BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027801
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C2Y|A Chain A, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|B Chain B, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|C Chain C, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|D Chain D, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|E Chain E, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|F Chain F, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|G Chain G, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|H Chain H, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|I Chain I, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|J Chain J, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|K Chain K, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|L Chain L, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|M Chain M, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|N Chain N, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|O Chain O, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|P Chain P, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|Q Chain Q, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|R Chain R, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|S Chain S, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|T Chain T, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
Length = 156
Score = 258 bits (660), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 119/156 (76%), Positives = 142/156 (91%), Gaps = 1/156 (0%)
Query: 63 VRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI 122
+ L G++TK + RFA+VVARFNE VT+ L+EGAL+TFKKYSV E+ IDVVWVPG++E+
Sbjct: 1 MNELEGYVTKAQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNED-IDVVWVPGAYEL 59
Query: 123 GVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCD 182
GV AQ LGKSGKY A++C+GAVV+GDT+HYDAV NSA+SGVLSAG+NSGVPC+FGVLTCD
Sbjct: 60 GVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCD 119
Query: 183 NMDQALNRAGGKSGNKGAEAALTAIEMASLFEHHLK 218
NMDQA+NRAGGK+GNKGAE+ALTAIEMASLFEHHLK
Sbjct: 120 NMDQAINRAGGKAGNKGAESALTAIEMASLFEHHLK 155
>pdb|1VSW|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
Length = 153
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 106/151 (70%), Gaps = 5/151 (3%)
Query: 65 HLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV 124
HL G GL+ +VV RFNE +T LL GAL+ K++ V+E +IDV WVPG+FEI +
Sbjct: 6 HLVG-----TGLKVGVVVGRFNEFITSKLLGGALDGLKRHGVEENDIDVAWVPGAFEIPL 60
Query: 125 VAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNM 184
+A+++ SGKY AV+ +G V+RG TTHYD V N A GV S + + +P IFGVLT + +
Sbjct: 61 IAKKMANSGKYDAVITLGTVIRGATTHYDYVCNEVAKGVASLSLQTDIPVIFGVLTTETI 120
Query: 185 DQALNRAGGKSGNKGAEAALTAIEMASLFEH 215
+QA+ RAG K+GNKG E+A+ AIEMA L +H
Sbjct: 121 EQAIERAGTKAGNKGYESAVAAIEMAHLSKH 151
>pdb|1RVV|A Chain A, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|B Chain B, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|C Chain C, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|D Chain D, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|E Chain E, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|F Chain F, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|G Chain G, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|H Chain H, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|I Chain I, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|J Chain J, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|K Chain K, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|L Chain L, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|M Chain M, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|N Chain N, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|O Chain O, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|P Chain P, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|Q Chain Q, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|R Chain R, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|S Chain S, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|T Chain T, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|U Chain U, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|V Chain V, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|W Chain W, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|X Chain X, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|Y Chain Y, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|Z Chain Z, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|1 Chain 1, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|2 Chain 2, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|3 Chain 3, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|4 Chain 4, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1ZIS|A Chain A, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|B Chain B, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|C Chain C, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|D Chain D, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|E Chain E, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|F Chain F, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|G Chain G, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|H Chain H, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|I Chain I, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|J Chain J, Recombinant Lumazine Synthase (hexagonal Form)
Length = 154
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 98/138 (71%)
Query: 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGK 134
GL+ +VV RFN+ +T LL GA + ++ V +IDV WVPG+FEI A+++ ++ K
Sbjct: 12 GLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKK 71
Query: 135 YTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGK 194
Y A++ +G V+RG TTHYD V N AA G+ A +GVP IFG++T +N++QA+ RAG K
Sbjct: 72 YDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAGTK 131
Query: 195 SGNKGAEAALTAIEMASL 212
+GNKG + A++AIEMA+L
Sbjct: 132 AGNKGVDCAVSAIEMANL 149
>pdb|3MK3|A Chain A, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|B Chain B, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|C Chain C, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|D Chain D, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|E Chain E, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|F Chain F, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|G Chain G, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|H Chain H, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|I Chain I, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|J Chain J, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|K Chain K, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|L Chain L, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|M Chain M, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|N Chain N, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|O Chain O, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|P Chain P, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|Q Chain Q, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|R Chain R, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|S Chain S, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|T Chain T, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|U Chain U, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|V Chain V, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|W Chain W, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|X Chain X, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|Y Chain Y, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|Z Chain Z, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|1 Chain 1, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|2 Chain 2, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|3 Chain 3, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|4 Chain 4, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|5 Chain 5, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|6 Chain 6, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|7 Chain 7, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|8 Chain 8, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|9 Chain 9, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|AA Chain a, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|BB Chain b, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|CC Chain c, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|DD Chain d, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|EE Chain e, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|FF Chain f, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|GG Chain g, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|HH Chain h, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|II Chain i, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|JJ Chain j, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|KK Chain k, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|LL Chain l, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|MM Chain m, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|NN Chain n, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|OO Chain o, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|PP Chain p, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|QQ Chain q, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|RR Chain r, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|SS Chain s, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|TT Chain t, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|UU Chain u, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|VV Chain v, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|WW Chain w, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|XX Chain x, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|YY Chain y, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|A Chain A, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|B Chain B, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|C Chain C, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|D Chain D, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|E Chain E, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|F Chain F, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|G Chain G, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|H Chain H, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|I Chain I, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|J Chain J, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|K Chain K, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|L Chain L, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|M Chain M, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|N Chain N, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|O Chain O, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|P Chain P, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|Q Chain Q, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|R Chain R, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|S Chain S, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|T Chain T, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|U Chain U, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|V Chain V, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|W Chain W, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|X Chain X, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|Y Chain Y, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|Z Chain Z, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|1 Chain 1, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|2 Chain 2, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|3 Chain 3, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|4 Chain 4, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
Length = 156
Score = 146 bits (368), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 102/139 (73%), Gaps = 1/139 (0%)
Query: 77 RFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIGVVAQQLGKSGKY 135
R A+ +ARFN+ + LL+GA++ + VK++NI VVWVPG++E+ + + L KSGKY
Sbjct: 14 RVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKY 73
Query: 136 TAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGKS 195
AV+ +G V+RG T H++ VA A++G+ S +SGVP FGVLT ++++QA+ RAG K+
Sbjct: 74 DAVVALGTVIRGGTAHFEYVAGGASNGLASVAQDSGVPVAFGVLTTESIEQAIERAGTKA 133
Query: 196 GNKGAEAALTAIEMASLFE 214
GNKGAEAALTA+EM ++ +
Sbjct: 134 GNKGAEAALTALEMINVLK 152
>pdb|1HQK|A Chain A, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|B Chain B, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|C Chain C, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|D Chain D, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|E Chain E, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1NQU|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQV|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQW|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQX|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
Length = 154
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 95/141 (67%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSG 133
EGLRF +V +RFN + L+EGA++ ++ +EE+I +V VPGS+EI V A +L +
Sbjct: 11 EGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKE 70
Query: 134 KYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGG 193
AV+ IG ++RG T H+D +A+ + G+ + + P FGV+T D ++QA+ RAG
Sbjct: 71 DIDAVIAIGVLIRGATPHFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERAGT 130
Query: 194 KSGNKGAEAALTAIEMASLFE 214
K GNKG EAAL+AIEMA+LF+
Sbjct: 131 KHGNKGWEAALSAIEMANLFK 151
>pdb|1KZ6|A Chain A, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
pdb|1KZ6|B Chain B, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
pdb|1KZ6|C Chain C, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
pdb|1KZ6|D Chain D, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
pdb|1KZ6|E Chain E, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
Length = 159
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 85/141 (60%), Gaps = 2/141 (1%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETF-KKYSVKEENIDVVWVPGSFEIGVVAQQLG 130
K LR +V AR+N + L++GA+ET +K+ VK ENID+ VPGS+E+ +
Sbjct: 14 KGPELRILIVHARWNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSYELPQGIRASI 73
Query: 131 KSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR 190
Y AV+ IG +++G T H++ ++ + G++ G++SGVP IFG+LT N +QAL R
Sbjct: 74 ARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVIFGLLTVLNEEQALYR 133
Query: 191 AGGKSG-NKGAEAALTAIEMA 210
AG G N G + A+EM
Sbjct: 134 AGLNGGHNHGNDWGSAAVEMG 154
>pdb|1KZ9|A Chain A, Mutant Enzyme L119f Lumazine Synthase From S.pombe
pdb|1KZ9|B Chain B, Mutant Enzyme L119f Lumazine Synthase From S.pombe
pdb|1KZ9|C Chain C, Mutant Enzyme L119f Lumazine Synthase From S.pombe
pdb|1KZ9|D Chain D, Mutant Enzyme L119f Lumazine Synthase From S.pombe
pdb|1KZ9|E Chain E, Mutant Enzyme L119f Lumazine Synthase From S.pombe
Length = 159
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 85/141 (60%), Gaps = 2/141 (1%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETF-KKYSVKEENIDVVWVPGSFEIGVVAQQLG 130
K LR +V AR+N + L++GA+ET +K+ VK ENID+ VPGS+E+ +
Sbjct: 14 KGPELRILIVHARWNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASI 73
Query: 131 KSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR 190
Y AV+ IG +++G T H++ ++ + G++ G++SGVP IFG+LT N +QAL R
Sbjct: 74 ARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVIFGLLTVLNEEQALYR 133
Query: 191 AGGKSG-NKGAEAALTAIEMA 210
AG G N G + A+EM
Sbjct: 134 AGLNGGHNHGNDWGSAAVEMG 154
>pdb|2A57|A Chain A, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|B Chain B, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|C Chain C, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|D Chain D, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|E Chain E, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A58|A Chain A, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|B Chain B, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|C Chain C, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|D Chain D, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|E Chain E, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A59|A Chain A, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|B Chain B, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|C Chain C, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|D Chain D, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|E Chain E, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
Length = 159
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 84/141 (59%), Gaps = 2/141 (1%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETF-KKYSVKEENIDVVWVPGSFEIGVVAQQLG 130
K LR +V AR+N + L++GA+ET +K+ VK ENID+ VPGS+E+ +
Sbjct: 14 KGPELRILIVHARYNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASI 73
Query: 131 KSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR 190
Y AV+ IG +++G T H++ ++ + G++ G++SGVP I G+LT N +QAL R
Sbjct: 74 ARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALYR 133
Query: 191 AGGKSG-NKGAEAALTAIEMA 210
AG G N G + A+EM
Sbjct: 134 AGLNGGHNHGNDWGSAAVEMG 154
>pdb|1KZ4|A Chain A, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|B Chain B, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|C Chain C, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|D Chain D, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|E Chain E, Mutant Enzyme W63y Lumazine Synthase From S.pombe
Length = 159
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 84/141 (59%), Gaps = 2/141 (1%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETF-KKYSVKEENIDVVWVPGSFEIGVVAQQLG 130
K LR +V AR+N + L++GA+ET +K+ VK ENID+ VPGS+E+ +
Sbjct: 14 KGPELRILIVHARWNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSYELPQGIRASI 73
Query: 131 KSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR 190
Y AV+ IG +++G T H++ ++ + G++ G++SGVP I G+LT N +QAL R
Sbjct: 74 ARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALYR 133
Query: 191 AGGKSG-NKGAEAALTAIEMA 210
AG G N G + A+EM
Sbjct: 134 AGLNGGHNHGNDWGSAAVEMG 154
>pdb|1KYV|A Chain A, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|B Chain B, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|C Chain C, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|D Chain D, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|E Chain E, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYX|A Chain A, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|B Chain B, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|C Chain C, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|D Chain D, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|E Chain E, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYY|A Chain A, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|B Chain B, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|C Chain C, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|D Chain D, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|E Chain E, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
Length = 159
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 84/141 (59%), Gaps = 2/141 (1%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETF-KKYSVKEENIDVVWVPGSFEIGVVAQQLG 130
K LR +V AR+N + L++GA+ET +K+ VK ENID+ VPGS+E+ +
Sbjct: 14 KGPELRILIVHARWNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASI 73
Query: 131 KSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR 190
Y AV+ IG +++G T H++ ++ + G++ G++SGVP I G+LT N +QAL R
Sbjct: 74 ARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALYR 133
Query: 191 AGGKSG-NKGAEAALTAIEMA 210
AG G N G + A+EM
Sbjct: 134 AGLNGGHNHGNDWGSAAVEMG 154
>pdb|1KZ1|A Chain A, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|B Chain B, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|C Chain C, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|D Chain D, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|E Chain E, Mutant Enzyme W27g Lumazine Synthase From S.pombe
Length = 159
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 83/141 (58%), Gaps = 2/141 (1%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETF-KKYSVKEENIDVVWVPGSFEIGVVAQQLG 130
K LR +V AR N + L++GA+ET +K+ VK ENID+ VPGS+E+ +
Sbjct: 14 KGPELRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASI 73
Query: 131 KSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR 190
Y AV+ IG +++G T H++ ++ + G++ G++SGVP I G+LT N +QAL R
Sbjct: 74 ARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALYR 133
Query: 191 AGGKSG-NKGAEAALTAIEMA 210
AG G N G + A+EM
Sbjct: 134 AGLNGGHNHGNDWGSAAVEMG 154
>pdb|2JFB|A Chain A, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|B Chain B, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|C Chain C, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|D Chain D, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|E Chain E, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|F Chain F, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|G Chain G, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|H Chain H, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|I Chain I, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|J Chain J, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|K Chain K, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|L Chain L, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|M Chain M, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|N Chain N, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|O Chain O, 3d Structure Of Lumazine Synthase From Candida Albicans
Length = 164
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 10/162 (6%)
Query: 62 AVRHLTGFLTKNEG--LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS 119
AV+ L K +G LR ++ AR+N + L+ GA++ +++ VKEENI + VPGS
Sbjct: 2 AVKGLGEVDQKYDGSKLRIGILHARWNRKIIDALVAGAVKRLQEFGVKEENIIIETVPGS 61
Query: 120 FEIGV-----VAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPC 174
FE+ V +Q A++ IG +++G T H++ + +S ++ G+P
Sbjct: 62 FELPYGSKLFVEKQKRLGKPLDAIIPIGVLIKGSTMHFEYICDSTTHQLMKLNFELGIPV 121
Query: 175 IFGVLTCDNMDQALNRAG---GKSGNKGAEAALTAIEMASLF 213
IFGVLTC +QA RAG GK N G + A+EMA+ F
Sbjct: 122 IFGVLTCLTDEQAEARAGLIEGKMHNHGEDWGAAAVEMATKF 163
>pdb|4GEF|A Chain A, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|B Chain B, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|C Chain C, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|D Chain D, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|E Chain E, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|F Chain F, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|G Chain G, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|H Chain H, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|I Chain I, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|J Chain J, Product Complex Of Lumazine Synthase From Candida Glabrata
Length = 179
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 83/147 (56%), Gaps = 9/147 (6%)
Query: 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV----VAQQLGK 131
LR ++ AR+N ++ L++GA++ VKEENI V VPGSFE+ A++ K
Sbjct: 29 LRVGIIHARWNRVIIDALVKGAIDRMLSLGVKEENIIVETVPGSFELPYGSKRFAEKQAK 88
Query: 132 SGK-YTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR 190
G+ V+ IG +++G T H++ +++S +++ +P IFG+LTC +QAL R
Sbjct: 89 KGEPLDVVIPIGVLIKGSTMHFEYISDSTTQAIMNLQDKINIPVIFGLLTCLTEEQALAR 148
Query: 191 AGGKSG----NKGAEAALTAIEMASLF 213
AG G N G + A+EMA+ F
Sbjct: 149 AGIDEGKTMHNHGEDWGAAAVEMATKF 175
>pdb|1C41|A Chain A, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|B Chain B, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|C Chain C, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|D Chain D, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|E Chain E, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|F Chain F, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|G Chain G, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|H Chain H, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|I Chain I, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|J Chain J, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
Length = 200
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 38/172 (22%)
Query: 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL------ 129
LR +V AR+NE + + LL G VKE NI V VPGS+E+ + Q+L
Sbjct: 16 LRIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRLYSASQL 75
Query: 130 ------------------------------GKSGKYTAVLCIGAVVRGDTTHYDAVANSA 159
+G + A++ IG +++G+T H++ +A+S
Sbjct: 76 QTPSSGPSLSAGDLLGSSTTDLTALPTTTASSTGPFDALIAIGVLIKGETMHFEYIADSV 135
Query: 160 ASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGKSG--NKGAEAALTAIEM 209
+ G++ +++GVP IFGVLT DQA RAG G N G + L A+EM
Sbjct: 136 SHGLMRVQLDTGVPVIFGVLTVLTDDQAKARAGVIEGSHNHGEDWGLAAVEM 187
>pdb|1EJB|A Chain A, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|B Chain B, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|C Chain C, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|D Chain D, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|E Chain E, Lumazine Synthase From Saccharomyces Cerevisiae
Length = 168
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 9/147 (6%)
Query: 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-----VVAQQLG 130
+R ++ AR+N ++ L++GA+E V+E NI + VPGS+E+ V +Q
Sbjct: 17 IRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAK 76
Query: 131 KSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR 190
V+ IG +++G T H++ +++S +++ +P IFG+LTC +QAL R
Sbjct: 77 LGKPLDVVIPIGVLIKGSTMHFEYISDSTTHALMNLQEKVDMPVIFGLLTCMTEEQALAR 136
Query: 191 AGGKSG----NKGAEAALTAIEMASLF 213
AG N G + A+EMA F
Sbjct: 137 AGIDEAHSMHNHGEDWGAAAVEMAVKF 163
>pdb|1W19|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W29|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|2C92|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C94|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C97|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C9B|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|F Chain F, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|G Chain G, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|H Chain H, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|I Chain I, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|J Chain J, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9D|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|F Chain F, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|G Chain G, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|H Chain H, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|I Chain I, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|J Chain J, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2VI5|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|F Chain F, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|G Chain G, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|H Chain H, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|I Chain I, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|J Chain J, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
Length = 160
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGK 134
G+R A+V + ++ + LL+GA + + + VV V G+ EI VVAQ+L ++
Sbjct: 17 GVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPT--VVRVLGAIEIPVVAQELARN-- 72
Query: 135 YTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG 192
+ AV+ +G V+RG T H+D V ++ G+ ++S P GVLT + +QAL+RAG
Sbjct: 73 HDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAG 130
>pdb|2O6H|A Chain A, Lumazine Synthase Ribh1 From Brucella Melitensis (gene
Bmei1187, Swiss-prot Entry Q8ygh2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2O6H|B Chain B, Lumazine Synthase Ribh1 From Brucella Melitensis (gene
Bmei1187, Swiss-prot Entry Q8ygh2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2O6H|C Chain C, Lumazine Synthase Ribh1 From Brucella Melitensis (gene
Bmei1187, Swiss-prot Entry Q8ygh2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2O6H|D Chain D, Lumazine Synthase Ribh1 From Brucella Melitensis (gene
Bmei1187, Swiss-prot Entry Q8ygh2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2O6H|E Chain E, Lumazine Synthase Ribh1 From Brucella Melitensis (gene
Bmei1187, Swiss-prot Entry Q8ygh2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
Length = 157
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 8/138 (5%)
Query: 80 LVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV---AQQLGKSG--K 134
+V ARF + + LL+GA + DVV VPG+ EI A +G +
Sbjct: 17 IVEARFYDDLADALLDGAKAALDEAGA---TYDVVTVPGALEIPATISFALDGADNGGTE 73
Query: 135 YTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGK 194
Y + +G V+RG+T H+D V+N + + V + G+LT +N +QA RA +
Sbjct: 74 YDGFVALGTVIRGETYHFDIVSNESCRALTDLSVEESIAIGNGILTVENEEQAWVRARRE 133
Query: 195 SGNKGAEAALTAIEMASL 212
+KG AA A+ M L
Sbjct: 134 DKDKGGFAARAALTMIGL 151
>pdb|2F59|A Chain A, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2F59|B Chain B, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2F59|C Chain C, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2F59|D Chain D, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2F59|E Chain E, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2I0F|A Chain A, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1)
pdb|2I0F|B Chain B, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1)
pdb|2I0F|C Chain C, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1)
pdb|2I0F|D Chain D, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1)
pdb|2I0F|E Chain E, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1)
Length = 157
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 80 LVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV---AQQLGKSG--K 134
+V ARF + + LL+GA + DVV VPG+ EI A +G +
Sbjct: 17 IVEARFYDDLADALLDGAKAALDEAGA---TYDVVTVPGALEIPATISFALDGADNGGTE 73
Query: 135 YTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGK 194
Y + +G V+RG+T H+D V+N + + V + G+LT +N +QA A +
Sbjct: 74 YDGFVALGTVIRGETYHFDIVSNESCRALTDLSVEESIAIGNGILTVENEEQAWVHARRE 133
Query: 195 SGNKGAEAALTAIEMASL 212
+KG AA A+ M L
Sbjct: 134 DKDKGGFAARAALTMIGL 151
>pdb|2OBX|A Chain A, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|B Chain B, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|C Chain C, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|D Chain D, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|E Chain E, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|F Chain F, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|G Chain G, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|H Chain H, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|I Chain I, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|J Chain J, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
Length = 157
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSG 133
E +R A+V AR++ + + +DV VPG++EI + A+ L ++G
Sbjct: 10 ETVRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETG 69
Query: 134 KYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDN 183
+Y AVL VV G ++ VA++ G+++ +++GVP + VLT N
Sbjct: 70 RYGAVLGTAFVVNGGIYRHEFVASAVIDGMMNVQLSTGVPVLSAVLTPHN 119
>pdb|1T13|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1T13|B Chain B, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1T13|C Chain C, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1T13|D Chain D, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1T13|E Chain E, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1XN1|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|B Chain B, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|C Chain C, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|D Chain D, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|E Chain E, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|F Chain F, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|G Chain G, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|H Chain H, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|I Chain I, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|J Chain J, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
Length = 158
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 110 NIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVN 169
+++ VPG++EI + A+ L ++G+Y A++ V+ G +D VA + +G++ +
Sbjct: 45 EVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYRHDFVATAVINGMMQVQLE 104
Query: 170 SGVPCIFGVLTCDNMDQALNRAGGKSGN---KGAEAALTAIEMAS 211
+ VP + VLT + ++ + KG EAA A+++ S
Sbjct: 105 TEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVS 149
>pdb|1DI0|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|B Chain B, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|C Chain C, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|D Chain D, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|E Chain E, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
Length = 158
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 110 NIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVN 169
+++ VPG++EI + A+ L ++G+Y A++ V+ G +D VA + +G++ +
Sbjct: 45 EVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLE 104
Query: 170 SGVPCIFGVLTCDNMDQALNRAGGKSGN---KGAEAALTAIEMAS 211
+ VP + VLT + ++ + KG EAA A+++ S
Sbjct: 105 TEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVS 149
>pdb|1S5B|A Chain A, Cholera Holotoxin With An A-Subunit Y30s Mutation Form 3
pdb|1S5C|A Chain A, Cholera Holotoxin With An A-Subunit Y30s Mutation,
Crystal Form 1
pdb|1S5D|A Chain A, Cholera Holotoxin With An A-Subunit Y30s Mutation,
Crystal Form 2
Length = 240
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 24 GFSPKPTSMSFSRSSSLKGFGTQIAIERKERLSFVQTEAVRHLTGFLTKNEGLRFALVVA 83
G P+ S SF R GTQ+ I + QT VRH G+++ + LR A +V
Sbjct: 21 GLMPRGQSESFDR-------GTQMNINLYDHARGTQTGFVRHDDGYVSTSISLRSAHLVG 73
Query: 84 R 84
+
Sbjct: 74 Q 74
>pdb|3J20|V Chain V, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
pdb|3J21|6 Chain 6, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 99
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 17/80 (21%)
Query: 9 IHHSPLASSSRQFING-------FSPKPTSMSFSRSSSLKGFGTQI------AIERKERL 55
I+H + SR+ + G +P+ T + + RS FG+ I A + KER+
Sbjct: 23 IYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSY----FGSYISKGYAKAYDSKERM 78
Query: 56 SFVQTEAVRHLTGFLTKNEG 75
+++ E + G + K EG
Sbjct: 79 LYIEPEYILIRDGLIEKKEG 98
>pdb|2A3V|A Chain A, Structural Basis For Broad Dna-Specificity In Integron
Recombination
pdb|2A3V|B Chain B, Structural Basis For Broad Dna-Specificity In Integron
Recombination
pdb|2A3V|C Chain C, Structural Basis For Broad Dna-Specificity In Integron
Recombination
pdb|2A3V|D Chain D, Structural Basis For Broad Dna-Specificity In Integron
Recombination
Length = 320
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 31 SMSFSRSSSLKGFGTQIAIERKERLSFVQTEAVRHLTGFLTKNEGLRFALVVARFNELVT 90
S+SF LK T +++E + F +++ R L LT++E R +V ++L
Sbjct: 74 SLSFLYKEILK---TPLSLE----IRFQRSQLERKLPVVLTRDEIRRLLEIVDPKHQLPI 126
Query: 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGK 134
KLL L + ++ ++ID F+ G + GK GK
Sbjct: 127 KLLYGSGLRLMECMRLRVQDID-------FDYGAIRIWQGKGGK 163
>pdb|3LHA|A Chain A, Crystal Structure Of Mouse Vps26b(R240sG241AE242S) IN
SPACEGROUP P41 21 2
pdb|3LHA|B Chain B, Crystal Structure Of Mouse Vps26b(R240sG241AE242S) IN
SPACEGROUP P41 21 2
Length = 340
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 12 SPLASSS---RQFINGFSPKPTSMSFSRSSSLKGFGTQIAIERKERLSFVQTEAV 63
+P+ SS R F+ G+ PT ++ S++ + + I+ +ER F Q E V
Sbjct: 241 APVRGSSIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVV 295
>pdb|1GUX|B Chain B, Rb Pocket Bound To E7 Lxcxe Motif
pdb|1O9K|B Chain B, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|D Chain D, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|F Chain F, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|H Chain H, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
Length = 152
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLG 130
KN L+F ++V + +L ETFK+ +KEE D + V F V Q+L
Sbjct: 80 KNIDLKFKIIVTAYKDLP-----HAVQETFKRVLIKEEEYDSIIV---FYNSVFMQRLK 130
>pdb|4ELL|A Chain A, Structure Of The Inactive Retinoblastoma Protein Pocket
Domain
pdb|4ELL|B Chain B, Structure Of The Inactive Retinoblastoma Protein Pocket
Domain
Length = 411
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL 129
KN L+F ++V + +L ETFK+ +KEE D + V F V Q+L
Sbjct: 339 KNIDLKFKIIVTAYKDLP-----HAVQETFKRVLIKEEEYDSIIV---FYNSVFMQRL 388
>pdb|2R51|A Chain A, Crystal Structure Of Mouse Vps26b
Length = 340
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 19 RQFINGFSPKPTSMSFSRSSSLKGFGTQIAIERKERLSFVQTEAV 63
R F+ G+ PT ++ S++ + + I+ +ER F Q E V
Sbjct: 251 RLFLAGYELTPTXRDINKKFSVRYYLNLVLIDEEERRYFKQQEVV 295
>pdb|3LH8|A Chain A, Crystal Structure Of Mouse Vps26b In Spacegroup P41 21 2
pdb|3LH8|B Chain B, Crystal Structure Of Mouse Vps26b In Spacegroup P41 21 2
pdb|3LH9|A Chain A, Crystal Structure Of Mouse Vps26b(L197sR199E) IN
SPACEGROUP P41 21 2
pdb|3LH9|B Chain B, Crystal Structure Of Mouse Vps26b(L197sR199E) IN
SPACEGROUP P41 21 2
Length = 340
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 19 RQFINGFSPKPTSMSFSRSSSLKGFGTQIAIERKERLSFVQTEAV 63
R F+ G+ PT ++ S++ + + I+ +ER F Q E V
Sbjct: 251 RLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVV 295
>pdb|1N4M|A Chain A, Structure Of Rb Tumor Suppressor Bound To The
Transactivation Domain Of E2f-2
pdb|1N4M|B Chain B, Structure Of Rb Tumor Suppressor Bound To The
Transactivation Domain Of E2f-2
Length = 345
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL 129
KN L+F ++V + +L ETFK+ +KEE D + V F V Q+L
Sbjct: 275 KNIDLKFKIIVTAYKDLP-----HAVQETFKRVLIKEEEYDSIIV---FYNSVFMQRL 324
>pdb|2R7G|A Chain A, Structure Of The Retinoblastoma Protein Pocket Domain In
Complex With Adenovirus E1a Cr1 Domain
pdb|2R7G|C Chain C, Structure Of The Retinoblastoma Protein Pocket Domain In
Complex With Adenovirus E1a Cr1 Domain
Length = 347
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL 129
KN L+F ++V + +L ETFK+ +KEE D + V F V Q+L
Sbjct: 275 KNIDLKFKIIVTAYKDLP-----HAVQETFKRVLIKEEEYDSIIV---FYNSVFMQRL 324
>pdb|3POM|A Chain A, Crystal Structure Of The Unliganded Retinoblastoma Protein
Pocket Domain
pdb|3POM|B Chain B, Crystal Structure Of The Unliganded Retinoblastoma Protein
Pocket Domain
Length = 352
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 71 TKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL 129
KN L+F ++V + +L ETFK+ +KEE D + V F V Q+L
Sbjct: 279 VKNIDLKFKIIVTAYKDLP-----HAVQETFKRVLIKEEEYDSIIV---FYNSVFMQRL 329
>pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 333
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 71 TKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL 129
KN L+F ++V + +L ETFK+ +KEE D + V F V Q+L
Sbjct: 275 VKNIDLKFKIIVTAYKDLP-----HAVQETFKRVLIKEEEYDSIIV---FYNSVFMQRL 325
>pdb|4ELJ|A Chain A, Crystal Structure Of The Inactive Retinoblastoma Protein
Phosphorylated At T373
Length = 656
Score = 27.3 bits (59), Expect = 7.3, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV 116
KN L+F ++V + +L ETFK+ +KEE D + V
Sbjct: 584 KNIDLKFKIIVTAYKDLP-----HAVQETFKRVLIKEEEYDSIIV 623
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,023,310
Number of Sequences: 62578
Number of extensions: 219918
Number of successful extensions: 786
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 39
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)