Query         027800
Match_columns 218
No_of_seqs    166 out of 656
Neff          3.3 
Searched_HMMs 29240
Date          Tue Mar 26 02:25:18 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027800hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2vut_I AREA, nitrogen regulato  99.6   1E-16 3.6E-21  108.0   1.3   35  169-204     2-36  (43)
  2 3dfx_A Trans-acting T-cell-spe  99.6 2.7E-16 9.3E-21  113.6   3.0   39  165-204     4-42  (63)
  3 1gnf_A Transcription factor GA  99.6 2.3E-16 7.9E-21  107.7   2.3   37  167-204     3-39  (46)
  4 4gat_A Nitrogen regulatory pro  99.6 3.1E-16   1E-20  114.0   1.1   39  164-203     5-43  (66)
  5 2kae_A GATA-type transcription  99.5 3.7E-15 1.3E-19  109.8   2.0   40  165-204     5-44  (71)
  6 4hc9_A Trans-acting T-cell-spe  99.3 3.4E-13 1.2E-17  106.3   3.5   39  165-204    56-94  (115)
  7 4hc9_A Trans-acting T-cell-spe  99.2 2.7E-12 9.3E-17  101.1   1.2   35  166-201     3-37  (115)
  8 1dl6_A Transcription factor II  74.3     2.5 8.6E-05   29.0   3.1   35  165-202     8-42  (58)
  9 2yrk_A Zinc finger homeobox pr  71.8     1.3 4.4E-05   31.3   1.1   22  183-204     6-27  (55)
 10 2b0o_E UPLC1; arfgap, structur  66.3     2.3 7.9E-05   35.7   1.7   33  168-202    42-74  (301)
 11 1pft_A TFIIB, PFTFIIBN; N-term  58.9     2.8 9.5E-05   27.3   0.7   32  168-202     5-36  (50)
 12 1qyp_A RNA polymerase II; tran  58.6     2.5 8.7E-05   28.3   0.5   35  168-202    15-55  (57)
 13 2iqj_A Stromal membrane-associ  57.2     3.4 0.00012   32.9   1.1   36  167-204    26-61  (134)
 14 2crr_A Stromal membrane-associ  56.3     4.3 0.00015   32.5   1.5   35  168-204    29-63  (141)
 15 3dwd_A ADP-ribosylation factor  56.0     4.7 0.00016   33.0   1.7   34  168-203    38-71  (147)
 16 2crw_A ARF GAP 3, ADP-ribosyla  54.1     5.5 0.00019   32.4   1.9   35  168-204    29-63  (149)
 17 2owa_A Arfgap-like finger doma  53.4       4 0.00014   32.7   0.9   35  168-204    36-70  (138)
 18 2yrc_A Protein transport prote  48.4     5.6 0.00019   27.6   0.9   36  164-199     5-42  (59)
 19 3cw2_K Translation initiation   47.3       8 0.00027   31.1   1.8   31  168-199   103-133 (139)
 20 3k7a_M Transcription initiatio  47.0      10 0.00034   33.4   2.5    9  168-176    42-50  (345)
 21 2p57_A GTPase-activating prote  46.4     4.4 0.00015   32.9   0.1   35  168-204    37-71  (144)
 22 2g2k_A EIF-5, eukaryotic trans  46.1       2 6.7E-05   35.9  -2.0   46  169-214    97-143 (170)
 23 2d74_B Translation initiation   44.5     8.1 0.00028   31.4   1.4   30  169-199   105-134 (148)
 24 2e9h_A EIF-5, eukaryotic trans  42.3     2.6 8.9E-05   34.7  -1.8   45  169-213   104-149 (157)
 25 1tfi_A Transcriptional elongat  41.3     7.4 0.00025   26.1   0.6   36  166-201     7-48  (50)
 26 2olm_A Nucleoporin-like protei  38.8      10 0.00035   30.3   1.2   36  168-205    25-60  (140)
 27 1nee_A EIF-2-beta, probable tr  37.9     8.6 0.00029   30.9   0.6   30  169-199   103-132 (138)
 28 3po3_S Transcription elongatio  37.0      15  0.0005   30.2   1.8   36  166-201   135-176 (178)
 29 3jue_A Arfgap with coiled-coil  37.0      13 0.00046   32.6   1.7   34  168-203    45-78  (368)
 30 3sub_A ADP-ribosylation factor  36.3     9.6 0.00033   31.7   0.7   35  168-204    22-56  (163)
 31 3o47_A ADP-ribosylation factor  35.4     9.8 0.00033   32.6   0.6   34  168-203    37-70  (329)
 32 1pqv_S STP-alpha, transcriptio  34.5      10 0.00034   33.5   0.5   35  167-201   267-307 (309)
 33 1k81_A EIF-2-beta, probable tr  33.7       4 0.00014   25.8  -1.6   30  170-200     2-31  (36)
 34 2lcq_A Putative toxin VAPC6; P  31.1      14 0.00046   29.0   0.7   34  164-203   128-161 (165)
 35 1vk6_A NADH pyrophosphatase; 1  30.8      18  0.0006   31.0   1.4   32  168-203   107-138 (269)
 36 1pcx_A Protein transport prote  27.4      20 0.00069   35.4   1.4   34  167-200   111-144 (810)
 37 3h0g_I DNA-directed RNA polyme  26.9      32  0.0011   26.0   2.2   36  167-202    71-112 (113)
 38 3lvq_E ARF-GAP with SH3 domain  26.2      26 0.00089   31.2   1.7   34  167-202    22-55  (497)
 39 3efo_B SEC24 related gene fami  26.1      19 0.00065   35.4   0.9   34  166-199    96-129 (770)
 40 1m2v_B SEC24, protein transpor  25.9      23 0.00077   35.9   1.4   33  167-199   227-259 (926)
 41 3mhs_E SAGA-associated factor   25.2      14 0.00048   28.5  -0.2   10  192-201    77-86  (96)
 42 3h0g_L DNA-directed RNA polyme  25.1      26 0.00089   24.9   1.2   31  166-201    19-49  (63)
 43 3lju_X ARF-GAP with dual PH do  24.4      23 0.00079   31.7   1.0   34  168-203    34-67  (386)
 44 2kdx_A HYPA, hydrogenase/ureas  24.4      18 0.00061   27.3   0.3   33  165-203    70-103 (119)
 45 3eh2_A Protein transport prote  23.5      18 0.00063   35.5   0.3   34  166-199    92-125 (766)
 46 1twf_I B12.6, DNA-directed RNA  23.3      34  0.0012   26.2   1.7   35  168-202    72-112 (122)
 47 3eh1_A Protein transport prote  23.1      29   0.001   34.1   1.6   33  166-199    83-115 (751)
 48 1twf_L ABC10-alpha, DNA-direct  22.5      24 0.00081   25.3   0.6   29  165-198    25-53  (70)
 49 2jny_A Uncharacterized BCR; st  22.2      28 0.00096   24.7   0.9   32  166-201     8-39  (67)
 50 1dcq_A PYK2-associated protein  21.5      26 0.00089   28.7   0.8   34  167-202    16-49  (278)
 51 1lko_A Rubrerythrin all-iron(I  21.2      13 0.00044   30.3  -1.2   29  167-201   154-182 (191)
 52 2js4_A UPF0434 protein BB2007;  20.8      28 0.00094   24.8   0.7   33  165-201     5-37  (70)
 53 4bbr_M Transcription initiatio  20.3      21 0.00071   31.7  -0.1   11  190-200    42-52  (345)

No 1  
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.60  E-value=1e-16  Score=108.01  Aligned_cols=35  Identities=29%  Similarity=0.464  Sum_probs=32.5

Q ss_pred             cccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          169 RVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       169 ~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      +.|++|++++||+||+||+|+ +|||||||+|++..
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~   36 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHG   36 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHS
T ss_pred             CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhC
Confidence            579999999999999999997 99999999998753


No 2  
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.60  E-value=2.7e-16  Score=113.58  Aligned_cols=39  Identities=26%  Similarity=0.347  Sum_probs=35.3

Q ss_pred             CCCCcccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          165 TNTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       165 ~~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      ......|++|+++.||+||+||+|+ +|||||||+|++..
T Consensus         4 ~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~   42 (63)
T 3dfx_A            4 RRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHN   42 (63)
T ss_dssp             CCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHS
T ss_pred             CCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcC
Confidence            4557889999999999999999997 99999999999854


No 3  
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.59  E-value=2.3e-16  Score=107.74  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=33.7

Q ss_pred             CCcccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          167 TIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       167 ~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      ..+.|++|++++||+||+||.|+ +|||||||+|++..
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~   39 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNG   39 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTC
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcC
Confidence            46789999999999999999997 99999999998753


No 4  
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.57  E-value=3.1e-16  Score=114.03  Aligned_cols=39  Identities=28%  Similarity=0.463  Sum_probs=35.4

Q ss_pred             CCCCCcccccCCCCCCCCccCCCCCCchhhhhhhhccccc
Q 027800          164 NTNTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPM  203 (218)
Q Consensus       164 ~~~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~  203 (218)
                      ..+....|++|++++||+||+||.|+ +|||||||+|++.
T Consensus         5 ~~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~   43 (66)
T 4gat_A            5 EQNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLH   43 (66)
T ss_dssp             CSSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHc
Confidence            34668999999999999999999997 9999999999873


No 5  
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.50  E-value=3.7e-15  Score=109.81  Aligned_cols=40  Identities=18%  Similarity=0.202  Sum_probs=32.0

Q ss_pred             CCCCcccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          165 TNTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       165 ~~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      ......|++|+|++||+||+||.+..+|||||||+|++..
T Consensus         5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~   44 (71)
T 2kae_A            5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYN   44 (71)
T ss_dssp             ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHH
T ss_pred             CCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhC
Confidence            4567899999999999999954444499999999999854


No 6  
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.34  E-value=3.4e-13  Score=106.25  Aligned_cols=39  Identities=26%  Similarity=0.357  Sum_probs=35.0

Q ss_pred             CCCCcccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          165 TNTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       165 ~~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      ......|++|+++.||+||+||+| ++|||||||+|++..
T Consensus        56 ~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~   94 (115)
T 4hc9_A           56 RRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHN   94 (115)
T ss_dssp             CCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHS
T ss_pred             ccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhC
Confidence            345689999999999999999999 899999999998744


No 7  
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.19  E-value=2.7e-12  Score=101.11  Aligned_cols=35  Identities=29%  Similarity=0.521  Sum_probs=30.6

Q ss_pred             CCCcccccCCCCCCCCccCCCCCCchhhhhhhhccc
Q 027800          166 NTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKL  201 (218)
Q Consensus       166 ~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryr  201 (218)
                      ...+.|++|+++.||+||+||.| .+|||||||+|+
T Consensus         3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~K   37 (115)
T 4hc9_A            3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHK   37 (115)
T ss_dssp             ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHH
T ss_pred             CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhh
Confidence            35689999999999999999999 699999999886


No 8  
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=74.34  E-value=2.5  Score=29.02  Aligned_cols=35  Identities=9%  Similarity=-0.057  Sum_probs=24.1

Q ss_pred             CCCCcccccCCCCCCCCccCCCCCCchhhhhhhhcccc
Q 027800          165 TNTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLP  202 (218)
Q Consensus       165 ~~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK  202 (218)
                      ......|..|+.+.  +-.....| ...|..||+-+..
T Consensus         8 ll~~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e   42 (58)
T 1dl6_A            8 ALPRVTCPNHPDAI--LVEDYRAG-DMICPECGLVVGD   42 (58)
T ss_dssp             CCSCCSBTTBSSSC--CEECSSSC-CEECTTTCCEECC
T ss_pred             ccccccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEec
Confidence            44556799998754  44444445 6899999998865


No 9  
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=71.85  E-value=1.3  Score=31.29  Aligned_cols=22  Identities=18%  Similarity=0.228  Sum_probs=18.2

Q ss_pred             cCCCCCCchhhhhhhhcccccc
Q 027800          183 RSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       183 R~GP~GpktLCNACGLryrK~~  204 (218)
                      ..||+||++-|.-||+.|--.+
T Consensus         6 ~~~~~~P~~eC~lC~vkYs~r~   27 (55)
T 2yrk_A            6 SGGTDGTKPECTLCGVKYSARL   27 (55)
T ss_dssp             CCCCCCCCSCCTTTTCCCCSSS
T ss_pred             CCCCCCCCccccccCccccccc
Confidence            3588999999999999997644


No 10 
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=66.28  E-value=2.3  Score=35.65  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=27.0

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhcccc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLP  202 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK  202 (218)
                      ...|++|+... |.|-+-..| ..+|-.|.-.-|.
T Consensus        42 n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~   74 (301)
T 2b0o_E           42 NSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHRE   74 (301)
T ss_dssp             TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred             CCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHh
Confidence            56999999965 999999999 7999999544444


No 11 
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=58.89  E-value=2.8  Score=27.29  Aligned_cols=32  Identities=19%  Similarity=0.302  Sum_probs=19.8

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhcccc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLP  202 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK  202 (218)
                      ...|..|+.+  ++-..-..| ...|..||+-|..
T Consensus         5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~e   36 (50)
T 1pft_A            5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVIEE   36 (50)
T ss_dssp             CCSCTTTSCC--CEEEETTTT-EEEESSSCCBCCC
T ss_pred             cEeCcCCCCc--ceEEcCCCC-eEECcccCCcccc
Confidence            4578888763  333222234 6888888887754


No 12 
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=58.61  E-value=2.5  Score=28.33  Aligned_cols=35  Identities=11%  Similarity=0.077  Sum_probs=26.0

Q ss_pred             CcccccCCCCC----CCCccCCCCCCc--hhhhhhhhcccc
Q 027800          168 IRVCADCNTTK----TPLWRSGPRGPK--VTKLILSIEKLP  202 (218)
Q Consensus       168 ~~~C~~Cgtt~----TP~WR~GP~Gpk--tLCNACGLryrK  202 (218)
                      ...|..|+-..    +-+||+..++..  ..|-.||-+|+-
T Consensus        15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~   55 (57)
T 1qyp_A           15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence            57899999754    458888776632  589999988763


No 13 
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=57.21  E-value=3.4  Score=32.88  Aligned_cols=36  Identities=22%  Similarity=0.330  Sum_probs=29.4

Q ss_pred             CCcccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          167 TIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       167 ~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      ....|++|+... |.|-.-..| -.+|-.|.-.-|.+.
T Consensus        26 ~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~lG   61 (134)
T 2iqj_A           26 DNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNLG   61 (134)
T ss_dssp             GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHC
T ss_pred             CCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcCC
Confidence            357999999875 999998889 789999977666643


No 14 
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.35  E-value=4.3  Score=32.54  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=28.4

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      ...|++|+.. -|.|-.-..| -.+|-.|.-.-|.+.
T Consensus        29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG   63 (141)
T 2crr_A           29 NKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLG   63 (141)
T ss_dssp             GSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHC
T ss_pred             CCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCC
Confidence            4789999986 5999998889 789999976666543


No 15 
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=55.99  E-value=4.7  Score=32.98  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=28.6

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhccccc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPM  203 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~  203 (218)
                      .+.|++|+... |.|-.-..| -.||-.|.-.-|.+
T Consensus        38 N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~L   71 (147)
T 3dwd_A           38 NNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGL   71 (147)
T ss_dssp             TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHH
T ss_pred             CCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcC
Confidence            56899999875 999998888 79999998766664


No 16 
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.14  E-value=5.5  Score=32.40  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=28.8

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      .+.|++|+.. -|.|-.-..| -.+|-.|.-.-|.+.
T Consensus        29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG   63 (149)
T 2crw_A           29 NKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSLG   63 (149)
T ss_dssp             TSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHHC
T ss_pred             CCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccCC
Confidence            5799999975 6999998889 789999987666653


No 17 
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=53.43  E-value=4  Score=32.74  Aligned_cols=35  Identities=29%  Similarity=0.378  Sum_probs=29.7

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      ...|++|+... |.|-+-..| -.+|-.|.-.-|.+.
T Consensus        36 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG   70 (138)
T 2owa_A           36 NRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKMG   70 (138)
T ss_dssp             GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTTC
T ss_pred             CCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCCC
Confidence            57999999875 999998889 789999988777764


No 18 
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=48.38  E-value=5.6  Score=27.63  Aligned_cols=36  Identities=14%  Similarity=0.205  Sum_probs=31.0

Q ss_pred             CCCCCccccc--CCCCCCCCccCCCCCCchhhhhhhhc
Q 027800          164 NTNTIRVCAD--CNTTKTPLWRSGPRGPKVTKLILSIE  199 (218)
Q Consensus       164 ~~~~~~~C~~--Cgtt~TP~WR~GP~GpktLCNACGLr  199 (218)
                      ......+|..  |++=--|.++=...|.+..||.|+.+
T Consensus         5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~   42 (59)
T 2yrc_A            5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQR   42 (59)
T ss_dssp             SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCE
T ss_pred             CCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCc
Confidence            3456789998  99999999988888889999999875


No 19 
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=47.34  E-value=8  Score=31.05  Aligned_cols=31  Identities=16%  Similarity=0.202  Sum_probs=21.5

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIE  199 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLr  199 (218)
                      --.|..|+...|-+=+++-. --.-|+|||-+
T Consensus       103 yVlC~~C~sPdT~l~k~~r~-~~l~C~ACGa~  133 (139)
T 3cw2_K          103 YVECSTCKSLDTILKKEKKS-WYIVCLACGAQ  133 (139)
T ss_dssp             CSSCCSSSSSCCCSCSSCST-TTSSCCC----
T ss_pred             eeECCCCCCcCcEEEEeCCe-EEEEecCCCCC
Confidence            36899999999999887532 34789999964


No 20 
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=46.98  E-value=10  Score=33.45  Aligned_cols=9  Identities=44%  Similarity=0.671  Sum_probs=4.4

Q ss_pred             CcccccCCC
Q 027800          168 IRVCADCNT  176 (218)
Q Consensus       168 ~~~C~~Cgt  176 (218)
                      ..+|..||+
T Consensus        42 ~~vC~~CG~   50 (345)
T 3k7a_M           42 DVVCALCGL   50 (345)
T ss_dssp             SCCCSSSCC
T ss_pred             CEecCCCCe
Confidence            445555553


No 21 
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=46.36  E-value=4.4  Score=32.93  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=28.6

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      .+.|++|+... |.|-.-..| ..+|-.|.-.-|.+.
T Consensus        37 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG   71 (144)
T 2p57_A           37 NKACFDCGAKN-PSWASITYG-VFLCIDCSGVHRSLG   71 (144)
T ss_dssp             GGBCTTTCCBS-CCEEEGGGT-EEECHHHHHHHHHHC
T ss_pred             CCcCCCCcCCC-CCeEEeccC-EEEhhhchHHHcCCC
Confidence            57999999864 999888888 789999987666643


No 22 
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=46.09  E-value=2  Score=35.93  Aligned_cols=46  Identities=13%  Similarity=0.255  Sum_probs=31.1

Q ss_pred             cccccCCCCCCCCccCCC-CCCchhhhhhhhccccccceeeeeeccc
Q 027800          169 RVCADCNTTKTPLWRSGP-RGPKVTKLILSIEKLPMLVFFFCVYIIN  214 (218)
Q Consensus       169 ~~C~~Cgtt~TP~WR~GP-~GpktLCNACGLryrK~~~~f~c~yi~~  214 (218)
                      -.|..|+...|-+=+..- .---.-|+|||-+.-=-...-+|.||+.
T Consensus        97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V~~~~kl~t~i~k  143 (170)
T 2g2k_A           97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILK  143 (170)
T ss_dssp             HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCSCSSSSHHHHHHT
T ss_pred             EECCCCCCCccEEEEecCCCEEEEEccccCCccccccccceeeeeee
Confidence            579999999998888311 1123679999976544444456777763


No 23 
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=44.46  E-value=8.1  Score=31.43  Aligned_cols=30  Identities=13%  Similarity=0.182  Sum_probs=23.3

Q ss_pred             cccccCCCCCCCCccCCCCCCchhhhhhhhc
Q 027800          169 RVCADCNTTKTPLWRSGPRGPKVTKLILSIE  199 (218)
Q Consensus       169 ~~C~~Cgtt~TP~WR~GP~GpktLCNACGLr  199 (218)
                      -.|..|+...|-+=+.+- ---.-|+|||-+
T Consensus       105 VlC~~C~sPdT~L~k~~r-~~~l~C~ACGa~  134 (148)
T 2d74_B          105 VICPVCGSPDTKIIKRDR-FHFLKCEACGAE  134 (148)
T ss_dssp             SSCSSSCCTTCCCCBSSS-SBCCCCSSSCCC
T ss_pred             EECCCCCCcCcEEEEeCC-EEEEEecCCCCC
Confidence            579999999998888652 234689999965


No 24 
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.31  E-value=2.6  Score=34.72  Aligned_cols=45  Identities=13%  Similarity=0.259  Sum_probs=30.6

Q ss_pred             cccccCCCCCCCCccC-CCCCCchhhhhhhhccccccceeeeeecc
Q 027800          169 RVCADCNTTKTPLWRS-GPRGPKVTKLILSIEKLPMLVFFFCVYII  213 (218)
Q Consensus       169 ~~C~~Cgtt~TP~WR~-GP~GpktLCNACGLryrK~~~~f~c~yi~  213 (218)
                      -.|..|+...|-+=+. .-.---.-|+|||-+.-=-....+|.||+
T Consensus       104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~V~~~~Kl~~~i~  149 (157)
T 2e9h_A          104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFIL  149 (157)
T ss_dssp             TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEECCCCSSHHHHHH
T ss_pred             EECCCCCCCccEEEEecCCCEEEEEccCCCCCCcccchhhhhhhhh
Confidence            5799999999988862 11112357999998654444456666665


No 25 
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=41.29  E-value=7.4  Score=26.08  Aligned_cols=36  Identities=14%  Similarity=0.104  Sum_probs=25.5

Q ss_pred             CCCcccccCCCCCCCCc----cCCCCCCc--hhhhhhhhccc
Q 027800          166 NTIRVCADCNTTKTPLW----RSGPRGPK--VTKLILSIEKL  201 (218)
Q Consensus       166 ~~~~~C~~Cgtt~TP~W----R~GP~Gpk--tLCNACGLryr  201 (218)
                      .....|..|+-...--|    |+..++..  ..|..||-+|+
T Consensus         7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~   48 (50)
T 1tfi_A            7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK   48 (50)
T ss_dssp             CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred             eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence            34568999998765433    77766633  47989998875


No 26 
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=38.84  E-value=10  Score=30.30  Aligned_cols=36  Identities=19%  Similarity=0.185  Sum_probs=30.0

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhccccccc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPMLV  205 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~~  205 (218)
                      ...|++|+.. -|.|-+-..| -.+|-.|.-.-|.+..
T Consensus        25 N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~LG~   60 (140)
T 2olm_A           25 NRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRGLNP   60 (140)
T ss_dssp             GGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred             CCcCCCCCCC-CCCceeeccC-EEEchhccchhccCCC
Confidence            5789999986 6999998889 7899999877777643


No 27 
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=37.86  E-value=8.6  Score=30.85  Aligned_cols=30  Identities=20%  Similarity=0.380  Sum_probs=23.4

Q ss_pred             cccccCCCCCCCCccCCCCCCchhhhhhhhc
Q 027800          169 RVCADCNTTKTPLWRSGPRGPKVTKLILSIE  199 (218)
Q Consensus       169 ~~C~~Cgtt~TP~WR~GP~GpktLCNACGLr  199 (218)
                      -.|..|+...|-+=+++-. --.-|+|||-+
T Consensus       103 VlC~~C~sPdT~l~k~~r~-~~l~C~ACGa~  132 (138)
T 1nee_A          103 VICHECNRPDTRIIREGRI-SLLKCEACGAK  132 (138)
T ss_dssp             HHHTCCSSCSSCCEEETTT-TEEECSTTSCC
T ss_pred             EECCCCCCcCcEEEEcCCe-EEEEccCCCCC
Confidence            5799999999998886522 34789999964


No 28 
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=36.97  E-value=15  Score=30.24  Aligned_cols=36  Identities=19%  Similarity=0.135  Sum_probs=24.7

Q ss_pred             CCCcccccCCCCCC---CCc-cCCCCCCc--hhhhhhhhccc
Q 027800          166 NTIRVCADCNTTKT---PLW-RSGPRGPK--VTKLILSIEKL  201 (218)
Q Consensus       166 ~~~~~C~~Cgtt~T---P~W-R~GP~Gpk--tLCNACGLryr  201 (218)
                      .....|..|+-...   ..+ |++.+|..  ..|..||-+|+
T Consensus       135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~  176 (178)
T 3po3_S          135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK  176 (178)
T ss_dssp             BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred             cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence            34568999997653   333 66555533  47999999997


No 29 
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=36.95  E-value=13  Score=32.58  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=27.8

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhccccc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPM  203 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~  203 (218)
                      ...|++|+.. -|.|-+-..| ..+|-.|.-.-|.+
T Consensus        45 n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~~~hr~l   78 (368)
T 3jue_A           45 NAQCCDCREP-APEWASINLG-VTLCIQCSGIHRSL   78 (368)
T ss_dssp             TTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHH
T ss_pred             cCcCCCCCCC-CCCeEEecCC-eEEcHhHHHHHhcc
Confidence            5789999985 6999998889 79999997555554


No 30 
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=36.29  E-value=9.6  Score=31.67  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=28.6

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      .+.|++|+.. -|.|-+-..| -.||-.|.-.-|.+.
T Consensus        22 N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~LG   56 (163)
T 3sub_A           22 NNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRSLG   56 (163)
T ss_dssp             GGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHTC
T ss_pred             CCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcCCC
Confidence            5689999986 6999998888 799999976555543


No 31 
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=35.39  E-value=9.8  Score=32.63  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=27.8

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhccccc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPM  203 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~  203 (218)
                      ...|++|+.. -|.|-+-..| -.+|-.|.-.-|.+
T Consensus        37 n~~c~dc~~~-~~~~~~~~~~-~~~c~~c~~~hr~~   70 (329)
T 3o47_A           37 NNVCFECGAF-NPQWVSVTYG-IWICLECSGRHRGL   70 (329)
T ss_dssp             TTBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHHH
T ss_pred             CCcCCCCCCC-CCCeEEecCC-EEEChhhhhhhccc
Confidence            5689999985 6799888888 79999998666664


No 32 
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=34.52  E-value=10  Score=33.49  Aligned_cols=35  Identities=17%  Similarity=0.166  Sum_probs=25.5

Q ss_pred             CCcccccCCCCCCCCc----cCCCCCCc--hhhhhhhhccc
Q 027800          167 TIRVCADCNTTKTPLW----RSGPRGPK--VTKLILSIEKL  201 (218)
Q Consensus       167 ~~~~C~~Cgtt~TP~W----R~GP~Gpk--tLCNACGLryr  201 (218)
                      ....|..|+-...-.|    |++.+|-.  ..|..||-+|+
T Consensus       267 ~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~  307 (309)
T 1pqv_S          267 DRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK  307 (309)
T ss_pred             ccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence            3568999998775444    66766633  58999999885


No 33 
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=33.72  E-value=4  Score=25.76  Aligned_cols=30  Identities=13%  Similarity=0.388  Sum_probs=20.9

Q ss_pred             ccccCCCCCCCCccCCCCCCchhhhhhhhcc
Q 027800          170 VCADCNTTKTPLWRSGPRGPKVTKLILSIEK  200 (218)
Q Consensus       170 ~C~~Cgtt~TP~WR~GP~GpktLCNACGLry  200 (218)
                      .|..|+...|-+=+++-. --.-|+|||-+.
T Consensus         2 lC~~C~~peT~l~~~~~~-~~l~C~aCG~~~   31 (36)
T 1k81_A            2 ICRECGKPDTKIIKEGRV-HLLKCMACGAIR   31 (36)
T ss_dssp             CCSSSCSCEEEEEEETTE-EEEEEETTTEEE
T ss_pred             CCcCCCCCCcEEEEeCCc-EEEEhhcCCCcc
Confidence            488899988888775411 124599999653


No 34 
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=31.14  E-value=14  Score=28.99  Aligned_cols=34  Identities=15%  Similarity=0.061  Sum_probs=24.2

Q ss_pred             CCCCCcccccCCCCCCCCccCCCCCCchhhhhhhhccccc
Q 027800          164 NTNTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPM  203 (218)
Q Consensus       164 ~~~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~  203 (218)
                      ......+|..||..-.-.      ++...|-.||-..++.
T Consensus       128 ~~~~~y~C~~Cg~~~~~~------~~~~~Cp~CG~~~~~~  161 (165)
T 2lcq_A          128 VIKWRYVCIGCGRKFSTL------PPGGVCPDCGSKVKLI  161 (165)
T ss_dssp             CCCCCEEESSSCCEESSC------CGGGBCTTTCCBEEEC
T ss_pred             cccEEEECCCCCCcccCC------CCCCcCCCCCCcceeC
Confidence            345578999999765422      4457999999886653


No 35 
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=30.82  E-value=18  Score=30.95  Aligned_cols=32  Identities=13%  Similarity=0.122  Sum_probs=23.4

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhccccc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPM  203 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~  203 (218)
                      .+.|..||.....    ...|.+..|.+||..+-..
T Consensus       107 ~~fC~~CG~~~~~----~~~~~~~~C~~C~~~~yp~  138 (269)
T 1vk6_A          107 HKYCGYCGHEMYP----SKTEWAMLCSHCRERYYPQ  138 (269)
T ss_dssp             TSBCTTTCCBEEE----CSSSSCEEESSSSCEECCC
T ss_pred             CCccccCCCcCcc----CCCceeeeCCCCCCEecCC
Confidence            5689999977654    2456778999999865543


No 36 
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=27.43  E-value=20  Score=35.44  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=29.1

Q ss_pred             CCcccccCCCCCCCCccCCCCCCchhhhhhhhcc
Q 027800          167 TIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEK  200 (218)
Q Consensus       167 ~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLry  200 (218)
                      ...+|..|++=--|-.+=...|.+..||-|+.+-
T Consensus       111 ~pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N  144 (810)
T 1pcx_A          111 LIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLAN  144 (810)
T ss_dssp             CCCBCTTTCCBCCTTCEEETTTTEEECTTTCCEE
T ss_pred             CCCccCCccCEecCceEEeCCCCEEEccCCCCcC
Confidence            3789999999999988777778899999998653


No 37 
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.94  E-value=32  Score=26.01  Aligned_cols=36  Identities=11%  Similarity=0.205  Sum_probs=25.1

Q ss_pred             CCcccccCCCCCCCCc----cCCCCCCc--hhhhhhhhcccc
Q 027800          167 TIRVCADCNTTKTPLW----RSGPRGPK--VTKLILSIEKLP  202 (218)
Q Consensus       167 ~~~~C~~Cgtt~TP~W----R~GP~Gpk--tLCNACGLryrK  202 (218)
                      ....|..|+-...--|    |+..++..  ..|-.||-+|+.
T Consensus        71 ~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~~  112 (113)
T 3h0g_I           71 SDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE  112 (113)
T ss_dssp             CCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCCC
T ss_pred             cccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEec
Confidence            3478999998764333    67766633  249999999874


No 38 
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=26.21  E-value=26  Score=31.16  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCCCccCCCCCCchhhhhhhhcccc
Q 027800          167 TIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLP  202 (218)
Q Consensus       167 ~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK  202 (218)
                      ....|++|+. .-|.|-+-..| -.+|-.|.=.-|.
T Consensus        22 ~n~~c~dc~~-~~p~w~s~~~~-~~~c~~c~~~hr~   55 (497)
T 3lvq_E           22 GNSQCCDCGA-ADPTWLSTNLG-VLTCIQCSGVHRE   55 (497)
T ss_dssp             TTTBCTTTCC-BSCCEEETTTT-EEECHHHHHHHHH
T ss_pred             CCCcccCCCC-CCCCEEEechh-HHhHHhhHHHHHh
Confidence            3678999995 56899988888 7899999644444


No 39 
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=26.11  E-value=19  Score=35.45  Aligned_cols=34  Identities=12%  Similarity=0.120  Sum_probs=29.3

Q ss_pred             CCCcccccCCCCCCCCccCCCCCCchhhhhhhhc
Q 027800          166 NTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIE  199 (218)
Q Consensus       166 ~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLr  199 (218)
                      ....+|..|++=--|-.+=...|.+..||-|+.+
T Consensus        96 ~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~  129 (770)
T 3efo_B           96 SGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCV  129 (770)
T ss_dssp             TCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCE
T ss_pred             CCCCccCCCCCCcCCceEEecCCCEEEecccccc
Confidence            4578999999999998877777889999999875


No 40 
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=25.87  E-value=23  Score=35.92  Aligned_cols=33  Identities=15%  Similarity=0.226  Sum_probs=28.8

Q ss_pred             CCcccccCCCCCCCCccCCCCCCchhhhhhhhc
Q 027800          167 TIRVCADCNTTKTPLWRSGPRGPKVTKLILSIE  199 (218)
Q Consensus       167 ~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLr  199 (218)
                      ...+|..|++=--|-.+=...|.+..||-|+.+
T Consensus       227 ~pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~  259 (926)
T 1m2v_B          227 LIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLA  259 (926)
T ss_dssp             CCCBCSSSCCBCCTTCEEETTTTEEECTTTCCE
T ss_pred             CCCccCCccCEecCceEEeCCCCEEEccCCCCC
Confidence            378999999999998877777889999999865


No 41 
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=25.17  E-value=14  Score=28.49  Aligned_cols=10  Identities=0%  Similarity=-0.486  Sum_probs=6.1

Q ss_pred             hhhhhhhccc
Q 027800          192 TKLILSIEKL  201 (218)
Q Consensus       192 LCNACGLryr  201 (218)
                      +||+||....
T Consensus        77 vCn~CGkPI~   86 (96)
T 3mhs_E           77 VCEKCGKPLA   86 (96)
T ss_dssp             EETTTCCEEC
T ss_pred             hhhccCCcee
Confidence            6777765543


No 42 
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=25.15  E-value=26  Score=24.87  Aligned_cols=31  Identities=19%  Similarity=0.253  Sum_probs=23.3

Q ss_pred             CCCcccccCCCCCCCCccCCCCCCchhhhhhhhccc
Q 027800          166 NTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKL  201 (218)
Q Consensus       166 ~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryr  201 (218)
                      ...-.|..|++..+..     .+...-|.-||-|+.
T Consensus        19 ~v~Y~C~~Cg~~~~l~-----~~~~iRC~~CG~RIL   49 (63)
T 3h0g_L           19 TMIYLCADCGARNTIQ-----AKEVIRCRECGHRVM   49 (63)
T ss_dssp             CCCCBCSSSCCBCCCC-----SSSCCCCSSSCCCCC
T ss_pred             CeEEECCCCCCeeecC-----CCCceECCCCCcEEE
Confidence            4568999999988755     234578999997653


No 43 
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=24.41  E-value=23  Score=31.68  Aligned_cols=34  Identities=29%  Similarity=0.358  Sum_probs=28.9

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhccccc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPM  203 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~  203 (218)
                      ...|++|++. -|.|-+-..| -.||-.|.-.-|.+
T Consensus        34 N~~C~dC~~~-~p~w~s~~~g-~~~C~~Csg~hr~l   67 (386)
T 3lju_X           34 NARCADCGAP-DPDWASYTLG-VFICLSCSGIHRNI   67 (386)
T ss_dssp             GSBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHTC
T ss_pred             CCcCccCCCC-CCCeEEeccc-EEEhhhhchHhhCC
Confidence            4579999986 7999998888 79999998777766


No 44 
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.40  E-value=18  Score=27.26  Aligned_cols=33  Identities=12%  Similarity=0.136  Sum_probs=23.8

Q ss_pred             CCCCcccccCCCCCCCCccCCCCCCch-hhhhhhhccccc
Q 027800          165 TNTIRVCADCNTTKTPLWRSGPRGPKV-TKLILSIEKLPM  203 (218)
Q Consensus       165 ~~~~~~C~~Cgtt~TP~WR~GP~Gpkt-LCNACGLryrK~  203 (218)
                      .....+|.+||..-+..      .+.. .|-+||-...+.
T Consensus        70 ~p~~~~C~~CG~~~e~~------~~~~~~CP~Cgs~~~~i  103 (119)
T 2kdx_A           70 EKVELECKDCSHVFKPN------ALDYGVCEKCHSKNVII  103 (119)
T ss_dssp             ECCEEECSSSSCEECSC------CSTTCCCSSSSSCCCEE
T ss_pred             ccceEEcCCCCCEEeCC------CCCCCcCccccCCCcEE
Confidence            34579999999887662      2345 899999886553


No 45 
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=23.53  E-value=18  Score=35.53  Aligned_cols=34  Identities=15%  Similarity=0.163  Sum_probs=28.5

Q ss_pred             CCCcccccCCCCCCCCccCCCCCCchhhhhhhhc
Q 027800          166 NTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIE  199 (218)
Q Consensus       166 ~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLr  199 (218)
                      ....+|..|++=--|-.+=...|.+..||-|+.+
T Consensus        92 ~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~  125 (766)
T 3eh2_A           92 SGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCI  125 (766)
T ss_dssp             GCCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCE
T ss_pred             CCCCccCCCCCEeCCceEEecCCCEEEecccccc
Confidence            3578999999999997765557889999999975


No 46 
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=23.28  E-value=34  Score=26.20  Aligned_cols=35  Identities=17%  Similarity=0.199  Sum_probs=25.6

Q ss_pred             CcccccCCCCCCCCc----cCCCCCCc--hhhhhhhhcccc
Q 027800          168 IRVCADCNTTKTPLW----RSGPRGPK--VTKLILSIEKLP  202 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~W----R~GP~Gpk--tLCNACGLryrK  202 (218)
                      ...|..|+-...--|    |++.+|..  ..|-.||-+|+.
T Consensus        72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~  112 (122)
T 1twf_I           72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTS  112 (122)
T ss_dssp             CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred             CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEecc
Confidence            578999998764333    77776643  479999999875


No 47 
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=23.09  E-value=29  Score=34.11  Aligned_cols=33  Identities=21%  Similarity=0.176  Sum_probs=26.5

Q ss_pred             CCCcccccCCCCCCCCccCCCCCCchhhhhhhhc
Q 027800          166 NTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIE  199 (218)
Q Consensus       166 ~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLr  199 (218)
                      ....+|..|++=--|-.+= .+|.+..||-|+.+
T Consensus        83 ~~p~RC~rCrayiNPf~~f-~~~~~w~Cn~C~~~  115 (751)
T 3eh1_A           83 NTIVRCRSCRTYINPFVSF-IDQRRWKCNLCYRV  115 (751)
T ss_dssp             SCCCBCTTTCCBCCTTCEE-SSSSEEECTTTCCE
T ss_pred             CCCCcccCccCEeCCceEE-ecCCEEEcccccCC
Confidence            3579999999999997654 34678999999864


No 48 
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=22.54  E-value=24  Score=25.29  Aligned_cols=29  Identities=17%  Similarity=0.212  Sum_probs=21.1

Q ss_pred             CCCCcccccCCCCCCCCccCCCCCCchhhhhhhh
Q 027800          165 TNTIRVCADCNTTKTPLWRSGPRGPKVTKLILSI  198 (218)
Q Consensus       165 ~~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGL  198 (218)
                      ....-.|..||......     .+...-|..||-
T Consensus        25 ~~v~Y~C~~CG~~~e~~-----~~d~irCp~CG~   53 (70)
T 1twf_L           25 ATLKYICAECSSKLSLS-----RTDAVRCKDCGH   53 (70)
T ss_dssp             CCCCEECSSSCCEECCC-----TTSTTCCSSSCC
T ss_pred             ceEEEECCCCCCcceeC-----CCCCccCCCCCc
Confidence            44567899999986654     222468999997


No 49 
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=22.21  E-value=28  Score=24.70  Aligned_cols=32  Identities=13%  Similarity=0.112  Sum_probs=21.5

Q ss_pred             CCCcccccCCCCCCCCccCCCCCCchhhhhhhhccc
Q 027800          166 NTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKL  201 (218)
Q Consensus       166 ~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryr  201 (218)
                      -.+..|-.|+.   |+--..-.| ...|.+||+.|.
T Consensus         8 LeiL~CP~ck~---~L~~~~~~g-~LvC~~c~~~YP   39 (67)
T 2jny_A            8 LEVLACPKDKG---PLRYLESEQ-LLVNERLNLAYR   39 (67)
T ss_dssp             TCCCBCTTTCC---BCEEETTTT-EEEETTTTEEEE
T ss_pred             HHHhCCCCCCC---cCeEeCCCC-EEEcCCCCcccc
Confidence            45678998887   332222234 688999999884


No 50 
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=21.55  E-value=26  Score=28.75  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCCCccCCCCCCchhhhhhhhcccc
Q 027800          167 TIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLP  202 (218)
Q Consensus       167 ~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK  202 (218)
                      ....|++||.. -|.|-+-..| -.+|-.|.-..|.
T Consensus        16 ~n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~~~hr~   49 (278)
T 1dcq_A           16 GNDVCCDCGAP-DPTWLSTNLG-ILTCIECSGIHRE   49 (278)
T ss_dssp             TTTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHH
T ss_pred             CCCcCCCCCCC-CCCeEEecCC-eEEcHHHHHHHhh
Confidence            35789999997 4699998889 6899999443333


No 51 
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=21.24  E-value=13  Score=30.34  Aligned_cols=29  Identities=21%  Similarity=0.278  Sum_probs=20.4

Q ss_pred             CCcccccCCCCCCCCccCCCCCCchhhhhhhhccc
Q 027800          167 TIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKL  201 (218)
Q Consensus       167 ~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryr  201 (218)
                      ..++|..||-..+     |..-| ..|-.||..-.
T Consensus       154 ~~~~C~~CG~~~~-----g~~~p-~~CP~C~~~k~  182 (191)
T 1lko_A          154 TKWRCRNCGYVHE-----GTGAP-ELCPACAHPKA  182 (191)
T ss_dssp             EEEEETTTCCEEE-----EEECC-SBCTTTCCBGG
T ss_pred             ceEEECCCCCEee-----CCCCC-CCCCCCcCCHH
Confidence            3799999997755     43333 28999998643


No 52 
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.77  E-value=28  Score=24.85  Aligned_cols=33  Identities=15%  Similarity=0.085  Sum_probs=21.7

Q ss_pred             CCCCcccccCCCCCCCCccCCCCCCchhhhhhhhccc
Q 027800          165 TNTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKL  201 (218)
Q Consensus       165 ~~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryr  201 (218)
                      .-....|-.|+..   +--..-.| ...|.+||+.|-
T Consensus         5 LL~iL~CP~ck~~---L~~~~~~~-~LiC~~cg~~YP   37 (70)
T 2js4_A            5 LLDILVCPVCKGR---LEFQRAQA-ELVCNADRLAFP   37 (70)
T ss_dssp             CCCCCBCTTTCCB---EEEETTTT-EEEETTTTEEEE
T ss_pred             HhhheECCCCCCc---CEEeCCCC-EEEcCCCCceec
Confidence            3457789999873   22121234 688999999884


No 53 
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=20.28  E-value=21  Score=31.73  Aligned_cols=11  Identities=9%  Similarity=0.015  Sum_probs=5.9

Q ss_pred             chhhhhhhhcc
Q 027800          190 KVTKLILSIEK  200 (218)
Q Consensus       190 ktLCNACGLry  200 (218)
                      .+.|..||+-+
T Consensus        42 ~~vC~~CGlVl   52 (345)
T 4bbr_M           42 DVVCALCGLVL   52 (345)
T ss_dssp             EEEETTTCBEE
T ss_pred             cEEeCCCCCCc
Confidence            45555555544


Done!