Length = 3907
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 38 LTVEGILENWLKIKPVIMEEWSENREALIELSGKVRDEW 76
L + ++ NW+K +PV++ + E + L + KVR EW
Sbjct: 3484 LAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFNKVRKEW 3521
>sp|Q01499|POLG_BVDVS Genome polyprotein OS=Bovine viral diarrhea virus (strain SD-1) PE=3
SV=1
Length = 3898
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 38 LTVEGILENWLKIKPVIMEEWSENREALIELSGKVRDEW 76
L + ++ NW+K +PV++ + E + L + KVR EW
Sbjct: 3475 LAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFNKVRKEW 3512
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,278,708
Number of Sequences: 539616
Number of extensions: 3255087
Number of successful extensions: 8629
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 8624
Number of HSP's gapped (non-prelim): 19
length of query: 218
length of database: 191,569,459
effective HSP length: 113
effective length of query: 105
effective length of database: 130,592,851
effective search space: 13712249355
effective search space used: 13712249355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)