Query 027801
Match_columns 218
No_of_seqs 159 out of 1090
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 15:24:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0054 RibH Riboflavin syntha 100.0 1.1E-58 2.4E-63 383.9 18.3 152 63-215 1-152 (152)
2 PLN02404 6,7-dimethyl-8-ribity 100.0 1.4E-58 3.1E-63 379.6 18.1 138 72-209 4-141 (141)
3 PRK00061 ribH 6,7-dimethyl-8-r 100.0 7.1E-58 1.5E-62 379.7 19.1 150 65-215 3-152 (154)
4 TIGR00114 lumazine-synth 6,7-d 100.0 6.1E-58 1.3E-62 374.3 17.9 138 76-213 1-138 (138)
5 PRK12419 riboflavin synthase s 100.0 1.2E-57 2.6E-62 380.1 19.1 145 69-215 4-153 (158)
6 PF00885 DMRL_synthase: 6,7-di 100.0 7.2E-56 1.6E-60 363.5 16.9 142 74-215 2-143 (144)
7 KOG3243 6,7-dimethyl-8-ribityl 100.0 4.6E-52 1E-56 339.0 14.5 156 59-214 1-157 (158)
8 TIGR01506 ribC_arch riboflavin 100.0 7.7E-47 1.7E-51 313.2 13.9 132 77-215 1-132 (151)
9 PRK06455 riboflavin synthase; 100.0 2.4E-33 5.1E-38 233.5 11.2 126 76-211 2-130 (155)
10 COG1731 Archaeal riboflavin sy 99.6 2.1E-15 4.5E-20 124.0 8.5 126 76-211 2-130 (154)
11 PF04392 ABC_sub_bind: ABC tra 95.7 0.13 2.7E-06 45.6 10.5 87 77-180 1-90 (294)
12 cd01541 PBP1_AraR Ligand-bindi 94.7 0.37 7.9E-06 40.6 9.8 62 78-143 2-64 (273)
13 PRK11041 DNA-binding transcrip 94.6 0.18 3.9E-06 43.3 7.9 69 72-143 32-100 (309)
14 cd06300 PBP1_ABC_sugar_binding 94.4 0.54 1.2E-05 39.5 10.1 64 77-143 1-69 (272)
15 cd06320 PBP1_allose_binding Pe 94.3 0.39 8.6E-06 40.4 9.3 62 77-142 1-65 (275)
16 cd06318 PBP1_ABC_sugar_binding 94.1 0.48 1E-05 40.0 9.3 61 77-143 1-64 (282)
17 cd06305 PBP1_methylthioribose_ 94.0 0.4 8.8E-06 40.1 8.7 60 77-142 1-63 (273)
18 cd06301 PBP1_rhizopine_binding 93.9 0.52 1.1E-05 39.5 9.1 82 77-176 1-86 (272)
19 cd06325 PBP1_ABC_uncharacteriz 93.9 0.36 7.9E-06 40.5 8.1 117 74-210 130-249 (281)
20 TIGR01481 ccpA catabolite cont 93.9 0.52 1.1E-05 41.1 9.3 67 73-143 57-124 (329)
21 cd06310 PBP1_ABC_sugar_binding 93.7 0.59 1.3E-05 39.2 9.0 63 77-143 1-66 (273)
22 cd06319 PBP1_ABC_sugar_binding 93.6 0.63 1.4E-05 39.0 9.1 61 77-143 1-64 (277)
23 cd01391 Periplasmic_Binding_Pr 93.6 0.75 1.6E-05 36.7 9.1 85 77-178 1-89 (269)
24 cd06284 PBP1_LacI_like_6 Ligan 93.5 0.45 9.8E-06 39.4 8.0 62 78-144 2-65 (267)
25 PF13377 Peripla_BP_3: Peripla 93.4 0.71 1.5E-05 35.8 8.6 100 75-187 9-109 (160)
26 cd01575 PBP1_GntR Ligand-bindi 93.2 0.95 2.1E-05 37.5 9.5 63 78-144 2-65 (268)
27 cd06317 PBP1_ABC_sugar_binding 93.1 0.86 1.9E-05 38.1 9.1 61 78-143 2-65 (275)
28 cd06273 PBP1_GntR_like_1 This 93.0 0.87 1.9E-05 38.0 9.0 62 78-143 2-64 (268)
29 cd06316 PBP1_ABC_sugar_binding 93.0 0.93 2E-05 38.9 9.4 62 77-142 1-64 (294)
30 cd01539 PBP1_GGBP Periplasmic 92.9 0.99 2.2E-05 39.4 9.6 61 77-143 1-66 (303)
31 cd06271 PBP1_AglR_RafR_like Li 92.9 0.44 9.6E-06 39.5 7.1 63 78-143 2-68 (268)
32 cd06291 PBP1_Qymf_like Ligand 92.8 1 2.2E-05 37.6 9.1 62 78-143 2-64 (265)
33 cd06277 PBP1_LacI_like_1 Ligan 92.7 0.99 2.1E-05 37.8 9.0 63 78-143 2-67 (268)
34 cd01538 PBP1_ABC_xylose_bindin 92.7 0.98 2.1E-05 38.9 9.2 63 77-143 1-64 (288)
35 cd06315 PBP1_ABC_sugar_binding 92.6 1.2 2.7E-05 38.1 9.6 61 77-143 2-65 (280)
36 cd06270 PBP1_GalS_like Ligand 92.6 0.52 1.1E-05 39.5 7.2 60 78-143 2-64 (268)
37 cd01542 PBP1_TreR_like Ligand- 92.5 0.98 2.1E-05 37.5 8.6 60 78-143 2-64 (259)
38 cd06271 PBP1_AglR_RafR_like Li 92.3 2.2 4.7E-05 35.4 10.5 101 75-187 120-222 (268)
39 cd06297 PBP1_LacI_like_12 Liga 92.3 0.74 1.6E-05 39.0 7.8 63 78-143 2-64 (269)
40 cd06293 PBP1_LacI_like_11 Liga 92.1 2 4.4E-05 36.0 10.2 102 74-187 115-218 (269)
41 cd01540 PBP1_arabinose_binding 92.1 0.99 2.1E-05 38.3 8.4 84 77-176 1-84 (289)
42 cd01536 PBP1_ABC_sugar_binding 92.1 0.72 1.6E-05 37.9 7.3 63 77-143 1-64 (267)
43 PRK10014 DNA-binding transcrip 92.0 1.9 4.2E-05 37.7 10.3 67 73-143 62-129 (342)
44 cd06292 PBP1_LacI_like_10 Liga 91.9 0.79 1.7E-05 38.4 7.5 63 78-144 2-65 (273)
45 cd06307 PBP1_uncharacterized_s 91.9 2 4.3E-05 36.2 9.9 64 77-143 1-67 (275)
46 cd06323 PBP1_ribose_binding Pe 91.9 1.4 3.1E-05 36.5 8.8 59 78-142 2-63 (268)
47 cd06270 PBP1_GalS_like Ligand 91.9 3 6.4E-05 34.9 10.9 123 74-210 115-243 (268)
48 PRK10355 xylF D-xylose transpo 91.7 2.3 5.1E-05 38.2 10.7 65 73-143 23-90 (330)
49 cd06283 PBP1_RegR_EndR_KdgR_li 91.7 1 2.2E-05 37.4 7.7 60 78-143 2-64 (267)
50 TIGR01016 sucCoAbeta succinyl- 91.6 4.6 0.0001 37.6 12.8 110 93-210 268-385 (386)
51 PRK15395 methyl-galactoside AB 91.6 2.9 6.2E-05 37.4 11.1 118 75-210 162-295 (330)
52 cd06302 PBP1_LsrB_Quorum_Sensi 91.5 2.1 4.6E-05 37.2 9.9 61 77-142 1-64 (298)
53 TIGR02634 xylF D-xylose ABC tr 91.5 1.2 2.7E-05 39.0 8.5 59 78-142 1-62 (302)
54 cd06322 PBP1_ABC_sugar_binding 91.5 2 4.2E-05 35.9 9.3 62 78-143 2-64 (267)
55 cd06312 PBP1_ABC_sugar_binding 91.0 1.6 3.5E-05 36.8 8.5 62 77-143 1-66 (271)
56 cd01537 PBP1_Repressors_Sugar_ 91.0 1.3 2.8E-05 35.9 7.6 64 77-144 1-65 (264)
57 cd06312 PBP1_ABC_sugar_binding 90.9 6.4 0.00014 33.2 12.0 120 75-211 125-255 (271)
58 cd06299 PBP1_LacI_like_13 Liga 90.9 6.3 0.00014 32.7 11.8 99 75-188 116-217 (265)
59 cd06281 PBP1_LacI_like_5 Ligan 90.7 1.2 2.5E-05 37.5 7.3 62 78-143 2-64 (269)
60 cd06293 PBP1_LacI_like_11 Liga 90.6 1 2.3E-05 37.7 6.9 63 77-143 1-64 (269)
61 PRK00696 sucC succinyl-CoA syn 90.4 7.2 0.00016 36.4 12.9 120 75-210 256-385 (388)
62 TIGR02637 RhaS rhamnose ABC tr 90.4 3.2 6.9E-05 35.9 10.0 101 76-189 124-229 (302)
63 cd06267 PBP1_LacI_sugar_bindin 90.2 4.8 0.0001 32.8 10.3 85 75-169 116-202 (264)
64 PRK10653 D-ribose transporter 90.1 3.5 7.6E-05 35.6 9.9 65 74-142 25-90 (295)
65 cd06309 PBP1_YtfQ_like Peripla 89.9 2.1 4.6E-05 36.1 8.2 62 78-143 2-64 (273)
66 cd06275 PBP1_PurR Ligand-bindi 89.9 3.1 6.7E-05 34.7 9.1 100 74-185 116-217 (269)
67 cd06294 PBP1_ycjW_transcriptio 89.8 2 4.2E-05 35.8 7.9 62 78-142 2-68 (270)
68 cd01545 PBP1_SalR Ligand-bindi 89.7 1.8 3.8E-05 36.1 7.5 63 78-143 2-65 (270)
69 cd06280 PBP1_LacI_like_4 Ligan 89.7 1.6 3.5E-05 36.6 7.3 62 78-143 2-64 (263)
70 cd06290 PBP1_LacI_like_9 Ligan 89.5 1.9 4.2E-05 35.9 7.7 60 78-143 2-64 (265)
71 PRK09492 treR trehalose repres 89.5 1.8 4E-05 37.4 7.7 67 73-143 60-127 (315)
72 cd06289 PBP1_MalI_like Ligand- 89.4 4.2 9.1E-05 33.7 9.5 102 74-187 116-219 (268)
73 PF00532 Peripla_BP_1: Peripla 89.3 3.7 8.1E-05 36.2 9.6 64 76-143 2-65 (279)
74 cd06286 PBP1_CcpB_like Ligand- 89.2 2.1 4.5E-05 35.6 7.6 62 78-143 2-64 (260)
75 cd06296 PBP1_CatR_like Ligand- 89.2 1.6 3.5E-05 36.4 6.9 62 78-143 2-64 (270)
76 PF02601 Exonuc_VII_L: Exonucl 89.1 5.6 0.00012 35.9 10.8 92 73-178 12-114 (319)
77 PRK10423 transcriptional repre 89.1 6.4 0.00014 34.2 10.8 124 74-211 173-306 (327)
78 PRK10014 DNA-binding transcrip 89.0 4.3 9.3E-05 35.6 9.7 125 74-210 181-322 (342)
79 PRK10423 transcriptional repre 88.9 1.9 4.2E-05 37.4 7.5 67 73-143 54-121 (327)
80 cd06287 PBP1_LacI_like_8 Ligan 88.8 5 0.00011 34.5 9.9 95 74-183 117-216 (269)
81 PF00532 Peripla_BP_1: Peripla 88.8 3.4 7.4E-05 36.4 9.1 117 74-211 117-260 (279)
82 cd06273 PBP1_GntR_like_1 This 88.7 4.4 9.5E-05 33.7 9.2 100 75-187 116-219 (268)
83 cd06354 PBP1_BmpA_PnrA_like Pe 88.4 2.5 5.3E-05 36.2 7.7 63 77-143 1-66 (265)
84 cd01574 PBP1_LacI Ligand-bindi 88.2 2.7 5.9E-05 34.9 7.7 62 78-143 2-65 (264)
85 cd06323 PBP1_ribose_binding Pe 88.1 10 0.00022 31.4 11.0 96 74-188 120-220 (268)
86 cd06298 PBP1_CcpA_like Ligand- 88.1 2.9 6.2E-05 34.7 7.7 61 77-143 1-64 (268)
87 PRK10727 DNA-binding transcrip 88.1 5.9 0.00013 34.9 10.1 100 74-187 175-278 (343)
88 cd06275 PBP1_PurR Ligand-bindi 88.0 2.8 6.1E-05 34.9 7.6 62 78-143 2-64 (269)
89 PRK15408 autoinducer 2-binding 87.9 7.6 0.00017 35.4 11.0 65 73-142 21-88 (336)
90 cd06290 PBP1_LacI_like_9 Ligan 87.8 6.8 0.00015 32.6 9.8 100 74-187 114-217 (265)
91 cd06274 PBP1_FruR Ligand bindi 87.6 2.8 6E-05 35.0 7.4 29 78-106 2-30 (264)
92 cd06285 PBP1_LacI_like_7 Ligan 87.5 6.3 0.00014 32.9 9.5 100 74-187 113-216 (265)
93 COG1609 PurR Transcriptional r 87.5 3.2 7E-05 37.8 8.3 66 74-142 57-122 (333)
94 PRK15395 methyl-galactoside AB 87.4 9.9 0.00021 34.0 11.2 66 73-143 22-90 (330)
95 cd06306 PBP1_TorT-like TorT-li 87.4 7.7 0.00017 32.9 10.1 122 74-210 124-254 (268)
96 cd06295 PBP1_CelR Ligand bindi 87.4 3.4 7.3E-05 34.8 7.8 63 76-143 4-73 (275)
97 cd06306 PBP1_TorT-like TorT-li 87.3 2.5 5.4E-05 35.9 7.0 62 77-142 1-65 (268)
98 PRK10401 DNA-binding transcrip 87.3 5.4 0.00012 35.2 9.4 123 74-210 175-307 (346)
99 PRK09701 D-allose transporter 87.2 3.7 8E-05 36.2 8.3 67 73-143 22-91 (311)
100 cd06311 PBP1_ABC_sugar_binding 87.2 6 0.00013 33.3 9.2 66 77-143 1-69 (274)
101 cd01538 PBP1_ABC_xylose_bindin 87.0 4 8.6E-05 35.1 8.2 122 74-210 124-261 (288)
102 cd06281 PBP1_LacI_like_5 Ligan 87.0 7.5 0.00016 32.6 9.7 100 74-186 115-216 (269)
103 TIGR02955 TMAO_TorT TMAO reduc 86.9 2.8 6.2E-05 36.3 7.3 62 77-142 1-65 (295)
104 PRK11303 DNA-binding transcrip 86.6 3.6 7.9E-05 35.8 7.8 67 74-144 60-127 (328)
105 PRK10703 DNA-binding transcrip 86.5 4.2 9.2E-05 35.7 8.2 66 74-143 58-124 (341)
106 TIGR02417 fruct_sucro_rep D-fr 86.5 3.6 7.7E-05 35.9 7.7 68 73-144 58-126 (327)
107 cd06272 PBP1_hexuronate_repres 86.4 4.5 9.7E-05 33.7 8.0 124 75-210 111-242 (261)
108 cd06278 PBP1_LacI_like_2 Ligan 86.4 3.1 6.8E-05 34.4 7.0 62 78-143 2-63 (266)
109 TIGR01481 ccpA catabolite cont 86.4 12 0.00025 32.6 10.9 123 74-211 175-307 (329)
110 PRK14987 gluconate operon tran 86.4 3.3 7.2E-05 36.2 7.5 65 74-143 62-128 (331)
111 cd06304 PBP1_BmpA_like Peripla 86.3 3.7 8.1E-05 34.7 7.6 62 77-142 1-64 (260)
112 cd06272 PBP1_hexuronate_repres 86.3 3.5 7.5E-05 34.4 7.2 59 78-143 2-60 (261)
113 cd06299 PBP1_LacI_like_13 Liga 86.2 3.4 7.3E-05 34.4 7.1 60 78-143 2-64 (265)
114 TIGR02405 trehalos_R_Ecol treh 86.1 4.3 9.2E-05 35.4 8.0 64 74-143 58-124 (311)
115 cd06282 PBP1_GntR_like_2 Ligan 86.0 4.1 9E-05 33.6 7.5 58 78-141 2-62 (266)
116 cd06267 PBP1_LacI_sugar_bindin 85.9 4.4 9.5E-05 33.0 7.5 62 77-144 1-65 (264)
117 cd06292 PBP1_LacI_like_10 Liga 85.7 12 0.00026 31.3 10.2 97 74-185 121-220 (273)
118 cd06308 PBP1_sensor_kinase_lik 85.5 4.2 9.2E-05 34.2 7.4 61 77-142 1-64 (270)
119 COG1609 PurR Transcriptional r 85.2 14 0.00031 33.6 11.2 125 73-211 173-308 (333)
120 cd06321 PBP1_ABC_sugar_binding 85.1 3.6 7.8E-05 34.5 6.8 63 77-142 1-65 (271)
121 cd06279 PBP1_LacI_like_3 Ligan 85.0 4.3 9.3E-05 34.6 7.3 59 78-143 2-65 (283)
122 COG2984 ABC-type uncharacteriz 85.0 13 0.00027 35.1 10.9 126 61-211 150-278 (322)
123 cd06319 PBP1_ABC_sugar_binding 84.9 8.2 0.00018 32.3 8.9 98 75-189 125-226 (277)
124 cd06285 PBP1_LacI_like_7 Ligan 84.8 4.5 9.8E-05 33.8 7.3 61 78-144 2-65 (265)
125 PRK14046 malate--CoA ligase su 84.8 32 0.0007 32.6 13.7 121 77-211 258-386 (392)
126 cd06289 PBP1_MalI_like Ligand- 84.7 4.7 0.0001 33.3 7.3 60 78-143 2-64 (268)
127 cd06313 PBP1_ABC_sugar_binding 84.6 7.2 0.00016 33.2 8.6 62 77-142 1-63 (272)
128 PF04392 ABC_sub_bind: ABC tra 84.6 14 0.00031 32.5 10.7 85 76-176 132-216 (294)
129 PRK10936 TMAO reductase system 84.5 5.7 0.00012 35.7 8.2 65 74-142 45-112 (343)
130 cd06294 PBP1_ycjW_transcriptio 84.1 13 0.00028 30.9 9.7 97 75-185 122-222 (270)
131 PRK10936 TMAO reductase system 84.1 13 0.00028 33.4 10.3 121 74-210 171-301 (343)
132 PRK10703 DNA-binding transcrip 84.0 9.7 0.00021 33.4 9.3 99 75-187 178-280 (341)
133 PRK10727 DNA-binding transcrip 83.8 6 0.00013 34.9 8.0 66 74-143 58-124 (343)
134 PRK09526 lacI lac repressor; R 83.8 12 0.00026 32.7 9.8 96 74-185 180-279 (342)
135 TIGR02637 RhaS rhamnose ABC tr 83.5 10 0.00022 32.7 9.2 61 78-142 1-64 (302)
136 cd06300 PBP1_ABC_sugar_binding 83.5 12 0.00026 31.4 9.3 88 74-178 124-216 (272)
137 cd06297 PBP1_LacI_like_12 Liga 83.4 13 0.00029 31.3 9.7 125 75-211 113-249 (269)
138 cd06307 PBP1_uncharacterized_s 83.1 23 0.00049 29.8 10.9 120 75-211 125-257 (275)
139 cd01575 PBP1_GntR Ligand-bindi 82.7 18 0.00039 29.9 10.0 101 74-186 115-217 (268)
140 PF13407 Peripla_BP_4: Peripla 82.4 14 0.00031 30.7 9.4 101 75-190 122-227 (257)
141 COG2039 Pcp Pyrrolidone-carbox 82.2 4.5 9.8E-05 35.8 6.4 40 153-192 139-179 (207)
142 cd00886 MogA_MoaB MogA_MoaB fa 82.2 8.4 0.00018 31.4 7.6 74 98-176 26-111 (152)
143 PRK10401 DNA-binding transcrip 81.7 7.5 0.00016 34.4 7.7 66 74-143 58-124 (346)
144 PF13407 Peripla_BP_4: Peripla 81.6 6.4 0.00014 32.8 6.9 62 78-143 1-64 (257)
145 TIGR02667 moaB_proteo molybden 81.3 6.9 0.00015 32.6 7.0 80 98-179 28-122 (163)
146 cd06291 PBP1_Qymf_like Ligand 81.0 30 0.00064 28.8 10.8 122 75-211 112-244 (265)
147 PRK14987 gluconate operon tran 80.6 14 0.0003 32.4 8.9 98 74-185 179-278 (331)
148 cd01544 PBP1_GalR Ligand-bindi 80.5 4.6 0.0001 34.1 5.8 55 77-142 1-60 (270)
149 cd06325 PBP1_ABC_uncharacteriz 80.5 7.3 0.00016 32.6 6.9 65 77-143 1-69 (281)
150 cd06286 PBP1_CcpB_like Ligand- 80.4 23 0.0005 29.3 9.9 124 74-210 113-243 (260)
151 PF03358 FMN_red: NADPH-depend 80.3 4.4 9.5E-05 31.9 5.3 98 76-179 1-114 (152)
152 cd06274 PBP1_FruR Ligand bindi 80.2 19 0.00042 30.0 9.4 100 75-186 116-218 (264)
153 cd01537 PBP1_Repressors_Sugar_ 80.2 13 0.00027 30.2 8.0 84 75-169 118-203 (264)
154 cd06288 PBP1_sucrose_transcrip 80.2 8.3 0.00018 32.0 7.1 62 78-143 2-65 (269)
155 TIGR02417 fruct_sucro_rep D-fr 80.1 16 0.00034 31.9 9.1 97 74-185 177-276 (327)
156 PRK11041 DNA-binding transcrip 79.8 17 0.00037 31.2 9.1 122 75-211 152-280 (309)
157 PRK09701 D-allose transporter 79.5 31 0.00067 30.3 10.9 99 75-189 156-257 (311)
158 cd06317 PBP1_ABC_sugar_binding 79.4 15 0.00032 30.6 8.4 87 76-175 126-218 (275)
159 cd06310 PBP1_ABC_sugar_binding 78.9 32 0.0007 28.7 10.3 97 75-187 123-222 (273)
160 cd01391 Periplasmic_Binding_Pr 78.9 21 0.00046 28.3 8.8 88 75-175 124-214 (269)
161 COG1908 FrhD Coenzyme F420-red 78.9 2.5 5.4E-05 35.0 3.5 57 109-169 28-93 (132)
162 PRK09492 treR trehalose repres 78.8 42 0.00091 28.9 11.4 119 74-211 174-300 (315)
163 cd06298 PBP1_CcpA_like Ligand- 78.8 36 0.00078 28.1 12.1 102 74-187 115-218 (268)
164 PF00117 GATase: Glutamine ami 78.1 12 0.00026 30.7 7.4 76 97-191 13-88 (192)
165 cd06311 PBP1_ABC_sugar_binding 77.8 36 0.00078 28.6 10.4 89 74-178 126-218 (274)
166 PF10087 DUF2325: Uncharacteri 77.6 9.3 0.0002 28.7 6.1 81 93-190 11-95 (97)
167 cd06302 PBP1_LsrB_Quorum_Sensi 77.5 35 0.00075 29.6 10.4 95 75-185 123-222 (298)
168 cd06313 PBP1_ABC_sugar_binding 77.4 44 0.00095 28.4 11.3 96 74-188 122-222 (272)
169 PF00465 Fe-ADH: Iron-containi 77.2 7.4 0.00016 35.7 6.5 62 77-143 23-87 (366)
170 cd06282 PBP1_GntR_like_2 Ligan 77.0 29 0.00063 28.6 9.4 99 75-187 116-217 (266)
171 cd08170 GlyDH Glycerol dehydro 76.8 12 0.00027 34.1 7.8 68 75-152 22-91 (351)
172 cd06277 PBP1_LacI_like_1 Ligan 76.7 35 0.00076 28.5 9.9 122 75-210 118-247 (268)
173 cd06288 PBP1_sucrose_transcrip 76.6 40 0.00086 27.9 10.2 103 74-188 115-219 (269)
174 cd08183 Fe-ADH2 Iron-containin 76.5 11 0.00024 35.0 7.4 66 75-152 22-89 (374)
175 cd06324 PBP1_ABC_sugar_binding 76.5 51 0.0011 28.7 13.3 121 76-211 143-275 (305)
176 cd01536 PBP1_ABC_sugar_binding 76.5 25 0.00054 28.7 8.8 86 74-174 120-211 (267)
177 PF01976 DUF116: Protein of un 76.2 24 0.00052 29.6 8.7 63 96-180 77-139 (158)
178 PRK09526 lacI lac repressor; R 76.1 14 0.00031 32.3 7.7 65 74-142 62-128 (342)
179 COG2984 ABC-type uncharacteriz 76.0 24 0.00052 33.3 9.5 89 72-180 27-118 (322)
180 PRK07114 keto-hydroxyglutarate 75.9 5 0.00011 35.5 4.8 93 96-190 31-131 (222)
181 PF02662 FlpD: Methyl-viologen 75.2 13 0.00028 29.8 6.6 63 105-172 24-91 (124)
182 PRK11303 DNA-binding transcrip 75.2 21 0.00047 31.0 8.5 95 75-185 179-277 (328)
183 COG1879 RbsB ABC-type sugar tr 74.4 42 0.0009 29.5 10.3 66 75-143 33-100 (322)
184 PRK11914 diacylglycerol kinase 73.9 35 0.00076 30.4 9.7 89 73-180 6-95 (306)
185 cd06303 PBP1_LuxPQ_Quorum_Sens 73.8 23 0.00049 30.2 8.2 30 77-106 1-31 (280)
186 cd06324 PBP1_ABC_sugar_binding 73.7 15 0.00032 32.0 7.1 29 78-106 2-31 (305)
187 cd01574 PBP1_LacI Ligand-bindi 73.7 29 0.00063 28.7 8.7 98 74-187 115-215 (264)
188 cd01545 PBP1_SalR Ligand-bindi 73.7 50 0.0011 27.3 10.7 126 74-211 117-250 (270)
189 COG4126 Hydantoin racemase [Am 73.6 6 0.00013 35.7 4.7 99 74-193 108-219 (230)
190 cd06279 PBP1_LacI_like_3 Ligan 73.6 26 0.00057 29.8 8.5 101 74-187 115-236 (283)
191 cd06308 PBP1_sensor_kinase_lik 73.4 53 0.0012 27.5 13.5 82 74-169 121-207 (270)
192 cd06295 PBP1_CelR Ligand bindi 72.9 33 0.00072 28.7 8.9 84 75-168 125-210 (275)
193 cd01543 PBP1_XylR Ligand-bindi 72.9 50 0.0011 27.6 10.0 99 74-185 108-210 (265)
194 cd06276 PBP1_FucR_like Ligand- 72.8 24 0.00052 29.9 8.1 59 78-143 2-61 (247)
195 cd06320 PBP1_allose_binding Pe 72.7 31 0.00068 28.9 8.7 96 75-188 122-222 (275)
196 PRK06015 keto-hydroxyglutarate 72.6 3.2 7E-05 36.3 2.7 89 96-190 20-116 (201)
197 cd06354 PBP1_BmpA_PnrA_like Pe 72.4 20 0.00042 30.7 7.5 94 74-187 120-218 (265)
198 cd06314 PBP1_tmGBP Periplasmic 72.3 25 0.00054 29.6 8.0 96 75-188 120-219 (271)
199 COG1707 ACT domain-containing 72.2 16 0.00034 32.2 6.8 89 75-176 83-173 (218)
200 cd06301 PBP1_rhizopine_binding 72.1 45 0.00097 27.8 9.5 119 75-210 123-255 (272)
201 cd06322 PBP1_ABC_sugar_binding 71.7 54 0.0012 27.2 9.9 114 76-210 122-250 (267)
202 PF02514 CobN-Mg_chel: CobN/Ma 71.1 31 0.00067 37.3 10.0 107 73-191 69-179 (1098)
203 TIGR01182 eda Entner-Doudoroff 70.7 5.6 0.00012 34.8 3.8 89 96-190 24-120 (204)
204 cd06316 PBP1_ABC_sugar_binding 70.6 36 0.00079 29.1 8.8 88 74-175 125-216 (294)
205 cd06284 PBP1_LacI_like_6 Ligan 70.5 59 0.0013 26.7 13.6 101 75-187 115-217 (267)
206 cd06283 PBP1_RegR_EndR_KdgR_li 70.4 59 0.0013 26.7 12.8 85 74-169 115-203 (267)
207 cd06314 PBP1_tmGBP Periplasmic 70.3 22 0.00047 30.0 7.2 28 78-106 2-29 (271)
208 PF09861 DUF2088: Domain of un 70.0 11 0.00024 32.8 5.5 46 74-121 53-101 (204)
209 cd00758 MoCF_BD MoCF_BD: molyb 69.6 12 0.00026 29.6 5.2 76 97-179 24-106 (133)
210 PRK10653 D-ribose transporter 69.4 47 0.001 28.6 9.3 93 76-187 149-245 (295)
211 cd06303 PBP1_LuxPQ_Quorum_Sens 69.3 63 0.0014 27.5 10.0 94 74-186 130-228 (280)
212 cd06305 PBP1_methylthioribose_ 69.2 40 0.00086 28.1 8.5 100 75-189 120-224 (273)
213 PRK03767 NAD(P)H:quinone oxido 68.8 23 0.00051 29.8 7.1 40 76-119 2-42 (200)
214 COG0655 WrbA Multimeric flavod 68.6 19 0.00041 30.5 6.5 40 77-119 2-42 (207)
215 cd08550 GlyDH-like Glycerol_de 68.4 26 0.00057 32.1 7.9 66 76-152 23-91 (349)
216 cd06318 PBP1_ABC_sugar_binding 68.3 70 0.0015 26.8 10.1 99 75-187 123-229 (282)
217 PRK04155 chaperone protein Hch 67.9 13 0.00029 34.0 5.7 40 76-118 50-100 (287)
218 PF00731 AIRC: AIR carboxylase 67.7 27 0.00059 29.3 7.1 120 76-216 1-134 (150)
219 cd06309 PBP1_YtfQ_like Peripla 67.1 75 0.0016 26.6 12.3 121 74-210 123-257 (273)
220 TIGR01755 flav_wrbA NAD(P)H:qu 66.3 30 0.00065 29.3 7.3 41 76-120 1-42 (197)
221 cd01544 PBP1_GalR Ligand-bindi 66.0 80 0.0017 26.5 11.8 123 73-210 110-245 (270)
222 cd08191 HHD 6-hydroxyhexanoate 65.8 11 0.00025 35.1 5.0 65 76-152 23-93 (386)
223 PF13458 Peripla_BP_6: Peripla 65.8 47 0.001 28.7 8.6 64 75-143 135-199 (343)
224 cd01424 MGS_CPS_II Methylglyox 65.7 21 0.00045 27.1 5.7 66 96-175 34-99 (110)
225 cd08187 BDH Butanol dehydrogen 65.5 12 0.00025 34.9 5.0 68 75-152 28-100 (382)
226 COG0715 TauA ABC-type nitrate/ 65.3 25 0.00054 31.0 6.8 58 70-139 131-189 (335)
227 cd06278 PBP1_LacI_like_2 Ligan 65.2 60 0.0013 26.7 8.8 98 75-187 115-216 (266)
228 cd07086 ALDH_F7_AASADH-like NA 64.6 65 0.0014 30.8 10.0 89 93-191 179-267 (478)
229 PRK15424 propionate catabolism 64.6 29 0.00062 34.6 7.8 92 74-193 13-105 (538)
230 TIGR02955 TMAO_TorT TMAO reduc 64.5 94 0.002 26.8 12.0 120 75-211 125-255 (295)
231 COG1454 EutG Alcohol dehydroge 64.1 12 0.00026 35.8 4.8 69 75-152 29-100 (377)
232 PRK03708 ppnK inorganic polyph 63.7 14 0.00029 33.6 4.9 62 76-143 1-66 (277)
233 cd01543 PBP1_XylR Ligand-bindi 63.7 24 0.00052 29.6 6.2 57 77-142 1-58 (265)
234 PRK06552 keto-hydroxyglutarate 63.6 7.5 0.00016 34.0 3.2 91 96-192 29-129 (213)
235 cd08171 GlyDH-like2 Glycerol d 63.6 21 0.00045 32.7 6.2 69 75-152 22-92 (345)
236 COG0800 Eda 2-keto-3-deoxy-6-p 63.5 13 0.00028 33.1 4.6 87 96-190 29-125 (211)
237 PRK15408 autoinducer 2-binding 63.4 73 0.0016 29.0 9.7 101 74-189 147-252 (336)
238 PRK10339 DNA-binding transcrip 63.4 88 0.0019 27.3 9.9 122 74-210 173-304 (327)
239 cd06296 PBP1_CatR_like Ligand- 63.2 58 0.0013 27.0 8.4 83 75-169 117-203 (270)
240 PF09084 NMT1: NMT1/THI5 like; 63.1 12 0.00027 30.5 4.2 58 71-140 89-146 (216)
241 TIGR02634 xylF D-xylose ABC tr 63.0 28 0.00061 30.4 6.7 87 76-173 120-213 (302)
242 PF01081 Aldolase: KDPG and KH 63.0 9.4 0.0002 33.2 3.6 89 96-190 24-120 (196)
243 cd01539 PBP1_GGBP Periplasmic 62.8 60 0.0013 28.2 8.7 80 77-168 141-225 (303)
244 cd06339 PBP1_YraM_LppC_lipopro 62.8 42 0.00091 30.0 7.9 65 75-143 124-209 (336)
245 COG0129 IlvD Dihydroxyacid deh 62.4 34 0.00074 34.7 7.8 88 75-178 42-152 (575)
246 cd06341 PBP1_ABC_ligand_bindin 62.3 41 0.0009 29.4 7.7 92 75-180 132-223 (341)
247 cd06356 PBP1_Amide_Urea_BP_lik 62.1 85 0.0018 27.8 9.7 64 75-143 132-196 (334)
248 cd01542 PBP1_TreR_like Ligand- 61.7 78 0.0017 26.0 8.8 97 74-184 113-211 (259)
249 cd06343 PBP1_ABC_ligand_bindin 61.6 57 0.0012 28.9 8.5 64 75-143 144-208 (362)
250 TIGR00237 xseA exodeoxyribonuc 61.0 76 0.0017 30.5 9.7 92 73-178 127-226 (432)
251 cd00887 MoeA MoeA family. Memb 60.5 22 0.00048 33.5 5.9 95 74-179 167-281 (394)
252 cd08190 HOT Hydroxyacid-oxoaci 60.5 14 0.00031 34.9 4.7 61 76-142 24-88 (414)
253 cd08173 Gro1PDH Sn-glycerol-1- 60.1 46 0.001 30.3 7.8 66 76-152 26-92 (339)
254 cd01741 GATase1_1 Subgroup of 59.6 32 0.00069 28.2 6.1 85 77-178 1-87 (188)
255 PRK00286 xseA exodeoxyribonucl 59.5 83 0.0018 29.8 9.6 90 74-178 134-231 (438)
256 COG1597 LCB5 Sphingosine kinas 58.8 50 0.0011 30.1 7.7 89 77-184 4-94 (301)
257 TIGR02717 AcCoA-syn-alpha acet 58.3 70 0.0015 30.7 9.0 81 123-209 359-443 (447)
258 PRK00002 aroB 3-dehydroquinate 58.2 53 0.0012 30.3 7.9 67 76-152 32-106 (358)
259 cd08551 Fe-ADH iron-containing 58.1 11 0.00024 34.6 3.5 63 76-143 24-89 (370)
260 PRK09423 gldA glycerol dehydro 58.1 57 0.0012 30.1 8.1 67 76-152 30-98 (366)
261 PRK09417 mogA molybdenum cofac 57.6 39 0.00084 29.2 6.5 82 75-159 3-88 (193)
262 cd01541 PBP1_AraR Ligand-bindi 57.5 1.1E+02 0.0024 25.5 10.7 101 75-188 121-225 (273)
263 PRK13054 lipid kinase; Reviewe 57.4 1.4E+02 0.0031 26.6 10.5 73 94-181 20-92 (300)
264 cd06360 PBP1_alkylbenzenes_lik 57.2 54 0.0012 28.4 7.4 64 75-143 134-198 (336)
265 PRK15454 ethanol dehydrogenase 56.9 25 0.00054 33.2 5.6 68 76-152 50-120 (395)
266 PRK10624 L-1,2-propanediol oxi 56.7 16 0.00034 34.1 4.2 68 76-152 31-101 (382)
267 cd08195 DHQS Dehydroquinate sy 56.6 69 0.0015 29.3 8.3 67 76-152 25-99 (345)
268 cd04509 PBP1_ABC_transporter_G 56.6 1.1E+02 0.0024 25.1 9.2 80 85-178 15-98 (299)
269 cd07111 ALDH_F16 Aldehyde dehy 56.5 1.3E+02 0.0028 29.0 10.6 84 98-191 194-277 (480)
270 cd08174 G1PDH-like Glycerol-1- 56.3 46 0.001 30.2 7.1 79 75-178 25-106 (331)
271 PRK05234 mgsA methylglyoxal sy 56.1 99 0.0021 25.4 8.4 82 98-190 42-125 (142)
272 TIGR00683 nanA N-acetylneurami 56.1 34 0.00073 30.8 6.1 61 126-191 27-89 (290)
273 cd03132 GATase1_catalase Type 55.6 48 0.001 25.8 6.2 90 75-175 1-99 (142)
274 PRK01175 phosphoribosylformylg 55.0 79 0.0017 28.5 8.3 98 75-192 3-106 (261)
275 cd04509 PBP1_ABC_transporter_G 54.9 1E+02 0.0023 25.2 8.4 89 75-177 136-225 (299)
276 COG0683 LivK ABC-type branched 54.8 66 0.0014 29.3 7.9 64 76-143 149-212 (366)
277 PF08821 CGGC: CGGC domain; I 54.5 68 0.0015 25.3 6.9 90 77-177 1-105 (107)
278 cd06355 PBP1_FmdD_like Peripla 54.0 69 0.0015 28.6 7.7 64 75-143 133-197 (348)
279 cd06360 PBP1_alkylbenzenes_lik 53.9 93 0.002 26.9 8.3 62 77-139 1-70 (336)
280 cd08185 Fe-ADH1 Iron-containin 53.7 29 0.00063 32.2 5.5 69 76-152 26-97 (380)
281 PRK13197 pyrrolidone-carboxyla 53.7 30 0.00064 30.3 5.2 38 106-143 32-70 (215)
282 PF03846 SulA: Cell division i 53.5 37 0.00079 27.8 5.3 44 97-140 73-116 (119)
283 cd06333 PBP1_ABC-type_HAAT_lik 53.5 58 0.0013 28.1 7.0 87 74-176 132-219 (312)
284 TIGR02990 ectoine_eutA ectoine 53.4 68 0.0015 28.5 7.5 86 74-176 119-211 (239)
285 cd08194 Fe-ADH6 Iron-containin 53.4 17 0.00037 33.7 3.8 68 76-152 24-94 (375)
286 PRK13527 glutamine amidotransf 53.3 1.1E+02 0.0023 25.8 8.4 64 97-178 19-83 (200)
287 PRK14690 molybdopterin biosynt 53.2 48 0.001 31.9 7.0 98 74-179 192-305 (419)
288 cd06350 PBP1_GPCR_family_C_lik 53.0 97 0.0021 27.0 8.4 66 74-144 159-227 (348)
289 TIGR03427 ABC_peri_uca ABC tra 53.0 26 0.00055 32.4 4.9 62 68-141 99-160 (328)
290 PRK13337 putative lipid kinase 52.8 95 0.0021 27.7 8.5 88 77-181 3-91 (304)
291 PF02142 MGS: MGS-like domain 52.6 39 0.00084 25.2 5.1 72 95-175 20-94 (95)
292 cd08189 Fe-ADH5 Iron-containin 52.5 18 0.00038 33.6 3.8 62 76-142 27-91 (374)
293 cd00952 CHBPH_aldolase Trans-o 52.5 46 0.001 30.3 6.5 60 127-191 36-96 (309)
294 PRK10595 SOS cell division inh 52.3 40 0.00086 28.8 5.6 58 74-140 55-112 (164)
295 TIGR01357 aroB 3-dehydroquinat 52.0 81 0.0018 28.8 8.0 67 76-152 21-95 (344)
296 cd06280 PBP1_LacI_like_4 Ligan 51.5 1.2E+02 0.0027 25.1 8.5 97 75-187 115-213 (263)
297 PRK09860 putative alcohol dehy 51.0 19 0.00041 33.7 3.8 62 76-142 32-96 (383)
298 cd07766 DHQ_Fe-ADH Dehydroquin 50.6 58 0.0012 29.3 6.7 87 76-180 24-113 (332)
299 cd08182 HEPD Hydroxyethylphosp 50.5 28 0.00061 32.1 4.8 65 76-152 24-91 (367)
300 COG1041 Predicted DNA modifica 50.3 19 0.00041 34.3 3.6 46 87-140 225-270 (347)
301 PRK05718 keto-hydroxyglutarate 50.2 16 0.00034 32.1 2.9 88 96-192 31-128 (212)
302 COG1880 CdhB CO dehydrogenase/ 50.2 1.2E+02 0.0026 26.4 8.1 74 78-167 39-133 (170)
303 KOG3857 Alcohol dehydrogenase, 50.1 22 0.00049 34.5 4.1 58 92-153 85-142 (465)
304 cd03147 GATase1_Ydr533c_like T 50.0 51 0.0011 29.0 6.1 39 133-175 93-131 (231)
305 TIGR02638 lactal_redase lactal 49.8 22 0.00047 33.1 4.0 61 76-143 30-95 (379)
306 PRK13195 pyrrolidone-carboxyla 49.6 31 0.00067 30.7 4.7 34 110-143 36-70 (222)
307 TIGR01162 purE phosphoribosyla 49.6 61 0.0013 27.6 6.2 117 78-215 1-131 (156)
308 cd08197 DOIS 2-deoxy-scyllo-in 49.5 1.1E+02 0.0023 28.7 8.4 66 76-152 24-98 (355)
309 PF02776 TPP_enzyme_N: Thiamin 49.3 51 0.0011 26.8 5.7 39 95-138 5-43 (172)
310 TIGR00147 lipid kinase, YegS/R 49.3 1.2E+02 0.0025 26.7 8.4 75 77-165 3-79 (293)
311 cd08176 LPO Lactadehyde:propan 49.1 19 0.0004 33.5 3.4 68 76-152 29-99 (377)
312 PF00994 MoCF_biosynth: Probab 49.1 51 0.0011 26.1 5.5 77 97-180 22-110 (144)
313 cd06268 PBP1_ABC_transporter_L 48.9 1.5E+02 0.0032 24.3 9.4 85 75-175 135-220 (298)
314 PF00781 DAGK_cat: Diacylglyce 48.9 98 0.0021 23.9 7.0 73 94-181 17-90 (130)
315 PRK12321 cobN cobaltochelatase 48.8 1.2E+02 0.0027 33.0 9.8 99 75-191 198-301 (1100)
316 cd08178 AAD_C C-terminal alcoh 48.6 33 0.00072 32.1 5.0 67 76-152 22-92 (398)
317 cd00951 KDGDH 5-dehydro-4-deox 48.5 54 0.0012 29.4 6.2 60 126-191 27-87 (289)
318 cd03129 GAT1_Peptidase_E_like 48.5 1.7E+02 0.0036 24.7 10.9 90 73-175 27-118 (210)
319 KOG4426 Arginyl-tRNA synthetas 48.4 25 0.00055 35.2 4.3 85 96-183 340-444 (656)
320 cd08179 NADPH_BDH NADPH-depend 48.1 27 0.0006 32.3 4.3 61 76-142 24-89 (375)
321 cd08188 Fe-ADH4 Iron-containin 47.6 29 0.00062 32.3 4.4 68 76-152 29-99 (377)
322 PLN02466 aldehyde dehydrogenas 47.3 2.2E+02 0.0047 28.1 10.6 85 98-191 242-327 (538)
323 cd06304 PBP1_BmpA_like Peripla 47.0 1.7E+02 0.0038 24.5 9.2 92 74-187 119-214 (260)
324 COG0329 DapA Dihydrodipicolina 46.8 72 0.0016 29.1 6.8 60 125-191 30-92 (299)
325 cd06361 PBP1_GPC6A_like Ligand 46.7 1.4E+02 0.003 27.9 8.7 81 56-143 156-243 (403)
326 PRK04885 ppnK inorganic polyph 46.7 54 0.0012 29.6 5.9 80 76-191 1-90 (265)
327 TIGR03674 fen_arch flap struct 46.4 35 0.00077 31.7 4.8 45 89-140 127-171 (338)
328 PLN02834 3-dehydroquinate synt 46.2 1.2E+02 0.0026 29.3 8.4 68 75-152 100-177 (433)
329 TIGR01729 taurine_ABC_bnd taur 45.9 56 0.0012 28.5 5.8 58 72-141 97-154 (300)
330 TIGR03669 urea_ABC_arch urea A 45.7 1E+02 0.0022 28.4 7.7 63 76-143 134-197 (374)
331 COG2185 Sbm Methylmalonyl-CoA 45.7 1.8E+02 0.004 24.4 9.7 128 73-215 10-139 (143)
332 cd08175 G1PDH Glycerol-1-phosp 45.7 49 0.0011 30.2 5.6 65 76-152 24-94 (348)
333 COG0521 MoaB Molybdopterin bio 45.7 63 0.0014 27.8 5.8 73 75-152 7-83 (169)
334 COG0303 MoeA Molybdopterin bio 45.5 38 0.00082 32.6 4.9 76 98-180 209-290 (404)
335 PRK13196 pyrrolidone-carboxyla 45.3 46 0.001 29.1 5.1 36 153-189 142-180 (211)
336 cd06339 PBP1_YraM_LppC_lipopro 45.3 2.1E+02 0.0045 25.5 9.4 84 77-176 1-88 (336)
337 PLN00124 succinyl-CoA ligase [ 45.1 1.3E+02 0.0029 29.1 8.6 107 95-211 305-421 (422)
338 cd06332 PBP1_aromatic_compound 44.6 2E+02 0.0044 24.6 9.1 63 77-139 1-70 (333)
339 cd06326 PBP1_STKc_like Type I 44.6 97 0.0021 26.8 7.0 64 75-143 136-200 (336)
340 TIGR03407 urea_ABC_UrtA urea A 44.6 1E+02 0.0023 27.6 7.4 62 76-142 135-197 (359)
341 PRK11480 tauA taurine transpor 44.2 54 0.0012 29.3 5.5 60 70-141 117-176 (320)
342 cd07110 ALDH_F10_BADH Arabidop 44.1 2.8E+02 0.0062 26.2 11.2 85 98-191 167-251 (456)
343 cd01422 MGS Methylglyoxal synt 44.0 1.5E+02 0.0034 23.1 9.0 69 97-176 36-106 (115)
344 PRK07855 lipid-transfer protei 43.8 54 0.0012 30.8 5.6 16 129-144 94-109 (386)
345 PRK09140 2-dehydro-3-deoxy-6-p 43.6 40 0.00087 29.2 4.4 88 96-188 26-121 (206)
346 cd08199 EEVS 2-epi-5-epi-valio 43.6 1.5E+02 0.0034 27.5 8.6 62 75-143 26-97 (354)
347 cd06348 PBP1_ABC_ligand_bindin 43.6 88 0.0019 27.5 6.7 65 75-143 136-201 (344)
348 PRK06756 flavodoxin; Provision 43.5 1.6E+02 0.0035 23.2 9.4 85 76-176 2-88 (148)
349 cd08193 HVD 5-hydroxyvalerate 43.5 34 0.00074 31.7 4.2 68 76-152 27-97 (376)
350 cd00885 cinA Competence-damage 43.3 69 0.0015 26.8 5.7 60 97-163 24-84 (170)
351 PRK03620 5-dehydro-4-deoxygluc 43.2 89 0.0019 28.2 6.8 60 126-191 34-94 (303)
352 cd06362 PBP1_mGluR Ligand bind 43.1 81 0.0018 29.2 6.6 81 75-163 172-255 (452)
353 cd06334 PBP1_ABC_ligand_bindin 43.0 66 0.0014 29.1 5.9 66 74-144 139-205 (351)
354 cd07039 TPP_PYR_POX Pyrimidine 42.7 1.3E+02 0.0029 24.6 7.3 26 96-125 5-30 (164)
355 PRK13143 hisH imidazole glycer 42.7 2.1E+02 0.0045 24.1 9.6 75 76-175 1-75 (200)
356 cd06363 PBP1_Taste_receptor Li 42.7 79 0.0017 29.1 6.5 65 74-143 175-243 (410)
357 cd06375 PBP1_mGluR_groupII Lig 42.4 87 0.0019 29.7 6.9 83 56-143 158-241 (458)
358 cd06338 PBP1_ABC_ligand_bindin 42.1 94 0.002 27.1 6.6 64 75-143 141-205 (345)
359 cd07037 TPP_PYR_MenD Pyrimidin 41.9 59 0.0013 27.0 5.1 27 97-127 3-29 (162)
360 PRK08142 acetyl-CoA acetyltran 41.8 67 0.0014 30.3 5.9 29 88-116 24-52 (388)
361 PRK11249 katE hydroperoxidase 41.4 82 0.0018 33.0 6.9 107 73-193 595-709 (752)
362 cd06353 PBP1_BmpA_Med_like Per 41.4 1.1E+02 0.0024 26.7 6.9 11 96-106 48-58 (258)
363 cd06342 PBP1_ABC_LIVBP_like Ty 41.3 1.3E+02 0.0029 25.8 7.4 63 75-142 135-198 (334)
364 cd06341 PBP1_ABC_ligand_bindin 41.2 1.1E+02 0.0024 26.8 6.9 7 134-140 67-73 (341)
365 PRK10569 NAD(P)H-dependent FMN 41.0 53 0.0011 27.9 4.7 42 76-117 1-43 (191)
366 PRK05665 amidotransferase; Pro 40.9 1.2E+02 0.0026 26.8 7.1 102 76-192 3-108 (240)
367 cd06327 PBP1_SBP_like_1 Peripl 40.9 1.1E+02 0.0024 26.7 6.9 65 75-143 135-199 (334)
368 PLN02958 diacylglycerol kinase 40.8 1.6E+02 0.0034 28.8 8.4 96 73-181 109-207 (481)
369 cd07130 ALDH_F7_AASADH NAD+-de 40.8 3E+02 0.0065 26.4 10.3 85 97-191 182-266 (474)
370 PRK13146 hisH imidazole glycer 40.7 1.8E+02 0.0039 24.8 8.0 78 76-175 2-81 (209)
371 PF13712 Glyco_tranf_2_5: Glyc 40.6 55 0.0012 28.3 4.8 58 78-139 1-59 (217)
372 cd07097 ALDH_KGSADH-YcbD Bacil 40.4 2.2E+02 0.0048 27.1 9.3 85 98-191 182-266 (473)
373 cd08192 Fe-ADH7 Iron-containin 40.4 35 0.00076 31.5 3.8 68 76-152 25-95 (370)
374 PRK06065 acetyl-CoA acetyltran 40.1 68 0.0015 30.3 5.7 16 129-144 104-119 (392)
375 PRK02645 ppnK inorganic polyph 39.7 69 0.0015 29.3 5.5 97 76-191 4-112 (305)
376 cd07098 ALDH_F15-22 Aldehyde d 39.6 3E+02 0.0064 26.2 9.9 86 96-191 169-254 (465)
377 cd07139 ALDH_AldA-Rv0768 Mycob 39.5 2.3E+02 0.005 26.9 9.2 84 98-191 184-267 (471)
378 cd06437 CESA_CaSu_A2 Cellulose 39.5 75 0.0016 26.2 5.3 7 186-192 172-178 (232)
379 cd06346 PBP1_ABC_ligand_bindin 39.5 1.3E+02 0.0028 26.2 7.1 64 75-143 137-201 (312)
380 PLN02948 phosphoribosylaminoim 39.5 1.4E+02 0.0031 29.8 8.1 123 72-215 407-543 (577)
381 cd01743 GATase1_Anthranilate_S 39.4 1.3E+02 0.0027 24.8 6.6 47 85-144 6-52 (184)
382 cd03802 GT1_AviGT4_like This f 39.3 1.6E+02 0.0034 25.0 7.4 17 126-142 79-95 (335)
383 TIGR01382 PfpI intracellular p 39.3 1.1E+02 0.0023 24.3 6.0 87 77-175 1-96 (166)
384 TIGR02299 HpaE 5-carboxymethyl 39.1 3.6E+02 0.0077 25.9 10.7 85 98-191 182-266 (488)
385 cd06321 PBP1_ABC_sugar_binding 39.0 2.3E+02 0.0049 23.6 12.2 96 75-189 121-221 (271)
386 cd06371 PBP1_sensory_GC_DEF_li 39.0 1.9E+02 0.004 26.5 8.3 86 75-164 132-219 (382)
387 PRK03170 dihydrodipicolinate s 38.9 81 0.0018 28.0 5.8 61 126-191 28-89 (292)
388 PRK05928 hemD uroporphyrinogen 38.9 1.3E+02 0.0029 24.9 6.7 60 74-141 124-184 (249)
389 PRK04147 N-acetylneuraminate l 38.7 82 0.0018 28.2 5.8 61 126-191 30-92 (293)
390 cd08177 MAR Maleylacetate redu 38.6 47 0.001 30.3 4.3 65 76-152 24-91 (337)
391 cd06336 PBP1_ABC_ligand_bindin 38.6 1E+02 0.0022 27.4 6.4 65 74-143 137-202 (347)
392 TIGR00623 sula cell division i 38.6 68 0.0015 27.6 5.0 59 74-141 59-117 (168)
393 PRK14021 bifunctional shikimat 38.6 1.6E+02 0.0035 29.1 8.2 61 76-143 210-278 (542)
394 cd06345 PBP1_ABC_ligand_bindin 38.6 1.6E+02 0.0034 25.9 7.5 65 74-143 143-208 (344)
395 PRK13194 pyrrolidone-carboxyla 38.6 71 0.0015 27.9 5.2 37 153-190 139-177 (208)
396 COG1058 CinA Predicted nucleot 38.5 95 0.0021 28.3 6.1 93 97-210 26-119 (255)
397 PRK03670 competence damage-ind 38.3 66 0.0014 28.9 5.1 62 96-163 24-86 (252)
398 PF13649 Methyltransf_25: Meth 38.3 33 0.00071 25.1 2.7 46 89-144 32-77 (101)
399 cd07093 ALDH_F8_HMSADH Human a 38.2 3.5E+02 0.0075 25.5 11.1 84 97-190 163-247 (455)
400 PRK07765 para-aminobenzoate sy 38.2 2.2E+02 0.0049 24.4 8.2 80 77-178 2-82 (214)
401 cd06328 PBP1_SBP_like_2 Peripl 38.1 2.2E+02 0.0047 25.2 8.3 81 87-180 13-101 (333)
402 cd06331 PBP1_AmiC_like Type I 37.7 1.6E+02 0.0034 25.8 7.3 64 75-143 132-196 (333)
403 cd08186 Fe-ADH8 Iron-containin 37.6 51 0.0011 30.7 4.4 67 76-152 27-98 (383)
404 TIGR03567 FMN_reduc_SsuE FMN r 37.6 42 0.00092 27.5 3.5 20 111-130 68-88 (171)
405 PRK13411 molecular chaperone D 37.6 16 0.00034 36.8 1.1 58 91-148 308-375 (653)
406 cd06328 PBP1_SBP_like_2 Peripl 37.5 1.3E+02 0.0028 26.6 6.8 63 75-141 136-198 (333)
407 PLN02204 diacylglycerol kinase 37.3 1.8E+02 0.0038 29.9 8.3 80 73-164 157-239 (601)
408 TIGR03845 sulfopyru_alph sulfo 37.2 42 0.0009 27.8 3.4 70 96-178 3-91 (157)
409 PLN02278 succinic semialdehyde 37.2 2.8E+02 0.006 26.9 9.5 93 98-199 207-300 (498)
410 PRK09065 glutamine amidotransf 37.2 1.2E+02 0.0026 26.5 6.4 99 77-192 3-105 (237)
411 PRK13193 pyrrolidone-carboxyla 37.1 84 0.0018 27.5 5.4 37 153-190 139-175 (209)
412 PF06506 PrpR_N: Propionate ca 37.0 54 0.0012 27.1 4.1 88 73-190 75-162 (176)
413 TIGR00322 diphth2_R diphthamid 36.8 1.1E+02 0.0025 28.5 6.5 86 75-188 232-317 (332)
414 PF01470 Peptidase_C15: Pyrogl 36.6 45 0.00098 28.7 3.7 37 153-190 139-177 (202)
415 PRK01215 competence damage-ind 36.5 1.6E+02 0.0035 26.5 7.3 61 97-164 28-89 (264)
416 PLN02470 acetolactate synthase 36.4 57 0.0012 32.1 4.7 39 83-125 5-43 (585)
417 cd07090 ALDH_F9_TMBADH NAD+-de 36.2 1.5E+02 0.0032 28.1 7.4 84 98-191 163-246 (457)
418 cd07138 ALDH_CddD_SSP0762 Rhod 36.2 2.9E+02 0.0064 26.2 9.4 85 98-191 177-261 (466)
419 cd08181 PPD-like 1,3-propanedi 36.2 53 0.0011 30.3 4.3 69 76-152 26-97 (357)
420 cd06340 PBP1_ABC_ligand_bindin 36.1 1.8E+02 0.0038 25.8 7.5 64 75-143 144-208 (347)
421 cd00954 NAL N-Acetylneuraminic 36.0 1.3E+02 0.0028 26.9 6.5 69 118-191 16-89 (288)
422 COG0167 PyrD Dihydroorotate de 36.0 3.6E+02 0.0078 25.2 9.7 98 86-191 145-260 (310)
423 COG2518 Pcm Protein-L-isoaspar 35.9 47 0.001 29.5 3.7 47 89-144 102-148 (209)
424 COG0594 RnpA RNase P protein c 35.7 1.1E+02 0.0025 24.3 5.5 52 73-125 38-95 (117)
425 PF13685 Fe-ADH_2: Iron-contai 35.5 63 0.0014 29.0 4.5 67 76-152 20-89 (250)
426 PLN02417 dihydrodipicolinate s 35.4 1.1E+02 0.0024 27.3 6.1 59 126-191 28-89 (280)
427 PRK03980 flap endonuclease-1; 35.3 78 0.0017 29.0 5.2 45 89-140 80-124 (292)
428 TIGR03249 KdgD 5-dehydro-4-deo 35.2 1.4E+02 0.003 26.8 6.7 55 132-191 37-92 (296)
429 PTZ00217 flap endonuclease-1; 35.1 68 0.0015 30.7 4.9 43 89-138 135-177 (393)
430 PRK05595 replicative DNA helic 35.0 1.6E+02 0.0035 28.1 7.4 68 110-178 285-358 (444)
431 PRK09189 uroporphyrinogen-III 34.9 1E+02 0.0022 26.4 5.5 60 74-141 117-177 (240)
432 PTZ00400 DnaK-type molecular c 34.8 57 0.0012 33.0 4.5 58 91-148 348-414 (663)
433 TIGR02329 propionate_PrpR prop 34.8 2.1E+02 0.0045 28.5 8.3 81 92-193 14-95 (526)
434 TIGR03702 lip_kinase_YegS lipi 34.7 1.4E+02 0.0031 26.5 6.6 73 93-180 15-87 (293)
435 cd07035 TPP_PYR_POX_like Pyrim 34.7 94 0.002 24.5 5.0 27 97-127 3-29 (155)
436 TIGR01991 HscA Fe-S protein as 34.6 20 0.00042 35.7 1.2 43 88-130 290-333 (599)
437 cd07038 TPP_PYR_PDC_IPDC_like 34.3 99 0.0021 25.3 5.2 26 97-126 3-28 (162)
438 cd01540 PBP1_arabinose_binding 34.1 2.8E+02 0.0061 23.2 10.5 121 76-211 130-269 (289)
439 cd06335 PBP1_ABC_ligand_bindin 34.0 2.3E+02 0.0051 25.1 7.9 64 75-143 138-202 (347)
440 cd03799 GT1_amsK_like This is 33.8 1.6E+02 0.0034 25.0 6.6 39 77-119 1-39 (355)
441 PRK15404 leucine ABC transport 33.8 1.6E+02 0.0035 26.8 7.0 63 75-142 161-224 (369)
442 PRK05752 uroporphyrinogen-III 33.8 1.4E+02 0.003 25.9 6.3 60 74-141 129-189 (255)
443 cd01746 GATase1_CTP_Synthase T 33.8 3.3E+02 0.0072 24.0 9.2 58 110-178 33-90 (235)
444 TIGR02405 trehalos_R_Ecol treh 33.7 3.2E+02 0.0069 23.7 9.0 120 73-211 170-297 (311)
445 cd06326 PBP1_STKc_like Type I 33.6 3.1E+02 0.0068 23.6 9.3 66 76-141 1-75 (336)
446 PRK12448 dihydroxy-acid dehydr 33.2 1.4E+02 0.0031 30.7 6.9 90 73-178 31-143 (615)
447 cd06427 CESA_like_2 CESA_like_ 33.1 1.1E+02 0.0023 25.6 5.3 10 78-87 3-12 (241)
448 cd06359 PBP1_Nba_like Type I p 33.0 3.4E+02 0.0073 23.8 8.8 48 92-139 18-70 (333)
449 PRK13410 molecular chaperone D 32.9 28 0.0006 35.3 2.0 61 87-147 301-374 (668)
450 PRK00290 dnaK molecular chaper 32.6 31 0.00067 34.3 2.2 59 89-147 305-372 (627)
451 cd03146 GAT1_Peptidase_E Type 32.2 1.9E+02 0.0041 24.6 6.8 66 73-153 29-95 (212)
452 PRK05989 cobN cobaltochelatase 32.2 2.9E+02 0.0063 30.7 9.5 100 76-190 202-305 (1244)
453 COG0463 WcaA Glycosyltransfera 32.1 1.9E+02 0.0041 20.7 6.0 54 75-131 2-55 (291)
454 TIGR02313 HpaI-NOT-DapA 2,4-di 32.0 1.6E+02 0.0035 26.5 6.6 55 132-191 32-88 (294)
455 PTZ00186 heat shock 70 kDa pre 31.7 27 0.00059 35.4 1.7 59 89-147 332-399 (657)
456 TIGR02069 cyanophycinase cyano 31.4 3.8E+02 0.0081 23.8 8.9 90 73-174 26-119 (250)
457 cd06366 PBP1_GABAb_receptor Li 31.3 3.6E+02 0.0079 23.6 9.5 74 92-178 19-97 (350)
458 PRK07449 2-succinyl-5-enolpyru 31.3 1.1E+02 0.0024 29.7 5.8 30 95-128 13-42 (568)
459 PRK15398 aldehyde dehydrogenas 31.1 4.4E+02 0.0095 25.5 9.7 98 89-200 171-270 (465)
460 cd08184 Fe-ADH3 Iron-containin 31.1 1E+02 0.0022 28.8 5.2 64 76-152 26-95 (347)
461 PRK13944 protein-L-isoaspartat 31.0 60 0.0013 27.4 3.5 49 88-144 104-152 (205)
462 KOG0805 Carbon-nitrogen hydrol 31.0 70 0.0015 29.9 4.0 61 74-152 66-127 (337)
463 TIGR01815 TrpE-clade3 anthrani 30.5 2.3E+02 0.005 29.4 8.1 81 73-178 514-594 (717)
464 cd06374 PBP1_mGluR_groupI Liga 30.4 2.4E+02 0.0052 26.6 7.7 65 75-142 186-251 (472)
465 PRK02155 ppnK NAD(+)/NADH kina 30.4 1.5E+02 0.0032 27.0 6.1 94 77-191 7-116 (291)
466 cd00532 MGS-like MGS-like doma 30.3 60 0.0013 24.9 3.1 71 96-176 33-104 (112)
467 TIGR02257 cobalto_cobN cobalto 30.2 4.7E+02 0.01 28.8 10.6 103 75-191 191-297 (1122)
468 cd07101 ALDH_SSADH2_GabD2 Myco 30.0 4.6E+02 0.01 24.8 9.6 83 98-191 165-247 (454)
469 cd06379 PBP1_iGluR_NMDA_NR1 N- 29.8 2.3E+02 0.0049 25.5 7.2 67 74-143 153-222 (377)
470 cd06333 PBP1_ABC-type_HAAT_lik 29.7 3.6E+02 0.0079 23.1 8.6 43 97-139 26-71 (312)
471 TIGR00732 dprA DNA protecting 29.7 3.7E+02 0.0079 23.5 8.2 73 67-145 36-108 (220)
472 PRK01231 ppnK inorganic polyph 29.6 1.7E+02 0.0036 26.8 6.3 95 77-191 6-115 (295)
473 PRK08199 thiamine pyrophosphat 29.5 1.1E+02 0.0025 29.7 5.5 40 95-139 12-51 (557)
474 cd07141 ALDH_F1AB_F2_RALDH1 NA 29.3 5.2E+02 0.011 24.8 10.9 85 98-191 192-277 (481)
475 PRK06466 acetolactate synthase 29.2 2.3E+02 0.005 27.7 7.6 58 95-167 8-65 (574)
476 TIGR02350 prok_dnaK chaperone 29.2 29 0.00063 34.1 1.4 61 87-147 297-370 (595)
477 cd06332 PBP1_aromatic_compound 29.1 3.6E+02 0.0078 23.1 8.0 62 75-143 134-195 (333)
478 PF01866 Diphthamide_syn: Puta 29.1 1.4E+02 0.003 27.2 5.7 87 74-188 208-294 (307)
479 cd07152 ALDH_BenzADH NAD-depen 29.1 1.5E+02 0.0032 28.0 6.0 83 99-191 159-241 (443)
480 PRK09107 acetolactate synthase 29.0 2.4E+02 0.0052 27.9 7.7 41 94-139 14-54 (595)
481 COG0821 gcpE 1-hydroxy-2-methy 29.0 2E+02 0.0044 27.7 6.8 59 95-153 243-311 (361)
482 smart00851 MGS MGS-like domain 29.0 76 0.0017 23.2 3.3 69 96-175 21-89 (90)
483 cd00501 Peptidase_C15 Pyroglut 28.8 1.1E+02 0.0025 25.7 4.8 34 110-143 35-69 (194)
484 cd06343 PBP1_ABC_ligand_bindin 28.7 3.7E+02 0.0081 23.7 8.3 92 73-178 4-105 (362)
485 PRK06158 thiolase; Provisional 28.7 40 0.00087 31.5 2.2 31 88-118 27-57 (384)
486 PF13458 Peripla_BP_6: Peripla 28.7 3.2E+02 0.007 23.5 7.7 88 76-176 2-98 (343)
487 cd06376 PBP1_mGluR_groupIII Li 28.6 1.7E+02 0.0036 27.5 6.3 66 74-143 171-240 (463)
488 cd06349 PBP1_ABC_ligand_bindin 28.4 2.8E+02 0.0061 24.2 7.4 64 75-143 135-199 (340)
489 PRK05183 hscA chaperone protei 28.4 35 0.00077 34.1 1.9 58 89-146 307-373 (616)
490 COG3473 Maleate cis-trans isom 28.2 2.8E+02 0.006 25.3 7.2 84 76-176 119-209 (238)
491 PRK08309 short chain dehydroge 28.2 3.5E+02 0.0076 22.5 7.6 81 78-163 76-162 (177)
492 PRK13942 protein-L-isoaspartat 28.1 73 0.0016 27.1 3.5 46 90-144 110-155 (212)
493 KOG1017 Predicted uracil phosp 28.0 1.3E+02 0.0028 27.4 5.1 59 77-138 175-246 (267)
494 cd08549 G1PDH_related Glycerol 28.0 3E+02 0.0066 25.1 7.7 65 76-152 25-94 (332)
495 TIGR02690 resist_ArsH arsenica 27.9 1.5E+02 0.0032 26.2 5.5 96 74-177 25-134 (219)
496 PF13379 NMT1_2: NMT1-like fam 27.9 1.3E+02 0.0029 25.6 5.1 55 74-140 120-176 (252)
497 TIGR02025 BchH magnesium chela 27.5 4.2E+02 0.0092 29.4 9.7 108 74-191 238-352 (1216)
498 PTZ00009 heat shock 70 kDa pro 27.3 58 0.0012 32.8 3.1 57 91-147 313-379 (653)
499 cd07102 ALDH_EDX86601 Uncharac 27.3 3E+02 0.0065 25.9 7.8 84 98-191 163-246 (452)
500 cd06342 PBP1_ABC_LIVBP_like Ty 27.3 4E+02 0.0087 22.9 9.0 69 96-178 25-97 (334)
No 1
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-58 Score=383.94 Aligned_cols=152 Identities=52% Similarity=0.860 Sum_probs=147.1
Q ss_pred HhhhcccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEe
Q 027801 63 VRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 63 ~~~~~~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG 142 (218)
|+.+++.+. +++.|||||++|||++|+|+|+++|+++|+++|...+||+++||||+||||+++++|+++++||||||||
T Consensus 1 m~~~~g~~~-~~~~riaIV~arfn~~I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG 79 (152)
T COG0054 1 MNIIEGNLV-AKGLRIAIVVARFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALG 79 (152)
T ss_pred CCccCCCcC-CCCceEEEEEeehhHHHHHHHHHHHHHHHHHcCCCcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEe
Confidence 566777775 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHhh
Q 027801 143 AVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 143 ~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~k~gnKG~EAA~aAleM~~L~~~ 215 (218)
|||||+|+||||||+++++|||++||++++||+|||||++|+|||++|+|.+.+|||.|||.+||||++++++
T Consensus 80 ~VIrG~T~Hfd~Va~~~~~gl~~vsl~~~~PV~~GVLt~~~~eqA~~rag~~~gnkG~~Aa~aAlem~~l~~~ 152 (152)
T COG0054 80 AVIRGETYHFDYVANEVARGLMDVSLETGVPVTFGVLTTDNIEQAIERAGTKAGNKGAEAAEAALEMANLLKK 152 (152)
T ss_pred eEEeCCCccHHHHHHHHHHHHHHHHHhhCCCeEeeecCCCcHHHHHHHhCccccccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=100.00 E-value=1.4e-58 Score=379.57 Aligned_cols=138 Identities=86% Similarity=1.315 Sum_probs=135.9
Q ss_pred CCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 72 ~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
+++++||+||+||||++|+++|+++|+++|+++|+++++++++|||||||||+++++|+++++|||||||||||||+|+|
T Consensus 4 ~~~~~ri~IV~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT~H 83 (141)
T PLN02404 4 DGEGLRFGVVVARFNEIITKNLLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDTTH 83 (141)
T ss_pred CCCCCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCCch
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEM 209 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~k~gnKG~EAA~aAleM 209 (218)
|||||+++++|||+++|++++||+|||||++|+|||++|++++.+|||.|||++||||
T Consensus 84 ~e~V~~~v~~gl~~vsl~~~~PV~~GVLt~~~~eQA~~Rag~~~~nkG~eaA~aalem 141 (141)
T PLN02404 84 YDAVANSAASGVLSAGLNSGVPCIFGVLTCDDMEQALNRAGGKAGNKGAEAALTAVEM 141 (141)
T ss_pred hHHHHHHHHHHHHHHHhccCCCEEEEEcCCCCHHHHHHHhCCcccCcHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999998
No 3
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=100.00 E-value=7.1e-58 Score=379.68 Aligned_cols=150 Identities=55% Similarity=0.899 Sum_probs=144.5
Q ss_pred hhcccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 65 HLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 65 ~~~~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
.+++++. .++.||+||+||||++|++.|+++|+++|+++|+++++++++||||+||||+++++|+++++||||||||||
T Consensus 3 ~~~~~~~-~~~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavIalG~V 81 (154)
T PRK00061 3 IIEGNLV-AKGLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAESGKYDAVIALGAV 81 (154)
T ss_pred ccCCCcC-CCCCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHHcCCCCEEEEEeeE
Confidence 3456664 788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHhh
Q 027801 145 VRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 145 IrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~k~gnKG~EAA~aAleM~~L~~~ 215 (218)
|||+|+||||||+++++|||++||++++||+|||||++|+|||++|+|++.+|||.|||++|++|++++++
T Consensus 82 IrG~T~H~e~V~~~v~~gl~~v~l~~~~PV~~GVLt~~~~eQa~~R~~~~~~nkG~eaa~aal~m~~l~~~ 152 (154)
T PRK00061 82 IRGETPHFDYVANEVAKGLADVSLETGVPVGFGVLTTDTIEQAIERAGTKAGNKGAEAALAALEMANLLKQ 152 (154)
T ss_pred EcCCCchHHHHHHHHHHHHHHHHhccCCCEEEEecCCCCHHHHHHHhCccccccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999886
No 4
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=100.00 E-value=6.1e-58 Score=374.34 Aligned_cols=138 Identities=46% Similarity=0.870 Sum_probs=135.7
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAV 155 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~V 155 (218)
+||+||+||||++|+++|+++|+++|+++|+.+++|+++||||+||||+++++|+++++|||||||||||||+|+|||||
T Consensus 1 ~ri~IV~s~~n~~i~~~L~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavI~LG~VIrG~T~H~e~v 80 (138)
T TIGR00114 1 VRVGIVIARFNRDITDMLLKGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLAETGKYDAVIALGCVIRGGTPHFEYV 80 (138)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEeeEEeCCCchhHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCCCCCCcHHHHHHHHHHHHHHH
Q 027801 156 ANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLF 213 (218)
Q Consensus 156 a~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~k~gnKG~EAA~aAleM~~L~ 213 (218)
|+++++|||++||++++||+|||||++|+|||++|++++.+|||.|||++|+||++++
T Consensus 81 ~~~v~~gl~~~sl~~~~PV~~GvLt~~~~eQa~~R~~~~~~nkG~eaA~aal~m~~~~ 138 (138)
T TIGR00114 81 ADEAAKGIADLALDYDKPVIFGILTTGTIEQAIERAGDKAGNKGVEAAVAALEMAKLL 138 (138)
T ss_pred HHHHHHHHHHHHhhhCCCEEEEecCCCCHHHHHHHccccccccHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999875
No 5
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=100.00 E-value=1.2e-57 Score=380.15 Aligned_cols=145 Identities=27% Similarity=0.333 Sum_probs=136.9
Q ss_pred cCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCC
Q 027801 69 FLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 69 ~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGe 148 (218)
+.++.++.||+||+||||++|+++|++||+++|+++|+++++++++|||||||||+++++|+++++|||||||||||||+
T Consensus 4 ~~~~~~~~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGe 83 (158)
T PRK12419 4 SPRFATPQRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGG 83 (158)
T ss_pred CCCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCC
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHH-----HHHHhhCCCCCCcHHHHHHHHHHHHHHHhh
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMD-----QALNRAGGKSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~e-----QA~~Rag~k~gnKG~EAA~aAleM~~L~~~ 215 (218)
|+||||||+++++|||+++|++++||+|||||++|+| ||++|++. +|||.|||.+||||++|+++
T Consensus 84 T~H~e~V~~~v~~gl~~vsl~~~~PV~fGVLT~~~~eqA~~rqa~~Ra~~--~nKG~eaA~aalem~~l~~~ 153 (158)
T PRK12419 84 IYRHEFVAQAVIDGLMRVQLDTEVPVFSVVLTPHHFHESEEHHDFFRAHF--VVKGAEAAHACADTLLSRER 153 (158)
T ss_pred CchhHHHHHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHHhhcCc--cccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 55556754 49999999999999999886
No 6
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=100.00 E-value=7.2e-56 Score=363.52 Aligned_cols=142 Identities=54% Similarity=0.893 Sum_probs=137.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
+++|||||+||||++|+++|+++|+++|+++|+++++++++||||+||||+++++|+++++|||||||||||||+|+|||
T Consensus 2 ~~~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~ 81 (144)
T PF00885_consen 2 SGLRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHFE 81 (144)
T ss_dssp TTEEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHHH
T ss_pred CCCEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHhh
Q 027801 154 AVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~k~gnKG~EAA~aAleM~~L~~~ 215 (218)
|||+++++|||++|+++++||+|||||++|+|||++|++++.+|||+|||++|++|++++++
T Consensus 82 ~v~~~v~~gl~~lsl~~~~PV~~gvlt~~~~eqa~~R~~~~~~nkG~eaA~aal~m~~l~~~ 143 (144)
T PF00885_consen 82 YVANAVSRGLMDLSLEYGIPVIFGVLTPDTEEQALERAGGKAGNKGREAAEAALEMAKLLRQ 143 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTSEEEEEEEEESSHHHHHHHCEETTEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCccEEEEecCCCCHHHHHHHhcchhhhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 7
>KOG3243 consensus 6,7-dimethyl-8-ribityllumazine synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.6e-52 Score=338.96 Aligned_cols=156 Identities=63% Similarity=1.043 Sum_probs=150.8
Q ss_pred hhhhHhhhcccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEE
Q 027801 59 QTEAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAV 138 (218)
Q Consensus 59 ~~~a~~~~~~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaV 138 (218)
|++++++.++++.+++++||+||.+|||+.+++.|++||++++++++|.++||++.||||+||||+.+|.+.+++.||+|
T Consensus 1 ~~~gv~~p~~s~~~G~~lR~~IvhARwN~vvi~~LvkGAiEtm~~~~V~eenI~ie~VPGS~Elp~g~~~~~~r~~~daV 80 (158)
T KOG3243|consen 1 QTAGVRHPTGSLIRGEGLRFAIVHARWNEVVIKLLVKGAIETMKKYSVREENIEIEWVPGSFELPVGAQNLGKRGKFDAV 80 (158)
T ss_pred CccccCCCChhhccCCCeEEEEEeehhHHHHHHHHHHHHHHHHHHhCcchhceeEEEcCCceeccHHHHhhhhccCceEE
Confidence 45677888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCCCCC-CcHHHHHHHHHHHHHHHh
Q 027801 139 LCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGKSG-NKGAEAALTAIEMASLFE 214 (218)
Q Consensus 139 IaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~k~g-nKG~EAA~aAleM~~L~~ 214 (218)
||+|++|||+|.|||||+++++.|||+++++.++|||||+|||+|+|||+.|+|++.+ |+|.||+.+|+||+.++.
T Consensus 81 i~IGvlIkGsTmHfeyis~s~~hglm~~~~~sgvPvIfGlLTc~~eeQAL~RaG~~~ghNhG~dwg~aAvEMa~kf~ 157 (158)
T KOG3243|consen 81 ICIGVLIKGSTMHFEYISNSAAHGLMSASINSGVPVIFGLLTCEDEEQALNRAGGKAGHNHGADWGLAAVEMASKFE 157 (158)
T ss_pred EEEEEEEecCchhHHHHHHHHHHHHhhhcccCCCCEEEEEeeeccHHHHHHhhccccccccchhHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999988 999999999999999875
No 8
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=100.00 E-value=7.7e-47 Score=313.24 Aligned_cols=132 Identities=16% Similarity=0.156 Sum_probs=125.9
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHH
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVA 156 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va 156 (218)
||+|+.+.|-+. .|+++|+++|+++| ...+|+++||||+||||+++++|+++++|||||||||||||+|+|||||
T Consensus 1 ~~~~~~ttf~~~---~M~~gA~~~L~~~g-~g~~i~v~~VPGa~EiP~aak~l~~~~~~DaVIaLG~VIrGeT~Hfd~V- 75 (151)
T TIGR01506 1 KVGIADTTFARY---DMGGAAIDELRKHT-AGIKIIRRTVPGIKDLPVAAKKLLEEEGCEMVITLGWVGPEEKDKLSYH- 75 (151)
T ss_pred Ccceecchhhhh---hHHHHHHHHHHhcC-CCCeEEEEECCcHhHHHHHHHHHHhcCCCCEEEEeceEEcCCCCcEeHH-
Confidence 589999999998 99999999999965 3346999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHhh
Q 027801 157 NSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 157 ~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~k~gnKG~EAA~aAleM~~L~~~ 215 (218)
++++|||++++++++||+| |||++|+|||++|++.+.+|||+|||.+||+|+.++++
T Consensus 76 -~vs~GL~~lsl~~~~PVi~-VlT~e~eeQA~~Rag~~~~nkG~eaA~aaleMi~l~~~ 132 (151)
T TIGR01506 76 -EASTGLIQVQLMTNKHVID-VTVHEDEAEDPEELKVLADNRAREHAQNLIMLLFKPDR 132 (151)
T ss_pred -HHHHHHHHHHhhhCCCEEE-EEeeCCHHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999999999765
No 9
>PRK06455 riboflavin synthase; Provisional
Probab=100.00 E-value=2.4e-33 Score=233.53 Aligned_cols=126 Identities=17% Similarity=0.226 Sum_probs=108.5
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAV 155 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~V 155 (218)
.||+||+|+||+. .|+++|+++|+++| ...+|++++|||+||||+++++|+++++|||||||||| |+|+|||||
T Consensus 2 ~kigIV~s~fn~~---~L~~gAi~~L~~~g-~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~V--G~t~h~d~V 75 (155)
T PRK06455 2 MKIGIADTTFARV---DMGSAAIDELRKLD-PSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMP--GPTEKDKYC 75 (155)
T ss_pred cEEEEEEEecchH---HHHHHHHHHHHhcC-CCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEecce--eccCcchhH
Confidence 5999999999997 79999999999988 44689999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHhchhcCCceEEEEcCCC---CHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Q 027801 156 ANSAASGVLSAGVNSGVPCIFGVLTCD---NMDQALNRAGGKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 156 a~~vs~gLm~lsL~~~vPVifGVLT~~---n~eQA~~Rag~k~gnKG~EAA~aAleM~~ 211 (218)
|+++++|||++|+++++||+|.-+--+ ++++-..- ..||.+|-|..++.|+.
T Consensus 76 a~~vS~GL~~lsL~t~~PVi~v~vhede~~~~~~l~~~----~~~r~~~h~~n~~~~~~ 130 (155)
T PRK06455 76 AHEASIGLIMAQLMTNKHIIEVFVHEDEAKDEKELKEL----AEDRAREHAENLVKLLF 130 (155)
T ss_pred HHHHHHHHHHHHhhhCCCEEEEEecccccCCHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999877632 22221111 23566888888888764
No 10
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=99.61 E-value=2.1e-15 Score=123.97 Aligned_cols=126 Identities=18% Similarity=0.169 Sum_probs=106.3
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAV 155 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~V 155 (218)
.+|+|+.+.|.+. .|-.-|+++|+++-.. -.|..++|||..+||+++++|++..+||+||+||+| |.|.-+.|.
T Consensus 2 ~kvGiaDTTFaRv---dMg~vai~~lk~~~~~-~~i~R~TVPGIKdlpvaakrLieeeGCd~Vi~lG~~--G~t~~Dk~~ 75 (154)
T COG1731 2 TKVGIADTTFARV---DMGSVAIDELKKLLPG-IKIKRYTVPGIKDLPVAAKRLIEEEGCDIVIALGWV--GPTEKDKYS 75 (154)
T ss_pred ceeeeeccceeee---cchHHHHHHHHhhCCC-CceEEeeCCCcccChHHHHHHHHhcCCcEEEEccCc--CcchhhHHH
Confidence 4899999999998 8899999999998543 479999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHhchhcCCceEEEEcCCC---CHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Q 027801 156 ANSAASGVLSAGVNSGVPCIFGVLTCD---NMDQALNRAGGKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 156 a~~vs~gLm~lsL~~~vPVifGVLT~~---n~eQA~~Rag~k~gnKG~EAA~aAleM~~ 211 (218)
+.+.+.||+.+|+.+|+.||..-+--+ ++++-.+- ..||.+|-|...++|+.
T Consensus 76 ~~~aS~GLi~~QlmTn~hiidV~VHEDEa~dekeL~~l----a~~RareHa~Nlv~ll~ 130 (154)
T COG1731 76 YLAASIGLIMAQLMTNKHIIDVTVHEDEAEDEKELKEL----AVDRAREHAENLVKLLF 130 (154)
T ss_pred HHHHhhHHHHHHHHcCCeEEEEEeeccccCCHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 999999999999999999998766532 22221111 13556888888888864
No 11
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=95.70 E-value=0.13 Score=45.61 Aligned_cols=87 Identities=17% Similarity=0.348 Sum_probs=52.6
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe--CCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV--PGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V--PGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
||||++.--|+.+. ...+|.++.|++.|+.++++++..- -|-.+ ++-.++++ ...++|-||++|.- =
T Consensus 1 ~v~i~~~~~~~~~~-~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l-~~~~~DlIi~~gt~------a-- 70 (294)
T PF04392_consen 1 KVGILQFISHPALD-DIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKL-KAQKPDLIIAIGTP------A-- 70 (294)
T ss_dssp EEEEEESS--HHHH-HHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHH-CCTS-SEEEEESHH------H--
T ss_pred CeEEEEEeccHHHH-HHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHH-hcCCCCEEEEeCcH------H--
Confidence 79999999888755 5589999999999998766665433 34333 44444444 46789999999753 1
Q ss_pred HHHHHHHHHHHHhchhcCCceEEEEcC
Q 027801 154 AVANSAASGVLSAGVNSGVPCIFGVLT 180 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVifGVLT 180 (218)
++.+.+- +..++||+|.-++
T Consensus 71 ------a~~~~~~-~~~~iPVVf~~V~ 90 (294)
T PF04392_consen 71 ------AQALAKH-LKDDIPVVFCGVS 90 (294)
T ss_dssp ------HHHHHHH--SS-S-EEEECES
T ss_pred ------HHHHHHh-cCCCcEEEEEecc
Confidence 2222222 2223999998885
No 12
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=94.68 E-value=0.37 Score=40.57 Aligned_cols=62 Identities=5% Similarity=0.053 Sum_probs=44.1
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
||+|...++...-..+++++.++++++|+. +.+.....-.+.. -+++.+. ..++||+|..+.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~i~~l~-~~~vdgii~~~~ 64 (273)
T cd01541 2 IGVITTYISDYIFPSIIRGIESVLSEKGYS---LLLASTNNDPERERKCLENML-SQGIDGLIIEPT 64 (273)
T ss_pred eEEEeCCccchhHHHHHHHHHHHHHHcCCE---EEEEeCCCCHHHHHHHHHHHH-HcCCCEEEEecc
Confidence 789999999988899999999999999874 5444433333322 2334443 467999997653
No 13
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=94.59 E-value=0.18 Score=43.34 Aligned_cols=69 Identities=12% Similarity=0.059 Sum_probs=50.6
Q ss_pred CCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 72 ~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..+..+||+|...+.......|++++.++++++|+. +.+.......+....+-+.+...++||||..++
T Consensus 32 ~~~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 100 (309)
T PRK11041 32 RNESRTILVIVPDICDPFFSEIIRGIEVTAAEHGYL---VLIGDCAHQNQQEKTFVNLIITKQIDGMLLLGS 100 (309)
T ss_pred cCCCcEEEEEeCCCcCccHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 345578999999988888899999999999999973 555444444444444333345578999999875
No 14
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=94.35 E-value=0.54 Score=39.54 Aligned_cols=64 Identities=8% Similarity=0.020 Sum_probs=47.0
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHC---CCCCCCeEEEEeCCcchHHHHHHHh--hhcCCccEEEEEee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKY---SVKEENIDVVWVPGSFEIGVVAQQL--GKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~---Gv~~e~I~vv~VPGA~ELP~aak~L--~~~~~yDaVIaLG~ 143 (218)
|||+|...+.......++++..+.++++ |. +++++..+...+-....+.+ +...++||||..++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~---~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 69 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGL---ISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPA 69 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCC---eeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 7899998888888889999999999999 75 34556566665544433332 23459999999764
No 15
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=94.33 E-value=0.39 Score=40.42 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=43.8
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEe
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG 142 (218)
|||+|...+.......|++++.++++++|+. +.+...++..+.. -+++.+. ..++||+|..+
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~ 65 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVS---VDIQAAPSEGDQQGQLSIAENMI-NKGYKGLLFSP 65 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCe---EEEEccCCCCCHHHHHHHHHHHH-HhCCCEEEECC
Confidence 6899999999889999999999999999974 5555444332221 1233443 45799998643
No 16
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.10 E-value=0.48 Score=39.96 Aligned_cols=61 Identities=10% Similarity=0.030 Sum_probs=43.4
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch--HH-HHHHHhhhcCCccEEEEEee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE--IG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E--LP-~aak~L~~~~~yDaVIaLG~ 143 (218)
|||+|+..+....-..++++..++++++|+. +.......+ .. -.++.+ ...++||||..++
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~-----v~~~~~~~~~~~~~~~i~~~-~~~~~Dgiii~~~ 64 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYE-----LISTDAQGDLTKQIADVEDL-LTRGVNVLIINPV 64 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCE-----EEEEcCCCCHHHHHHHHHHH-HHcCCCEEEEecC
Confidence 6899999888888999999999999999973 333333222 22 123444 4578999998653
No 17
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=94.03 E-value=0.4 Score=40.09 Aligned_cols=60 Identities=17% Similarity=0.041 Sum_probs=43.2
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHH---HHhhhcCCccEEEEEe
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVA---QQLGKSGKYTAVLCIG 142 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aa---k~L~~~~~yDaVIaLG 142 (218)
|||+|...+.......++++..++++++|+. +.+ ++..++..... +.+. ..++||+|+..
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~--~~~~~~~~~~~~~l~~~~-~~~vdgii~~~ 63 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGD---LRV--YDAGGDDAKQADQIDQAI-AQKVDAIIIQH 63 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCE---EEE--ECCCCCHHHHHHHHHHHH-HcCCCEEEEec
Confidence 5899998888888889999999999999874 444 44555543322 3333 45799999875
No 18
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=93.89 E-value=0.52 Score=39.49 Aligned_cols=82 Identities=16% Similarity=0.291 Sum_probs=52.7
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHH-CCCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKK-YSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~-~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
||++|...+.+..-..+.+++.+.+++ .|+ +++...+..+.-- .++.+. ..++||+|..++- +.
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~~----~~-- 68 (272)
T cd06301 1 KIGVSMANFDDNFLTLLRNAMKEHAKVLGGV-----ELQFEDAKNDVATQLSQVENFI-AQGVDAIIVVPVD----TA-- 68 (272)
T ss_pred CeeEeecccCCHHHHHHHHHHHHHHHHcCCc-----EEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecCc----hh--
Confidence 689999999888899999999999999 775 3444444332221 223333 4579999987752 11
Q ss_pred HHHHHHHHHHHHHhchhcCCceEE
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
....+.+.-.+.++|+++
T Consensus 69 ------~~~~~~~~l~~~~iPvv~ 86 (272)
T cd06301 69 ------ATAPIVKAANAAGIPLVY 86 (272)
T ss_pred ------hhHHHHHHHHHCCCeEEE
Confidence 111223333567889874
No 19
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=93.87 E-value=0.36 Score=40.54 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=67.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
...||+++....+ .......++..+.++++|+. +........-+.=-+++++.. ..|+|+|.+ |
T Consensus 130 g~~~i~~l~~~~~-~~~~~r~~g~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~--~~dai~~~~----------d 193 (281)
T cd06325 130 DAKTVGVLYNPSE-ANSVVQVKELKKAAAKLGIE---VVEATVSSSNDVQQAAQSLAG--KVDAIYVPT----------D 193 (281)
T ss_pred CCcEEEEEeCCCC-ccHHHHHHHHHHHHHhCCCE---EEEEecCCHHHHHHHHHHhcc--cCCEEEEcC----------c
Confidence 4568999976544 22445678999999998874 222223333333234445543 369988743 4
Q ss_pred HHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH---HHhhCCCCCCcHHHHHHHHHHHH
Q 027801 154 AVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA---LNRAGGKSGNKGAEAALTAIEMA 210 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA---~~Rag~k~gnKG~EAA~aAleM~ 210 (218)
..+..+.+.+.+..++.++| |++.++...+ +....-....-|.+|+..+++++
T Consensus 194 ~~a~~~~~~~~~~~~~~~ip----vig~d~~~~~~~~l~tv~~~~~~~G~~a~~~l~~~l 249 (281)
T cd06325 194 NTVASAMEAVVKVANEAKIP----VIASDDDMVKRGGLATYGIDYYELGRQTGKMAAKIL 249 (281)
T ss_pred hhHHhHHHHHHHHHHHcCCC----EEEcCHHHHhCCceEEecCCHHHHHHHHHHHHHHHH
Confidence 46777888888888777899 4454444321 11111112345666666666654
No 20
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=93.86 E-value=0.52 Score=41.11 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=47.7
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHH-HHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV-AQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~a-ak~L~~~~~yDaVIaLG~ 143 (218)
.+...|+++...+....-..+++++.+.++++|.. +.+.......+.-.. ++.+ ...++||+|..+.
T Consensus 57 ~~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~---~~i~~~~~~~~~~~~~~~~l-~~~~vdGiIi~~~ 124 (329)
T TIGR01481 57 KRTTTVGVIIPDISNIYYAELARGIEDIATMYKYN---IILSNSDEDPEKEVQVLNTL-LSKQVDGIIFMGG 124 (329)
T ss_pred CCCCEEEEEeCCCCchhHHHHHHHHHHHHHHcCCE---EEEEeCCCCHHHHHHHHHHH-HhCCCCEEEEeCC
Confidence 34567999999888788889999999999999973 555444444433322 2344 4578999998874
No 21
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=93.66 E-value=0.59 Score=39.19 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=42.5
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~ 143 (218)
|||+|+..+.......++.++.+.++++|.. +.++......+.. -.++.+ ...++||+|..++
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~i~~l-~~~~vdgvii~~~ 66 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVK---VTFQGPASETDVAGQVNLLENA-IARGPDAILLAPT 66 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCE---EEEecCccCCCHHHHHHHHHHH-HHhCCCEEEEcCC
Confidence 7999999987777789999999999999874 3333221122222 223334 3468999998654
No 22
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=93.63 E-value=0.63 Score=39.03 Aligned_cols=61 Identities=8% Similarity=0.016 Sum_probs=43.6
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~ 143 (218)
|||+|...+....-..+++++.+.++++|+. + +.+++..+-. -+++.+. ..++||+|..++
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~~g~~---~--~~~~~~~~~~~~~~~i~~~~-~~~~dgiii~~~ 64 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKALGYD---A--VELSAENSAKKELENLRTAI-DKGVSGIIISPT 64 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHhcCCe---E--EEecCCCCHHHHHHHHHHHH-hcCCCEEEEcCC
Confidence 6899999888888999999999999999874 3 3344433222 3344443 467999987653
No 23
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=93.60 E-value=0.75 Score=36.66 Aligned_cols=85 Identities=9% Similarity=0.092 Sum_probs=55.4
Q ss_pred EEEEEEccc-CHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH--H-HHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 77 RFALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI--G-VVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 77 RIaIV~Srf-n~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL--P-~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
|||++...+ +......+.+++.+.+++.|. ++++..+....+- . -.++++. ..++|++|..++.- .
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~~~~~~------~ 70 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEIGR---GLEVILADSQSDPERALEALRDLI-QQGVDGIIGPPSSS------S 70 (269)
T ss_pred CceEEeecCCCcHHHHHHHHHHHHHHHHhCC---ceEEEEecCCCCHHHHHHHHHHHH-HcCCCEEEecCCCH------H
Confidence 588898888 677888999999999999432 3456666665542 2 3334444 45899999988741 1
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
. . .+.+...+.++|+++--
T Consensus 71 ~---~----~~~~~~~~~~ip~v~~~ 89 (269)
T cd01391 71 A---L----AVVELAAAAGIPVVSLD 89 (269)
T ss_pred H---H----HHHHHHHHcCCcEEEec
Confidence 0 0 13444456788987753
No 24
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=93.53 E-value=0.45 Score=39.44 Aligned_cols=62 Identities=6% Similarity=0.035 Sum_probs=44.0
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch--HHHHHHHhhhcCCccEEEEEeee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE--IGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E--LP~aak~L~~~~~yDaVIaLG~V 144 (218)
|++|...+.......+.++..+.++++|.. +.+ .+...+ .-..+-..+...++||+|..++.
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~~g~~---~~~--~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 65 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEAREAGYG---VLL--GDTRSDPEREQEYLDLLRRKQADGIILLDGS 65 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHcCCe---EEE--ecCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 788999999888899999999999999873 433 333333 12222233456789999997753
No 25
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=93.43 E-value=0.71 Score=35.80 Aligned_cols=100 Identities=22% Similarity=0.226 Sum_probs=67.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHH-HhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ-QLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak-~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
-.||+++...-+.......++|..+.++++|++..... +..++..+-..... .++++.++|||||.. +
T Consensus 9 ~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~pdaii~~~----------~ 77 (160)
T PF13377_consen 9 HRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELI-FFSDDDSEDAREAQLLWLRRLRPDAIICSN----------D 77 (160)
T ss_dssp -SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEE-EEESSSHHHHHHHHHHHHHTCSSSEEEESS----------H
T ss_pred CCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeE-eecCCcchhHHHHHHHHHhcCCCcEEEEcC----------H
Confidence 45899999888889999999999999999999744433 33444443333332 234545789999843 4
Q ss_pred HHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 154 AVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.++..+.+.+.+..++ +|==.+|++.++...+
T Consensus 78 ~~a~~~~~~l~~~g~~--vP~di~vv~~~~~~~~ 109 (160)
T PF13377_consen 78 RLALGVLRALRELGIR--VPQDISVVSFDDSPLL 109 (160)
T ss_dssp HHHHHHHHHHHHTTSC--TTTTSEEEEESSSGHH
T ss_pred HHHHHHHHHHHHcCCc--ccccccEEEecCcHHH
Confidence 5788888888887664 4433356666654443
No 26
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=93.23 E-value=0.95 Score=37.51 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=42.8
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEeee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~V 144 (218)
||+|...+....-..++++..++++++|+. +.++.....-+-. -.++.+ ...++||+|..++-
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgiii~~~~ 65 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAAGYQ---LLLGNTGYSPEREEELLRTL-LSRRPAGLILTGLE 65 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHcCCE---EEEecCCCCchhHHHHHHHH-HHcCCCEEEEeCCC
Confidence 788998888888889999999999999873 4333322211211 223444 35779999998753
No 27
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=93.10 E-value=0.86 Score=38.06 Aligned_cols=61 Identities=8% Similarity=0.020 Sum_probs=44.4
Q ss_pred EEEEEccc-CHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHh--hhcCCccEEEEEee
Q 027801 78 FALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL--GKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srf-n~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L--~~~~~yDaVIaLG~ 143 (218)
|++|...+ +......+++++.++++++|+. ++..+..++..-..+.+ +...++||+|..++
T Consensus 2 i~vi~p~~~~~~~~~~~~~g~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAEEDGVE-----VIVLDANGDVARQAAQVEDLIAQKVDGIILWPT 65 (275)
T ss_pred eEEEecccCCCHHHHHHHHHHHHHHHhcCCE-----EEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 78888888 8888999999999999998863 33345555555443332 23457999998764
No 28
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=92.99 E-value=0.87 Score=37.96 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=42.8
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
||+|...++...-..++++..++++++|+. +.+..-....+.- -.++.|. +.++||+|..++
T Consensus 2 i~vv~p~~~~~~~~~~~~~i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiii~~~ 64 (268)
T cd06273 2 IGAIVPTLDNAIFARVIQAFQETLAAHGYT---LLVASSGYDLDREYAQARKLL-ERGVDGLALIGL 64 (268)
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHHHCCCE---EEEecCCCCHHHHHHHHHHHH-hcCCCEEEEeCC
Confidence 789998888888889999999999999873 4443222222322 2334554 457999998765
No 29
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=92.96 E-value=0.93 Score=38.94 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=42.7
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHh--hhcCCccEEEEEe
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL--GKSGKYTAVLCIG 142 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L--~~~~~yDaVIaLG 142 (218)
||++|+..++......++++..++++++|+. +.++. ++.++...-.+.+ +..+++||+|..+
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~-~~~~~~~~~~~~l~~~~~~~~dgiii~~ 64 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIE---VVATT-DAQFDPAKQVADIETTISQKPDIIISIP 64 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCE---EEEec-CCCCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 7899999998888889999999999999873 33222 4444433222222 1246799998765
No 30
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=92.91 E-value=0.99 Score=39.42 Aligned_cols=61 Identities=7% Similarity=0.047 Sum_probs=43.3
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHH--CCCCCCCeEEEEeCCcch--HH-HHHHHhhhcCCccEEEEEee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKK--YSVKEENIDVVWVPGSFE--IG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~--~Gv~~e~I~vv~VPGA~E--LP-~aak~L~~~~~yDaVIaLG~ 143 (218)
||++|+..++...-..++++..+++++ .|+ ++...++-.+ -. -.++.+ ...++||+|..++
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~~~g~-----~~~~~~~~~~~~~q~~~i~~l-~~~~vdgiii~~~ 66 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKV-----EFTFYDAKNNQSTQNEQIDTA-LAKGVDLLAVNLV 66 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhhCCCe-----eEEEecCCCCHHHHHHHHHHH-HHcCCCEEEEecC
Confidence 689999999988899999999999999 554 4444454332 22 234444 3568999997653
No 31
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=92.89 E-value=0.44 Score=39.51 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=44.8
Q ss_pred EEEEEcc----cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVAR----FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Sr----fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
||||..+ |....-..|+++..+.++++|+. +.+...+..-+---.+.+++..+++||+|..++
T Consensus 2 igvi~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 68 (268)
T cd06271 2 IGLVLPTGEREEGDPFFAEFLSGLSEALAEHGYD---LVLLPVDPDEDPLEVYRRLVESGLVDGVIISRT 68 (268)
T ss_pred eEEEeCCcccccCCccHHHHHHHHHHHHHHCCce---EEEecCCCcHHHHHHHHHHHHcCCCCEEEEecC
Confidence 5777766 56777788999999999999874 666655554333334555556678999998765
No 32
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=92.78 E-value=1 Score=37.63 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=42.3
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~ 143 (218)
|++|...+.......+++++.++++++|+. +.+....+.-+ .--.++.+ ...++||+|..++
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~i~~~-~~~~~dgiii~~~ 64 (265)
T cd06291 2 IGLIVPTISNPFFSELARAVEKELYKKGYK---LILCNSDNDPEKEREYLEML-RQNQVDGIIAGTH 64 (265)
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHCCCe---EEEecCCccHHHHHHHHHHH-HHcCCCEEEEecC
Confidence 788998888888899999999999999874 33333222221 11222333 4567999998875
No 33
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=92.74 E-value=0.99 Score=37.84 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=41.5
Q ss_pred EEEEEcc---cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVAR---FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Sr---fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
||+++.. +....-..++++..+.++++|+. +.+......-+--..+...+...++||||..++
T Consensus 2 vgv~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 2 IGLIASKRILNSPAFYSEIYRAIEEEAKKYGYN---LILKFVSDEDEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred eEEEEeccccccCCcHHHHHHHHHHHHHHcCCE---EEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 6888877 67777788999999999999873 555444332222222222234578999998774
No 34
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=92.74 E-value=0.98 Score=38.88 Aligned_cols=63 Identities=8% Similarity=-0.065 Sum_probs=44.0
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
.||+|...+.......++++..++++++|+. +.++.-.+.-+-. -.++.+. ..++||||..++
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~i~~~~-~~~vdgiii~~~ 64 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKELGAE---VIVQNANGDPAKQISQIENMI-AKGVDVLVIAPV 64 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHcCCE---EEEECCCCCHHHHHHHHHHHH-HcCCCEEEEecC
Confidence 4789998888888899999999999999974 4444332222322 3334443 568999998763
No 35
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=92.62 E-value=1.2 Score=38.09 Aligned_cols=61 Identities=15% Similarity=0.017 Sum_probs=44.4
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH--H-HHHHHhhhcCCccEEEEEee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI--G-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL--P-~aak~L~~~~~yDaVIaLG~ 143 (218)
+||+|...++......++++..++++++|.. ++...+..+- - -.++.+ ...++||+|..+.
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~-----~~~~~~~~~~~~~~~~i~~l-~~~~vdgiil~~~ 65 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAIGWN-----LRILDGRGSEAGQAAALNQA-IALKPDGIVLGGV 65 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHcCcE-----EEEECCCCCHHHHHHHHHHH-HHcCCCEEEEcCC
Confidence 6899999999988999999999999999873 3334443321 1 223333 4678999999874
No 36
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=92.61 E-value=0.52 Score=39.51 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=41.4
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~ 143 (218)
|++|...++...-..+++|..++++++|+. +.+ +++-++.. -.++.+ .++++||||+.++
T Consensus 2 igvi~p~~~~~~~~~~~~g~~~~a~~~g~~---~~~--~~~~~~~~~~~~~i~~~-~~~~vdgii~~~~ 64 (268)
T cd06270 2 IGLVVSDLDGPFFGPLLSGVESVARKAGKH---LII--TAGHHSAEKEREAIEFL-LERRCDALILHSK 64 (268)
T ss_pred EEEEEccccCcchHHHHHHHHHHHHHCCCE---EEE--EeCCCchHHHHHHHHHH-HHcCCCEEEEecC
Confidence 788888888888888889999999998873 333 33333322 223333 3567999999876
No 37
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=92.47 E-value=0.98 Score=37.46 Aligned_cols=60 Identities=13% Similarity=0.248 Sum_probs=40.8
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch---HHHHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE---IGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E---LP~aak~L~~~~~yDaVIaLG~ 143 (218)
||+|...|.......++++..++++++|+. +.+ .+...+ .--.+++| ...++||+|..+.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~--~~~~~~~~~~~~~i~~l-~~~~~dgii~~~~ 64 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYENGYQ---MLL--MNTNFSIEKEIEALELL-ARQKVDGIILLAT 64 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHCCCE---EEE--EeCCCCHHHHHHHHHHH-HhcCCCEEEEeCC
Confidence 688888888888888999999999998863 333 333332 11233444 3578999998764
No 38
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=92.33 E-value=2.2 Score=35.37 Aligned_cols=101 Identities=17% Similarity=0.089 Sum_probs=61.2
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhc-CCccEEEEEeeeeeCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKS-GKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~-~~yDaVIaLG~VIrGeT~H~ 152 (218)
..||+++...-+......-++|..+.++++|+......++.-+...+-.. +++++++. ..+|||+|.+-
T Consensus 120 ~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d--------- 190 (268)
T cd06271 120 HRRIALLNPPEDLTFAQHRRAGYRRALAEAGLPLDPALIVSGDMTEEGGYAAAAELLALPDRPTAIVCSSE--------- 190 (268)
T ss_pred CCcEEEecCccccchHHHHHHHHHHHHHHhCCCCCCceEEeCCCChHHHHHHHHHHHhCCCCCCEEEEcCc---------
Confidence 46899998765544445667999999999998643334444333433322 34455444 45899998654
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.++..+.+.+.+..+. +|==..|++.++.+.+
T Consensus 191 -~~a~g~~~al~~~g~~--vp~~i~iig~d~~~~~ 222 (268)
T cd06271 191 -LMALGVLAALAEAGLR--PGRDVSVVGFDDSPPL 222 (268)
T ss_pred -HHHHHHHHHHHHhCCC--CCcceeEEEecCchHH
Confidence 2555666677765543 3322345666665544
No 39
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=92.29 E-value=0.74 Score=39.03 Aligned_cols=63 Identities=8% Similarity=0.001 Sum_probs=43.1
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
||+|...+.......|+++..++++++|+. +.++.....-+..-.+.+++...++||||..++
T Consensus 2 Igvi~p~~~~~~~~~~~~~i~~~~~~~gy~---~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (269)
T cd06297 2 ISVLLPVVATEFYRRLLEGIEGALLEQRYD---LALFPLLSLARLKRYLESTTLAYLTDGLLLASY 64 (269)
T ss_pred EEEEeCCCcChhHHHHHHHHHHHHHHCCCE---EEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 688888887788888999999999998874 444433332223334444445678999988764
No 40
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=92.15 E-value=2 Score=35.97 Aligned_cols=102 Identities=20% Similarity=0.164 Sum_probs=60.0
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhh-cCCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGK-SGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~-~~~yDaVIaLG~VIrGeT~H 151 (218)
...||+++.+.-+......-.+|.++.++++|.......+++.+-.+|-. -.++.+++ ...+|||+|-
T Consensus 115 G~~~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~---------- 184 (269)
T cd06293 115 GHRRIAFVGGPDALISARERYAGYREALAEAHIPEVPEYVCFGDYTREFGRAAAAQLLARGDPPTAIFAA---------- 184 (269)
T ss_pred CCceEEEEecCcccccHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCCEEEEc----------
Confidence 45689999765443333345699999999999864333444333333322 12344443 3568999984
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.+.++..+.+++.+..+ .+|==..|++.++...+
T Consensus 185 ~d~~a~g~~~al~~~g~--~vp~di~i~g~d~~~~~ 218 (269)
T cd06293 185 SDEIAIGLLEVLRERGL--SIPGDMSLVGFDDVGPA 218 (269)
T ss_pred CcHHHHHHHHHHHHcCC--CCccceEEEeecCchHH
Confidence 34566667777776654 34433455666665544
No 41
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=92.12 E-value=0.99 Score=38.28 Aligned_cols=84 Identities=10% Similarity=0.054 Sum_probs=51.8
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHH
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVA 156 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va 156 (218)
||++|...+.......+++++.++++++|+. +.++.....-+.=-.++.+. ..++||+|..++- +.
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~i~~~~-~~~~dgiii~~~~----~~------ 66 (289)
T cd01540 1 KIGFIVKQPEEPWFQTEWKFAKKAAKEKGFT---VVKIDVPDGEKVLSAIDNLG-AQGAKGFVICVPD----VK------ 66 (289)
T ss_pred CeeeecCCCCCcHHHHHHHHHHHHHHHcCCE---EEEccCCCHHHHHHHHHHHH-HcCCCEEEEccCc----hh------
Confidence 5889998877777789999999999999974 44332221111112334443 4779999998742 11
Q ss_pred HHHHHHHHHhchhcCCceEE
Q 027801 157 NSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 157 ~~vs~gLm~lsL~~~vPVif 176 (218)
....+++...+.++||+.
T Consensus 67 --~~~~~~~~~~~~~iPvV~ 84 (289)
T cd01540 67 --LGPAIVAKAKAYNMKVVA 84 (289)
T ss_pred --hhHHHHHHHHhCCCeEEE
Confidence 112233444457888874
No 42
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=92.08 E-value=0.72 Score=37.89 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=41.9
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH-HHHHHHhhhcCCccEEEEEee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI-GVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL-P~aak~L~~~~~yDaVIaLG~ 143 (218)
||++|...+....-..+++++.+.++++|+. +.++...+.-+- --.++++.. .++||+|..++
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~-~~vdgvi~~~~ 64 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKELGVE---LIVLDAQNDVSKQIQQIEDLIA-QGVDGIIISPV 64 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHhcCce---EEEECCCCCHHHHHHHHHHHHH-cCCCEEEEeCC
Confidence 5888888887778888889999999887763 444444332221 233444543 37899988764
No 43
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=92.02 E-value=1.9 Score=37.73 Aligned_cols=67 Identities=15% Similarity=0.074 Sum_probs=46.2
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~ 143 (218)
.....|++|...+....-..++++..+.++++|.. +.++......+ ..-.++.| ...++||||..+.
T Consensus 62 ~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~ 129 (342)
T PRK10014 62 GQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRM---VFLLQGGKDGEQLAQRFSTL-LNQGVDGVVIAGA 129 (342)
T ss_pred CCCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCE---EEEEeCCCCHHHHHHHHHHH-HhCCCCEEEEeCC
Confidence 34567999999888888888999999999999863 33332222222 23334444 3567999999875
No 44
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=91.95 E-value=0.79 Score=38.44 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=41.9
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHH-HHHhhhcCCccEEEEEeee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV-AQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~a-ak~L~~~~~yDaVIaLG~V 144 (218)
||+|...+.......++++..+.+++.|+. +.+..-...-|...- ++.| ...++||+|.+++.
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~i~~l-~~~~vdgiIi~~~~ 65 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQYGYT---VLLCNTYRGGVSEADYVEDL-LARGVRGVVFISSL 65 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHH-HHcCCCEEEEeCCC
Confidence 788888888888888889999999998863 433332222233322 3444 34578988888753
No 45
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=91.88 E-value=2 Score=36.24 Aligned_cols=64 Identities=9% Similarity=0.136 Sum_probs=43.2
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~ 143 (218)
||++|+..++......+++++.++++++|...-.+ .++.+..++-+ -.++.+ .. ++||+|..+.
T Consensus 1 ~ig~v~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~i~~~-~~-~vdgiii~~~ 67 (275)
T cd06307 1 RLGFLLPKGSNAFYRELAAALEAAAAAFPDARIRV-RIHFVESFDPAALAAALLRL-GA-RSDGVALVAP 67 (275)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhhhhccCceE-EEEEccCCCHHHHHHHHHHH-Hh-cCCEEEEeCC
Confidence 68999999999999999999999999998642111 22223333333 222333 34 8999998653
No 46
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=91.88 E-value=1.4 Score=36.49 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=41.2
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEe
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG 142 (218)
|++|...+.+.....+++++.+.++++|+. +.+ .+...+..- +++.+ ...++||+|..+
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g~~---v~~--~~~~~~~~~~~~~~~~~-~~~~~dgii~~~ 63 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKELGYE---LTV--LDAQNDAAKQLNDIEDL-ITRGVDAIIINP 63 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHcCce---EEe--cCCCCCHHHHHHHHHHH-HHcCCCEEEEcC
Confidence 788998899999999999999999998863 433 333332221 22333 346799999764
No 47
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=91.87 E-value=3 Score=34.95 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=69.5
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
...||+++...........=.+|..+.++++|+..+...++ ++.++..- +++.++++ .++|||+|.+.
T Consensus 115 g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d------ 186 (268)
T cd06270 115 GHRKIACITGPLTKEDARLRLQGYRDALAEAGIALDESLII--EGDFTEEGGYAAMQELLARGAPFTAVFCAND------ 186 (268)
T ss_pred CCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEE--ECCCCHHHHHHHHHHHHhCCCCCCEEEEcCc------
Confidence 45689999876544444455689999999999764333333 33333222 23444444 46899998763
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhC--CCCCCcHHHHHHHHHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG--GKSGNKGAEAALTAIEMA 210 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag--~k~gnKG~EAA~aAleM~ 210 (218)
.++..+.+.+.+..+ .+|==.+|++.++.+.+..=.. ........+.+..|++++
T Consensus 187 ----~~a~g~~~~l~~~g~--~ip~di~v~g~d~~~~~~~~~~~~~ti~~~~~~~g~~a~~~l 243 (268)
T cd06270 187 ----EMAAGAISALREHGI--SVPQDVSIIGFDDVLLARYLYPKLTTVHYPIEEMAQMAAKLA 243 (268)
T ss_pred ----HHHHHHHHHHHHcCC--CCCCceeEEEecCchHhhhcCCCceEeecCHHHHHHHHHHHH
Confidence 255566666655443 3454556677776555422100 112344455566666655
No 48
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=91.70 E-value=2.3 Score=38.20 Aligned_cols=65 Identities=5% Similarity=-0.042 Sum_probs=48.9
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~ 143 (218)
++..+||+|....+...-..++++..++++++|+. +..+++..+-. -.++.+ ...++||+|..++
T Consensus 23 ~~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~-----l~i~~~~~~~~~~~~~i~~l-~~~~vDGiIi~~~ 90 (330)
T PRK10355 23 AKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAK-----VFVQSANGNEETQMSQIENM-INRGVDVLVIIPY 90 (330)
T ss_pred CCCceEEEEecCCCchHHHHHHHHHHHHHHHcCCE-----EEEECCCCCHHHHHHHHHHH-HHcCCCEEEEeCC
Confidence 46789999999999999999999999999999873 44456654322 223444 3568999998764
No 49
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=91.68 E-value=1 Score=37.37 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=41.8
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~ 143 (218)
|++|...+.......+++++.++++++|+. +.++. ...+-+ -.++.+ ...++||||..+.
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~g~~---~~~~~--~~~~~~~~~~~~~~l-~~~~~dgiii~~~ 64 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAHGYQ---VLVCN--SDNDPEKEKEYLESL-LAYQVDGLIVNPT 64 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCCE---EEEEc--CCCCHHHHHHHHHHH-HHcCcCEEEEeCC
Confidence 688888888878889999999999999863 44433 333322 233444 3568999998775
No 50
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=91.62 E-value=4.6 Score=37.58 Aligned_cols=110 Identities=20% Similarity=0.200 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEEeCCc---chHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchh
Q 027801 93 LLEGALETFKKYSVKEENIDVVWVPGS---FEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 93 Ll~gA~~~L~~~Gv~~e~I~vv~VPGA---~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~ 169 (218)
+--.+.+.+..+|..+.|.--+ .|. -.+--+++.+++..++|+|++ .+-|....++.+++++.+.+.+. .
T Consensus 268 l~~~t~D~~~~~g~~~aNplDl--gg~a~~~~~~~al~~l~~dp~vd~ilv---~i~gg~~~~~~va~~i~~a~~~~--~ 340 (386)
T TIGR01016 268 LAMATMDIIKLYGGEPANFLDV--GGGASAERVREALKLVLSDKSVKVVFI---NIFGGITRCDLVAKGLVEALKEV--G 340 (386)
T ss_pred HHHHHHHHHHHcCCCCCCcEEe--cCCCCHHHHHHHHHHHHcCCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHhc--C
Confidence 3345778888899877665443 333 224456666777888999994 22266666666665555555442 1
Q ss_pred cCCceEEEEcCCCCHHHHHH---hhC--CCCCCcHHHHHHHHHHHH
Q 027801 170 SGVPCIFGVLTCDNMDQALN---RAG--GKSGNKGAEAALTAIEMA 210 (218)
Q Consensus 170 ~~vPVifGVLT~~n~eQA~~---Rag--~k~gnKG~EAA~aAleM~ 210 (218)
.++||..... ..+.+++.+ .+| ...-.-..+|+++|++++
T Consensus 341 ~~kPvvv~~~-g~~~~~~~~~L~~~G~~ip~~~~~~~Av~~~~~~~ 385 (386)
T TIGR01016 341 VNVPVVVRLE-GTNVEEGKKILAESGLNIIFATSMEEAAEKAVEAA 385 (386)
T ss_pred CCCcEEEEeC-CccHHHHHHHHHHcCCCccccCCHHHHHHHHHHhh
Confidence 2399965554 467777644 445 345567789999999875
No 51
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=91.56 E-value=2.9 Score=37.39 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=70.7
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHH---HHHHhhhc---CCccEEEEEeeeeeC
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGV---VAQQLGKS---GKYTAVLCIGAVVRG 147 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~---aak~L~~~---~~yDaVIaLG~VIrG 147 (218)
..+|+++.+.-+......-++|..+.|+++|+.. ...+ ..|.++..- +++.++++ .++|||+|-+..
T Consensus 162 ~~~i~~i~g~~~~~~~~~R~~G~~~al~~~g~~~---~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ai~~~~d~--- 235 (330)
T PRK15395 162 KIQYVLLKGEPGHPDAEARTTYVIKELNDKGIKT---EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA--- 235 (330)
T ss_pred ceEEEEEecCCCCchHHHHHHHHHHHHHhcCCCe---eeeecccCCcCHHHHHHHHHHHHhhCcCCCeeEEEECCch---
Confidence 3456777665544444455689999999999852 2222 346665543 33445544 368999987654
Q ss_pred CchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHH--hhCC-------CCCCcHHHHHHHHHHHH
Q 027801 148 DTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALN--RAGG-------KSGNKGAEAALTAIEMA 210 (218)
Q Consensus 148 eT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~--Rag~-------k~gnKG~EAA~aAleM~ 210 (218)
++..+.+++.+..+ ..+| |++.++.+.+.. |.+. ....-|.+++..+++++
T Consensus 236 -------~A~gvl~al~~~Gl-~~vp----Vvg~D~~~~~~~~~~~g~~~ttv~~~~~~~G~~a~~~l~~~l 295 (330)
T PRK15395 236 -------MAMGAVEALKAHNK-SSIP----VFGVDALPEALALVKSGAMAGTVLNDANNQAKATFDLAKNLA 295 (330)
T ss_pred -------HHHHHHHHHHhcCC-CCCe----EEeeCCCHHHHHHHHhCCceEEEecCHHHHHHHHHHHHHHHh
Confidence 67788888888776 3567 666676554433 2221 12345666665555554
No 52
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=91.54 E-value=2.1 Score=37.18 Aligned_cols=61 Identities=20% Similarity=0.160 Sum_probs=43.8
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHHh--hhcCCccEEEEEe
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQL--GKSGKYTAVLCIG 142 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~L--~~~~~yDaVIaLG 142 (218)
+|++|...+....-..+++++.++++++|+. +..+ +.-.+-....+.+ +...++||||..+
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~g~~-----v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~ 64 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKELGVD-----AIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVP 64 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHhCCe-----EEEECCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 5888888877777888999999999998863 4443 6655554443333 1246799999975
No 53
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=91.51 E-value=1.2 Score=38.96 Aligned_cols=59 Identities=7% Similarity=-0.058 Sum_probs=37.2
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEe
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG 142 (218)
||++..+++.+.-..+.++..+++++.|+. +.+. +...+.-. .++.+ ...++||||..+
T Consensus 1 ig~~~~~~~~~~~~~~~~~i~~~a~~~g~~---v~~~--~~~~~~~~q~~~i~~l-~~~~vDgIIi~~ 62 (302)
T TIGR02634 1 IGVSIDDLRLERWQKDRDIFVAAAESLGAK---VFVQ--SANGNEAKQISQIENL-IARGVDVLVIIP 62 (302)
T ss_pred CeeecCccchhhHHHHHHHHHHHHHhcCCE---EEEE--eCCCCHHHHHHHHHHH-HHcCCCEEEEeC
Confidence 577888888888888888888888888763 3333 33323221 22233 345788888765
No 54
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=91.47 E-value=2 Score=35.92 Aligned_cols=62 Identities=13% Similarity=0.016 Sum_probs=41.1
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
||+|...........+++++.+.+++.|+. +.+....+..+.- -.++.+ ...++||+|..++
T Consensus 2 i~~~~~~~~~~~~~~~~~~i~~~~~~~g~~---~~i~~~~~~~~~~~~~~~~~-~~~~vdgiii~~~ 64 (267)
T cd06322 2 IGASLLTQQHPFYIELANAMKEEAKKQKVN---LIVSIANQDLNKQLSDVEDF-ITKKVDAIVLSPV 64 (267)
T ss_pred eeEeecCcccHHHHHHHHHHHHHHHhcCCE---EEEecCCCCHHHHHHHHHHH-HHcCCCEEEEcCC
Confidence 677887777788889999999999999873 4433322222211 122333 3568999999875
No 55
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=91.04 E-value=1.6 Score=36.84 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=42.9
Q ss_pred EEEEEEccc-CHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEee
Q 027801 77 RFALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srf-n~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG~ 143 (218)
||++|...+ .......++++..+.++++|+. +.++...+ ++..- .+++|. ..++||+|..++
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~---v~~~~~~~-~~~~~~~~~i~~l~-~~~vdgiii~~~ 66 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVD---VEYRGPET-FDVADMARLIEAAI-AAKPDGIVVTIP 66 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCE---EEEECCCC-CCHHHHHHHHHHHH-HhCCCEEEEeCC
Confidence 688888887 7778889999999999999874 44443333 23332 233443 458999998774
No 56
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=90.95 E-value=1.3 Score=35.95 Aligned_cols=64 Identities=11% Similarity=0.053 Sum_probs=44.2
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~V 144 (218)
|||+|...........+.+++.+.+++.|+. +.++...+..| ..-.++.+.. .++|++|+.++-
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~~g~~---l~~~~~~~~~~~~~~~~~~~~~-~~~d~ii~~~~~ 65 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKAAGYQ---VLLANSQNDAEKQLSALENLIA-RGVDGIIIAPSD 65 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHcCCe---EEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEecCC
Confidence 5788887766667788999999999998863 45554444332 3445556654 479999987753
No 57
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=90.89 E-value=6.4 Score=33.16 Aligned_cols=120 Identities=17% Similarity=0.092 Sum_probs=73.4
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhc-CCccEEEEEeeeeeCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKS-GKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~-~~yDaVIaLG~VIrGeT~H~ 152 (218)
..||+++.+.-+......-++|..+.++++++. +..+.....++ .--+++.+++. .++|+|+|.+-.
T Consensus 125 ~~~i~~i~g~~~~~~~~~r~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~~~~d~-------- 193 (271)
T cd06312 125 GKNVLCVIHEPGNVTLEDRCAGFADGLGGAGIT---EEVIETGADPTEVASRIAAYLRANPDVDAVLTLGAP-------- 193 (271)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHHHHHhcCce---eeEeecCCCHHHHHHHHHHHHHhCCCccEEEEeCCc--------
Confidence 458999987555455556779999999999864 22332233333 22344555443 468999987543
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH--HhhC-------CCCCCcHHHHHHHHHHHHH
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL--NRAG-------GKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~--~Rag-------~k~gnKG~EAA~aAleM~~ 211 (218)
++..+.+++.+..+..+++| ++.++..++. -+.+ -....-|.+|+..+++|+.
T Consensus 194 --~a~g~~~al~~~g~~~di~v----vg~d~~~~~~~~l~~g~~~~tv~~~~~~~g~~a~~~l~~~~~ 255 (271)
T cd06312 194 --SAAPAAKALKQAGLKGKVKL----GGFDLSPATLQAIKAGYIQFAIDQQPYLQGYLPVSLLWLYKR 255 (271)
T ss_pred --cchHHHHHHHhcCCCCCeEE----EEecCCHHHHHHHhcCceEEEEecCchhhhHHHHHHHHHHHh
Confidence 56677777877776644443 3556555554 2222 2245677788777777765
No 58
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=90.86 E-value=6.3 Score=32.72 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=61.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH--H-HHHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI--G-VVAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL--P-~aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
..||+++...-+......-.+|..+.++++|++.....+ .+|.+.. . -.++.+++.+ +|||+|.+..
T Consensus 116 ~~~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~-~~av~~~~d~------- 185 (265)
T cd06299 116 HKKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLV--VLGGYSQESGYAGATKLLDQG-ATAIIAGDSM------- 185 (265)
T ss_pred CCcEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChHhE--EecCcchHHHHHHHHHHHcCC-CCEEEEcCcH-------
Confidence 458999987766556667778999999999964222222 2344332 1 1234455444 8999987653
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~ 188 (218)
.+..+.+++.+..++ +|==..|++.++.+.+.
T Consensus 186 ---~a~gv~~al~~~g~~--vp~dv~v~g~d~~~~~~ 217 (265)
T cd06299 186 ---MTIGAIRAIHDAGLV--IGEDISLIGFDDLPVFR 217 (265)
T ss_pred ---HHHHHHHHHHHhCCC--CCcceeEEEeCCHHHHh
Confidence 566777777765543 33234456667766654
No 59
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=90.66 E-value=1.2 Score=37.53 Aligned_cols=62 Identities=8% Similarity=0.129 Sum_probs=39.7
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
||+|...+....-..++++..+.++++|+. +.+..-....+-. -.++.+ ...++||+|..++
T Consensus 2 Igvv~~~~~~~~~~~~~~~i~~~a~~~g~~---~~~~~~~~~~~~~~~~i~~l-~~~~vdgii~~~~ 64 (269)
T cd06281 2 IGCLVSDITNPLLAQLFSGAEDRLRAAGYS---LLIANSLNDPERELEILRSF-EQRRMDGIIIAPG 64 (269)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCCE---EEEEeCCCChHHHHHHHHHH-HHcCCCEEEEecC
Confidence 788888887777788888888988888863 3333222222222 222333 4567898888775
No 60
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=90.62 E-value=1 Score=37.73 Aligned_cols=63 Identities=10% Similarity=0.030 Sum_probs=40.0
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
.||+|...+....-..+++++.++++++|+. +.++...+..+-- -.++. +...++||+|..++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy~---v~~~~~~~~~~~~~~~i~~-~~~~~~dgiii~~~ 64 (269)
T cd06293 1 TIGLVVPDIANPFFAELADAVEEEADARGLS---LVLCATRNRPERELTYLRW-LDTNHVDGLIFVTN 64 (269)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHH-HHHCCCCEEEEeCC
Confidence 3778887777767778888888888888863 4555444333211 12223 34567888888764
No 61
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=90.43 E-value=7.2 Score=36.35 Aligned_cols=120 Identities=20% Similarity=0.230 Sum_probs=71.4
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc---hHHHHHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF---EIGVVAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~---ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
+-||+||..-- .+---+.+.|.++|....|---+ .|.. ..--+++.+++..++|+|+++ +. |...-
T Consensus 256 ~~~i~ii~ng~------G~~~~~~D~l~~~g~~~~NPvDl--~g~~~~e~~~~aL~~l~~d~~vd~vlv~--~~-~~~~~ 324 (388)
T PRK00696 256 DGNIGCMVNGA------GLAMATMDIIKLYGGEPANFLDV--GGGATAERVAEAFKIILSDPNVKAILVN--IF-GGITR 324 (388)
T ss_pred CCcEEEEECCc------hHHHHHHHHHHHcCCCcCCeEEe--cCCCCHHHHHHHHHHHhcCCCCCEEEEE--eC-CCCCC
Confidence 35777776543 22234667888888766664333 3432 244566667778899999975 22 44433
Q ss_pred HHHHHHHHHHHHHHhchh--cCCceEEEEcCCCCHHHHHH---hhC--CCCCCcHHHHHHHHHHHH
Q 027801 152 YDAVANSAASGVLSAGVN--SGVPCIFGVLTCDNMDQALN---RAG--GKSGNKGAEAALTAIEMA 210 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~--~~vPVifGVLT~~n~eQA~~---Rag--~k~gnKG~EAA~aAleM~ 210 (218)
.+-++ ++|.++.-+ +++||.... ...+.+++.+ .+| .-.-+-..+|+++..|++
T Consensus 325 ~~~va----~~i~~~~~~~~~~kPvv~~~-~g~~~~~~~~~L~~~Gi~ip~f~~pe~A~~al~~~~ 385 (388)
T PRK00696 325 CDVIA----EGIIAAVKEVGVTVPLVVRL-EGTNVELGKKILAESGLNIIAADTLDDAAQKAVEAA 385 (388)
T ss_pred HHHHH----HHHHHHHHhcCCCCcEEEEe-CCCCHHHHHHHHHHCCCCceecCCHHHHHHHHHHHh
Confidence 34455 555554444 789995554 4456666644 333 123355678888888876
No 62
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=90.43 E-value=3.2 Score=35.86 Aligned_cols=101 Identities=18% Similarity=0.097 Sum_probs=60.0
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEE-EeCCcchHHH---HHHHhhh-cCCccEEEEEeeeeeCCch
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV-WVPGSFEIGV---VAQQLGK-SGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv-~VPGA~ELP~---aak~L~~-~~~yDaVIaLG~VIrGeT~ 150 (218)
.||+++...-.....+...+++.+.++++|.. +++++ .+.+.+..-- .++.+++ ..++|||+|
T Consensus 124 ~~I~~i~g~~~~~~~~~r~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ai~~---------- 191 (302)
T TIGR02637 124 GEIAILSAASTATNQNAWIEIMKKELKDPKYP--KVKLVATVYGDDDAQKSYQEAQGLLKSYPNLKGIIA---------- 191 (302)
T ss_pred cEEEEEECCCCCccHHHHHHHHHHHHhhccCC--CCEEEeeecCCchHHHHHHHHHHHHHhCCCccEEEe----------
Confidence 59999987544444456678999999987764 33332 2334443221 2334443 457899998
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALN 189 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~ 189 (218)
+.+..+..+.+++.+..+..++. +.|+=......|++.
T Consensus 192 ~~d~~a~ga~~al~~~g~~~~i~-vvg~d~~~~~~~~l~ 229 (302)
T TIGR02637 192 PTTVGIKAAAQAVSDAKLIGKVK-LTGLGLPSEMAKYVK 229 (302)
T ss_pred CCCchHHHHHHHHHhcCCCCCEE-EEEcCCcHHHHHHHh
Confidence 34667778888888777653433 345432333456664
No 63
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=90.18 E-value=4.8 Score=32.75 Aligned_cols=85 Identities=20% Similarity=0.096 Sum_probs=54.4
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhh-hcCCccEEEEEeeeeeCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLG-KSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~-~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
..||+++...-+........++..+.++++|...+...+...+...+ ..-.++.++ +..+.|+|+|.+
T Consensus 116 ~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~---------- 185 (264)
T cd06267 116 HRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIFAAN---------- 185 (264)
T ss_pred CceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccchhhHHHHHHHHHhcCCCCcEEEEcC----------
Confidence 56899998877766677788999999999986433334443333322 223334444 445699998731
Q ss_pred HHHHHHHHHHHHHhchh
Q 027801 153 DAVANSAASGVLSAGVN 169 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~ 169 (218)
+.++..+.+++.+..+.
T Consensus 186 ~~~a~~~~~al~~~g~~ 202 (264)
T cd06267 186 DLMAIGALRALRELGLR 202 (264)
T ss_pred cHHHHHHHHHHHHhCCC
Confidence 23556777777777664
No 64
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=90.10 E-value=3.5 Score=35.58 Aligned_cols=65 Identities=20% Similarity=0.072 Sum_probs=44.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc-hHHHHHHHhhhcCCccEEEEEe
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF-EIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~-ELP~aak~L~~~~~yDaVIaLG 142 (218)
+...|++|...+.......++++..++++++|+. +.++...+-- +-.-.++.+ ...++||+|..+
T Consensus 25 ~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~---~~~~~~~~d~~~~~~~~~~l-~~~~~dgiii~~ 90 (295)
T PRK10653 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYN---LVVLDSQNNPAKELANVQDL-TVRGTKILLINP 90 (295)
T ss_pred cCCeEEEEecCCCChHHHHHHHHHHHHHHHcCCe---EEEecCCCCHHHHHHHHHHH-HHcCCCEEEEcC
Confidence 4568999999998888899999999999999974 4443322111 122233444 346799998654
No 65
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=89.92 E-value=2.1 Score=36.06 Aligned_cols=62 Identities=3% Similarity=-0.075 Sum_probs=42.1
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
||+|.-.+....-..++++..+.++++|+. +.+....+.-|.= -.++.+ ...++||+|..+.
T Consensus 2 ~g~~~~~~~~~~~~~~~~~~~~~a~~~g~~---~~~~~~~~~~~~~~~~i~~l-~~~~vdgiIi~~~ 64 (273)
T cd06309 2 VGFSQVGAESPWRTAETKSIKDAAEKRGFD---LKFADAQQKQENQISAIRSF-IAQGVDVIILAPV 64 (273)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHHHhcCCE---EEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEcCC
Confidence 677887777777888999999999999974 4444333332221 233444 3467999998764
No 66
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=89.91 E-value=3.1 Score=34.69 Aligned_cols=100 Identities=20% Similarity=0.183 Sum_probs=59.2
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhc-CCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKS-GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~-~~yDaVIaLG~VIrGeT~H 151 (218)
...||+++.++-+......-.+|..+.++++|++.....+++-+...+-. -.++.++++ .++|||+|.
T Consensus 116 G~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~---------- 185 (269)
T cd06275 116 GHRRIGCITGPLEKAPAQQRLAGFRRAMAEAGLPVNPGWIVEGDFECEGGYEAMQRLLAQPKRPTAVFCG---------- 185 (269)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCHHHhccCCCChHHHHHHHHHHHcCCCCCcEEEEC----------
Confidence 34689999877666666666799999999998753222222223233322 134455544 468999983
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMD 185 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~e 185 (218)
.+.++..+.+.+.+..++ +|==-.|++.++.+
T Consensus 186 ~d~~a~g~~~~l~~~g~~--vp~di~vvg~d~~~ 217 (269)
T cd06275 186 NDLMAMGALCAAQEAGLR--VPQDLSIIGYDDIE 217 (269)
T ss_pred ChHHHHHHHHHHHHcCCC--CCcceEEEEeCChh
Confidence 244566666777766553 34333455555543
No 67
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.85 E-value=2 Score=35.79 Aligned_cols=62 Identities=10% Similarity=0.074 Sum_probs=39.5
Q ss_pred EEEEEcc-----cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEe
Q 027801 78 FALVVAR-----FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 78 IaIV~Sr-----fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG 142 (218)
||+|... +.......+++++.+.++++|.. +.+..-.+.-+..-.+..++.++++||+|..+
T Consensus 2 igli~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~ 68 (270)
T cd06294 2 IGVVLPPSADEAFQNPFFIEVLRGISAVANENGYD---ISLATGKNEEELLEEVKKMIQQKRVDGFILLY 68 (270)
T ss_pred EEEEeCCccccCcCCCCHHHHHHHHHHHHHHCCCE---EEEecCCCcHHHHHHHHHHHHHcCcCEEEEec
Confidence 5666643 55566678889999999998874 44433332222223444555667899999875
No 68
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=89.68 E-value=1.8 Score=36.07 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=34.4
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~ 143 (218)
|+++....+...-..+++|+.+.++++|+. +.+++..+..+ .-..+.+++...++||+|...+
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (270)
T cd01545 2 IGLLYDNPSPGYVSEIQLGALDACRDTGYQ---LVIEPCDSGSPDLAERVRALLQRSRVDGVILTPP 65 (270)
T ss_pred EEEEEcCCCcccHHHHHHHHHHHHHhCCCe---EEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCC
Confidence 566666666666667777777777777653 44444443322 1122222234456777766543
No 69
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.68 E-value=1.6 Score=36.56 Aligned_cols=62 Identities=10% Similarity=0.083 Sum_probs=42.2
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~~~yDaVIaLG~ 143 (218)
||+|...+....-..|+++..+.++++|.. +.++.-...-+.-. .++.+ ...++||+|..++
T Consensus 2 Ig~i~p~~~~~~~~~~~~~i~~~~~~~g~~---~~~~~~~~~~~~~~~~i~~l-~~~~~dgiii~~~ 64 (263)
T cd06280 2 VGLIVADIRNPFFTAVSRAVEDAAYRAGLR---VILCNTDEDPEKEAMYLELM-EEERVTGVIFAPT 64 (263)
T ss_pred EEEEecccccccHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHH-HhCCCCEEEEeCC
Confidence 788888888778888999999999999874 44332222222222 23343 4667999999875
No 70
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.51 E-value=1.9 Score=35.90 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=40.4
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~ 143 (218)
||+|+..++......++++..+.++++|+. + +.++.-.+-. -.++.+ .+.++||+|..++
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~gy~---~--~~~~~~~~~~~~~~~i~~l-~~~~~dgiii~~~ 64 (265)
T cd06290 2 IGVLTQDFASPFYGRILKGMERGLNGSGYS---P--IIATGHWNQSRELEALELL-KSRRVDALILLGG 64 (265)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHCCCE---E--EEEeCCCCHHHHHHHHHHH-HHCCCCEEEEeCC
Confidence 788888888888888899999999988863 3 3333333322 122333 4567899998865
No 71
>PRK09492 treR trehalose repressor; Provisional
Probab=89.50 E-value=1.8 Score=37.41 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=44.4
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
.+...||+|...+....-..++++..+++.++|+. +.++......+.- -.++.| ...++||+|..+.
T Consensus 60 ~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~ 127 (315)
T PRK09492 60 QSDKVVGIIVSRLDSLSENQAVRTMLPAFYEQGYD---PIIMESQFSPEKVNEHLGVL-KRRNVDGVILFGF 127 (315)
T ss_pred CCCCeEEEEecCCcCcccHHHHHHHHHHHHHcCCe---EEEEecCCChHHHHHHHHHH-HhcCCCEEEEeCC
Confidence 34457999999887767778999999999999974 3333322222222 122333 4567999999873
No 72
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.41 E-value=4.2 Score=33.67 Aligned_cols=102 Identities=23% Similarity=0.171 Sum_probs=57.7
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhc-CCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKS-GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~-~~yDaVIaLG~VIrGeT~H 151 (218)
...||+++...-+......-.+|..+.++++|+......++..+...| .--.++.++++ .++|||+|.+-
T Consensus 116 g~~~i~~l~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~-------- 187 (268)
T cd06289 116 GHRRIAFIGGLEDSSTRRERLAGYRAALAEAGLPFDSELVVEGPPSRQGGAEAVAQLLDLPPRPTAIVCFND-------- 187 (268)
T ss_pred CCCCEEEecCCccccchHHHHHHHHHHHHHcCCCCCchhEEecCcchhhHHHHHHHHHcCCCCCCEEEEcCc--------
Confidence 345899887654444455667999999999986432223332232222 22334444443 56899998763
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
..+..+.+.+.+..++ +|==..|++.++.+.+
T Consensus 188 --~~a~~~~~al~~~g~~--~p~di~iig~d~~~~~ 219 (268)
T cd06289 188 --LVAFGAMSGLRRAGLT--PGRDIAVVGFDDVAEA 219 (268)
T ss_pred --HHHHHHHHHHHHcCCC--CCcceEEEeecCchHH
Confidence 3455566666665543 2212345555555443
No 73
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=89.30 E-value=3.7 Score=36.16 Aligned_cols=64 Identities=6% Similarity=0.059 Sum_probs=51.2
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..||+|+.......-..++.+..++++++|+. +-++...+.-|.--.++.| .+.++||+|..+.
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~Gy~---l~l~~t~~~~~~e~~i~~l-~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREHGYQ---LLLCNTGDDEEKEEYIELL-LQRRVDGIILASS 65 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHTTCE---EEEEEETTTHHHHHHHHHH-HHTTSSEEEEESS
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHcCCE---EEEecCCCchHHHHHHHHH-HhcCCCEEEEecc
Confidence 36899999999888889999999999999984 6677777777777444444 5678999998855
No 74
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=89.21 E-value=2.1 Score=35.62 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=41.0
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~~~yDaVIaLG~ 143 (218)
|+++...++......|++++.+.+++.|+. +.+......-+-.. .++.+ ...++||+|..++
T Consensus 2 i~~i~~~~~~~~~~~i~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~i~~l-~~~~vdgiii~~~ 64 (260)
T cd06286 2 IGVVLPYINHPYFSQLVDGIEKAALKHGYK---VVLLQTNYDKEKELEYLELL-KTKQVDGLILCSR 64 (260)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHcCCE---EEEEeCCCChHHHHHHHHHH-HHcCCCEEEEeCC
Confidence 688888888888889999999999998863 43332222222221 22333 4567899998875
No 75
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.19 E-value=1.6 Score=36.40 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=38.9
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~ 143 (218)
||||...++......+.++..+.++++|+. +.+....+.-| ---.++.+ .++++||+|...+
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~i~~l-~~~~~dgiii~~~ 64 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAAAGYD---VVLSESGRRTSPERQWVERL-SARRTDGVILVTP 64 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHHcCCe---EEEecCCCchHHHHHHHHHH-HHcCCCEEEEecC
Confidence 677777777777777888888888887763 55554444333 22334444 3466888877654
No 76
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=89.13 E-value=5.6 Score=35.86 Aligned_cols=92 Identities=18% Similarity=0.274 Sum_probs=61.7
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC----C-cchHHHHHHHhhhcC---CccEEEEEeee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP----G-SFEIGVVAQQLGKSG---KYTAVLCIGAV 144 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP----G-A~ELP~aak~L~~~~---~yDaVIaLG~V 144 (218)
.-..|||||.|.==.-+ ...+..+++.+.. -++.++.++ + +-||--+++.+-+.+ .||.|| |
T Consensus 12 ~~p~~I~vITs~~gAa~-----~D~~~~~~~r~~~-~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dvii----i 81 (319)
T PF02601_consen 12 KFPKRIAVITSPTGAAI-----QDFLRTLKRRNPI-VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVII----I 81 (319)
T ss_pred CCCCEEEEEeCCchHHH-----HHHHHHHHHhCCC-cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEE----E
Confidence 45579999999754443 4555666666543 356666655 2 345777777776554 799997 6
Q ss_pred eeCCchhHHHHH---HHHHHHHHHhchhcCCceEEEE
Q 027801 145 VRGDTTHYDAVA---NSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 145 IrGeT~H~e~Va---~~vs~gLm~lsL~~~vPVifGV 178 (218)
+||+=.--|+-| ..++++|.+ ..+||+-||
T Consensus 82 ~RGGGs~eDL~~FN~e~varai~~----~~~PvisaI 114 (319)
T PF02601_consen 82 IRGGGSIEDLWAFNDEEVARAIAA----SPIPVISAI 114 (319)
T ss_pred ecCCCChHHhcccChHHHHHHHHh----CCCCEEEec
Confidence 799887666554 455555544 569999999
No 77
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=89.08 E-value=6.4 Score=34.16 Aligned_cols=124 Identities=23% Similarity=0.214 Sum_probs=73.0
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
...||+++.+..+......-.+|..+.|+++|+.... .+...+.++.- -+++.+++. .++|||+|.+
T Consensus 173 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~------- 243 (327)
T PRK10423 173 GYTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPD--GYEVTGDFEFNGGFDAMQQLLALPLRPQAVFTGN------- 243 (327)
T ss_pred CCCeEEEEeCCccccchHHHHHHHHHHHHHcCCCCCc--ceEEeCCCChHHHHHHHHHHhcCCCCCCEEEEcC-------
Confidence 4468999976554444456679999999999975322 22234555432 233455543 4689999843
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhC------CCCCCcHHHHHHHHHHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG------GKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag------~k~gnKG~EAA~aAleM~~ 211 (218)
|.++..+.+.+.+..+ .+|==..|++.++...+..... -.....|.+|++..+++++
T Consensus 244 ---d~~A~g~~~~l~~~g~--~vP~dvsvigfd~~~~~~~~~p~lttv~~~~~~~g~~A~~~l~~~i~ 306 (327)
T PRK10423 244 ---DAMAVGVYQALYQAGL--SVPQDIAVIGYDDIELARYMTPPLTTIHQPKDELGELAIDVLIHRMA 306 (327)
T ss_pred ---cHHHHHHHHHHHHcCC--CCCCceEEEEeCChhHHhhCCCCCceeeCCHHHHHHHHHHHHHHHhc
Confidence 4466667777776544 4565667777777655432111 1122456666666665543
No 78
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=88.96 E-value=4.3 Score=35.56 Aligned_cols=125 Identities=17% Similarity=0.118 Sum_probs=72.6
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhc-CCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKS-GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~-~~yDaVIaLG~VIrGeT~H 151 (218)
...||+++...-+..-...-.+|..+.|+++|+..+...++..+...+-.+ +++.+++. .++|||+|..
T Consensus 181 G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~n--------- 251 (342)
T PRK10014 181 GHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLECTSSQKQAAEAITALLRHNPTISAVVCYN--------- 251 (342)
T ss_pred CCCEEEEEcCCcccccHHHHHHHHHHHHHHcCCCCCcceEecCCCChHHHHHHHHHHHcCCCCCCEEEECC---------
Confidence 345899997655443334456899999999998643333333344444322 33444443 4689999754
Q ss_pred HHHHHHHHHHHHHHhchhcCCce---------EEEEcCCCCHHHHHHhhC------CCCCCcHHHHHHHHHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPC---------IFGVLTCDNMDQALNRAG------GKSGNKGAEAALTAIEMA 210 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPV---------ifGVLT~~n~eQA~~Rag------~k~gnKG~EAA~aAleM~ 210 (218)
|.++-.+.+++.+..++ +|- =..|++.++.+.+..... -.....|.+|+...++++
T Consensus 252 -d~~A~g~~~~l~~~g~~--vp~~~~~~~~p~di~vigfd~~~~~~~~~p~lttv~~~~~~~g~~a~~~L~~~i 322 (342)
T PRK10014 252 -ETIAMGAWFGLLRAGRQ--SGESGVDRYFEQQVALAAFTDVPEAELDDPPLTWASTPAREIGRTLADRMMQRI 322 (342)
T ss_pred -cHHHHHHHHHHHHcCCC--CCCccccccccCceEEEEecCchHHhcCCCCceeeecCHHHHHHHHHHHHHHHh
Confidence 45777778888876654 343 346667776655432111 112234666666555544
No 79
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=88.91 E-value=1.9 Score=37.38 Aligned_cols=67 Identities=9% Similarity=0.063 Sum_probs=46.3
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
.+...||+|+..+....-..++++..+.+.++|+. +.+....+..+-- -.++.+ ...++||+|.++.
T Consensus 54 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdGiI~~~~ 121 (327)
T PRK10423 54 NQTRTIGMLITASTNPFYSELVRGVERSCFERGYS---LVLCNTEGDEQRMNRNLETL-MQKRVDGLLLLCT 121 (327)
T ss_pred CCCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCCE---EEEEeCCCCHHHHHHHHHHH-HHcCCCEEEEeCC
Confidence 34567999998877667778999999999999974 4454444433322 233444 4567999998764
No 80
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=88.83 E-value=5 Score=34.49 Aligned_cols=95 Identities=19% Similarity=0.057 Sum_probs=59.9
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
...||+++.+.-+......-.+|..+.++++|+... .+.+.+.++..- +++++++. .++|||+|.
T Consensus 117 G~~~I~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------- 185 (269)
T cd06287 117 GARQIALIVGSARRNSYLEAEAAYRAFAAEHGMPPV---VLRVDEAGGEEAGYAACAQLLAQHPDLDALCVP-------- 185 (269)
T ss_pred CCCcEEEEeCCcccccHHHHHHHHHHHHHHcCCCcc---eeEecCCCChHHHHHHHHHHHhCCCCCCEEEEc--------
Confidence 345899997654433444566899999999998642 333444444322 33445443 468999986
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcC-CCC
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLT-CDN 183 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT-~~n 183 (218)
.|.++-.+.+++.+..++ +|==..|++ -++
T Consensus 186 --~d~~A~gvl~al~~~gl~--vP~dvsvig~~d~ 216 (269)
T cd06287 186 --VDAFAVGAVRAATELGRA--VPDQLRVVTRYDG 216 (269)
T ss_pred --CcHHHHHHHHHHHHcCCC--CCCceEEEeccCc
Confidence 456777788888776553 565556666 344
No 81
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=88.80 E-value=3.4 Score=36.38 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=77.2
Q ss_pred CCCE-EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhcC-CccEEEEEeeeeeCC
Q 027801 74 EGLR-FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSG-KYTAVLCIGAVVRGD 148 (218)
Q Consensus 74 ~~~R-IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~-~yDaVIaLG~VIrGe 148 (218)
...| |+++...-+......-++|..+.|+++|.+.+...+.+ |.+..+. ++++|++.+ .+|||+|..
T Consensus 117 Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~--~~~~~~~g~~~~~~ll~~~p~idai~~~n------ 188 (279)
T PF00532_consen 117 GHRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFE--GDFDYESGYEAARELLESHPDIDAIFCAN------ 188 (279)
T ss_dssp TCCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEE--SSSSHHHHHHHHHHHHHTSTT-SEEEESS------
T ss_pred ccCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccc--cCCCHHHHHHHHHHHHhhCCCCEEEEEeC------
Confidence 3467 99999988877888888999999999999543444443 5566553 346666655 678999864
Q ss_pred chhHHHHHHHHHHHHHHhc-hhcCCceEE-----EEcCCCCH----------------HHHHHhhCCCCCCcHHHHHHHH
Q 027801 149 TTHYDAVANSAASGVLSAG-VNSGVPCIF-----GVLTCDNM----------------DQALNRAGGKSGNKGAEAALTA 206 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~ls-L~~~vPVif-----GVLT~~n~----------------eQA~~Rag~k~gnKG~EAA~aA 206 (218)
|.++-.+.+++.+.. + .+|--. +|++-++. +|-. ..-|.+||+-.
T Consensus 189 ----d~~A~ga~~~l~~~gr~--~ip~di~~~~~~v~g~d~~~~~~~~~~~~~~lt~i~~~~-------~~~G~~a~~~l 255 (279)
T PF00532_consen 189 ----DMMAIGAIRALRERGRL--KIPEDIVSGFDSVVGFDNLEDPDFSTLEQPPLTTIQQPA-------YEMGRQAAEML 255 (279)
T ss_dssp ----HHHHHHHHHHHHHTT-T--CTTTEEEECSCCCGGHHHCCTCCT-SCCSCCEEECHHHH-------HHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCc--ccChhheeeeccchhhccccccccccccCCCeeEEecCC-------CchHHHHHHHH
Confidence 457777777777766 3 355333 33332222 2222 24589999998
Q ss_pred HHHHH
Q 027801 207 IEMAS 211 (218)
Q Consensus 207 leM~~ 211 (218)
++++.
T Consensus 256 ~~~I~ 260 (279)
T PF00532_consen 256 LERIN 260 (279)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88773
No 82
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=88.74 E-value=4.4 Score=33.73 Aligned_cols=100 Identities=20% Similarity=0.221 Sum_probs=59.8
Q ss_pred CCEEEEEEccc-CHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch--HHHHHHHhhh-cCCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE--IGVVAQQLGK-SGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srf-n~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E--LP~aak~L~~-~~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++...- +......-.+|..+.|+++|+......++..+..++ ...+ +.+++ ..++|||+|.+
T Consensus 116 ~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ai~~~~-------- 186 (268)
T cd06273 116 HRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVEAPYSIADGRAAL-RQLLEQPPRPTAVICGN-------- 186 (268)
T ss_pred CCeEEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCcHHHHHHHH-HHHHcCCCCCCEEEEcC--------
Confidence 45899997543 222334567899999999997644444555555554 2333 34443 45699999843
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
+.++..+.+.+.+..+ .+|=--.|++.++...+
T Consensus 187 --~~~a~~~~~~l~~~g~--~~p~~i~vig~d~~~~~ 219 (268)
T cd06273 187 --DVLALGALYEARRLGL--SVPEDLSIVGFDDIDGS 219 (268)
T ss_pred --hHHHHHHHHHHHHcCC--CCCCceEEEecCChhHH
Confidence 3356666666665544 34544455556665554
No 83
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=88.43 E-value=2.5 Score=36.21 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=39.9
Q ss_pred EEEEEEcc---cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 77 RFALVVAR---FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Sr---fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
|||+|..+ .....-..++++..++++++|+. +.+...-..-+.--.++.| ...++||||.+++
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy~---~~i~~~~~~~~~~~~i~~l-~~~~vdgiI~~~~ 66 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKELGIE---YKYVESKSDADYEPNLEQL-ADAGYDLIVGVGF 66 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHHcCCe---EEEEecCCHHHHHHHHHHH-HhCCCCEEEEcCc
Confidence 68888876 56677778889999999998874 3333221111111223443 4578999998765
No 84
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=88.24 E-value=2.7 Score=34.88 Aligned_cols=62 Identities=8% Similarity=0.047 Sum_probs=42.6
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc-hHH-HHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF-EIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~-ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
||+|...++......+++++.+.++++|.. +.++.-...- +.. -.++.+ .+.++||+|..++
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiii~~~ 65 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAAREAGYA---VTLSMLAEADEEALRAAVRRL-LAQRVDGVIVNAP 65 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHHCCCe---EEEEeCCCCchHHHHHHHHHH-HhcCCCEEEEeCC
Confidence 788998888888889999999999998874 4444333211 111 122333 4567999999876
No 85
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=88.09 E-value=10 Score=31.38 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=57.2
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchH---HHHHHHhhh-cCCccEEEEEeeeeeCC
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEI---GVVAQQLGK-SGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~EL---P~aak~L~~-~~~yDaVIaLG~VIrGe 148 (218)
...||+++.+.-.........+|..+.|+++ |+. +. ....+.+.. --.+..+++ ..++|+|+|-+
T Consensus 120 g~~~i~~l~~~~~~~~~~~r~~g~~~~l~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~------ 189 (268)
T cd06323 120 GKGKVVELQGIPGASAARERGKGFHEVVDKYPGLK---VV-ASQPADFDRAKGLNVMENILQAHPDIKGVFAQN------ 189 (268)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcE---EE-ecccCCCCHHHHHHHHHHHHHHCCCcCEEEEcC------
Confidence 3468999987544444556679999999985 653 11 112333332 233444443 35689988743
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~ 188 (218)
+.++..+.+++.+..+ .+++|+ | .++.+++.
T Consensus 190 ----d~~a~~~~~~l~~~g~-~di~ii-g---~d~~~~~~ 220 (268)
T cd06323 190 ----DEMALGAIEALKAAGK-DDVKVV-G---FDGTPDAL 220 (268)
T ss_pred ----CchHHHHHHHHHHcCC-CCcEEE-E---eCCCHHHH
Confidence 4467777788888777 455543 3 45555443
No 86
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=88.07 E-value=2.9 Score=34.74 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=40.6
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG~ 143 (218)
.|++|...++...-..++++..+.++++|.. +.++ +...+..- .++.+. ..++||+|..++
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~--~~~~~~~~~~~~i~~l~-~~~vdgiii~~~ 64 (268)
T cd06298 1 TVGVIIPDITNSYFAELARGIDDIATMYKYN---IILS--NSDNDKEKELKVLNNLL-AKQVDGIIFMGG 64 (268)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHHHcCCe---EEEE--eCCCCHHHHHHHHHHHH-HhcCCEEEEeCC
Confidence 3788888888888888889999999988863 3333 33333222 223333 467899998764
No 87
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=88.05 E-value=5.9 Score=34.93 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=63.6
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
...||+++...-+......=.+|..+.|+++|+..+...+ ..|.++.- -+++.+++. .++|||+|..
T Consensus 175 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~n------- 245 (343)
T PRK10727 175 GHTRIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLV--TFGEPDESGGEQAMTELLGRGRNFTAVACYN------- 245 (343)
T ss_pred CCccEEEEeCCccccchHHHHHHHHHHHHHCCCCCChhhE--EeCCCChhHHHHHHHHHHhCCCCCCEEEEcC-------
Confidence 3468999976554333344558999999999986332222 23544432 234555544 4689998854
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
|.++-.+.++|.+..+ .+|==..|++.++...+
T Consensus 246 ---D~~A~g~~~al~~~G~--~vP~disVigfD~~~~~ 278 (343)
T PRK10727 246 ---DSMAAGAMGVLNDNGI--DVPGEISLIGFDDVLVS 278 (343)
T ss_pred ---cHHHHHHHHHHHHcCC--CCCcceeEEeecCcHHH
Confidence 4578888888888765 35655566677776654
No 88
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=87.98 E-value=2.8 Score=34.93 Aligned_cols=62 Identities=10% Similarity=0.098 Sum_probs=42.0
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~ 143 (218)
||+|...+.......++++..+.+++.|+. +.+.......+ .--.++.+. ..++||||..++
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~ 64 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYRQGYN---LILCNTEGDPERQRSYLRMLA-QKRVDGLLVMCS 64 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCE---EEEEeCCCChHHHHHHHHHHH-HcCCCEEEEecC
Confidence 788888887778888889999999998874 44443332222 223334443 467899999876
No 89
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=87.93 E-value=7.6 Score=35.39 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=46.8
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEe
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG 142 (218)
..+.+|++|....+...-..+.+|+.+.++++|+. +. +.-|.-.+..- .++.+. ..++||||...
T Consensus 21 ~~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~---v~-~~~~~~~d~~~q~~~i~~li-~~~vdgIiv~~ 88 (336)
T PRK15408 21 QAAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVD---VT-YDGPTEPSVSGQVQLINNFV-NQGYNAIIVSA 88 (336)
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHHHHHHhCCE---EE-EECCCCCCHHHHHHHHHHHH-HcCCCEEEEec
Confidence 56779999998887788889999999999999974 32 22565444332 233443 57899998853
No 90
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=87.84 E-value=6.8 Score=32.63 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=62.6
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH---HHHHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI---GVVAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL---P~aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
...||+++...-+......-.+|..+.+.++|++.... ..+++.++. --++++++++ .++|||+|.+
T Consensus 114 g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~aii~~~------- 184 (265)
T cd06290 114 GHRRIAHITGPRGHIDARDRLAGYRKALEEAGLEVQPD--LIVQGDFEEESGLEAVEELLQRGPDFTAIFAAN------- 184 (265)
T ss_pred CCCeEEEEeCccccchhhHHHHHHHHHHHHcCCCCCHH--HEEecCCCHHHHHHHHHHHHcCCCCCCEEEEcC-------
Confidence 34689999876555555667799999999998753221 223444432 2245556544 4689999853
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
+.++..+.+.+.+..+ .+|==..|++.++.+.+
T Consensus 185 ---~~~a~~~~~~l~~~g~--~ip~di~vi~~d~~~~~ 217 (265)
T cd06290 185 ---DQTAYGARLALYRRGL--RVPEDVSLIGFDDLPLS 217 (265)
T ss_pred ---cHHHHHHHHHHHHcCC--CCCcceEEeeecCchHH
Confidence 3356666677766654 35555667777766544
No 91
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=87.61 E-value=2.8 Score=35.05 Aligned_cols=29 Identities=3% Similarity=0.038 Sum_probs=18.4
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCC
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSV 106 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv 106 (218)
||++...|-...-..+.++..+.++++|+
T Consensus 2 igvi~~~~~~~~~~~~~~~~~~~~~~~g~ 30 (264)
T cd06274 2 IGLIIPDLENRSFARIAKRLEALARERGY 30 (264)
T ss_pred EEEEeccccCchHHHHHHHHHHHHHHCCC
Confidence 55666665555566666666666666665
No 92
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=87.54 E-value=6.3 Score=32.90 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=63.8
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
...||+++.+.-+......-.+|..+.++++|+..+...++ .+.++..- .++.+++. .++|||+|.+..
T Consensus 113 g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~----- 185 (265)
T cd06285 113 GHRRIAVLAGPDYASTARDRLAGFRAALAEAGIEVPPERIV--YSGFDIEGGEAAAEKLLRSDSPPTAIFAVNDF----- 185 (265)
T ss_pred CCccEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEE--eCCCCHHHHHHHHHHHHcCCCCCCEEEEcCcH-----
Confidence 34689999876655555566899999999999753222222 23344322 23444433 468999998764
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
++-.+.+++.+..+ .+|==..|++.++.+.+
T Consensus 186 -----~a~g~~~~l~~~g~--~~p~di~iig~d~~~~~ 216 (265)
T cd06285 186 -----AAIGVMGAARDRGL--RVPDDVALVGYNDIPLV 216 (265)
T ss_pred -----HHHHHHHHHHHcCC--CCCcceEEEeecCcHHH
Confidence 66677777776654 35556677777776654
No 93
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=87.52 E-value=3.2 Score=37.79 Aligned_cols=66 Identities=12% Similarity=0.062 Sum_probs=48.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEe
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG 142 (218)
+..-|++|...+....-..++.|..+.+.++|.. +.+......-|----+...+...++||+|.+|
T Consensus 57 ~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy~---~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 57 RTKTIGLVVPDITNPFFAEILKGIEEAAREAGYS---LLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCE---EEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 4446899998888888889999999999999974 44444444334333444445678999999999
No 94
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=87.43 E-value=9.9 Score=33.97 Aligned_cols=66 Identities=6% Similarity=0.031 Sum_probs=46.4
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG~ 143 (218)
.++.+||+|...+....-..++++..+.++++|. +.++.+++..+-.. .++.| ...++||+|..++
T Consensus 22 ~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g~----~~~~~~~~~~~~~~~~~~i~~l-~~~~vdgiIi~~~ 90 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAPD----VQLLMNDSQNDQSKQNDQIDVL-LAKGVKALAINLV 90 (330)
T ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHHhcCC----eEEEEecCCCCHHHHHHHHHHH-HHcCCCEEEEecc
Confidence 5667899999887777888999999999999863 34444454443222 23333 4578999998754
No 95
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=87.41 E-value=7.7 Score=32.88 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=70.7
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhc-CCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKS-GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~-~~yDaVIaLG~VIrGeT~H 151 (218)
...||+++...-+......-.+|..+.++++|+.. ..+.......|-.+ +++.+++. .++|+|+| +
T Consensus 124 ~~~~i~~l~g~~~~~~~~~R~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~--------~-- 191 (268)
T cd06306 124 KPAKVAWFPGPKGAGWVKAVEKGFRDALAGSAIEI--SAIKYGDTGKEVQRKLVEEALEAHPDIDYIVG--------S-- 191 (268)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhhcCcEE--eeeccCCccHHHHHHHHHHHHHhCCCcCEEee--------c--
Confidence 34799999887666667777899999999988641 12222222333332 33444443 56898763 1
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCC----CCC---CcHHHHHHHHHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGG----KSG---NKGAEAALTAIEMA 210 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~----k~g---nKG~EAA~aAleM~ 210 (218)
+..+..+.+.+.+..+-.++.|+ |.......-+++.. |. -.. .-|..|+..+++++
T Consensus 192 -d~~a~~~~~~l~~~g~p~di~vi-g~~~~p~~~~~l~~-g~~~ttv~~~~~~~G~~a~~~l~~~l 254 (268)
T cd06306 192 -AVAAEAAVGILRQRGLTDQIKIV-STYLSHAVYRGLKR-GKILAAPTDSMVLQGRLAIDQAVRIL 254 (268)
T ss_pred -chhhhHHHHHHHhcCCCCCeEEE-ecCCCHHHHHHHHc-CceEEEEecCHHHHHHHHHHHHHHHH
Confidence 45677788888876653344444 55444445566633 31 112 23666666666654
No 96
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=87.39 E-value=3.4 Score=34.75 Aligned_cols=63 Identities=25% Similarity=0.354 Sum_probs=41.8
Q ss_pred CEEEEEEcc-------cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVAR-------FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Sr-------fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..||||+.+ +....-..+++++.+.++++|++ +.++..... +...+.+.+ ...++||||..++
T Consensus 4 ~~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~---~~v~~~~~~-~~~~~~~~l-~~~~~dgiii~~~ 73 (275)
T cd06295 4 DTIALVVPEPHERDQSFSDPFFLSLLGGIADALAERGYD---LLLSFVSSP-DRDWLARYL-ASGRADGVILIGQ 73 (275)
T ss_pred eEEEEEecCccccccccCCchHHHHHHHHHHHHHHcCCE---EEEEeCCch-hHHHHHHHH-HhCCCCEEEEeCC
Confidence 357888864 45556677888899999998874 555544333 444444433 4578999998775
No 97
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=87.27 E-value=2.5 Score=35.90 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=43.0
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC--cch-HHHHHHHhhhcCCccEEEEEe
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG--SFE-IGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG--A~E-LP~aak~L~~~~~yDaVIaLG 142 (218)
||+||+.+++......++.+..++++++|+. +.+....+ ..+ .--.++.+. ..++||||..+
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~i~~~~-~~~vdgiI~~~ 65 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRLGVS---LKLLEAGGYPNLAKQIAQLEDCA-AWGADAILLGA 65 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHcCCE---EEEecCCCCCCHHHHHHHHHHHH-HcCCCEEEEcC
Confidence 6899999999888999999999999999873 43332111 111 112345554 46899999664
No 98
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=87.27 E-value=5.4 Score=35.24 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=72.8
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc--hHHH-HHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF--EIGV-VAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~--ELP~-aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
...||++|.+.-+......-.+|..+.|+++|+......+ ..|.+ |-.+ .++++++. .++|||+|..
T Consensus 175 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~n------- 245 (346)
T PRK10401 175 GHQRIGYLSSSHGIEDDAMRRAGWMSALKEQGIIPPESWI--GTGTPDMQGGEAAMVELLGRNLQLTAVFAYN------- 245 (346)
T ss_pred CCCeEEEEeCCCcCcchHHHHHHHHHHHHHcCCCCChhhe--ecCCCChHHHHHHHHHHHcCCCCCcEEEECC-------
Confidence 3568999977655444556678999999999985332222 23433 3222 34455543 4689999864
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh------CCCCCCcHHHHHHHHHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA------GGKSGNKGAEAALTAIEMA 210 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra------g~k~gnKG~EAA~aAleM~ 210 (218)
|.++..+.+.+.+..++ +|==..|++.++.+.+..-. .-....-|.+|+...++++
T Consensus 246 ---d~~A~g~~~al~~~G~~--vP~disvigfD~~~~~~~~~p~lttv~~~~~~~g~~A~~~l~~~i 307 (346)
T PRK10401 246 ---DNMAAGALTALKDNGIA--IPLHLSIIGFDDIPIARYTDPQLTTVRYPIASMAKLATELALQGA 307 (346)
T ss_pred ---cHHHHHHHHHHHHcCCC--CCCceEEEEeCCchHHhcCCCCCceeecCHHHHHHHHHHHHHHHh
Confidence 45777788888876553 66555666667665443210 0112234666666655554
No 99
>PRK09701 D-allose transporter subunit; Provisional
Probab=87.24 E-value=3.7 Score=36.15 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=48.9
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHH---HHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV---AQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~a---ak~L~~~~~yDaVIaLG~ 143 (218)
....+|++|...+....-..+.+++.++++++|+. +.++..|+..+..-- ++.+ ...++||+|..+.
T Consensus 22 ~~~~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~---v~~~~~~~~~~~~~~~~~i~~l-~~~~vDgiIi~~~ 91 (311)
T PRK09701 22 FAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVS---VDIFASPSEGDFQSQLQLFEDL-SNKNYKGIAFAPL 91 (311)
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCe---EEEecCCCCCCHHHHHHHHHHH-HHcCCCEEEEeCC
Confidence 34569999999988888889999999999999874 444444666655433 2333 3567999998763
No 100
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=87.23 E-value=6 Score=33.33 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=43.0
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~ 143 (218)
.|+++...+.......|++++.++++++|-...+++++.+.+..+-. -.++.+ ...++||||..+.
T Consensus 1 ~Ig~i~~~~~~~f~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vDgiii~~~ 69 (274)
T cd06311 1 TIGVSIPAADHGWTAGIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLL-INRKIDALVILPF 69 (274)
T ss_pred CeeeeccCCCCcHHHHHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHH-HHcCCCEEEEeCC
Confidence 36788877777778889999999999875221235666666654322 222223 3467999998653
No 101
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=87.04 E-value=4 Score=35.12 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=67.7
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEE--EeCCcch---HHHHHHHhhhc-C-CccEEEEEeeeee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV--WVPGSFE---IGVVAQQLGKS-G-KYTAVLCIGAVVR 146 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv--~VPGA~E---LP~aak~L~~~-~-~yDaVIaLG~VIr 146 (218)
...||+++...-+......-.+|..+.++++|... .+++. ...+.+. -.-+++.++++ . ++|+|+|.
T Consensus 124 g~~~i~~l~g~~~~~~~~~R~~gf~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~I~~~----- 197 (288)
T cd01538 124 PPGNIELIAGSPTDNNAKLFFNGAMSVLKPLIDSG-KITIVGEVATPDWDPETAQKRMENALTANYNKVDGVLAA----- 197 (288)
T ss_pred CCceEEEEECCCCCchHHHHHHHHHHHHHhccccC-CeeEEeccccCCCCHHHHHHHHHHHHHhCCCCccEEEeC-----
Confidence 45689999775444444556789999999987221 12211 1223332 12334455544 3 68999986
Q ss_pred CCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh--CC-------CCCCcHHHHHHHHHHHH
Q 027801 147 GDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA--GG-------KSGNKGAEAALTAIEMA 210 (218)
Q Consensus 147 GeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra--g~-------k~gnKG~EAA~aAleM~ 210 (218)
.|.++..+.+.|.+..+.-++. |++.++...++++. +. ....-|.+|+...++++
T Consensus 198 -----~d~~a~g~~~al~~~g~~~dv~----vvg~d~~~~~~~~i~~~~~~tti~~~~~~~G~~a~~~l~~~~ 261 (288)
T cd01538 198 -----NDGTAGGAIAALKAAGLAGKPP----VTGQDAELAAVQRIVEGTQTMTVYKDIRELAEAAAELAVALL 261 (288)
T ss_pred -----CcHHHHHHHHHHHHcCCCCCce----EEecCCCHHHHHHHHhCCceEEEecCHHHHHHHHHHHHHHHh
Confidence 3456777777777766654333 44556555554431 21 13345666665555443
No 102
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=86.97 E-value=7.5 Score=32.61 Aligned_cols=100 Identities=19% Similarity=0.143 Sum_probs=57.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch--HHHHHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE--IGVVAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E--LP~aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
...||+++.+..+......-.+|..+.++++|+......++.. +.++ ...+-+.|.+...+|||+|.
T Consensus 115 G~~~i~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ai~~~---------- 183 (269)
T cd06281 115 GHRRIALVGGGSNTRPGRERLEGYKAAFAAAGLPPDPALVRLS-TPAASGFDATRALLALPDRPTAIIAG---------- 183 (269)
T ss_pred CCcEEEEecCccccccHHHHHHHHHHHHHHcCCCCCHHHeecC-cHHHHHHHHHHHHHcCCCCCcEEEEc----------
Confidence 3458999988766555556779999999999975311112221 1122 12232333334568999873
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQ 186 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQ 186 (218)
.+.++..+.++|.+..++ +|==..|++.++.+.
T Consensus 184 ~d~~a~g~~~~l~~~g~~--ip~dv~iig~d~~~~ 216 (269)
T cd06281 184 GTQVLVGVLRALREAGLR--IPRDLSVISIGDSDL 216 (269)
T ss_pred CcHHHHHHHHHHHHcCCC--CCcceeEEEecCchH
Confidence 344566677777665543 443344555565443
No 103
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=86.92 E-value=2.8 Score=36.32 Aligned_cols=62 Identities=18% Similarity=0.080 Sum_probs=41.2
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch---HHHHHHHhhhcCCccEEEEEe
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE---IGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E---LP~aak~L~~~~~yDaVIaLG 142 (218)
||++|+..++...-..+++++.++++++|+. +.+....+-.+ ---.++.+ ...++||+|..+
T Consensus 1 ~igvvvp~~~n~f~~~~~~gi~~~a~~~g~~---v~~~~~~~~~~~~~~~~~i~~l-~~~~vDgiIi~~ 65 (295)
T TIGR02955 1 KLCALYPHLKDSYWLSINYGMVEQAKHLGVE---LKVLEAGGYPNLDKQLAQIEQC-KSWGADAILLGT 65 (295)
T ss_pred CeeEEecCCCcHHHHHHHHHHHHHHHHhCCE---EEEEcCCCCCCHHHHHHHHHHH-HHcCCCEEEEec
Confidence 6888888888888888889999999998873 44443322111 21233444 357799988754
No 104
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=86.60 E-value=3.6 Score=35.79 Aligned_cols=67 Identities=6% Similarity=0.044 Sum_probs=44.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEeee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~V 144 (218)
+...|++|...+....-..++++..++++++|+. +.+...-...+-- -.++.+ ...++||+|.++..
T Consensus 60 ~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~ 127 (328)
T PRK11303 60 RTRSIGLIIPDLENTSYARIAKYLERQARQRGYQ---LLIACSDDQPDNEMRCAEHL-LQRQVDALIVSTSL 127 (328)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHHHcCCE---EEEEeCCCCHHHHHHHHHHH-HHcCCCEEEEcCCC
Confidence 4457999998877667778999999999999974 4443322112211 223333 45689999988754
No 105
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=86.54 E-value=4.2 Score=35.67 Aligned_cols=66 Identities=8% Similarity=0.018 Sum_probs=45.6
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHH-HHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV-AQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~a-ak~L~~~~~yDaVIaLG~ 143 (218)
+...|+++...+.......+++|..++++++|+. +.++.-.+..+-..- ++.+ ...++||+|..+.
T Consensus 58 ~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~i~~l-~~~~vdgiii~~~ 124 (341)
T PRK10703 58 HTKSIGLLATSSEAPYFAEIIEAVEKNCYQKGYT---LILCNAWNNLEKQRAYLSML-AQKRVDGLLVMCS 124 (341)
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHH-HHcCCCEEEEecC
Confidence 4568999999988888889999999999999974 444433332332222 2333 4567999998764
No 106
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=86.47 E-value=3.6 Score=35.90 Aligned_cols=68 Identities=9% Similarity=0.131 Sum_probs=46.2
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH-HHHHHHhhhcCCccEEEEEeee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI-GVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL-P~aak~L~~~~~yDaVIaLG~V 144 (218)
.+...|+++...+....-..++++..++++++|+. +.+....+.-+- --.++.+ ...++||+|..+..
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~---~~i~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~ 126 (327)
T TIGR02417 58 GRSRTIGLVIPDLENYSYARIAKELEQQCREAGYQ---LLIACSDDNPDQEKVVIENL-LARQVDALIVASCM 126 (327)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHH-HHcCCCEEEEeCCC
Confidence 34568999998887777788999999999999974 444443332221 1233444 45789999988753
No 107
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=86.45 E-value=4.5 Score=33.72 Aligned_cols=124 Identities=17% Similarity=0.121 Sum_probs=67.0
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhc-CCccEEEEEeeeeeCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKS-GKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~-~~yDaVIaLG~VIrGeT~H~ 152 (218)
..||+++...-.......-.+|..+.++++|+......+...+..++-. -+++++++. .++|||+|..-
T Consensus 111 ~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d--------- 181 (261)
T cd06272 111 HKKIAYIGDLSLDRRQRKRFKGFLETCDENGISISDSHIDVDGLSAEGGDNAAKKLLKESDLPTAIICGSY--------- 181 (261)
T ss_pred chhEEEeecccccccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCCHHHHHHHHHHHHcCCCCCCEEEECCc---------
Confidence 4589999765443333445689999999999742222233344444432 234555544 45899998543
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhC------CCCCCcHHHHHHHHHHHH
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG------GKSGNKGAEAALTAIEMA 210 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag------~k~gnKG~EAA~aAleM~ 210 (218)
.++..+.+++.+..++ +|==..|++.++.+++..--. -....-|.+|+...++++
T Consensus 182 -~~a~~~~~~l~~~g~~--vp~dv~vvg~d~~~~~~~~~~~lttv~~~~~~~g~~a~~~l~~~l 242 (261)
T cd06272 182 -DIALGVLSALNKQGIS--IPEDIEIISYDNIPQMAIIDPPLTAVDVPIEEIAKKSLELLLKLI 242 (261)
T ss_pred -HHHHHHHHHHHHhCCC--CCCceEEEeeCChhHHhhcCCCCceeeccHHHHHHHHHHHHHHHh
Confidence 3555666666555442 232234556666655532111 111234555555555544
No 108
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=86.44 E-value=3.1 Score=34.38 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=38.6
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
||+|...+.+..-..++++..+.++++|+. +.++..+..-+.--.++.+. +.++||+|..++
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~~g~~---~~~~~~~~~~~~~~~i~~~~-~~~vdgiii~~~ 63 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQARGYQ---PLLINTDDDEDLDAALRQLL-QYRVDGVIVTSG 63 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHCCCe---EEEEcCCCCHHHHHHHHHHH-HcCCCEEEEecC
Confidence 577777777777777788888888888863 44443333223333344443 466888887654
No 109
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=86.44 E-value=12 Score=32.63 Aligned_cols=123 Identities=21% Similarity=0.155 Sum_probs=71.0
Q ss_pred CCCEEEEEEcccCHH-HHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNEL-VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~-It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~VIrGeT 149 (218)
...||+++....+.. ....-.+|..+.|+++|+......++ .+.+... -+++++++. ++|||+|.+
T Consensus 175 G~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~--~~~~~~~~~~~~~~~ll~~-~p~ai~~~~------- 244 (329)
T TIGR01481 175 GHKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVC--EGKYSYDAGYKAFAELKGS-LPTAVFVAS------- 244 (329)
T ss_pred CCCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEE--ecCCChHHHHHHHHHHhCC-CCCEEEEcC-------
Confidence 346899997654332 23455689999999999864322222 3444322 223445443 579999854
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhC------CCCCCcHHHHHHHHHHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG------GKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag------~k~gnKG~EAA~aAleM~~ 211 (218)
|.++-.+.+++.+..+ .+|==..|++-++.+.+..-.. -....-|..|+...+++++
T Consensus 245 ---d~~A~g~~~al~~~g~--~vP~dvsvvgfd~~~~~~~~~p~lttv~~~~~~~g~~Av~~L~~~i~ 307 (329)
T TIGR01481 245 ---DEMAAGILNAAMDAGI--KVPEDLEVITSNNTRLTEMVRPQLSTIIQPLYDIGAVAMRLLTKYMN 307 (329)
T ss_pred ---cHHHHHHHHHHHHcCC--CCCCceEEEeeCCchHHhhcCCCCcEEecCHHHHHHHHHHHHHHHhc
Confidence 4577778888877655 4565556666666554421110 0122356666666666554
No 110
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=86.42 E-value=3.3 Score=36.24 Aligned_cols=65 Identities=8% Similarity=-0.010 Sum_probs=44.3
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc--hHHHHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF--EIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~--ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
....||+|...+....-..+++++.+.++++|+. +.+......- |... ++.+ ...++||+|..++
T Consensus 62 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~-~~~~-~~~~vdgiI~~~~ 128 (331)
T PRK14987 62 TSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQ---TMLAHYGYKPEMEQER-LESM-LSWNIDGLILTER 128 (331)
T ss_pred CCCEEEEEeCCCcchhHHHHHHHHHHHHHHCCCE---EEEecCCCCHHHHHHH-HHHH-HhcCCCEEEEcCC
Confidence 4457999999888778889999999999999973 3333222122 2222 2333 4678999998764
No 111
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=86.29 E-value=3.7 Score=34.73 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=34.5
Q ss_pred EEEEEEcc--cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEe
Q 027801 77 RFALVVAR--FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 77 RIaIV~Sr--fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG 142 (218)
||++|... +....-..|+++..+.+++.|+. +.+...++.-+.--..+.| ...++||+|.++
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~~gy~---~~~~~~~~~~~~~~~~~~l-~~~~vdgiii~~ 64 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKELGVE---VKYVESVEDADYEPNLRQL-AAQGYDLIFGVG 64 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHhcCce---EEEEecCCHHHHHHHHHHH-HHcCCCEEEECC
Confidence 57777764 44556667777888888877763 4443332111111222333 335678887764
No 112
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=86.27 E-value=3.5 Score=34.40 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=41.5
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
||+|..++.+.....++.+..+.++++|.. +.+...+ ..+ -..+. +.+.++||+|..++
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~-~~~--~~~~~-l~~~~vdgii~~~~ 60 (261)
T cd06272 2 IGLIWPSVSRVALTELVTGINQAISKNGYN---MNVSITP-SLA--EAEDL-FKENRFDGVIIFGE 60 (261)
T ss_pred EEEEecCCCchhHHHHHHHHHHHHHHcCCE---EEEEecc-cHH--HHHHH-HHHcCcCEEEEeCC
Confidence 788888888888888999999999988863 5555544 211 12233 35567999998775
No 113
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=86.16 E-value=3.4 Score=34.37 Aligned_cols=60 Identities=7% Similarity=-0.010 Sum_probs=35.5
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG~ 143 (218)
||+|...+....-..++++..++++++|+. +. .++...+-.- .++.+ ...++||||..+.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~---~~--~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~ 64 (265)
T cd06299 2 IGVIVPDIRNPYFASLATAIQDAASAAGYS---TI--IGNSDENPETENRYLDNL-LSQRVDGIIVVPH 64 (265)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHcCCE---EE--EEeCCCCHHHHHHHHHHH-HhcCCCEEEEcCC
Confidence 677777665555667778888888887752 33 3333222221 22333 3567888887764
No 114
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=86.08 E-value=4.3 Score=35.42 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=43.7
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH---HHHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI---GVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL---P~aak~L~~~~~yDaVIaLG~ 143 (218)
....||++...+.......++++..+.+.++|.. +.+ .+..++. --..+.+ ...++||+|.++.
T Consensus 58 ~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~---~~i--~~~~~~~~~~~~~~~~l-~~~~vdGvIi~~~ 124 (311)
T TIGR02405 58 SDKVVAVIVSRLDSPSENLAVSGMLPVFYTAGYD---PII--MESQFSPQLTNEHLSVL-QKRNVDGVILFGF 124 (311)
T ss_pred CCCEEEEEeCCcccccHHHHHHHHHHHHHHCCCe---EEE--ecCCCChHHHHHHHHHH-HhcCCCEEEEeCC
Confidence 4457999998876666778899999999999974 333 3332221 1223333 4677999999874
No 115
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=85.96 E-value=4.1 Score=33.65 Aligned_cols=58 Identities=9% Similarity=0.117 Sum_probs=32.1
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEE
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCI 141 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaL 141 (218)
||+|...+....-..+++++.+.++++|.. +.++. ..++-. -+++.| ...++||+|..
T Consensus 2 igvv~~~~~~~~~~~~~~~i~~~~~~~g~~---~~~~~--~~~~~~~~~~~~~~l-~~~~vdgiii~ 62 (266)
T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARAAGYS---LLLAT--TDYDAEREADAVETL-LRQRVDGLILT 62 (266)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHHHCCCE---EEEee--CCCCHHHHHHHHHHH-HhcCCCEEEEe
Confidence 567776666666666777777777777653 33332 222222 122333 23567777754
No 116
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=85.94 E-value=4.4 Score=32.97 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=40.2
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch---HHHHHHHhhhcCCccEEEEEeee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE---IGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E---LP~aak~L~~~~~yDaVIaLG~V 144 (218)
+|++|...++......+.+++.+.++++|+. +. ..+.-++ .--.++.+. ..++|++|..+.-
T Consensus 1 ~i~~v~~~~~~~~~~~~~~g~~~~~~~~g~~---~~--~~~~~~~~~~~~~~~~~~~-~~~~d~iii~~~~ 65 (264)
T cd06267 1 TIGVIVPDISNPFFAELLRGIEEAAREAGYS---VL--LCNSDEDPEKEREALELLL-SRRVDGIILAPSR 65 (264)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHcCCE---EE--EEcCCCCHHHHHHHHHHHH-HcCcCEEEEecCC
Confidence 3678887777777888888888888887753 33 3444443 223344443 4578888876553
No 117
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=85.69 E-value=12 Score=31.29 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=56.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
...||+++...-...-...=.+|..+.++++|+......++ ++-+... -+++.+++.+ +|||+|..
T Consensus 121 g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~l~~~-~~ai~~~~-------- 189 (273)
T cd06292 121 GHRRIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEALVA--RGMFSVEGGQAAAVELLGSG-PTAIVAAS-------- 189 (273)
T ss_pred CCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheE--eCCCCHHHHHHHHHHHhcCC-CCEEEEcC--------
Confidence 34689999765433333444689999999999753222222 3334322 2344555444 89988763
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMD 185 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~e 185 (218)
+.++..+.++|.+..+. +|==..|++.++..
T Consensus 190 --d~~a~g~~~~l~~~g~~--ip~di~ii~~d~~~ 220 (273)
T cd06292 190 --DLMALGAIRAARRRGLR--VPEDVSVVGYDDSA 220 (273)
T ss_pred --cHHHHHHHHHHHHcCCC--CCcceEEEeeCCch
Confidence 34677777888776553 33223344555544
No 118
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=85.49 E-value=4.2 Score=34.16 Aligned_cols=61 Identities=3% Similarity=0.040 Sum_probs=34.0
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcc--hHHHHHHHhhhcCCccEEEEEe
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSF--EIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~--ELP~aak~L~~~~~yDaVIaLG 142 (218)
+|+++...+.......++.+..+.+.++ |+. +.+...++.. |.... +.+ ...++||||..+
T Consensus 1 ~ig~~~~~~~~~~~~~~~~~i~~~~~~~~g~~---~~~~~~~~~~~~~~~~i-~~~-~~~~vdgiii~~ 64 (270)
T cd06308 1 VIGFSQCNLADPWRAAMNDEIQREASNYPDVE---LIIADAADDNSKQVADI-ENF-IRQGVDLLIISP 64 (270)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHhcCCcE---EEEEcCCCCHHHHHHHH-HHH-HHhCCCEEEEec
Confidence 4667776666666667777777777775 553 4444333333 22222 222 234677777655
No 119
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=85.15 E-value=14 Score=33.60 Aligned_cols=125 Identities=21% Similarity=0.210 Sum_probs=83.0
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhc-CC-ccEEEEEeeeeeC
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-GK-YTAVLCIGAVVRG 147 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~-~~-yDaVIaLG~VIrG 147 (218)
....||+++...-+......=++|.++.|+++|+... +...++|.|..- -++++++.. .+ +|||+|.-
T Consensus 173 ~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~--~~~i~~~~~~~~~g~~~~~~ll~~~~~~ptAif~~n----- 245 (333)
T COG1609 173 LGHRRIAFIGGPLDSSASRERLEGYRAALREAGLPIN--PEWIVEGDFSEESGYEAAERLLARGEPRPTAIFCAN----- 245 (333)
T ss_pred CCCceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCC--cceEEecCCChHHHHHHHHHHHhcCCCCCcEEEEcC-----
Confidence 3457899999996555555668999999999998632 445555655322 333445443 34 99999964
Q ss_pred CchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhC------CCCCCcHHHHHHHHHHHHH
Q 027801 148 DTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG------GKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 148 eT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag------~k~gnKG~EAA~aAleM~~ 211 (218)
|.++-.+.+.+.+..+. +|==..|++-+|.+.+....- -.....|.+|+...++++.
T Consensus 246 -----D~~Alg~l~~~~~~g~~--vP~disviGfDd~~~~~~~~P~LTTv~~~~~~~G~~A~~~Ll~~i~ 308 (333)
T COG1609 246 -----DLMALGALRALRELGLR--VPEDLSVIGFDDIELARFLTPPLTTVRQPIEELGRRAAELLLERIN 308 (333)
T ss_pred -----cHHHHHHHHHHHHcCCC--CCCeeEEEEecChhhhhhCCCCCeeecCCHHHHHHHHHHHHHHHHc
Confidence 45677777777776665 665567888888666543311 1234568888888887776
No 120
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=85.09 E-value=3.6 Score=34.51 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=39.2
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHh--hhcCCccEEEEEe
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL--GKSGKYTAVLCIG 142 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L--~~~~~yDaVIaLG 142 (218)
+|++|++.+....-..|..+..+++++.|. ++.++.+++..+..-..+.+ +...++||+|..+
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~ 65 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNP---GVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNA 65 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCC---CeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 478888887777777888888888888442 34555555554433222221 2346688887654
No 121
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=85.00 E-value=4.3 Score=34.64 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=41.3
Q ss_pred EEEEEcc-----cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVAR-----FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Sr-----fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
||+|+.. |.......++++..+.++++|.. +..++...|.. ..+. +...++||+|..++
T Consensus 2 igvi~p~~~~~~~~~~~~~~~~~gi~~~a~~~g~~-----~~~~~~~~~~~-~~~~-~~~~~~dgiii~~~ 65 (283)
T cd06279 2 VGVVLTDSLSYAFSDPVASQFLAGVAEVLDAAGVN-----LLLLPASSEDS-DSAL-VVSALVDGFIVYGV 65 (283)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHHHCCCE-----EEEecCccHHH-HHHH-HHhcCCCEEEEeCC
Confidence 6778777 66777788999999999998863 34444444433 2233 35678999999876
No 122
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=84.98 E-value=13 Score=35.14 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=82.5
Q ss_pred hhHhhhcccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 61 EAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 61 ~a~~~~~~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
..++.+.++ -.||+++.+.=- .=...+++.-.+.++..|++ +....||-.-|+|.+.+-|. ++.|+|..
T Consensus 150 ~lik~~~Pn-----ak~Igv~Y~p~E-~ns~~l~eelk~~A~~~Gl~---vve~~v~~~ndi~~a~~~l~--g~~d~i~~ 218 (322)
T COG2984 150 ELIKALLPN-----AKSIGVLYNPGE-ANSVSLVEELKKEARKAGLE---VVEAAVTSVNDIPRAVQALL--GKVDVIYI 218 (322)
T ss_pred HHHHHhCCC-----CeeEEEEeCCCC-cccHHHHHHHHHHHHHCCCE---EEEEecCcccccHHHHHHhc--CCCcEEEE
Confidence 445555443 348988875422 11236778888899999985 77888999999999999986 78998874
Q ss_pred EeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCC---HHHHHHhhCCCCCCcHHHHHHHHHHHHH
Q 027801 141 IGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDN---MDQALNRAGGKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 141 LG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n---~eQA~~Rag~k~gnKG~EAA~aAleM~~ 211 (218)
.|+|-. ......+++.+.+.++||+- .++ ++-|+.-.|-.-..-|.+++.-+.+.+.
T Consensus 219 -------p~dn~i---~s~~~~l~~~a~~~kiPli~----sd~~~V~~Ga~aA~gvdy~~~G~qtg~~v~~ILk 278 (322)
T COG2984 219 -------PTDNLI---VSAIESLLQVANKAKIPLIA----SDTSSVKEGALAALGVDYKDLGKQTGEMVVKILK 278 (322)
T ss_pred -------ecchHH---HHHHHHHHHHHHHhCCCeec----CCHHHHhcCcceeeccCHHHHHHHHHHHHHHHHc
Confidence 344432 23778899999999999863 222 1122322322333346777666666543
No 123
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=84.91 E-value=8.2 Score=32.26 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=58.1
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch--HH-HHHHHhhhc-CCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE--IG-VVAQQLGKS-GKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E--LP-~aak~L~~~-~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++...-.......-++|.++.++++|.. +..+...+.+. .. -+++.++++ .++|+|+|.+-.
T Consensus 125 ~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~------ 195 (277)
T cd06319 125 DGKVGMVAIPQKRKNGQKRTKGFKEAMKEAGCD---LAGIRQQKDFSYQETFDYTNDLLTANPDIRAIWLQGSD------ 195 (277)
T ss_pred CCcEEEEeccCCCccHHHHHHHHHHHHHhcCCc---eEeeccCCCCCHHHHHHHHHHHHHhCCCCCEEEECCCc------
Confidence 458999975444344556789999999999875 22233334443 22 223445443 568999987654
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALN 189 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~ 189 (218)
++..+.+.|.+..+.-++ .|++.++...+..
T Consensus 196 ----~a~g~~~al~~~g~~~di----~vvg~d~~~~~~~ 226 (277)
T cd06319 196 ----RYQGALDAIATAGKTGKV----LLICFDAEPEFIE 226 (277)
T ss_pred ----cchHHHHHHHHcCCCCCE----EEEEcCCCHHHHH
Confidence 355666666666654333 3445565555543
No 124
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=84.85 E-value=4.5 Score=33.78 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=41.6
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEeee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~V 144 (218)
||+|...+.+.....++.+..+.++++|+. +.+ .++..+.. -.++.+ ...++||+|..++-
T Consensus 2 igvi~p~~~~~~~~~~~~gi~~~~~~~~~~---~~~--~~~~~~~~~~~~~i~~l-~~~~~dgiii~~~~ 65 (265)
T cd06285 2 IGVLVPRLTDTVMATMYEGIEEAAAERGYS---TFV--ANTGDNPDAQRRAIEML-LDRRVDGLILGDAR 65 (265)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHCCCE---EEE--EeCCCCHHHHHHHHHHH-HHcCCCEEEEecCC
Confidence 788888888788889999999999999874 332 33332222 122333 45779999987653
No 125
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=84.83 E-value=32 Score=32.62 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=73.8
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc---chHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS---FEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA---~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
+|++++.= -.|.-.+.+.+..+|..+.|.--+ .|. -.+--+++.+++..++|+|++.=+ |...-.+
T Consensus 258 ~ig~i~nG------aGl~m~t~D~i~~~gg~paNPlDl--gg~a~~e~~~~aL~~ll~Dp~VdaVlv~i~---ggi~~~~ 326 (392)
T PRK14046 258 DIGCIVNG------AGLAMATMDMIKLAGGEPANFLDV--GGGASPERVAKAFRLVLSDRNVKAILVNIF---AGINRCD 326 (392)
T ss_pred cEEEEeCC------ccHHHHHHHHHHhcCCCCcCCEEe--cCCCCHHHHHHHHHHHHcCCCCCEEEEEcC---CCCCCHH
Confidence 56666521 145557789999999877665333 443 224455566677889999996322 5544445
Q ss_pred HHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHH---hhCC--CCCCcHHHHHHHHHHHHH
Q 027801 154 AVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALN---RAGG--KSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~---Rag~--k~gnKG~EAA~aAleM~~ 211 (218)
-+++++.+.+.+. +.++||+... ...+.+++.+ .+|. -..+==.|||+.|+++++
T Consensus 327 ~vA~~Ii~a~~~~--~~~kPvvv~l-~G~~~e~~~~iL~~~Gipvf~~~~~~~a~~~~v~~~~ 386 (392)
T PRK14046 327 WVAEGVVQAAREV--GIDVPLVVRL-AGTNVEEGRKILAESGLPIITADTLAEAAEKAVEAWK 386 (392)
T ss_pred HHHHHHHHHHHhc--CCCCcEEEEc-CCCCHHHHHHHHHHcCCCeeecCCHHHHHHHHHHHHh
Confidence 5665555544432 3789995544 4467777654 3331 233555899999998874
No 126
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=84.66 E-value=4.7 Score=33.34 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=37.8
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH---HHHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI---GVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL---P~aak~L~~~~~yDaVIaLG~ 143 (218)
||+|...|.......+++++.+.++++|+. ++..++..+. --.++.+. ..++||+|..++
T Consensus 2 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~-----~~~~~~~~~~~~~~~~i~~~~-~~~vdgiii~~~ 64 (268)
T cd06289 2 IGLVINDLTNPFFAELAAGLEEVLEEAGYT-----VFLANSGEDVERQEQLLSTML-EHGVAGIILCPA 64 (268)
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHHcCCe-----EEEecCCCChHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 677777777667777888888888888763 3334443322 12334443 467888888765
No 127
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=84.60 E-value=7.2 Score=33.20 Aligned_cols=62 Identities=10% Similarity=-0.113 Sum_probs=40.2
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEe
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG 142 (218)
|+|++...+....-..++++..++++++|+. +.+....+..+-- -.++.+ ...++||||..+
T Consensus 1 ~~~~~~~~~~~~f~~~~~~gi~~~~~~~G~~---~~~~~~~~d~~~~~~~i~~~-~~~~vdgiii~~ 63 (272)
T cd06313 1 KAAFSNIGLQATWCAQGKQAADEAGKLLGVD---VTWYGGALDAVKQVAAIENM-ASQGWDFIAVDP 63 (272)
T ss_pred CcceeecccCChHHHHHHHHHHHHHHHcCCE---EEEecCCCCHHHHHHHHHHH-HHcCCCEEEEcC
Confidence 4567777777777888999999999999973 4444332222211 223333 357899998865
No 128
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=84.58 E-value=14 Score=32.55 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=56.1
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAV 155 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~V 155 (218)
.||+++...-.. -.....+...+.++++|+. +..+.|+..-|++-+++.|. ++.|+++.+ +++ ++
T Consensus 132 k~igvl~~~~~~-~~~~~~~~~~~~a~~~g~~---l~~~~v~~~~~~~~~~~~l~--~~~da~~~~-------~~~--~~ 196 (294)
T PF04392_consen 132 KRIGVLYDPSEP-NSVAQIEQLRKAAKKLGIE---LVEIPVPSSEDLEQALEALA--EKVDALYLL-------PDN--LV 196 (294)
T ss_dssp -EEEEEEETT-H-HHHHHHHHHHHHHHHTT-E---EEEEEESSGGGHHHHHHHHC--TT-SEEEE--------S-H--HH
T ss_pred CEEEEEecCCCc-cHHHHHHHHHHHHHHcCCE---EEEEecCcHhHHHHHHHHhh--ccCCEEEEE-------CCc--ch
Confidence 589988764433 2346677778888888984 77889999999999998874 467877653 222 33
Q ss_pred HHHHHHHHHHhchhcCCceEE
Q 027801 156 ANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 156 a~~vs~gLm~lsL~~~vPVif 176 (218)
.+. ...+.+.+.+.++||+-
T Consensus 197 ~~~-~~~i~~~~~~~~iPv~~ 216 (294)
T PF04392_consen 197 DSN-FEAILQLANEAKIPVFG 216 (294)
T ss_dssp HHT-HHHHHHHCCCTT--EEE
T ss_pred HhH-HHHHHHHHHhcCCCEEE
Confidence 333 33488899999999954
No 129
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=84.48 E-value=5.7 Score=35.68 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=47.3
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch---HHHHHHHhhhcCCccEEEEEe
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE---IGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E---LP~aak~L~~~~~yDaVIaLG 142 (218)
+..+|++|...+.......++++..++++++|+. +.+...++..+ .--.++.+. ..++||||..+
T Consensus 45 ~t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~~---l~i~~~~~~~~~~~q~~~i~~l~-~~~vdgIIl~~ 112 (343)
T PRK10936 45 KAWKLCALYPHLKDSYWLSVNYGMVEEAKRLGVD---LKVLEAGGYYNLAKQQQQLEQCV-AWGADAILLGA 112 (343)
T ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHHHHhCCE---EEEEcCCCCCCHHHHHHHHHHHH-HhCCCEEEEeC
Confidence 4568999999888888889999999999999973 55554444332 323445554 46799999865
No 130
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=84.08 E-value=13 Score=30.87 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=57.6
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhc-CCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~-~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++.+.-+......-.+|..+.++++|.......+ +++.+..-- ++..++++ .++|||+|.+
T Consensus 122 ~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-------- 191 (270)
T cd06294 122 HKKIAFVGGDLDLEVTQDRLQGYKQALEDHGIPDRNEVI--ISLDFSEEGGYKALKKLLEQHPRPTAIVATD-------- 191 (270)
T ss_pred CccEEEecCCcccHHHHHHHHHHHHHHHHcCCCCCcceE--EecCCchHHHHHHHHHHHhCCCCCCEEEECC--------
Confidence 458999987666544555679999999999974222222 234343211 22334444 4699999854
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMD 185 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~e 185 (218)
+.++..+.+++.+..+. +|=-..|++.++.+
T Consensus 192 --d~~a~g~~~al~~~g~~--iP~dv~vig~d~~~ 222 (270)
T cd06294 192 --DLLALGVLKVLNELGLK--VPEDLSIIGFNNSI 222 (270)
T ss_pred --hHHHHHHHHHHHHcCCC--CCcceEEEeeCChh
Confidence 34667778888777664 33223344555544
No 131
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=84.06 E-value=13 Score=33.42 Aligned_cols=121 Identities=14% Similarity=0.085 Sum_probs=67.9
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH--H-HHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG--V-VAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP--~-aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
...||+++.+.-.......-.+|..+.+++.|+. +.- .+.+-++.- . .++.+++. .++|+|++ .
T Consensus 171 g~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~i~---~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~--~------ 238 (343)
T PRK10936 171 KPLNVALLPGPEGAGGSKAVEQGFRAAIAGSDVR---IVD-IAYGDNDKELQRNLLQELLERHPDIDYIAG--S------ 238 (343)
T ss_pred CCceEEEEECCCCCchHHHHHHHHHHHHhcCCCE---EEE-eecCCCcHHHHHHHHHHHHHhCCCccEEEe--C------
Confidence 3568999987655445556678999999887763 111 234444432 2 33455443 56898742 1
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhC------CCCCCcHHHHHHHHHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG------GKSGNKGAEAALTAIEMA 210 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag------~k~gnKG~EAA~aAleM~ 210 (218)
+..+..+.+++.+..+..++. +.|.......-|++.+=. .....-|.+|+..+++++
T Consensus 239 ---d~~A~ga~~al~~~g~~~di~-Vvg~~~~p~~~~~i~~G~i~~tv~q~~~~~G~~ai~~l~~~l 301 (343)
T PRK10936 239 ---AVAAEAAIGELRGRNLTDKIK-LVSFYLSHQVYRGLKRGKVLAAPSDQMVLQGRLAIDQAVRQL 301 (343)
T ss_pred ---CHHHHHHHHHHHhcCCCCCeE-EEEeCCCHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 235666777777766644443 345555555566665411 112234566666665554
No 132
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=83.99 E-value=9.7 Score=33.40 Aligned_cols=99 Identities=23% Similarity=0.289 Sum_probs=58.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhh-cCCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~-~~~yDaVIaLG~VIrGeT~ 150 (218)
..||++|.+.-+......-.+|..+.|+++|+......+ ..+.+...- .++.+++ ..++|||+|.+-.
T Consensus 178 ~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~gi~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~------ 249 (341)
T PRK10703 178 HRDIGVIPGPLERNTGAGRLAGFMKAMEEANIKVPEEWI--VQGDFEPESGYEAMQQILSQKHRPTAVFCGGDI------ 249 (341)
T ss_pred CCcEEEEeCCccccchHHHHHHHHHHHHHcCCCCChHHe--EeCCCCHHHHHHHHHHHHhCCCCCCEEEECCcH------
Confidence 458999987655555666678999999999986322222 344444221 2334444 3468999986543
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
++..+.+.|.+..+. +|==..|++.++.+.+
T Consensus 250 ----~a~g~~~al~~~g~~--ip~dv~vvgfD~~~~~ 280 (341)
T PRK10703 250 ----MAMGAICAADEMGLR--VPQDISVIGYDNVRNA 280 (341)
T ss_pred ----HHHHHHHHHHHcCCC--CCCceEEEEECCCcHH
Confidence 455566666655442 4434455555554443
No 133
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=83.84 E-value=6 Score=34.92 Aligned_cols=66 Identities=9% Similarity=-0.041 Sum_probs=44.7
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
....||+|...+....-..|++++.+.++++|.. +.+.......+-- -.++.| ...++||+|..+.
T Consensus 58 ~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~i~~l-~~~~vdgiIi~~~ 124 (343)
T PRK10727 58 STETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNF---LLIGNGYHNEQKERQAIEQL-IRHRCAALVVHAK 124 (343)
T ss_pred CCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCCE---EEEEeCCCCHHHHHHHHHHH-HhcCCCEEEEecC
Confidence 4457999999888778889999999999999973 3333333222211 233444 3567999998764
No 134
>PRK09526 lacI lac repressor; Reviewed
Probab=83.79 E-value=12 Score=32.73 Aligned_cols=96 Identities=22% Similarity=0.295 Sum_probs=58.6
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhh-cCCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~-~~~yDaVIaLG~VIrGeT 149 (218)
...||+++.+.-+......-.+|..+.|+++|+.. .. .+.|.|...- .++.+++ ..++|||+|.
T Consensus 180 G~~~I~~l~g~~~~~~~~~R~~Gf~~al~~~gi~~--~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------- 247 (342)
T PRK09526 180 GHQRIALLAGPESSVSARLRLAGWLEYLTDYQLQP--IA--VREGDWSAMSGYQQTLQMLREGPVPSAILVA-------- 247 (342)
T ss_pred CCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCc--ce--EEeCCCchHHHHHHHHHHhcCCCCCcEEEEc--------
Confidence 34699999876554444556789999999999852 22 2345554332 2344443 3568999973
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMD 185 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~e 185 (218)
.|.++..+.+.+.+..+. +|==..|++-++.+
T Consensus 248 --~d~~A~g~~~al~~~g~~--vP~disvig~d~~~ 279 (342)
T PRK09526 248 --NDQMALGVLRALHESGLR--VPGQISVIGYDDTE 279 (342)
T ss_pred --CcHHHHHHHHHHHHcCCC--CCCceEEEeeCCCc
Confidence 355777777888776653 34233444555543
No 135
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=83.54 E-value=10 Score=32.71 Aligned_cols=61 Identities=20% Similarity=0.104 Sum_probs=39.8
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEe
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG 142 (218)
|++|...........+++++.++++++|.. ..++..+...+... .++.+ ...++||||..+
T Consensus 1 Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~---~~i~~~~~~~d~~~q~~~i~~l-~~~~vdgiIi~~ 64 (302)
T TIGR02637 1 IGLVVKSLGNPFFEAANKGAEEAAKELGSV---YIIYTGPTGTTAEGQIEVVNSL-IAQKVDAIAISA 64 (302)
T ss_pred CEEEeccCCCHHHHHHHHHHHHHHHHhCCe---eEEEECCCCCCHHHHHHHHHHH-HHcCCCEEEEeC
Confidence 467777777777888999999999999952 22332344333322 23334 356799999875
No 136
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=83.49 E-value=12 Score=31.37 Aligned_cols=88 Identities=22% Similarity=0.190 Sum_probs=54.6
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCC-CCCCCeEEEEeCCcchH---HHHHHHhhhc-CCccEEEEEeeeeeCC
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYS-VKEENIDVVWVPGSFEI---GVVAQQLGKS-GKYTAVLCIGAVVRGD 148 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~G-v~~e~I~vv~VPGA~EL---P~aak~L~~~-~~yDaVIaLG~VIrGe 148 (218)
...||+++.+.-+....+.-.+|..+.+.++| +. +.. .+.+.++. --.++.++++ .+.|+|+|.+
T Consensus 124 g~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~------ 193 (272)
T cd06300 124 GKGNVLVVRGLAGHPVDEDRYAGAKEVLKEYPGIK---IVG-EVYGDWDQAVAQKAVADFLASNPDVDGIWTQG------ 193 (272)
T ss_pred CCceEEEEECCCCCcchHHHHHHHHHHHHHCCCcE---EEe-ecCCCCCHHHHHHHHHHHHHhCCCcCEEEecC------
Confidence 45689999865444455566789999999887 53 211 23344432 1233444444 4689988864
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
+. +..+.+++.+..+ ++|.+.|.
T Consensus 194 ----d~-A~g~~~al~~~g~--~~p~v~g~ 216 (272)
T cd06300 194 ----GD-AVGAVQAFEQAGR--DIPPVTGE 216 (272)
T ss_pred ----CC-cHHHHHHHHHcCC--CCcEEEee
Confidence 33 6778888888776 67755553
No 137
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=83.39 E-value=13 Score=31.33 Aligned_cols=125 Identities=18% Similarity=0.019 Sum_probs=72.3
Q ss_pred CCEEEEEEcccCHH------HHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhc-CCccEEEEEeeeee
Q 027801 75 GLRFALVVARFNEL------VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKS-GKYTAVLCIGAVVR 146 (218)
Q Consensus 75 ~~RIaIV~Srfn~~------It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~-~~yDaVIaLG~VIr 146 (218)
..||+++....... ....-++|.++.++++|++.....++...-.++-. -+++++++. .++|||+|..-
T Consensus 113 ~~~i~~i~~~~~~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d--- 189 (269)
T cd06297 113 PGRIGAITVEEEPDRAFRRTVFAERRAGFQQALKDAGRPFSPDLLAITDHSEEGGRLAMRHLLEKASPPLAVFASAD--- 189 (269)
T ss_pred CCceEEEeCccccccccccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhhHHHHHHHHHcCCCCCcEEEEcCc---
Confidence 45899997765444 55567899999999999863221233322223222 244555544 46899998653
Q ss_pred CCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHH-h---hCCCCCCcHHHHHHHHHHHHH
Q 027801 147 GDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALN-R---AGGKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 147 GeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~-R---ag~k~gnKG~EAA~aAleM~~ 211 (218)
.++..+.+++.+..+ .+|==..|++.++...+.. . ..-.....|.+|++.++++++
T Consensus 190 -------~~a~g~~~~l~~~g~--~vP~di~vvg~d~~~~~~~~~lttv~~~~~~~g~~av~~l~~~i~ 249 (269)
T cd06297 190 -------QQALGALQEAVELGL--TVGEDVRVVGFDDHPFAREAGLSTLAQPVEAMGARAAQLLLERLE 249 (269)
T ss_pred -------HHHHHHHHHHHHcCC--CCCCceEEEEECCchhhccCCceeeecCHHHHHHHHHHHHHHHhc
Confidence 377778888877554 3443344555555544421 1 111233456666666666654
No 138
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=83.08 E-value=23 Score=29.82 Aligned_cols=120 Identities=8% Similarity=0.014 Sum_probs=65.4
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhh-cCCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGK-SGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~-~~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++....+......-.+|..+.+++++...+...+ ..+.++.. -.++++++ ..++|||+|.+-.
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~------ 196 (275)
T cd06307 125 PGKVAVLAGSHRFRGHEEREMGFRSVLREEFPGLRVLET--LEGLDDPARAYEATRKLLARHPDLVGIYNAGGG------ 196 (275)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHHHHHhhCCCcEEEee--ccCCCChHHHHHHHHHHHHhCCCceEEEECCCC------
Confidence 469999988766455667789999999998864222222 23444322 24445543 3568999887531
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHh--hC-------CCCCCcHHHHHHHHHHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR--AG-------GKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~R--ag-------~k~gnKG~EAA~aAleM~~ 211 (218)
+ ..+.+++.+..+.-+ --|++.++.+.+... .+ -....-|.+|+...++++.
T Consensus 197 ----~-~g~~~al~~~g~~~d----i~Ivg~d~~~~~~~~i~~~~l~~tv~~~~~~~g~~a~~~l~~~~~ 257 (275)
T cd06307 197 ----N-RGVIRALREAGRAGK----VVFVGHELTPETRAALRDGTIDAVIDQDPGHLARSAVRVLLAACD 257 (275)
T ss_pred ----h-HHHHHHHHHcCCCCC----cEEEEecCChHHHHHHHcCeeEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 2 245566665554312 224444555554431 11 1122345555555555543
No 139
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=82.70 E-value=18 Score=29.87 Aligned_cols=101 Identities=19% Similarity=0.243 Sum_probs=59.9
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhc-CCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKS-GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~-~~yDaVIaLG~VIrGeT~H 151 (218)
...||+++...-+......-.+|..+.|+++|.....+.....+-.++-. -+++.++++ .++|||+|...
T Consensus 115 g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-------- 186 (268)
T cd01575 115 GYRRIGFLGARMDDTRAQQRLEGFRAALRAAGLDPPLVVTTPEPSSFALGRELLAELLARWPDLDAVFCSND-------- 186 (268)
T ss_pred CCCcEEEecCCCCcccHHHHHHHHHHHHHHcCCCCCceeEeccCCCHHHHHHHHHHHHhCCCCCCEEEECCc--------
Confidence 34589999877653444556789999999999753333333333333322 244555544 46899998543
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQ 186 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQ 186 (218)
.++..+.+.+.+..+ .+|==..|++.++...
T Consensus 187 --~~a~~~~~~l~~~g~--~~p~di~vig~d~~~~ 217 (268)
T cd01575 187 --DLALGALFECQRRGI--SVPEDIAIAGFGDLEI 217 (268)
T ss_pred --HHHHHHHHHHHHhCC--CCCcceEEEecCCchh
Confidence 345566666665443 2454455666665544
No 140
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=82.43 E-value=14 Score=30.66 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=67.0
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE--eCCcchHHHHH---HHhhhcCCccEEEEEeeeeeCCc
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW--VPGSFEIGVVA---QQLGKSGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~--VPGA~ELP~aa---k~L~~~~~yDaVIaLG~VIrGeT 149 (218)
+.+|+++...-+......-.++..+.|++++ +++++. .+..+...-+. +.+++.++.|+|+|..
T Consensus 122 ~~~v~~~~~~~~~~~~~~r~~g~~~~l~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~------- 190 (257)
T PF13407_consen 122 KGKVLILSGSPGNPNTQERLEGFRDALKEYP----GVEIVDEYEYTDWDPEDARQAIENLLQANPVDAIIACN------- 190 (257)
T ss_dssp TEEEEEEESSTTSHHHHHHHHHHHHHHHHCT----TEEEEEEEEECTTSHHHHHHHHHHHHHHTTEEEEEESS-------
T ss_pred CceEEeccCCCCchHHHHHHHHHHHHHhhcc----eeeeeeeeeccCCCHHHHHHHHHHhhhcCCceEEEeCC-------
Confidence 3789999888887777777899999999954 355554 23334433333 3444444588888754
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHh
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~R 190 (218)
+..+..+.+.|.+..+. +.|.+.|+=..+..-+++.+
T Consensus 191 ---~~~~~g~~~al~~~g~~-~~~~v~g~d~~~~~~~~i~~ 227 (257)
T PF13407_consen 191 ---DGMALGAAQALQQAGRA-GKVIVVGFDGSPEALEAIKD 227 (257)
T ss_dssp ---HHHHHHHHHHHHHTTCT-TTSEEEEEECHHHHHHHHHT
T ss_pred ---ChHHHHHHHHHHHcCCc-ccceeecCCCCHHHHHHHHC
Confidence 34666899999998884 55667777554444455533
No 141
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=82.25 E-value=4.5 Score=35.84 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCC-CCHHHHHHhhC
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTC-DNMDQALNRAG 192 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~-~n~eQA~~Rag 192 (218)
-||||.+.++++...-+++-|+-.|.+-. -+.|||.+.-+
T Consensus 139 TyvCNhvmY~~l~~~~~~~~~~~~GFiHvPy~peqa~~~~~ 179 (207)
T COG2039 139 TYVCNHVMYGLLHHLAKKGPPVRAGFIHVPYLPEQAARKPN 179 (207)
T ss_pred hhhhHHHHHHHHHHHHHhCCCCcceeEeecCCHHHHhCCCC
Confidence 69999999999999999999999999876 68999987754
No 142
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=82.19 E-value=8.4 Score=31.35 Aligned_cols=74 Identities=9% Similarity=0.091 Sum_probs=49.5
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHH-----------HHH
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASG-----------VLS 165 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~g-----------Lm~ 165 (218)
.+.|+++|.. -.....||.-.| |--+++.+.+..++|-||+.|-+-.| ++|++.+++.+- +..
T Consensus 26 ~~~l~~~G~~--v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g---~~D~t~~al~~~~~~~l~g~~~~~~~ 100 (152)
T cd00886 26 VELLEEAGHE--VVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLA---PRDVTPEATRPLLDKELPGFGEAFRA 100 (152)
T ss_pred HHHHHHcCCe--eeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC---CCcCcHHHHHHHhCCcCccHHHHHHH
Confidence 4458888874 455667888886 55556666543479999999998544 445555555543 456
Q ss_pred hchhcCCceEE
Q 027801 166 AGVNSGVPCIF 176 (218)
Q Consensus 166 lsL~~~vPVif 176 (218)
++++-+.|.++
T Consensus 101 ~~~~pg~~~~~ 111 (152)
T cd00886 101 LSLEETGTAML 111 (152)
T ss_pred hhcccCCcEEE
Confidence 77777766654
No 143
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=81.67 E-value=7.5 Score=34.35 Aligned_cols=66 Identities=9% Similarity=-0.045 Sum_probs=44.1
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~ 143 (218)
+...|+++...+....-..++++..+.++++|.. +.+..-....+ .--.++.+ ...++||+|.++.
T Consensus 58 ~~~~Igvi~~~~~~~f~~~l~~gi~~~~~~~gy~---~~~~~~~~~~~~~~~~i~~l-~~~~vdGiIi~~~ 124 (346)
T PRK10401 58 VSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKY---VLIGNSYHEAEKERHAIEVL-IRQRCNALIVHSK 124 (346)
T ss_pred CCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCE---EEEEcCCCChHHHHHHHHHH-HhcCCCEEEEeCC
Confidence 4457999998887777888999999999999873 33332222211 11233444 3567999998864
No 144
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=81.55 E-value=6.4 Score=32.80 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=45.7
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhh--hcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLG--KSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~--~~~~yDaVIaLG~ 143 (218)
|+||........-..+.+++.+.++++|+. +.++ .++-+...--.+.+- -..++||||....
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~---~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~ 64 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYE---VEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPV 64 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCE---EEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESS
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCE---EEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCC
Confidence 688888888889999999999999999873 3333 577777765554441 2466999995443
No 145
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=81.30 E-value=6.9 Score=32.56 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=52.0
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHH--------HHHHHHhch
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSA--------ASGVLSAGV 168 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~v--------s~gLm~lsL 168 (218)
...|++.|.. -...-.||.-.| |--+++.+++..++|.||+-|-+--|+.++---+-..+ ..-+-.+++
T Consensus 28 ~~~L~~~G~~--v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~~l~~~~l~G~~~~~~~i~~ 105 (163)
T TIGR02667 28 VERLTEAGHR--LADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALEPLFDKTVEGFGELFRQLSY 105 (163)
T ss_pred HHHHHHCCCe--EEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHHHHHCCcCCcHHHHHHHHhh
Confidence 3447778874 455667898877 55556666545789999999998666555543333322 234677788
Q ss_pred hc-CCceE-----EEEc
Q 027801 169 NS-GVPCI-----FGVL 179 (218)
Q Consensus 169 ~~-~vPVi-----fGVL 179 (218)
+- +.|.+ +|++
T Consensus 106 ~p~G~~~~lsr~~~g~~ 122 (163)
T TIGR02667 106 EEIGTSTIQSRALAGLA 122 (163)
T ss_pred cccCHHHHHhhhhheee
Confidence 84 78864 6654
No 146
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=81.02 E-value=30 Score=28.75 Aligned_cols=122 Identities=15% Similarity=0.087 Sum_probs=66.9
Q ss_pred CCEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhh-cCCccEEEEEeeeeeCCc
Q 027801 75 GLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGK-SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~-~~~yDaVIaLG~VIrGeT 149 (218)
..||+++....+ ......-.+|..+.|+++|...+. +..++.++.. -.++.+++ ..+.|||+|.+
T Consensus 112 ~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~------- 181 (265)
T cd06291 112 CKHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVRI---IEIQENFDDAEKKEEIKELLEEYPDIDGIFASN------- 181 (265)
T ss_pred CcEEEEEccCcccccchHHHHHHHHHHHHHcCCCCCh---heeeccccchHHHHHHHHHHhCCCCCCEEEECC-------
Confidence 458999987666 355666678999999999986332 2233444322 12334443 34579988843
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHh------hCCCCCCcHHHHHHHHHHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR------AGGKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~R------ag~k~gnKG~EAA~aAleM~~ 211 (218)
+..+..+.+.+.+..++ +|=-..|++-++.+.+..- ..-....-|.+|++.+++++.
T Consensus 182 ---d~~a~~~~~al~~~g~~--vp~di~v~g~d~~~~~~~~~~~~~tv~~~~~~~g~~a~~~l~~~i~ 244 (265)
T cd06291 182 ---DLTAILVLKEAQQRGIR--VPEDLQIIGYDGTKLTRLYTPELTTIRQPIEEIAKTAVDLLIKQIE 244 (265)
T ss_pred ---hHHHHHHHHHHHHcCCC--CCcceEEeccCChHHHhhcCCCceeecCCHHHHHHHHHHHHHHHHc
Confidence 33455666677665543 2312234455555443221 111122346666666665544
No 147
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=80.59 E-value=14 Score=32.39 Aligned_cols=98 Identities=20% Similarity=0.215 Sum_probs=58.8
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhc-CCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKS-GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~-~~yDaVIaLG~VIrGeT~H 151 (218)
...||+++.+.-+.. ...-.+|..+.|+++|+.... .++.....+|-. -+++.+++. .++|||+|.
T Consensus 179 Gh~~I~~i~~~~~~~-~~~R~~Gf~~al~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~---------- 246 (331)
T PRK14987 179 GHRHIAYLGARLDER-TIIKQKGYEQAMLDAGLVPYS-VMVEQSSSYSSGIELIRQARREYPQLDGVFCT---------- 246 (331)
T ss_pred CCceEEEEcCCCccc-HHHHHHHHHHHHHHcCCCccc-eeecCCCChhhHHHHHHHHHhcCCCCCEEEEC----------
Confidence 346899996554432 234579999999999974322 122223333322 234555544 468999983
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMD 185 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~e 185 (218)
.|.++..+.+++.+..+ .+|==..|++.++.+
T Consensus 247 nD~~A~g~~~al~~~g~--~vP~disvigfD~~~ 278 (331)
T PRK14987 247 NDDLAVGAAFECQRLGL--KVPDDMAIAGFHGHD 278 (331)
T ss_pred CcHHHHHHHHHHHHcCC--CCCCccEEEeeCCch
Confidence 45677777788777655 356444556666554
No 148
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=80.55 E-value=4.6 Score=34.10 Aligned_cols=55 Identities=11% Similarity=0.189 Sum_probs=37.7
Q ss_pred EEEEEEc-----ccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEe
Q 027801 77 RFALVVA-----RFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 77 RIaIV~S-----rfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG 142 (218)
|||+|.. .+....-..+++++.+.++++|+. +.+..-++ +.. . ...++||+|..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~--~~~----~--~~~~vdgii~~~ 60 (270)
T cd01544 1 RIAIVQWYSEEEELDDPYYLSIRLGIEKRAQELGIE---LTKFFRDD--DLL----E--ILEDVDGIIAIG 60 (270)
T ss_pred CeEEEEeccccccccCccHHHHHHHHHHHHHHcCCE---EEEEeccc--hhH----H--hccCcCEEEEec
Confidence 6788887 555667778889999999998874 44443322 111 1 346799999876
No 149
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=80.50 E-value=7.3 Score=32.64 Aligned_cols=65 Identities=11% Similarity=0.181 Sum_probs=44.0
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCC-CCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVK-EENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~-~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~ 143 (218)
||||+.. +.......++++..++++++|.. ..++.++......+-. -.++++. +.++|++|.++.
T Consensus 1 ~igv~~~-~~~~~~~~~~~gi~~~~~~~g~~~g~~v~l~~~~~~~~~~~~~~~~~~l~-~~~vd~iI~~~~ 69 (281)
T cd06325 1 KVGILQL-VEHPALDAARKGFKDGLKEAGYKEGKNVKIDYQNAQGDQSNLPTIARKFV-ADKPDLIVAIAT 69 (281)
T ss_pred CeEEecC-CCCcchHHHHHHHHHHHHHhCccCCceEEEEEecCCCCHHHHHHHHHHHH-hcCCCEEEEcCc
Confidence 6888886 77778889999999999999862 1234554444333322 2334444 468999999864
No 150
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=80.42 E-value=23 Score=29.34 Aligned_cols=124 Identities=16% Similarity=0.134 Sum_probs=70.9
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhc-CCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKS-GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~-~~yDaVIaLG~VIrGeT~H 151 (218)
...||+++...=+......-.+|..+.|+++|.+.....+++-+..++ .--..+.+++. .++|||+|..
T Consensus 113 g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~--------- 183 (260)
T cd06286 113 GYRKIAYCIGRKKSLNSQSRKKAYKDALEEYGLTPDEEWIFEGCFTIEDGERIGHQLLKMKDRPDAIFTGS--------- 183 (260)
T ss_pred CCceEEEEcCCcccchhHHHHHHHHHHHHHcCCCCChHheEeCCCCHHHHHHHHHHHHcCCCCCCEEEEcc---------
Confidence 456899997654444455667999999999997533333333222322 12234455543 5799988764
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhC-----CCCCCcHHHHHHHHHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG-----GKSGNKGAEAALTAIEMA 210 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag-----~k~gnKG~EAA~aAleM~ 210 (218)
+.++..+.+.+.+..++ +|==..|++.++.+.+ ..-. -.....|.+|+..+++++
T Consensus 184 -d~~a~~~~~~l~~~g~~--ip~di~v~g~d~~~~~-~~~~~ttv~~~~~~~g~~a~~~l~~~i 243 (260)
T cd06286 184 -DEVAAGIITEAKKQGIR--VPEDLAIIGFDNQPIS-ELLGITTIDQPVKELGEKAFELLLNQL 243 (260)
T ss_pred -hHHHHHHHHHHHHcCCC--CCcceEEEeecCcccc-cCCCCcccCCCHHHHHHHHHHHHHHHh
Confidence 34666777777765553 3434455555655544 2211 112245666666666655
No 151
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=80.34 E-value=4.4 Score=31.90 Aligned_cols=98 Identities=11% Similarity=0.158 Sum_probs=58.6
Q ss_pred CEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHH-------------Hhh-hcCCccEEEE
Q 027801 76 LRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ-------------QLG-KSGKYTAVLC 140 (218)
Q Consensus 76 ~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak-------------~L~-~~~~yDaVIa 140 (218)
+||+||.+.-+ +-.++.|++.+.+.|++.|+ +++++.+..- .+|..-. .+. +-...|++|.
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~---e~~~i~l~~~-~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~ 76 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGA---EVEVIDLADY-PLPCCDGDFECPCYIPDDVQELYDKLKEADGIIF 76 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTE---EEEEEECTTS-HCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCC---EEEEEecccc-chhhcccccccccCCcHHHHHHHhceecCCeEEE
Confidence 58899988875 78899999999999999987 4788887776 7774321 121 1246898876
Q ss_pred EeeeeeCC-chhHHHHHHHHHHHHHHhchhcCCceEEEEc
Q 027801 141 IGAVVRGD-TTHYDAVANSAASGVLSAGVNSGVPCIFGVL 179 (218)
Q Consensus 141 LG~VIrGe-T~H~e~Va~~vs~gLm~lsL~~~vPVifGVL 179 (218)
.-=+--|. +..++..-+-... -.-..-.++|+..-..
T Consensus 77 ~sP~y~~~~s~~lK~~lD~~~~--~~~~~~~~K~~~~i~~ 114 (152)
T PF03358_consen 77 ASPVYNGSVSGQLKNFLDRLSC--WFRRALRGKPVAIIAV 114 (152)
T ss_dssp EEEEBTTBE-HHHHHHHHTHHH--THTTTTTTSEEEEEEE
T ss_pred eecEEcCcCChhhhHHHHHhcc--ccccccCCCEEEEEEE
Confidence 54432222 2222222222221 1122335788866543
No 152
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=80.24 E-value=19 Score=29.97 Aligned_cols=100 Identities=10% Similarity=-0.076 Sum_probs=58.1
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhc--CCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKS--GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~--~~yDaVIaLG~VIrGeT~H 151 (218)
..||+++.+.-.......-.+|..+.++++|+..+...++..+-..|-. -+++.++++ ..+|||+|.+-.
T Consensus 116 ~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~------- 188 (264)
T cd06274 116 PEEVLFLGGLPELSPSRERLAGFRQALADAGLPVQPDWIYAEGYSPESGYQLMAELLARLGRLPRALFTTSYT------- 188 (264)
T ss_pred CCcEEEEeCCCcccchHHHHHHHHHHHHHcCCCCCcceeecCCCChHHHHHHHHHHHccCCCCCcEEEEcChH-------
Confidence 4589999877654455666799999999999753233333333232221 123344444 469999987543
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQ 186 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQ 186 (218)
++..+.+.+.+..++ +|==..|++.++.+.
T Consensus 189 ---~A~g~~~al~~~g~~--ip~dv~v~g~d~~~~ 218 (264)
T cd06274 189 ---LLEGVLRFLRERPGL--APSDLRIATFDDHPL 218 (264)
T ss_pred ---HHHHHHHHHHHcCCC--CCcceEEEEeCCHHH
Confidence 455666677766554 332234444455443
No 153
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=80.22 E-value=13 Score=30.17 Aligned_cols=84 Identities=18% Similarity=0.091 Sum_probs=51.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc-hHHHHHHHhhhcC-CccEEEEEeeeeeCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF-EIGVVAQQLGKSG-KYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~-ELP~aak~L~~~~-~yDaVIaLG~VIrGeT~H~ 152 (218)
..||+++...-+....+...++..+.++++| ..+.+.+++..... +.--.++.+++.+ +.|+++|.+-
T Consensus 118 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~--------- 187 (264)
T cd01537 118 HRRIALLAGPLGSSTARERVAGFKDALKEAG-PIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIFAAND--------- 187 (264)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHHHHcC-CcChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEEEcCc---------
Confidence 5689999876554566677899999999988 21223333333222 2333444555444 4899997632
Q ss_pred HHHHHHHHHHHHHhchh
Q 027801 153 DAVANSAASGVLSAGVN 169 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~ 169 (218)
..+..+.+.+.+..++
T Consensus 188 -~~a~~~~~~~~~~g~~ 203 (264)
T cd01537 188 -DMALGALRALREAGLR 203 (264)
T ss_pred -HHHHHHHHHHHHhCCC
Confidence 2455667777777765
No 154
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=80.16 E-value=8.3 Score=31.99 Aligned_cols=62 Identities=11% Similarity=0.093 Sum_probs=37.4
Q ss_pred EEEEEccc-CHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc-hHHHHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF-EIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srf-n~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~-ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
||+|.... ....-..+.++..+.++++|+. +.++...... +..-.++.+ ...++||+|..++
T Consensus 2 ig~v~~~~~~~~~~~~~~~~i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~~dgiii~~~ 65 (269)
T cd06288 2 IGLISDEIATTPFAVEIILGAQDAAREHGYL---LLVVNTGGDDELEAEAVEAL-LDHRVDGIIYATM 65 (269)
T ss_pred eEEEeCCCCCCccHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHH-HHcCCCEEEEecC
Confidence 67777776 5666677888888888888763 3333322221 112233333 3567888888774
No 155
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=80.09 E-value=16 Score=31.90 Aligned_cols=97 Identities=15% Similarity=0.014 Sum_probs=57.7
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhc-C-CccEEEEEeeeeeCCch
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKS-G-KYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~-~-~yDaVIaLG~VIrGeT~ 150 (218)
...||+++...-+......=.+|..+.|+++|+.. ..++..+...|-.+ +++.+++. . .+|||+|.+
T Consensus 177 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~~~Ai~~~~-------- 246 (327)
T TIGR02417 177 HADEFWYLGAQPELSVSRDRLAGFRQALKQATLEV--EWVYGGNYSRESGYQMFAKLCARLGRLPQALFTTS-------- 246 (327)
T ss_pred CCCeEEEEeCcccchhHHHHHHHHHHHHHHcCCCh--HhEEeCCCChHHHHHHHHHHHhcCCCCCcEEEEcC--------
Confidence 34689999765443334455689999999999852 12222233334332 34555554 3 589999843
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMD 185 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~e 185 (218)
|.++-.+.+.|.+.. .+|==..|++.+|.+
T Consensus 247 --D~~A~g~~~al~~~g---~vP~dvsvigfd~~~ 276 (327)
T TIGR02417 247 --YTLLEGVLDYMLERP---LLDSQLHLATFGDNY 276 (327)
T ss_pred --cHHHHHHHHHHHHcC---CCCCcceEEEECCch
Confidence 345666777776654 366445566666554
No 156
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=79.79 E-value=17 Score=31.15 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=68.3
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH---HHHHHHhhhc-CCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI---GVVAQQLGKS-GKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL---P~aak~L~~~-~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++....+......-.+|..+.++++|+......+ +.+-++. --.++++++. ..+|||+|.+
T Consensus 152 ~~~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-------- 221 (309)
T PRK11041 152 HKRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYI--ARGDFTFEAGAKALKQLLDLPQPPTAVFCHS-------- 221 (309)
T ss_pred CceEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHe--EeCCCCHHHHHHHHHHHHcCCCCCCEEEEcC--------
Confidence 458999987655444556789999999999975322122 2343322 2344555554 3589998854
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhC---CCCCCcHHHHHHHHHHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG---GKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag---~k~gnKG~EAA~aAleM~~ 211 (218)
+.++..+.+++.+..+ .+|==..|++.++.+.+.. .. ......-.+.+..|++|+.
T Consensus 222 --d~~a~gv~~al~~~g~--~ip~di~vvg~D~~~~~~~-~~~~~~ti~~~~~~~g~~av~~l~ 280 (309)
T PRK11041 222 --DVMALGALSQAKRMGL--RVPQDLSIIGFDDIDLAQY-CDPPLTTVAQPRYEIGREAMLLLL 280 (309)
T ss_pred --cHHHHHHHHHHHHcCC--CCCcceEEEEeCCchhhhh-cCCCceEEecCHHHHHHHHHHHHH
Confidence 2355566677766544 2453445666666543311 11 1122334555566666543
No 157
>PRK09701 D-allose transporter subunit; Provisional
Probab=79.50 E-value=31 Score=30.32 Aligned_cols=99 Identities=23% Similarity=0.228 Sum_probs=60.0
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCC-CCCCCeEEEEeCCcchHHH-HHHHhhhc-CCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYS-VKEENIDVVWVPGSFEIGV-VAQQLGKS-GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~G-v~~e~I~vv~VPGA~ELP~-aak~L~~~-~~yDaVIaLG~VIrGeT~H 151 (218)
+.||+++.+.-.......-.+|..+.|+++| +. .......+...+-.. .++.++++ .++|+|+|.+-
T Consensus 156 ~~~i~~l~g~~~~~~~~~R~~Gf~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~I~~~~d-------- 225 (311)
T PRK09701 156 GGEVAIIEGKAGNASGEARRNGATEAFKKASQIK--LVASQPADWDRIKALDVATNVLQRNPNIKAIYCAND-------- 225 (311)
T ss_pred CCEEEEEECCCCCccHHHHHHHHHHHHHhCCCcE--EEEecCCCCCHHHHHHHHHHHHHhCCCCCEEEECCc--------
Confidence 4689999776555566677799999999987 53 111112233333332 23445544 56899988653
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALN 189 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~ 189 (218)
..+-.+.++|.+..+..++ .|++.++.+.+..
T Consensus 226 --~~A~g~~~al~~~G~~~dv----~vvg~d~~~~~~~ 257 (311)
T PRK09701 226 --TMAMGVAQAVANAGKTGKV----LVVGTDGIPEARK 257 (311)
T ss_pred --chHHHHHHHHHHcCCCCCE----EEEEeCCCHHHHH
Confidence 3667777777776664222 3556666665544
No 158
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=79.39 E-value=15 Score=30.60 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=52.3
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcc--hHH-HHHHHhhhc--CCccEEEEEeeeeeCCc
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSF--EIG-VVAQQLGKS--GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~--ELP-~aak~L~~~--~~yDaVIaLG~VIrGeT 149 (218)
.||+++.+.-.......-.+|..+.++++|.. +++.+ ..+-+ +-. -.++.+++. .++|||+|-+
T Consensus 126 ~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~------- 195 (275)
T cd06317 126 GQIVVIAGQPGNGTAIERQKGFEDELAEVCPG---VEVLDTQPADWDREKAQVAMEALITKFGDDIDGVYAGD------- 195 (275)
T ss_pred ceEEEEecCCCCchHHHHHHHHHHHHHhhCCC---CEEEeccCCCCCHHHHHHHHHHHHHhCCCCccEEEECC-------
Confidence 58999976433233445568899999998753 23322 33333 322 234555544 4689999733
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceE
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
|.++..+.+.|.+..+..++.|+
T Consensus 196 ---d~~a~g~~~~l~~~g~~~dv~v~ 218 (275)
T cd06317 196 ---DNMARGALNAAKEAGLAGGIVIV 218 (275)
T ss_pred ---CcHHHHHHHHHHhcCCcCCcEEE
Confidence 33567777888888776455543
No 159
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=78.92 E-value=32 Score=28.69 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=56.3
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchHH-HHHHHhhhc-CCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIG-VVAQQLGKS-GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~ELP-~aak~L~~~-~~yDaVIaLG~VIrGeT~H 151 (218)
..||+++...=+......-.+|..+.++++ |+.. ......+...+-. -++++++++ .++|+|+|..
T Consensus 123 ~~~i~~i~~~~~~~~~~~r~~gf~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~--------- 191 (273)
T cd06310 123 KGKVAVISFVPGSSTTDQREEGFLEGLKEYPGIEI--VATQYSDSDYAKALDITEDLLTANPDLKGIFGAN--------- 191 (273)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEE--EecccCCcCHHHHHHHHHHHHHhCCCceEEEecC---------
Confidence 458999975433344556679999999998 7641 1222223333322 233444443 4689988864
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
+.++..+.+.|.+..+.-++ .|++.++.+.+
T Consensus 192 -d~~a~g~~~~l~~~g~~~di----~vig~d~~~~~ 222 (273)
T cd06310 192 -EGSAVGAARAVRQAGKAGKV----KVVGFDASPEQ 222 (273)
T ss_pred -chhHHHHHHHHHhcCCCCCe----EEEEeCCChHH
Confidence 33666777777776664233 35566665444
No 160
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=78.92 E-value=21 Score=28.26 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=55.6
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc--hHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF--EIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~--ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
..||+++...-. .......++..+.+++.|+. ...+...+..- ....+.+.+.+..+.|+|++.+.
T Consensus 124 ~~~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~--------- 191 (269)
T cd01391 124 WKRVALIYGDDG-AYGRERLEGFKAALKKAGIE--VVAIEYGDLDTEKGFQALLQLLKAAPKPDAIFACND--------- 191 (269)
T ss_pred CceEEEEecCCc-chhhHHHHHHHHHHHhcCcE--EEeccccCCCccccHHHHHHHHhcCCCCCEEEEcCc---------
Confidence 569999998776 55677889999999998853 22333333332 23344444433337899998754
Q ss_pred HHHHHHHHHHHHHhchh-cCCceE
Q 027801 153 DAVANSAASGVLSAGVN-SGVPCI 175 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~-~~vPVi 175 (218)
..+..+.+.+.+..+. .+++|+
T Consensus 192 -~~a~~~~~~~~~~g~~~~~~~ii 214 (269)
T cd01391 192 -EMAAGALKAAREAGLTPGDISII 214 (269)
T ss_pred -hHHHHHHHHHHHcCCCCCCCEEE
Confidence 2556677777777765 344443
No 161
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=78.92 E-value=2.5 Score=35.00 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=41.0
Q ss_pred CCeEEEEeC--CcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH---HHHHH----HHHHHHHhchh
Q 027801 109 ENIDVVWVP--GSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD---AVANS----AASGVLSAGVN 169 (218)
Q Consensus 109 e~I~vv~VP--GA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e---~Va~~----vs~gLm~lsL~ 169 (218)
.++.+++|| |.++.-++++-|. ++.|||++.||=+ || -||+ |.++. +.+-|-++.++
T Consensus 28 ~~vRiIrv~CsGrvn~~fvl~Al~--~GaDGV~v~GC~~-ge-CHy~~GN~ka~rR~~~lke~l~elgie 93 (132)
T COG1908 28 PNVRIIRVMCSGRVNPEFVLKALR--KGADGVLVAGCKI-GE-CHYISGNYKAKRRMELLKELLKELGIE 93 (132)
T ss_pred CceEEEEeeccCccCHHHHHHHHH--cCCCeEEEecccc-cc-eeeeccchHHHHHHHHHHHHHHHhCCC
Confidence 477888776 8999999999884 6899999999985 55 7774 34433 34444455554
No 162
>PRK09492 treR trehalose repressor; Provisional
Probab=78.81 E-value=42 Score=28.94 Aligned_cols=119 Identities=15% Similarity=0.068 Sum_probs=69.1
Q ss_pred CCCEEEEEEcc-cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVAR-FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Sr-fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
...||+++... .+......-++|..+.|+++|+.. .....+..+|-.+ +++.+++ .++|||+|..
T Consensus 174 G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~---~~~~~~~~~~~~~~~~~~~l~-~~~~ai~~~~--------- 240 (315)
T PRK09492 174 GHRHISYLGVDHSDVTTGKRRHQAYLAFCKQHKLTP---VAALGGLSMQSGYELVAKVLT-PETTALVCAT--------- 240 (315)
T ss_pred CCCeEEEEcCCcccchhHHHHHHHHHHHHHHcCCCc---eeecCCCCchHHHHHHHHHhh-cCCCEEEEcC---------
Confidence 44689999643 233334456789999999999852 2222222333222 3445554 4789998853
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhC------CCCCCcHHHHHHHHHHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG------GKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag------~k~gnKG~EAA~aAleM~~ 211 (218)
|.++..+.+.|.+..++ ++ .|++.++.+.+..-.- -.....|..|+...++++.
T Consensus 241 -D~~A~g~~~al~~~g~~-di----svig~d~~~~~~~~~p~lttv~~~~~~~g~~A~~~l~~~i~ 300 (315)
T PRK09492 241 -DTLALGASKYLQEQGRD-DI----QVAGVGNTPLLKFLFPNILSVDPGYAEAGRQAAQQLIDQLN 300 (315)
T ss_pred -cHHHHHHHHHHHHcCCC-ce----EEEeeCchhHhhhcCCCCceecccHHHHHHHHHHHHHHHhc
Confidence 45788888888888874 44 4445566544321110 1122356677766666653
No 163
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=78.76 E-value=36 Score=28.14 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=58.5
Q ss_pred CCCEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
...||+++.+.-. ......-.+|..+.++++|++.....++......+--. +++++++++++|||+|.+-
T Consensus 115 g~~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~~~d-------- 186 (268)
T cd06298 115 GHKKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEGDYTYESGYELAEELLEDGKPTAAFVTDD-------- 186 (268)
T ss_pred CCceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHhcCCCCCEEEEcCc--------
Confidence 3468999975443 33445667899999999997532222222222333322 3345555444999998643
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
..+..+.+.+.+..+. +|==..|++.++.+.+
T Consensus 187 --~~a~~~~~~l~~~g~~--vp~di~vvg~d~~~~~ 218 (268)
T cd06298 187 --ELAIGILNAAQDAGLK--VPEDFEIIGFNNTKLA 218 (268)
T ss_pred --HHHHHHHHHHHHcCCC--CccceEEEeeccHHHH
Confidence 2455666666665442 4434556666665543
No 164
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=78.14 E-value=12 Score=30.69 Aligned_cols=76 Identities=17% Similarity=0.334 Sum_probs=47.3
Q ss_pred HHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEE
Q 027801 97 ALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
..+.|++.|+ +++++++.=..+.|.- ...+||+||..|-. |.... -.-..-+++--.+.++|| +
T Consensus 13 l~~~l~~~~~---~~~v~~~~~~~~~~~~-----~~~~~d~iii~Gg~--~~~~d-----~~~~~~~i~~~~~~~~Pi-l 76 (192)
T PF00117_consen 13 LVRALRELGI---DVEVVRVDSDFEEPLE-----DLDDYDGIIISGGP--GSPYD-----IEGLIELIREARERKIPI-L 76 (192)
T ss_dssp HHHHHHHTTE---EEEEEETTGGHHHHHH-----HTTTSSEEEEECES--SSTTS-----HHHHHHHHHHHHHTTSEE-E
T ss_pred HHHHHHHCCC---eEEEEECCCchhhhhh-----hhcCCCEEEECCcC--Ccccc-----ccccccccccccccceEE-E
Confidence 3456677776 5889988866666633 24689999999987 44444 233333444445579996 6
Q ss_pred EEcCCCCHHHHHHhh
Q 027801 177 GVLTCDNMDQALNRA 191 (218)
Q Consensus 177 GVLT~~n~eQA~~Ra 191 (218)
||=- =-|.+.++
T Consensus 77 GIC~---G~Q~la~~ 88 (192)
T PF00117_consen 77 GICL---GHQILAHA 88 (192)
T ss_dssp EETH---HHHHHHHH
T ss_pred EEee---hhhhhHHh
Confidence 6632 24554444
No 165
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.84 E-value=36 Score=28.58 Aligned_cols=89 Identities=17% Similarity=0.099 Sum_probs=54.6
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH---HHHHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI---GVVAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL---P~aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
...||+++.+.-+ .....-.+|..+.|+++|+. .+.+ +.+.+.. .-.++.++++ .++|+|+|.+
T Consensus 126 g~~~i~~~~g~~~-~~~~~R~~gf~~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~------- 193 (274)
T cd06311 126 GNGNIVVLRGIPT-PIDNERVDAFDAAIAKYPIK--ILDR--QYANWNRDDAFSVMQDLLTKFPKIDAVWAHD------- 193 (274)
T ss_pred CCCeEEEEECCCC-cchhHHHHHHHHHHhhCCcE--EEec--cCCCCcHHHHHHHHHHHHHhCCCcCEEEECC-------
Confidence 3468999976555 44455678999999998853 1222 3343332 2334455543 5689998855
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
|..+..+.+++.+..+.-+++ +.|.
T Consensus 194 ---d~~a~g~~~al~~~g~~~~~~-ivg~ 218 (274)
T cd06311 194 ---DDMAVGVLAAIKQAGRTDIKF-VVGG 218 (274)
T ss_pred ---CcHHHHHHHHHHHcCCCCCce-EEEe
Confidence 336777788888877653333 4443
No 166
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=77.58 E-value=9.3 Score=28.74 Aligned_cols=81 Identities=22% Similarity=0.226 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEEe--CCcchHHH-HHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchh
Q 027801 93 LLEGALETFKKYSVKEENIDVVWV--PGSFEIGV-VAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 93 Ll~gA~~~L~~~Gv~~e~I~vv~V--PGA~ELP~-aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~ 169 (218)
+...-.+.++++|.. .++. +|.++=.- -+... -++.|.||++ -++|++.++.-+.+..-+
T Consensus 11 ~~~~~~~~~~~~G~~-----~~~hg~~~~~~~~~~~l~~~--i~~aD~VIv~----------t~~vsH~~~~~vk~~akk 73 (97)
T PF10087_consen 11 RERRYKRILEKYGGK-----LIHHGRDGGDEKKASRLPSK--IKKADLVIVF----------TDYVSHNAMWKVKKAAKK 73 (97)
T ss_pred cHHHHHHHHHHcCCE-----EEEEecCCCCccchhHHHHh--cCCCCEEEEE----------eCCcChHHHHHHHHHHHH
Confidence 445667788888874 4444 44444322 12222 2578999976 357889999999999999
Q ss_pred cCCceEEEE-cCCCCHHHHHHh
Q 027801 170 SGVPCIFGV-LTCDNMDQALNR 190 (218)
Q Consensus 170 ~~vPVifGV-LT~~n~eQA~~R 190 (218)
+++|+++-= -...+.++++++
T Consensus 74 ~~ip~~~~~~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 74 YGIPIIYSRSRGVSSLERALER 95 (97)
T ss_pred cCCcEEEECCCCHHHHHHHHHh
Confidence 999999863 222345555554
No 167
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=77.45 E-value=35 Score=29.60 Aligned_cols=95 Identities=18% Similarity=0.104 Sum_probs=57.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHH---HHHHHhhh-cCCccEEEEEeeeeeCCc
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIG---VVAQQLGK-SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP---~aak~L~~-~~~yDaVIaLG~VIrGeT 149 (218)
..||+++....+......=.+|..+.|+++|.. +++++.+ .+-++.. -+++.+++ ..+.|+|+|.+
T Consensus 123 ~~~I~~l~g~~~~~~~~~R~~Gf~~~l~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~------- 193 (298)
T cd06302 123 KGEYAIFVGSLTATNQNAWIDAAKAYQKEKYYP--MLELVDRQYGDDDADKSYQTAQELLKAYPDLKGIIGPT------- 193 (298)
T ss_pred CCEEEEEeCCCCCcchHHHHHHHHHHHhhcCCC--CeEEeCcccCCCCHHHHHHHHHHHHHhCCCceEEEECC-------
Confidence 358999987655433333347999999999843 3443222 4444432 23444444 34689998853
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMD 185 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~e 185 (218)
|..+..+.++|.+..+.-++. |++.++.+
T Consensus 194 ---D~~A~g~~~al~~~g~~~dv~----vvG~D~~~ 222 (298)
T cd06302 194 ---SVGIPGAARAVEEAGLKGKVA----VTGLGLPN 222 (298)
T ss_pred ---CcchhHHHHHHHhcCCCCCEE----EEEeCCCH
Confidence 357778889999888863332 34445543
No 168
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.37 E-value=44 Score=28.39 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=59.3
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEE-EeCCcchHHH---HHHHhhh-cCCccEEEEEeeeeeCC
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV-WVPGSFEIGV---VAQQLGK-SGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv-~VPGA~ELP~---aak~L~~-~~~yDaVIaLG~VIrGe 148 (218)
...||+++...-+......=++|..+.+++++ . +++. ..++.++..- +++++++ ..++|||+|..-.
T Consensus 122 g~~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~---- 193 (272)
T cd06313 122 GKGKIAMLQGALGHTGAQGRAQGFNDVIKKYP-D---IEVVDEQPANWDVSKAARIWETWLTKYPQLDGAFCHNDS---- 193 (272)
T ss_pred CCceEEEEECCCCCcchhHHHHHHHHHHHhCC-C---CEEEeccCCCCCHHHHHHHHHHHHHhCCCCCEEEECCCc----
Confidence 34599999876554444455789999999886 1 2222 2456666432 2333443 3568999986533
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~ 188 (218)
++..+.++|.+..+ .++. |++-++..++.
T Consensus 194 ------~a~g~~~al~~~g~-~di~----vvgfd~~~~~~ 222 (272)
T cd06313 194 ------MALAAYQIMKAAGR-TKIV----IGGVDGDPPAI 222 (272)
T ss_pred ------HHHHHHHHHHHcCC-CceE----EEeecCCHHHH
Confidence 67778888888777 4433 33556555543
No 169
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=77.23 E-value=7.4 Score=35.72 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=40.7
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHH--HHHHHhhhcCCccEEEEEee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIG--VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP--~aak~L~~~~~yDaVIaLG~ 143 (218)
|+.||..+.-. ...+.+...+.|++.|+. +.++. +++--..- --+-..++..++|.||++|=
T Consensus 23 r~lvVt~~~~~--~~~~~~~v~~~L~~~~i~---~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 87 (366)
T PF00465_consen 23 RVLVVTDPSLS--KSGLVDRVLDALEEAGIE---VQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGG 87 (366)
T ss_dssp EEEEEEEHHHH--HHTHHHHHHHHHHHTTCE---EEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEES
T ss_pred CEEEEECchHH--hCccHHHHHHHHhhCceE---EEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999988322 223778888899999985 44554 44433332 22333456789999999994
No 170
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=76.98 E-value=29 Score=28.57 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=56.2
Q ss_pred CCEEEEEEccc-CHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc-hHHHHHHHhhhc-CCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF-EIGVVAQQLGKS-GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srf-n~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~-ELP~aak~L~~~-~~yDaVIaLG~VIrGeT~H 151 (218)
..||+++.++- +......-.+|..+.|+++|+... .++..+-.. +..-.+..++++ .++|+|+|.+-
T Consensus 116 ~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-------- 185 (266)
T cd06282 116 HRRIAMLAGRLAASDRARQRYAGYRAAMRAAGLAPL--PPVEIPFNTAALPSALLALLTAHPAPTAIFCSND-------- 185 (266)
T ss_pred cccEEEeccccccCchHHHHHHHHHHHHHHcCCCCC--ccccCCCcHHHHHHHHHHHhcCCCCCCEEEECCc--------
Confidence 45899997653 333455667999999999997522 233333222 122233444444 46899988542
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.++..+.+++.+..+ .+|==..|++.++...+
T Consensus 186 --~~a~g~~~al~~~g~--~~p~di~v~g~d~~~~~ 217 (266)
T cd06282 186 --LLALAVIRALRRLGL--RVPDDLSVVGFDGIAIG 217 (266)
T ss_pred --HHHHHHHHHHHHcCC--CCCCceEEEeecchHHH
Confidence 355566666666554 34433445555655443
No 171
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=76.79 E-value=12 Score=34.09 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=44.9
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHH--HhhhcCCccEEEEEeeeeeCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ--QLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak--~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
+.|+.||....-.. .+++...+.|++.|+. +....++|--....+-+ ..++..++|.||++| |++..+
T Consensus 22 ~~r~livt~~~~~~---~~~~~v~~~L~~~~i~---~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG----GGS~iD 91 (351)
T cd08170 22 GKRALIIADEFVLD---LVGAKIEESLAAAGID---ARFEVFGGECTRAEIERLAEIARDNGADVVIGIG----GGKTLD 91 (351)
T ss_pred CCeEEEEECHHHHH---HHHHHHHHHHHhCCCe---EEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEec----CchhhH
Confidence 36888887654433 6778888899988874 33445666433443322 234668999999999 666655
No 172
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=76.70 E-value=35 Score=28.47 Aligned_cols=122 Identities=15% Similarity=0.034 Sum_probs=65.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhc--CCccEEEEEeeeeeCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKS--GKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~--~~yDaVIaLG~VIrGeT~H~ 152 (218)
..||+++.+.-.......-.+|..+.++++|+......++ .+.-.---.++.+++. ..+|||+|.+-
T Consensus 118 ~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ai~~~~d--------- 186 (268)
T cd06277 118 HRKIGFVGDPLYSPSFEERYEGYKKALLDHGIPFNEDYDI--TEKEEDEEDIGKFIDELKPLPTAFFCSND--------- 186 (268)
T ss_pred CCcEEEECCCCCCcchHHHHHHHHHHHHHcCCCCCcceEE--EcchhHHHHHHHHHhcCCCCCCEEEECCc---------
Confidence 4589999765432333445589999999999864322222 2221111233444433 34899988764
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhC------CCCCCcHHHHHHHHHHHH
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG------GKSGNKGAEAALTAIEMA 210 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag------~k~gnKG~EAA~aAleM~ 210 (218)
.++..+.+.+.+..++ +|==-+|++.++.+.+..... -.....|.+|++.+++++
T Consensus 187 -~~a~g~~~a~~~~g~~--~p~di~vig~d~~~~~~~~~~~i~tv~~~~~~~g~~a~~~l~~~l 247 (268)
T cd06277 187 -GVAFLLIKVLKEMGIR--VPEDVSVIGFDDIEYATIFTPPLTTVRVDKEEMGKLAVKRLLEKL 247 (268)
T ss_pred -HHHHHHHHHHHHcCCC--CCCcceEEeecCchHHHhcCCCceEEecCHHHHHHHHHHHHHHHh
Confidence 3566677777776553 343334566666555432211 112233555555555554
No 173
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=76.58 E-value=40 Score=27.89 Aligned_cols=103 Identities=22% Similarity=0.168 Sum_probs=59.3
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhc-CCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKS-GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~-~~yDaVIaLG~VIrGeT~H 151 (218)
...||+++...-+....+.-.+|..+.++++|++.....++..+...+-. -.++.++++ .++|||+|..-.
T Consensus 115 g~~~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~------- 187 (269)
T cd06288 115 GHRRIAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPTAIFCGNDR------- 187 (269)
T ss_pred CCceEEEEeCCccchhHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCCEEEEeCcH-------
Confidence 34589999766554455666799999999998753222233333332211 233455544 469999987543
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~ 188 (218)
++..+.+.|.+..++ +|==..|++.++.+.+.
T Consensus 188 ---~a~~~~~~l~~~g~~--vp~di~v~g~d~~~~~~ 219 (269)
T cd06288 188 ---MAMGAYQALLERGLR--IPQDVSVVGFDNQEIIA 219 (269)
T ss_pred ---HHHHHHHHHHHcCCC--CcccceEEeeCCchhhh
Confidence 566677777766553 23112344445544443
No 174
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=76.55 E-value=11 Score=34.96 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=42.2
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc--chHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS--FEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA--~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
+.|+.||..+.-. .++...+.|++.|++ +.++.+++- +|.=.-+-.+++..++|.||++| |.+..+
T Consensus 22 ~~r~livtd~~~~-----~~~~v~~~L~~~g~~---~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiG----GGS~~D 89 (374)
T cd08183 22 GRRVLLVTGASSL-----RAAWLIEALRAAGIE---VTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIG----GGSVID 89 (374)
T ss_pred CCcEEEEECCchH-----HHHHHHHHHHHcCCe---EEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEec----CchHHH
Confidence 3688899876543 566777888888874 555555441 12111222234668999999999 666665
No 175
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=76.48 E-value=51 Score=28.66 Aligned_cols=121 Identities=15% Similarity=0.046 Sum_probs=70.3
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhc-CCccEEEEEeeeeeCCchh
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~-~~yDaVIaLG~VIrGeT~H 151 (218)
.+|+++...........-.+|.++.++++| .. .+.. .+++.++.-- +++.++++ .++|||+|.
T Consensus 143 ~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~g-~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~---------- 209 (305)
T cd06324 143 IDLLAISGDPTTPAAILREAGLRRALAEHP-DV-RLRQ-VVYAGWSEDEAYEQAENLLKRYPDVRLIWAA---------- 209 (305)
T ss_pred eeEEEEeCCCCChHHHHHHHHHHHHHHHCC-Cc-eEee-eecCCCCHHHHHHHHHHHHHHCCCccEEEEC----------
Confidence 468888765554555666789999999998 11 1211 2445554322 33445443 468998874
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh--C------CCCCCcHHHHHHHHHHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA--G------GKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra--g------~k~gnKG~EAA~aAleM~~ 211 (218)
.|.++..+.++|.+..+. +|==..|++-++..++++.. + .....-|..|+...+++++
T Consensus 210 ~d~~A~g~~~al~~~g~~--vp~di~vig~D~~~~~~~~~~~~~lttv~~~~~~~g~~a~~~l~~~i~ 275 (305)
T cd06324 210 NDQMAFGALRAAKEAGRK--PGRDVLFGGVNWSPEALRAIKDGRLSVSAGGHFTEGGWALVLLYDYAH 275 (305)
T ss_pred CchHHHHHHHHHHHcCCC--cCCCEEEEecCCCHHHHHHHHcCceEEEecCCcccHHHHHHHHHHHHc
Confidence 344677777888776664 23113455666555543321 1 1234567777777776653
No 176
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=76.48 E-value=25 Score=28.72 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=51.9
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCC-CCCCCeEEEEeCCcch----HHHHHHHhhhc-CCccEEEEEeeeeeC
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYS-VKEENIDVVWVPGSFE----IGVVAQQLGKS-GKYTAVLCIGAVVRG 147 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~G-v~~e~I~vv~VPGA~E----LP~aak~L~~~-~~yDaVIaLG~VIrG 147 (218)
...||+++...-+......-.++..+.++++| +. +..+ .++.+. .+.+ +++++. .++|+|+|..-
T Consensus 120 g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~d---- 190 (267)
T cd01536 120 GKGKVAIIEGPPGSSNAQERVKGFRDALKEYPDIE---IVAV-QDGNWDREKALQAM-EDLLQANPDIDAIFAAND---- 190 (267)
T ss_pred CCceEEEEEcccccchHHHHHHHHHHHHHhCCCcE---EEEE-ecCCCcHHHHHHHH-HHHHHhCCCccEEEEecC----
Confidence 45799999875544466677899999999985 43 2222 233332 2333 444443 45888887442
Q ss_pred CchhHHHHHHHHHHHHHHhchhcCCce
Q 027801 148 DTTHYDAVANSAASGVLSAGVNSGVPC 174 (218)
Q Consensus 148 eT~H~e~Va~~vs~gLm~lsL~~~vPV 174 (218)
..+..+.+.+.+..+..+++|
T Consensus 191 ------~~a~~~~~~l~~~g~~~~i~i 211 (267)
T cd01536 191 ------SMALGAVAALKAAGRKGDVKI 211 (267)
T ss_pred ------CchHHHHHHHHhcCCCCCceE
Confidence 245566677777666534444
No 177
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=76.16 E-value=24 Score=29.65 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=46.7
Q ss_pred HHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceE
Q 027801 96 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
...+..+++|+ .++-|||.= .+++.++..++||||+.+|. ....+|+.++.- .++|+.
T Consensus 77 ~l~~lae~~g~-----~v~i~~Ggt----~ar~~ik~~~p~~iigVAC~------------~dL~~g~~~~~~-~~ip~~ 134 (158)
T PF01976_consen 77 DLKKLAEKYGY-----KVYIATGGT----LARKIIKEYRPKAIIGVACE------------RDLISGIQDLKP-LGIPVQ 134 (158)
T ss_pred HHHHHHHHcCC-----EEEEEcChH----HHHHHHHHhCCCEEEEEech------------HHHHHHHHHHhh-cCCCee
Confidence 34556677776 589999974 44666677799999999996 457788988877 589986
Q ss_pred EEEcC
Q 027801 176 FGVLT 180 (218)
Q Consensus 176 fGVLT 180 (218)
--++.
T Consensus 135 gV~l~ 139 (158)
T PF01976_consen 135 GVLLD 139 (158)
T ss_pred EEEeC
Confidence 55443
No 178
>PRK09526 lacI lac repressor; Reviewed
Probab=76.13 E-value=14 Score=32.27 Aligned_cols=65 Identities=9% Similarity=0.087 Sum_probs=44.5
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc-c-hHHHHHHHhhhcCCccEEEEEe
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS-F-EIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA-~-ELP~aak~L~~~~~yDaVIaLG 142 (218)
+...||+|...++...-..|+++..++++++|+. +.+...... . +.--.++.| ...++||+|..+
T Consensus 62 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~---~~i~~~~~~~~~~~~~~l~~l-~~~~vdGiii~~ 128 (342)
T PRK09526 62 QSLTIGLATTSLALHAPSQIAAAIKSRADQLGYS---VVISMVERSGVEACQAAVNEL-LAQRVSGVIINV 128 (342)
T ss_pred CCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHHH-HhcCCCEEEEec
Confidence 4457999998877666678999999999999974 555544321 1 122334554 457899999864
No 179
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=76.03 E-value=24 Score=33.31 Aligned_cols=89 Identities=22% Similarity=0.327 Sum_probs=59.3
Q ss_pred CCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC--Ccch-HHHHHHHhhhcCCccEEEEEeeeeeCC
Q 027801 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP--GSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 72 ~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP--GA~E-LP~aak~L~~~~~yDaVIaLG~VIrGe 148 (218)
.++..+|+|...=-|.-+. +-.+|++++|++.|.. |+++..-- |..- ++.+++.+ ..++.|-||+++.-
T Consensus 27 ~~~~~~VaI~~~veHpaLd-~~~~G~~~aLk~~G~~--n~~i~~~na~~~~~~a~~iarql-~~~~~dviv~i~tp---- 98 (322)
T COG2984 27 AADQITVAITQFVEHPALD-AAREGVKEALKDAGYK--NVKIDYQNAQGDLGTAAQIARQL-VGDKPDVIVAIATP---- 98 (322)
T ss_pred cccceeEEEEEeecchhHH-HHHHHHHHHHHhcCcc--CeEEEeecCCCChHHHHHHHHHh-hcCCCcEEEecCCH----
Confidence 3566789999888887765 5669999999999995 45544433 3333 33344444 45667999988764
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcC
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLT 180 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT 180 (218)
++++++.-.. ++||+|--.|
T Consensus 99 ----------~Aq~~~s~~~--~iPVV~aavt 118 (322)
T COG2984 99 ----------AAQALVSATK--TIPVVFAAVT 118 (322)
T ss_pred ----------HHHHHHHhcC--CCCEEEEccC
Confidence 3444444433 3999998776
No 180
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.90 E-value=5 Score=35.54 Aligned_cols=93 Identities=11% Similarity=0.030 Sum_probs=60.9
Q ss_pred HHHHHHHHCCCCCCCeEEE-EeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHH-------HHHHHHHHHHHhc
Q 027801 96 GALETFKKYSVKEENIDVV-WVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDA-------VANSAASGVLSAG 167 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~vv-~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~-------Va~~vs~gLm~ls 167 (218)
...+.|.+.|+. .+++- +-|+++|.=-.+.+-...+..|.+|..|.|+.-++.+.-. |+-.....+.+..
T Consensus 31 ~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~~~~~v~~~~ 108 (222)
T PRK07114 31 KVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPLFNPDIAKVC 108 (222)
T ss_pred HHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHHH
Confidence 445667777886 45543 3678887332222111222347899999997544333211 2223567899999
Q ss_pred hhcCCceEEEEcCCCCHHHHHHh
Q 027801 168 VNSGVPCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 168 L~~~vPVifGVLT~~n~eQA~~R 190 (218)
.++++|++-|++|+....+|++.
T Consensus 109 ~~~~i~~iPG~~TpsEi~~A~~~ 131 (222)
T PRK07114 109 NRRKVPYSPGCGSLSEIGYAEEL 131 (222)
T ss_pred HHcCCCEeCCCCCHHHHHHHHHC
Confidence 99999999999999888998765
No 181
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=75.22 E-value=13 Score=29.79 Aligned_cols=63 Identities=21% Similarity=0.330 Sum_probs=40.7
Q ss_pred CCCCCCeEEEEeC--CcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH---HHHHHHHHHHHHHhchhcCC
Q 027801 105 SVKEENIDVVWVP--GSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY---DAVANSAASGVLSAGVNSGV 172 (218)
Q Consensus 105 Gv~~e~I~vv~VP--GA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~---e~Va~~vs~gLm~lsL~~~v 172 (218)
..+ .++.+++|| |..+..++.+-|. .+.|||+.+||-- |+ -|| .+.+..-...+.++=.+.|+
T Consensus 24 ~~p-~~vriIrvpC~Grv~~~~il~Af~--~GADGV~V~gC~~-g~-Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi 91 (124)
T PF02662_consen 24 QYP-PNVRIIRVPCSGRVDPEFILRAFE--KGADGVLVAGCHP-GD-CHYREGNYRAEKRVERLKKLLEELGI 91 (124)
T ss_pred CCC-CCeEEEEccCCCccCHHHHHHHHH--cCCCEEEEeCCCC-CC-CCcchhhHHHHHHHHHHHHHHHHcCC
Confidence 343 579999998 7788888888774 4699999999973 34 566 23344434444444334443
No 182
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=75.18 E-value=21 Score=30.96 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=56.9
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhc-CCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~-~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++...-+......-.+|..+.|+++|.. +..+ +.+.|...- +++.+++. .++|||+|.
T Consensus 179 ~r~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~---~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~--------- 245 (328)
T PRK11303 179 AESILLLGALPELSVSFEREQGFRQALKDDPRE---VHYL-YANSFEREAGAQLFEKWLETHPMPDALFTT--------- 245 (328)
T ss_pred CCeEEEEeCccccccHHHHHHHHHHHHHHcCCC---ceEE-EeCCCChHHHHHHHHHHHcCCCCCCEEEEc---------
Confidence 568999976544333445568999999999984 2222 344443221 34455544 469999994
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMD 185 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~e 185 (218)
.|.++..+.++|.+..+ .+|==..|++-++.+
T Consensus 246 -~d~~A~g~~~al~~~g~--~vP~disv~gfd~~~ 277 (328)
T PRK11303 246 -SYTLLQGVLDVLLERPG--ELPSDLAIATFGDNE 277 (328)
T ss_pred -CcHHHHHHHHHHHHcCC--CCCCceEEEEeCChH
Confidence 34566677777776655 345333444445543
No 183
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=74.41 E-value=42 Score=29.51 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=53.0
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhh--hcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLG--KSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~--~~~~yDaVIaLG~ 143 (218)
+.+|+++...-+......|.+++.++.++.|+ ...++..++-...+--++.+- -..++|||+.-..
T Consensus 33 ~~~i~~~~~~~~~~f~~~~~~g~~~~a~~~g~---~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~ 100 (322)
T COG1879 33 GKTIGVVVPTLGNPFFQAVRKGAEAAAKKLGV---VVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPV 100 (322)
T ss_pred CceEEEEeccCCChHHHHHHHHHHHHHHHcCC---cEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCC
Confidence 37899999999999999999999999999997 467777888887775444432 3578999987654
No 184
>PRK11914 diacylglycerol kinase; Reviewed
Probab=73.92 E-value=35 Score=30.43 Aligned_cols=89 Identities=10% Similarity=0.154 Sum_probs=53.4
Q ss_pred CCCCEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 73 NEGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 73 ~~~~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
.+-.|+.||.-.-- ..-..+..+...+.|++.|.+ ++++..-..-+....+++++ ...+|.||+.|= -.|.|
T Consensus 6 ~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~---~~~~~t~~~~~~~~~a~~~~-~~~~d~vvv~GG---DGTi~ 78 (306)
T PRK11914 6 HEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVD---VVEIVGTDAHDARHLVAAAL-AKGTDALVVVGG---DGVIS 78 (306)
T ss_pred CCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCe---EEEEEeCCHHHHHHHHHHHH-hcCCCEEEEECC---chHHH
Confidence 34467777764221 111234555667788888873 55555555557777777765 466899998884 23555
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcC
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLT 180 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT 180 (218)
++..+|+ ..++| +|||-
T Consensus 79 ------evv~~l~----~~~~~--lgiiP 95 (306)
T PRK11914 79 ------NALQVLA----GTDIP--LGIIP 95 (306)
T ss_pred ------HHhHHhc----cCCCc--EEEEe
Confidence 4455664 34555 66664
No 185
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=73.82 E-value=23 Score=30.22 Aligned_cols=30 Identities=3% Similarity=0.000 Sum_probs=18.6
Q ss_pred EEEEEEcccC-HHHHHHHHHHHHHHHHHCCC
Q 027801 77 RFALVVARFN-ELVTKLLLEGALETFKKYSV 106 (218)
Q Consensus 77 RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv 106 (218)
||++|....+ ...-..+++++.+.++++|+
T Consensus 1 ~Igvi~~~~~~~~~~~~~~~~i~~~~~~~g~ 31 (280)
T cd06303 1 KIAVIYPGQQISDYWVRNIASFTARLEELNI 31 (280)
T ss_pred CeeEEecCccHHHHHHHHHHHHHHHHHHcCC
Confidence 4666666642 33445666777777777775
No 186
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=73.71 E-value=15 Score=32.03 Aligned_cols=29 Identities=3% Similarity=-0.079 Sum_probs=16.1
Q ss_pred EEEEEccc-CHHHHHHHHHHHHHHHHHCCC
Q 027801 78 FALVVARF-NELVTKLLLEGALETFKKYSV 106 (218)
Q Consensus 78 IaIV~Srf-n~~It~~Ll~gA~~~L~~~Gv 106 (218)
||++...+ ....-..+++++.++++++|+
T Consensus 2 Igvi~~~~~~~~~~~~~~~gi~~~~~~~g~ 31 (305)
T cd06324 2 VVFLNPGKSDEPFWNSVARFMQAAADDLGI 31 (305)
T ss_pred eEEecCCCCCCcHHHHHHHHHHHHHHhcCC
Confidence 45555555 444445556666666666554
No 187
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=73.69 E-value=29 Score=28.69 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=55.6
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
...||+++...-+........+|..+.++++|+... .. +.+.+..-- .++.++++.++|||+|..
T Consensus 115 g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~--~~--~~~~~~~~~~~~~~~~~l~~~~~~ai~~~~-------- 182 (264)
T cd01574 115 GHRTIAHVAGPEEWLSARARLAGWRAALEAAGIAPP--PV--LEGDWSAESGYRAGRELLREGDPTAVFAAN-------- 182 (264)
T ss_pred CCCEEEEEecCCccchHHHHHHHHHHHHHHCCCCcc--ee--eecCCCHHHHHHHHHHHHhCCCCcEEEEcC--------
Confidence 456899997765544556677899999998887521 22 223333222 223344455589988843
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
+.++..+.+.+.+..++ +|==..|++.++.+.+
T Consensus 183 --d~~a~g~~~~~~~~g~~--ip~~i~ii~~d~~~~~ 215 (264)
T cd01574 183 --DQMALGVLRALHELGLR--VPDDVSVVGFDDIPES 215 (264)
T ss_pred --cHHHHHHHHHHHHcCCC--CccceEEecccCchHH
Confidence 23444555555544432 3323466666665544
No 188
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=73.67 E-value=50 Score=27.29 Aligned_cols=126 Identities=19% Similarity=0.126 Sum_probs=68.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhh-cCCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGK-SGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~-~~~yDaVIaLG~VIrGeT~H 151 (218)
...||+++.+.-...-...-.+|..+.++++|+......+...+-.++=. -.++++++ ..++|+|+|.
T Consensus 117 g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~---------- 186 (270)
T cd01545 117 GHRRIAFIAGPPDHRASAERLEGYRDALAEAGLPLDPELVAQGDFTFESGLEAAEALLALPDRPTAIFAS---------- 186 (270)
T ss_pred CCceEEEEeCCCCchhHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhhHHHHHHHHHhCCCCCCEEEEc----------
Confidence 35689999754443334455689999999998753222233333233211 12344544 3568998863
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHH-h-----hCCCCCCcHHHHHHHHHHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALN-R-----AGGKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~-R-----ag~k~gnKG~EAA~aAleM~~ 211 (218)
.+.++..+.+.+.+..++ +|==..|++.++.+.+.. + ..-....-|.+|+..++++++
T Consensus 187 ~d~~a~~~~~~~~~~g~~--~p~~i~vig~d~~~~~~~~~~~~~ti~~~~~~~g~~a~~~l~~~l~ 250 (270)
T cd01545 187 NDDMAAGVLAVAHRRGLR--VPDDLSVVGFDDTPIATTIWPPLTTVRQPIAEMARAAAELLIARLR 250 (270)
T ss_pred CcHHHHHHHHHHHHcCCC--CCCceEEEEECChhHHhcCCCCceEeeCcHHHHHHHHHHHHHHHhc
Confidence 234667777777766553 343344555555543321 1 111122346666666666654
No 189
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=73.57 E-value=6 Score=35.66 Aligned_cols=99 Identities=21% Similarity=0.290 Sum_probs=58.6
Q ss_pred CCCEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCC-------CeEEEEeCCc---ch--HHHHHHHhhhcCCccEEEE
Q 027801 74 EGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEE-------NIDVVWVPGS---FE--IGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 74 ~~~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e-------~I~vv~VPGA---~E--LP~aak~L~~~~~yDaVIa 140 (218)
-+.||+|+.+..- +.+.+.+ +..+|++.. ++++..+-|. +| +=-.+++.++..+-|+ ||
T Consensus 108 vgrrfsViTtt~rs~~il~~l-------v~~~g~s~~~~~vrstdl~vL~l~~~~~~~~~~l~~~~~~a~~edgAea-Ii 179 (230)
T COG4126 108 VGRRFSVITTTERSRPILEEL-------VRSYGLSRHCRSVRSTDLPVLALEGPPEEAEALLVIEAAEALKEDGAEA-II 179 (230)
T ss_pred hcceEEEEecCcccHHHHHHH-------HHhcCccccccceeeCCCCcccccCChHHHHHHHHHHHHHHhhhcCCCE-EE
Confidence 4679999998765 3333333 344555432 3445555551 11 1112233345566665 67
Q ss_pred EeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCC
Q 027801 141 IGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGG 193 (218)
Q Consensus 141 LG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~ 193 (218)
|||= | -.+ ---+|+-..|+|||.||.-......++-+.+.
T Consensus 180 LGCA--G-ms~----------la~~Lq~~~gvPVIDgv~Aav~~a~~L~~~~~ 219 (230)
T COG4126 180 LGCA--G-MSD----------LADQLQKAFGVPVIDGVAAAVKLAEGLLGMGL 219 (230)
T ss_pred EcCc--c-HHH----------HHHHHHHHhCCCcccchHHHHHHHHHHHhhch
Confidence 9994 2 222 13467778899999999988777777777663
No 190
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=73.56 E-value=26 Score=29.80 Aligned_cols=101 Identities=22% Similarity=0.279 Sum_probs=60.0
Q ss_pred CCCEEEEEEccc-----------------CHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhc-
Q 027801 74 EGLRFALVVARF-----------------NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKS- 132 (218)
Q Consensus 74 ~~~RIaIV~Srf-----------------n~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~- 132 (218)
...||+++..+. +......-.+|..+.++++|+......++.+ +.+...- .+++++++
T Consensus 115 g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 193 (283)
T cd06279 115 GHRRIGILGLRLGRDRNTGRVTDERLASATFSVARERLEGYLEALEEAGIDISDVPIWEI-PENDRASGEEAARELLDAS 193 (283)
T ss_pred CCCcEEEecCcccccccccccccccccccccccHHHHHHHHHHHHHHcCCCCChheEEec-CCCchHHHHHHHHHHHcCC
Confidence 345899997653 2234566789999999999975333333332 3333332 33444443
Q ss_pred CCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 133 GKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 133 ~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.++|||+|-+- .++..+.+++.+..+ .+|==..|++.++.+.+
T Consensus 194 ~~~~ai~~~~d----------~~a~gv~~al~~~g~--~ip~di~vig~d~~~~~ 236 (283)
T cd06279 194 PRPTAILCMSD----------VLALGALQVARELGL--RVPEDLSVVGFDGIPEA 236 (283)
T ss_pred CCCcEEEECCc----------HHHHHHHHHHHHcCC--CCCCceEEeeeCCCcce
Confidence 46899988653 366677777777655 34533445555555444
No 191
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=73.44 E-value=53 Score=27.46 Aligned_cols=82 Identities=17% Similarity=0.063 Sum_probs=52.1
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchH---HHHHHHhhh-cCCccEEEEEeeeeeCC
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEI---GVVAQQLGK-SGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~EL---P~aak~L~~-~~~yDaVIaLG~VIrGe 148 (218)
...||+++.+.-.......-++|..+.++++ |+. +.. .+-+.++. -..++.+++ ..++|||+|.+
T Consensus 121 g~~~i~~l~~~~~~~~~~~R~~g~~~~l~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~aI~~~~------ 190 (270)
T cd06308 121 GKGNILEIWGLEGSSPAIERHDGFKEALSKYPKIK---IVA-QQDGDWLKEKAEEKMEELLQANPDIDLVYAHN------ 190 (270)
T ss_pred CCceEEEEECCCCCchHHHHHHHHHHHHHHCCCCE---EEE-ecCCCccHHHHHHHHHHHHHhCCCCcEEEeCC------
Confidence 3569999976444444445579999999998 653 211 12233432 134455554 45699998844
Q ss_pred chhHHHHHHHHHHHHHHhchh
Q 027801 149 TTHYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~ 169 (218)
|.++..+.+++.+..++
T Consensus 191 ----d~~a~g~~~al~~~g~~ 207 (270)
T cd06308 191 ----DPMALGAYLAAKRAGRE 207 (270)
T ss_pred ----cHHHHHHHHHHHHcCCC
Confidence 45777788888887776
No 192
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=72.94 E-value=33 Score=28.71 Aligned_cols=84 Identities=18% Similarity=0.060 Sum_probs=49.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH-HHHHHHhhhc-CCccEEEEEeeeeeCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI-GVVAQQLGKS-GKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL-P~aak~L~~~-~~yDaVIaLG~VIrGeT~H~ 152 (218)
..+|+++...-.......-.+|..+.++++|+......+..-+...+- --.++.++++ ..+|||+|.+..
T Consensus 125 ~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~-------- 196 (275)
T cd06295 125 RRRIAFLGGPQDMPEGEERLEGYREALAEAGLPLDPRLVAPGDFTEESGRAAMRALLERGPDFDAVFAASDL-------- 196 (275)
T ss_pred CCeEEEEcCCCCcchhHHHHHHHHHHHHHcCCCCChhhEEeccCCHHHHHHHHHHHHhCCCCCCEEEECCcH--------
Confidence 458999876544344556679999999999865333333333333332 1223444443 468999887543
Q ss_pred HHHHHHHHHHHHHhch
Q 027801 153 DAVANSAASGVLSAGV 168 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL 168 (218)
++..+.+.+.+..+
T Consensus 197 --~a~g~~~~l~~~g~ 210 (275)
T cd06295 197 --MALGALRALREAGR 210 (275)
T ss_pred --HHHHHHHHHHHhCC
Confidence 44556666665555
No 193
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=72.89 E-value=50 Score=27.61 Aligned_cols=99 Identities=19% Similarity=0.027 Sum_probs=57.6
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeE--EEEeCCcchHHH-HHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENID--VVWVPGSFEIGV-VAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~--vv~VPGA~ELP~-aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
...||+++-..-. .....-.+|..+.++++|+..+.+. ....+..++-.. ++++++++ .++|||+|.+
T Consensus 108 g~~~i~~i~~~~~-~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~------- 179 (265)
T cd01543 108 GFRHFAFYGLPGA-RWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSLPKPVGIFACT------- 179 (265)
T ss_pred CCcEEEEEcCCCC-HHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcCCCCcEEEecC-------
Confidence 3458998854433 3344556899999999998631111 111222333222 34555544 5799999874
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMD 185 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~e 185 (218)
|.++..+.+++.+..++ +|==..|++.++.+
T Consensus 180 ---d~~a~g~~~~l~~~g~~--vp~di~vigfd~~~ 210 (265)
T cd01543 180 ---DARARQLLEACRRAGIA--VPEEVAVLGVDNDE 210 (265)
T ss_pred ---hHHHHHHHHHHHHhCCC--CCCceEEEeeCCch
Confidence 34677777777765553 45444566666654
No 194
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=72.80 E-value=24 Score=29.90 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=38.9
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCC-CCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYS-VKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~G-v~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
|+|+...-|.... .|+.+..+.|+++| .. +.+..... +.--...++. +.++||+|.+++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~i~~~l~~~g~~~---l~~~~~~~--~~~~~~~~~~-~~~vdGvIi~~~ 61 (247)
T cd06276 2 ILLLLNKLSSFKE-IIYNSFVNTLGKNAQVD---LYFHHYNE--DLFKNIISNT-KGKYSGYVVMPH 61 (247)
T ss_pred EEEEEecCchHHH-HHHHHHHHHHHhcCcEE---EEEEcCch--HHHHHHHHHH-hcCCCEEEEecC
Confidence 6778877765555 58999999999999 52 33333332 3222233333 588999999875
No 195
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=72.73 E-value=31 Score=28.88 Aligned_cols=96 Identities=22% Similarity=0.295 Sum_probs=56.2
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchH---HHHHHHhhh-cCCccEEEEEeeeeeCCc
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEI---GVVAQQLGK-SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~EL---P~aak~L~~-~~~yDaVIaLG~VIrGeT 149 (218)
..||+++.+.=+..-...-.++..+.++++ |.. +.. ...+.+.. --.++++++ ..++|+|+|.
T Consensus 122 ~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------- 189 (275)
T cd06320 122 GGKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIE---VVA-SQPADWDREKAYDVATTILQRNPDLKAIYCN-------- 189 (275)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcE---EEE-ecCCCccHHHHHHHHHHHHHhCCCccEEEEC--------
Confidence 459999876433333445568999999998 653 211 12233332 123444444 4568888774
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~ 188 (218)
.|.++..+.++|.+..+..+++ |++.++...+.
T Consensus 190 --~d~~a~~~~~al~~~g~~~di~----vig~d~~~~~~ 222 (275)
T cd06320 190 --NDTMALGVVEAVKNAGKQGKVL----VVGTDGIPEAY 222 (275)
T ss_pred --CchhHHHHHHHHHhcCCCCCeE----EEecCCCHHHH
Confidence 4557777888887766643333 44556655554
No 196
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.62 E-value=3.2 Score=36.25 Aligned_cols=89 Identities=15% Similarity=0.220 Sum_probs=60.6
Q ss_pred HHHHHHHHCCCCCCCeEE-EEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHH-------HHHHHHHHHHHhc
Q 027801 96 GALETFKKYSVKEENIDV-VWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDA-------VANSAASGVLSAG 167 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~v-v~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~-------Va~~vs~gLm~ls 167 (218)
...+.|.+-|+. .+++ ++.|+++|. ++++.++. .|.+|..|.|+.-++-+.-. |+-.....+++..
T Consensus 20 ~ia~al~~gGi~--~iEit~~tp~a~~~---I~~l~~~~-~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~vi~~a 93 (201)
T PRK06015 20 PLARALAAGGLP--AIEITLRTPAALDA---IRAVAAEV-EEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQELLAAA 93 (201)
T ss_pred HHHHHHHHCCCC--EEEEeCCCccHHHH---HHHHHHHC-CCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHHH
Confidence 445667777886 4444 347887773 44554332 47889999997644433211 2223567889999
Q ss_pred hhcCCceEEEEcCCCCHHHHHHh
Q 027801 168 VNSGVPCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 168 L~~~vPVifGVLT~~n~eQA~~R 190 (218)
.++++|++=|++|+....+|++-
T Consensus 94 ~~~~i~~iPG~~TptEi~~A~~~ 116 (201)
T PRK06015 94 NDSDVPLLPGAATPSEVMALREE 116 (201)
T ss_pred HHcCCCEeCCCCCHHHHHHHHHC
Confidence 99999999999998888888754
No 197
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=72.43 E-value=20 Score=30.66 Aligned_cols=94 Identities=12% Similarity=-0.007 Sum_probs=52.8
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCC---CCCCCeEEEEeCCc-chHH-HHHHHhhhcCCccEEEEEeeeeeCC
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYS---VKEENIDVVWVPGS-FEIG-VVAQQLGKSGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~G---v~~e~I~vv~VPGA-~ELP-~aak~L~~~~~yDaVIaLG~VIrGe 148 (218)
...||+++.+.-. ....+..+|..+.++++| ...+...+...+.. ++-. -+++.+++.+ +|||+|..-.
T Consensus 120 G~~~I~~i~~~~~-~~~~~r~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-pdaI~~~nd~---- 193 (265)
T cd06354 120 KTGKVGFIGGMDI-PLIRRFEAGFEAGVKYVNPGVPDIEVLVQYAGSFNDPAKGKEIAQAMYDQG-ADVIFAAAGG---- 193 (265)
T ss_pred CCCeEEEEecccC-hHHHHHHHHHHHHHHHHhccCCCceEEEEEcCcccCHHHHHHHHHHHHHCC-CcEEEECCCC----
Confidence 4568999976433 224455589999999998 64222222222222 2322 3456666544 7998887543
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
++..+.+++.+.. ..|++.++..++
T Consensus 194 ------~A~gv~~al~~~g--------isIvGfD~~~~~ 218 (265)
T cd06354 194 ------TGNGVFQAAKEAG--------VYAIGVDSDQYY 218 (265)
T ss_pred ------CchHHHHHHHhcC--------CeEEEecCcccc
Confidence 4445555555543 455566664443
No 198
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=72.29 E-value=25 Score=29.58 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=55.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH---HHHHHHhhhc-CCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI---GVVAQQLGKS-GKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL---P~aak~L~~~-~~yDaVIaLG~VIrGeT~ 150 (218)
+.|++++.+.-.......-++|..+.++++|+. +... ..|.+.. --+++.+++. .++|+|+|....
T Consensus 120 g~~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~------ 189 (271)
T cd06314 120 GGKVAIFVGSLGADNAKERIQGIKDAIKDSKIE---IVDT-RGDEEDFAKAKSNAEDALNAHPDLKCMFGLYAY------ 189 (271)
T ss_pred CCEEEEEecCCCCCCHHHHHHHHHHHHhcCCcE---EEEE-ecCccCHHHHHHHHHHHHHhCCCccEEEecCCc------
Confidence 447767666544345566778999999999874 2222 2344432 2344555543 568999977443
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~ 188 (218)
.+..+.++|.+..+..++ .|++-++.+.+.
T Consensus 190 ----~a~~~~~al~~~g~~~di----~vig~d~~~~~~ 219 (271)
T cd06314 190 ----NGPAIAEAVKAAGKLGKV----KIVGFDEDPDTL 219 (271)
T ss_pred ----cHHHHHHHHHHcCCCCce----EEEEeCCCHHHH
Confidence 344456667766665232 345556665553
No 199
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=72.17 E-value=16 Score=32.22 Aligned_cols=89 Identities=18% Similarity=0.322 Sum_probs=68.1
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC--CcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP--GSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP--GA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
+.|+-|+-.- -.+.....||+.+..+|++.-|.|.+-+.| |--||--+++..++-.+....+-.|.+.-|
T Consensus 83 GKRvIiiGGG---AqVsqVA~GAIsEADRHNiRGERISvDTiPlVGEE~laEAVkAV~rLpRv~iLVLAGslMGG----- 154 (218)
T COG1707 83 GKRVIIIGGG---AQVSQVARGAISEADRHNIRGERISVDTIPLVGEEELAEAVKAVARLPRVGILVLAGSLMGG----- 154 (218)
T ss_pred CcEEEEECCc---hhHHHHHHhhcchhhhcccccceeeeecccccChHHHHHHHHHHhccccceeEEEecccccc-----
Confidence 4566555332 234566789999999999887776665555 888898888888877888888888887654
Q ss_pred HHHHHHHHHHHHHhchhcCCceEE
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
.++.+...+--++++|||.
T Consensus 155 -----kIteaVk~lr~~hgI~VIS 173 (218)
T COG1707 155 -----KITEAVKELREEHGIPVIS 173 (218)
T ss_pred -----hHHHHHHHHHHhcCCeEEE
Confidence 4678888999999999985
No 200
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=72.13 E-value=45 Score=27.81 Aligned_cols=119 Identities=22% Similarity=0.224 Sum_probs=67.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHH---HHHHHhhh-cCCccEEEEEeeeeeCCc
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIG---VVAQQLGK-SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP---~aak~L~~-~~~yDaVIaLG~VIrGeT 149 (218)
..||+++.+.-+......=.+|..+.|+++| . +++.. ..+-++-- -+++++++ ..++|||+|.+-
T Consensus 123 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d------ 192 (272)
T cd06301 123 KGNVAILMGPLGQSAQIDRTKGVEEVLAKYP-D---IKVVEEQTANWSRAEAMDLMENWLSSGGKIDAVVANND------ 192 (272)
T ss_pred CccEEEEECCCCCccHHHHHHHHHHHHHHCC-C---cEEEecCCCCccHHHHHHHHHHHHHhCCCCCEEEECCC------
Confidence 4589999887665555566689999999988 2 22222 23333321 13344443 356899988543
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHH--hhCC-------CCCCcHHHHHHHHHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALN--RAGG-------KSGNKGAEAALTAIEMA 210 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~--Rag~-------k~gnKG~EAA~aAleM~ 210 (218)
.++..+.+.+.+..+. |==..|++.++.+.+.. +.+. ....-|.+|+...++++
T Consensus 193 ----~~a~~~~~~l~~~g~~---~~di~ivg~d~~~~~~~~~~~~~~~ttv~~~~~~~g~~a~~~l~~~l 255 (272)
T cd06301 193 ----EMALGAIMALKAAGKS---DKDVPVAGIDGTPDALAAVKKGDLDVTVFQDAKGQGAGALDAALKLA 255 (272)
T ss_pred ----chHHHHHHHHHHcCCC---CCCcEEEeeCCCHHHHHHHHhCCceEEEecCHHHHHHHHHHHHHHHh
Confidence 3666677777766653 21234455555544432 1121 12345666666666654
No 201
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.73 E-value=54 Score=27.21 Aligned_cols=114 Identities=19% Similarity=0.191 Sum_probs=64.8
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcc--hHH-HHHHHhhh-cCCccEEEEEeeeeeCCch
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSF--EIG-VVAQQLGK-SGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~--ELP-~aak~L~~-~~~yDaVIaLG~VIrGeT~ 150 (218)
.||+++..... .....-.+|..+.++++ |+. +...+... |-. -.++.+++ ..++|||+|.+-.
T Consensus 122 ~~i~~i~~~~~-~~~~~R~~gf~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~------ 189 (267)
T cd06322 122 GQVAIIDYPTV-QSVVDRVRGFKEALADYPNIK-----IVAVQPGITRAEALTAAQNILQANPDLDGIFAFGDD------ 189 (267)
T ss_pred ceEEEEecCCC-ccHHHHHHHHHHHHHhCCCcE-----EEEecCCCChHHHHHHHHHHHHhCCCCCEEEEcCCc------
Confidence 48999865432 23445668999999998 764 22233222 222 22344443 3568999986543
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh---CC-------CCCCcHHHHHHHHHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA---GG-------KSGNKGAEAALTAIEMA 210 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra---g~-------k~gnKG~EAA~aAleM~ 210 (218)
++..+.++|.+..+ -++.| ++.++...+.... +. ....-|.+|+..+++++
T Consensus 190 ----~a~~~~~al~~~g~-~di~v----vg~d~~~~~~~~~~~~~~~ltti~~~~~~~g~~a~~~l~~~i 250 (267)
T cd06322 190 ----AALGAVSAIKAAGR-DNVKV----IGFDGMPEARKAVDGEPPFVAVIRQYPDQMGKKAIDAAADVL 250 (267)
T ss_pred ----HHHHHHHHHHHCCC-CCeEE----EEecCCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHHHHh
Confidence 77788888888887 33333 2334444443321 11 12346666666666655
No 202
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=71.10 E-value=31 Score=37.34 Aligned_cols=107 Identities=7% Similarity=0.078 Sum_probs=64.5
Q ss_pred CCCCEEEEEEcccCHHH-HHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhc---CCccEEEEEeeeeeCC
Q 027801 73 NEGLRFALVVARFNELV-TKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKS---GKYTAVLCIGAVVRGD 148 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~I-t~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~---~~yDaVIaLG~VIrGe 148 (218)
....+|||+.-|-+-.= .-..++.-++.|++.|+. +--+.+.|..+..-.+..+... ...|+||.+-+--=+.
T Consensus 69 ~~~P~VgIlfyrs~~~~g~~~~vdaLI~~LE~~G~n---vipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f~l~~ 145 (1098)
T PF02514_consen 69 PNRPTVGILFYRSYWLSGNTAVVDALIRALEERGLN---VIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGFSLGG 145 (1098)
T ss_pred CCCCEEEEEeehhhhhcCCcHHHHHHHHHHHHCCCe---EEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCccccCC
Confidence 56789999986655221 114556668889999985 5566676644444446665544 6799999876542222
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
.+-.. ...-| -+.|+||+.++..-....+.|+.+
T Consensus 146 ~~~~~-----~~~~L----~~LnVPVlq~i~~~~~t~eeW~~S 179 (1098)
T PF02514_consen 146 GPAGG-----AIELL----KELNVPVLQAITLYYQTREEWEES 179 (1098)
T ss_pred CCcch-----hHHHH----HHCCCCEEEeeccCCCCHHHHHhC
Confidence 22111 12222 245999999998844444556553
No 203
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=70.69 E-value=5.6 Score=34.80 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=60.1
Q ss_pred HHHHHHHHCCCCCCCeEEE-EeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHH-------HHHHHHHHHHHhc
Q 027801 96 GALETFKKYSVKEENIDVV-WVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDA-------VANSAASGVLSAG 167 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~vv-~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~-------Va~~vs~gLm~ls 167 (218)
...+.|.+.|+. .+++- +-|+++|. ++++.+..+ |.+|..|.|..-++-+.-. |+-.....+.+..
T Consensus 24 ~~~~al~~~Gi~--~iEit~~t~~a~~~---i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v~~~~ 97 (204)
T TIGR01182 24 PLAKALIEGGLR--VLEVTLRTPVALDA---IRLLRKEVP-DALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPELAKHA 97 (204)
T ss_pred HHHHHHHHcCCC--EEEEeCCCccHHHH---HHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHHHHHH
Confidence 445667777886 34433 46777773 444443322 7889999997644433221 1223456889999
Q ss_pred hhcCCceEEEEcCCCCHHHHHHh
Q 027801 168 VNSGVPCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 168 L~~~vPVifGVLT~~n~eQA~~R 190 (218)
.++++|++-|++|+....+|++.
T Consensus 98 ~~~~i~~iPG~~TptEi~~A~~~ 120 (204)
T TIGR01182 98 QDHGIPIIPGVATPSEIMLALEL 120 (204)
T ss_pred HHcCCcEECCCCCHHHHHHHHHC
Confidence 99999999999999888999865
No 204
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=70.65 E-value=36 Score=29.11 Aligned_cols=88 Identities=18% Similarity=0.163 Sum_probs=54.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC-c-ch-HHHHHHHhhh-cCCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG-S-FE-IGVVAQQLGK-SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG-A-~E-LP~aak~L~~-~~~yDaVIaLG~VIrGeT 149 (218)
...||+++..+=+......-.+|..+.|++++. ++.++..++ . .+ .--.++.+++ ..++|+|+|.+..
T Consensus 125 g~~~i~~l~~~~~~~~~~~R~~gf~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~----- 196 (294)
T cd06316 125 GKGKVGLIYHGADYFVTNQRDQGFKETIKKNYP---DITIVAEKGIDGPSKAEDIANAMLTQNPDLKGIYAVWDV----- 196 (294)
T ss_pred CCceEEEEeCCCCcccHHHHHHHHHHHHHHhCC---CcEEEeecCCcchhHHHHHHHHHHHhCCCeeEEEeCCCc-----
Confidence 346999997754444556677899999987763 334443322 2 11 2233455554 3578999886443
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceE
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
++..+.+++.+..++ +++|+
T Consensus 197 -----~a~g~~~~l~~~g~~-di~vv 216 (294)
T cd06316 197 -----PAEGVIAALRAAGRD-DIKVT 216 (294)
T ss_pred -----hhHHHHHHHHHcCCC-CceEE
Confidence 577888888887773 55433
No 205
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=70.49 E-value=59 Score=26.74 Aligned_cols=101 Identities=24% Similarity=0.276 Sum_probs=58.3
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhh-cCCccEEEEEeeeeeCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGK-SGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~-~~~yDaVIaLG~VIrGeT~H~ 152 (218)
..||+++...-.....+.-.+|..+.++++|+......+...+..+|-. -.++.+++ ...+|||+|..-
T Consensus 115 ~~~i~~l~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~--------- 185 (267)
T cd06284 115 HRRIALITGPRDNPLARDRLEGYRQALAEAGLPADEELIQEGDFSLESGYAAARRLLALPDRPTAIFCFSD--------- 185 (267)
T ss_pred CceEEEEcCCccchhHHHHHHHHHHHHHHcCCCCCcceEEeCCCChHHHHHHHHHHHhCCCCCcEEEEcCc---------
Confidence 4589999775554556666799999999999653222222222223311 12334443 346899998643
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
..+..+.++|.+..+. +|=-..|++.++.+.+
T Consensus 186 -~~a~g~~~al~~~g~~--~p~~v~v~g~d~~~~~ 217 (267)
T cd06284 186 -EMAIGAISALKELGLR--VPEDISVVGFDDIDFA 217 (267)
T ss_pred -HHHHHHHHHHHHcCCC--CccceeEEEeCCHHHH
Confidence 2445666777665543 3334456666666554
No 206
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=70.43 E-value=59 Score=26.74 Aligned_cols=85 Identities=13% Similarity=0.108 Sum_probs=51.4
Q ss_pred CCCEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC-cch-HHHHHHHhhhcC-CccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPG-SFE-IGVVAQQLGKSG-KYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG-A~E-LP~aak~L~~~~-~yDaVIaLG~VIrGeT 149 (218)
...||+++...-+ ..-...-.+|..+.++++|+..+ ...+..++ ..+ .--+++.+++++ ++|||+|.+.
T Consensus 115 g~~~i~~l~~~~~~~~~~~~r~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d------ 187 (267)
T cd06283 115 GYERILFVTEPLDEISPRMERYEGFKEALAEHGIGVN-EELIEIDDEDADELDERLRQLLNKPKKKTAIFAANG------ 187 (267)
T ss_pred CCCcEEEEecCccccccHHHHHHHHHHHHHHcCCCCC-cceeEecccchHHHHHHHHHHHcCCCCCCEEEEcCc------
Confidence 3468999976543 22334567899999999986422 22232332 232 334455665543 5999999854
Q ss_pred hhHHHHHHHHHHHHHHhchh
Q 027801 150 THYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~ 169 (218)
.++..+.+.+.+..+.
T Consensus 188 ----~~a~g~~~~l~~~g~~ 203 (267)
T cd06283 188 ----LILLEVLKALKELGIR 203 (267)
T ss_pred ----HHHHHHHHHHHHcCCC
Confidence 3666777777766553
No 207
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=70.25 E-value=22 Score=29.95 Aligned_cols=28 Identities=21% Similarity=0.099 Sum_probs=15.5
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCC
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSV 106 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv 106 (218)
||+|. .+....-..++.+..++++++|+
T Consensus 2 i~~v~-~~~~~~~~~~~~gi~~~~~~~g~ 29 (271)
T cd06314 2 IAVVT-NGASPFWKIAEAGVKAAGKELGV 29 (271)
T ss_pred eEEEc-CCCcHHHHHHHHHHHHHHHHcCC
Confidence 45554 33344455566666666666664
No 208
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=70.02 E-value=11 Score=32.77 Aligned_cols=46 Identities=33% Similarity=0.535 Sum_probs=32.7
Q ss_pred CCCEEEEEE---cccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch
Q 027801 74 EGLRFALVV---ARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE 121 (218)
Q Consensus 74 ~~~RIaIV~---Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E 121 (218)
.+.||+||+ +|... .+.++...+++|++.|+..+++.++--.|+-.
T Consensus 53 ~~~~V~Ivv~D~TRp~p--~~~il~~ll~~L~~~Gv~~~~i~ii~A~G~Hr 101 (204)
T PF09861_consen 53 PGKRVAIVVDDITRPTP--SDLILPALLEELEEAGVKDEDITIIIALGTHR 101 (204)
T ss_dssp T-SEEEEEEE-TTS-----HHHHHHHHHHHHHT-T-TT-EEEEEEE-TTS-
T ss_pred CCCeEEEEeCCCCCCCC--HHHHHHHHHHHHHhcCCCccCEEEEEeCCCCC
Confidence 568999999 77633 37899999999999999999999998888843
No 209
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=69.62 E-value=12 Score=29.59 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=46.5
Q ss_pred HHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHH------Hhchh
Q 027801 97 ALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVL------SAGVN 169 (218)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm------~lsL~ 169 (218)
..+.|+++|.+ -.....||...| |--+++++.+ ++|.||..|-+-.|+ +|++.+++..-.. .+.++
T Consensus 24 l~~~l~~~G~~--v~~~~~v~Dd~~~i~~~i~~~~~--~~DlvittGG~g~g~---~D~t~~ai~~~g~~~~~g~~~~~~ 96 (133)
T cd00758 24 LEALLEDLGCE--VIYAGVVPDDADSIRAALIEASR--EADLVLTTGGTGVGR---RDVTPEALAELGEREAHGKGVALA 96 (133)
T ss_pred HHHHHHHCCCE--EEEeeecCCCHHHHHHHHHHHHh--cCCEEEECCCCCCCC---CcchHHHHHHhcCEEeccCccccc
Confidence 34447778864 244446777665 4445555543 499999999985554 5555555554331 35555
Q ss_pred cCCceEEEEc
Q 027801 170 SGVPCIFGVL 179 (218)
Q Consensus 170 ~~vPVifGVL 179 (218)
-+.|.++|++
T Consensus 97 pg~~~~~~~~ 106 (133)
T cd00758 97 PGSRTAFGII 106 (133)
T ss_pred CCCceEEEEE
Confidence 6677777775
No 210
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=69.37 E-value=47 Score=28.57 Aligned_cols=93 Identities=18% Similarity=0.130 Sum_probs=57.4
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhh-cCCccEEEEEeeeeeCCchh
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGK-SGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~-~~~yDaVIaLG~VIrGeT~H 151 (218)
.|++++.+.++......-++|..+.++++|+. +.. ..++.+..- -+++.+++ ..++|+++|-
T Consensus 149 ~~i~~~~~~~~~~~~~~R~~gf~~al~~~g~~---~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~---------- 214 (295)
T PRK10653 149 AKVIQLEGIAGTSAARERGEGFKQAVAAHKFN---VLA-SQPADFDRTKGLNVMQNLLTAHPDVQAVFAQ---------- 214 (295)
T ss_pred ceEEEEEccCCCccHHHHHHHHHHHHhhCCCE---EEE-ecCCCCCHHHHHHHHHHHHHhCCCcCEEEEC----------
Confidence 47888877766556667889999999999874 221 223444321 22344444 3458898883
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.|.++..+.+.+.+..++ +++ |++.++.+++
T Consensus 215 ~d~~A~g~l~al~~~G~~-dv~----vig~d~~~~~ 245 (295)
T PRK10653 215 NDEMALGALRALQTAGKS-DVM----VVGFDGTPDG 245 (295)
T ss_pred CChhHHHHHHHHHHcCCC-ceE----EEEeCCCHHH
Confidence 345677777777777763 444 3455665554
No 211
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=69.31 E-value=63 Score=27.46 Aligned_cols=94 Identities=5% Similarity=-0.014 Sum_probs=55.1
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchHHH---HHHHhhhc-CCccEEEEEeeeeeCC
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIGAVVRGD 148 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~ELP~---aak~L~~~-~~yDaVIaLG~VIrGe 148 (218)
...||+++.+.-.. ....-.+|.++.++++ |+. + ...+++.++.-- +++.+++. .++|||+|.+
T Consensus 130 g~~~i~~l~~~~~~-~~~~R~~gf~~al~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~n------ 198 (280)
T cd06303 130 NHARYAMLYFSPGY-ISTARGDTFIDCVHARNNWT---L-TSEFYTDATRQKAYQATSDILSNNPDVDFIYACS------ 198 (280)
T ss_pred CCcEEEEEECCCCc-chhHHHHHHHHHHHhCCCce---E-EEeecCCCCHHHHHHHHHHHHHhCCCCcEEEECC------
Confidence 34689999764222 2234568999999998 653 2 223456665332 33444444 4689999843
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHH
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQ 186 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQ 186 (218)
|.++-.+.+.+.+..+..++ .|++.++...
T Consensus 199 ----d~~A~g~l~al~~~G~~~dv----~vvg~d~~~~ 228 (280)
T cd06303 199 ----TDIALGASDALKELGREDDI----LINGWGGGSA 228 (280)
T ss_pred ----cHHHHHHHHHHHHcCCCCCc----EEEecCCCHH
Confidence 44566666777666654333 3445565444
No 212
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=69.20 E-value=40 Score=28.06 Aligned_cols=100 Identities=15% Similarity=0.006 Sum_probs=57.0
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCC-CCCCCeEEEEeCCcch-HHHHHHHhhh-cCCc--cEEEEEeeeeeCCc
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYS-VKEENIDVVWVPGSFE-IGVVAQQLGK-SGKY--TAVLCIGAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~G-v~~e~I~vv~VPGA~E-LP~aak~L~~-~~~y--DaVIaLG~VIrGeT 149 (218)
..||+++... .......-.++..+.+++++ .........+.....+ .--.++.+++ ..+. |+|+|.+
T Consensus 120 ~~~i~~i~~~-~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~------- 191 (273)
T cd06305 120 KGNVGYVNVA-GFPPLDRRYDVWQAVLKAYPGIKEVAELGDVSNNTAQDAAAQVEAVLKKYPKGGIDAIWAAW------- 191 (273)
T ss_pred CCCEEEEEcc-CCchHHHHHHHHHHHHHHCCCcEEecccccccccchhHHHHHHHHHHHHCCCcccCeEEEcC-------
Confidence 4589999876 44455666678888898887 3211100111122222 2234455554 3457 8888863
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALN 189 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~ 189 (218)
+..+..+.+.|.+..+.- -..|++.++..++.+
T Consensus 192 ---d~~a~g~~~~l~~~g~~~----di~iig~d~~~~~~~ 224 (273)
T cd06305 192 ---DEFAKGAKQALDEAGRTD----EIKIYGVDISPEDLQ 224 (273)
T ss_pred ---hhhhHHHHHHHHHcCCCC----CceEEEecCCHHHHH
Confidence 446667777777777652 344556666555433
No 213
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=68.80 E-value=23 Score=29.78 Aligned_cols=40 Identities=10% Similarity=0.136 Sum_probs=31.8
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHH-CCCCCCCeEEEEeCCc
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKK-YSVKEENIDVVWVPGS 119 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~-~Gv~~e~I~vv~VPGA 119 (218)
+||+||....+ --|+.|.+.+.+.+++ .|+ +++++.+|..
T Consensus 2 ~kilIvy~S~~-G~T~~lA~~ia~g~~~~~G~---ev~~~~l~~~ 42 (200)
T PRK03767 2 AKVLVLYYSMY-GHIETMAEAVAEGAREVAGA---EVTIKRVPET 42 (200)
T ss_pred CeEEEEEcCCC-CHHHHHHHHHHHHHhhcCCc---EEEEEecccc
Confidence 37899987776 5688999999999987 777 4788888754
No 214
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=68.60 E-value=19 Score=30.55 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=32.3
Q ss_pred EEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc
Q 027801 77 RFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGS 119 (218)
Q Consensus 77 RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA 119 (218)
||..|...++ .--+..|++.+.+.+++.|++ +++++||+-
T Consensus 2 ki~~I~gs~r~~G~t~~l~~~~~~g~~~~G~E---~~~i~v~~~ 42 (207)
T COG0655 2 KILGINGSPRSNGNTAKLAEAVLEGAEEAGAE---VEIIRLPEK 42 (207)
T ss_pred eeeEEEecCCCCCcHHHHHHHHHHHHHHcCCE---EEEEEecCC
Confidence 5555555555 778889999999999999884 899999975
No 215
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=68.39 E-value=26 Score=32.08 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=41.0
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHH---hhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQ---LGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~---L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.|+.||..++-.. ...+...+.|++.|+. ++++..+|--.+. .+.+ .++..++|.||++| |.+..+
T Consensus 23 ~~~liv~~~~~~~---~~~~~v~~~l~~~~i~---~~~~~~~~~p~~~-~v~~~~~~~~~~~~d~IIavG----GGs~~D 91 (349)
T cd08550 23 SKVAVVGGKTVLK---KSRPRFEAALAKSIIV---VDVIVFGGECSTE-EVVKALCGAEEQEADVIIGVG----GGKTLD 91 (349)
T ss_pred CeEEEEEChHHHH---HHHHHHHHHHHhcCCe---eEEEEcCCCCCHH-HHHHHHHHHHhcCCCEEEEec----CcHHHH
Confidence 5888887655433 5567888888888873 3444444421222 2233 23567899999999 555554
No 216
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.33 E-value=70 Score=26.77 Aligned_cols=99 Identities=18% Similarity=0.171 Sum_probs=56.4
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCC---CeEEEE-eCCcchHH---HHHHHhh-hcCCccEEEEEeeeee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEE---NIDVVW-VPGSFEIG---VVAQQLG-KSGKYTAVLCIGAVVR 146 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e---~I~vv~-VPGA~ELP---~aak~L~-~~~~yDaVIaLG~VIr 146 (218)
+.||+++.+.-+......-.+|.++.|+++|+... ...++. ..+.+... -.+..++ +..++|||+|.+-
T Consensus 123 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d--- 199 (282)
T cd06318 123 PMKIILLSGDAGNLVGQARRDGFLLGVSEAQLRKYGKTNFTIVAQGYGDWTREGGLKAMEDLLVAHPDINVVYSEND--- 199 (282)
T ss_pred CceEEEEECCCCCchHhHHHHhHHHHHhhCcccccccCCeEEEecCCCCCCHHHHHHHHHHHHHhCCCcCEEEECCc---
Confidence 45899988755544455667899999999986421 233332 12333321 2334444 3456899999543
Q ss_pred CCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 147 GDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 147 GeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.++..+.+.+.+..+..++ .|++.++..++
T Consensus 200 -------~~a~g~~~al~~~g~~~dv----~vvg~d~~~~~ 229 (282)
T cd06318 200 -------DMALGAMRVLAEAGKTDDV----KVAAADGQKEA 229 (282)
T ss_pred -------chHHHHHHHHHHcCCCCCe----EEEecCCCHHH
Confidence 3555566666665553233 34455655555
No 217
>PRK04155 chaperone protein HchA; Provisional
Probab=67.93 E-value=13 Score=33.97 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=26.4
Q ss_pred CEEEEEEcccCHHHH--HH-------HH--HHHHHHHHHCCCCCCCeEEEEeCC
Q 027801 76 LRFALVVARFNELVT--KL-------LL--EGALETFKKYSVKEENIDVVWVPG 118 (218)
Q Consensus 76 ~RIaIV~Srfn~~It--~~-------Ll--~gA~~~L~~~Gv~~e~I~vv~VPG 118 (218)
.||+||+|..+..-. .. .. -.-.+.|++.|++ ++++..-|
T Consensus 50 kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~e---VdiAS~~G 100 (287)
T PRK04155 50 KKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFE---FDVATLSG 100 (287)
T ss_pred CeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCE---EEEEecCC
Confidence 399999997654210 01 11 1457899999984 88887755
No 218
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=67.70 E-value=27 Score=29.31 Aligned_cols=120 Identities=17% Similarity=0.224 Sum_probs=70.9
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhh---cCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~---~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.||+||.+.-.+. .-.+.|.+.|+++|+. + .++|-++.-.|--...+++ ..++|.+|+.. |-..|-
T Consensus 1 p~V~Ii~gs~SD~---~~~~~a~~~L~~~gi~---~-~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~A----G~~a~L 69 (150)
T PF00731_consen 1 PKVAIIMGSTSDL---PIAEEAAKTLEEFGIP---Y-EVRVASAHRTPERLLEFVKEYEARGADVIIAVA----GMSAAL 69 (150)
T ss_dssp -EEEEEESSGGGH---HHHHHHHHHHHHTT-E---E-EEEE--TTTSHHHHHHHHHHTTTTTESEEEEEE----ESS--H
T ss_pred CeEEEEeCCHHHH---HHHHHHHHHHHHcCCC---E-EEEEEeccCCHHHHHHHHHHhccCCCEEEEEEC----CCcccc
Confidence 3789999888876 6668999999999985 4 4579999998876666543 35688877754 555554
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCCC---CHHH--HHHh----hC--CCCCCcHHHHHHHHHHHHHHHhhh
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTCD---NMDQ--ALNR----AG--GKSGNKGAEAALTAIEMASLFEHH 216 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~~---n~eQ--A~~R----ag--~k~gnKG~EAA~aAleM~~L~~~~ 216 (218)
-=+.. =.+..|||..=.... ..+- ++-. +. .-.-|.|..||..|++++.+...-
T Consensus 70 pgvva----------~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~ 134 (150)
T PF00731_consen 70 PGVVA----------SLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPE 134 (150)
T ss_dssp HHHHH----------HHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HH
T ss_pred hhhhe----------eccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHH
Confidence 32211 125678776533322 1221 1111 11 113468999999999999876543
No 219
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=67.12 E-value=75 Score=26.62 Aligned_cols=121 Identities=21% Similarity=0.146 Sum_probs=73.2
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHH---HHHHHhhhcC--CccEEEEEeeeeeC
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIG---VVAQQLGKSG--KYTAVLCIGAVVRG 147 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP---~aak~L~~~~--~yDaVIaLG~VIrG 147 (218)
...||+++.+..+......-++|..+.|++++ ++++.. +.+.++.- -+++.+++++ ++|+|+|.+-
T Consensus 123 g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aI~~~~d---- 194 (273)
T cd06309 123 GKGNIVELQGTVGSSVAIDRKKGFAEVIKKYP----NMKIVASQTGDFTRAKGKEVMEALLKAHGDDIDAVYAHND---- 194 (273)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHHHCC----CCEEeeccCCcccHHHHHHHHHHHHHhCCCCccEEEECCc----
Confidence 45699999988877666777899999999874 123322 23444432 2345555543 6899877543
Q ss_pred CchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh-CC-------CCCCcHHHHHHHHHHHH
Q 027801 148 DTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA-GG-------KSGNKGAEAALTAIEMA 210 (218)
Q Consensus 148 eT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra-g~-------k~gnKG~EAA~aAleM~ 210 (218)
.++..+.+++.+..+. +|==..|++.++...+.++. .+ .....|..|+..+++++
T Consensus 195 ------~~a~g~~~a~~~~g~~--ip~di~iig~d~~~~~~~~~~~~~lt~~~~~~~~~g~~a~~~l~~~i 257 (273)
T cd06309 195 ------EMALGAIQAIKAAGKK--PGKDIKIVSIDGTKDAFQAMADGKLNATVECNPLFGPLAFDTLEKYL 257 (273)
T ss_pred ------HHHHHHHHHHHHcCCC--CCCCeEEEecCCCHHHHHHHHcCceEEEEecChhHHHHHHHHHHHHh
Confidence 3666777777776553 33334566777666553221 11 12234777777766665
No 220
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=66.26 E-value=30 Score=29.32 Aligned_cols=41 Identities=10% Similarity=0.120 Sum_probs=31.2
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcc
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSF 120 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~ 120 (218)
.||+||....+ --|++|.+...+.+++. |+ +++++.||...
T Consensus 1 ~kilIiY~S~~-G~T~~lA~~ia~g~~~~~g~---ev~~~~v~~~~ 42 (197)
T TIGR01755 1 VKVLVLYYSMY-GHIETMARAVAEGAREVDGA---EVVVKRVPETV 42 (197)
T ss_pred CeEEEEEeCCC-CHHHHHHHHHHHHHHhcCCC---EEEEEeccccC
Confidence 47899988775 44678888888888775 76 47888998764
No 221
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=66.02 E-value=80 Score=26.54 Aligned_cols=123 Identities=18% Similarity=0.159 Sum_probs=68.7
Q ss_pred CCCCEEEEEEcccC-----HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhc---CCccEEEEE
Q 027801 73 NEGLRFALVVARFN-----ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS---GKYTAVLCI 141 (218)
Q Consensus 73 ~~~~RIaIV~Srfn-----~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~---~~yDaVIaL 141 (218)
....||+++...-+ ......-.+|..+.+.++|.. ....+ +.|.|..- -.++.++++ ..+|||+|.
T Consensus 110 ~g~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~ 186 (270)
T cd01544 110 LGHTRIGFIGGEEKTTDGHEYIEDPRETAFREYMKEKGLY-DPELI--YIGDFTVESGYQLMKEALKSLGDNLPTAFFIA 186 (270)
T ss_pred cCCCcEEEECCCcccccccchhhhHHHHHHHHHHHHcCCC-ChheE--eeCCCCHHHHHHHHHHHHhccCCCCCCEEEEc
Confidence 34568999976543 124455679999999999952 11112 34555432 234455554 358999984
Q ss_pred eeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhC--CCCCCcHHHHHHHHHHHH
Q 027801 142 GAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG--GKSGNKGAEAALTAIEMA 210 (218)
Q Consensus 142 G~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag--~k~gnKG~EAA~aAleM~ 210 (218)
.+.++..+.+.+.+..++ +|==..|++.++...+..... ....-.-.+.+..|++|+
T Consensus 187 ----------~d~~a~g~~~~l~~~g~~--vp~di~v~g~d~~~~~~~~~p~lttv~~~~~~~g~~a~~~l 245 (270)
T cd01544 187 ----------SDPMAIGALRALQEAGIK--VPEDVSVISFNDIEVAKYVSPPLSTVKIDTEEMGETAVDLL 245 (270)
T ss_pred ----------CcHHHHHHHHHHHHcCCC--CCCceEEEEECChhHHhhcCCCCceecCCHHHHHHHHHHHH
Confidence 345777777888776553 342234566666544322110 112233455566666655
No 222
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=65.80 E-value=11 Score=35.05 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=40.3
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc------hHHHHHHHhhhcCCccEEEEEeeeeeCCc
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF------EIGVVAQQLGKSGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~------ELP~aak~L~~~~~yDaVIaLG~VIrGeT 149 (218)
.|+.||..+.-.. ..+++...+.|++.|+. +.+ ..|.- ++=-.+ .+++..++|.||++| |..
T Consensus 23 ~~~livt~~~~~~--~~~~~~v~~~L~~~~~~---~~~--f~~v~~~~~~~~v~~~~-~~~~~~~~D~IIaiG----GGS 90 (386)
T cd08191 23 SRALIVTDERMAG--TPVFAELVQALAAAGVE---VEV--FDGVLPDLPRSELCDAA-SAAARAGPDVIIGLG----GGS 90 (386)
T ss_pred CeEEEEECcchhh--cchHHHHHHHHHHcCCe---EEE--ECCCCCCcCHHHHHHHH-HHHHhcCCCEEEEeC----Cch
Confidence 5888888655433 36677778888888874 333 34443 111222 224568999999999 555
Q ss_pred hhH
Q 027801 150 THY 152 (218)
Q Consensus 150 ~H~ 152 (218)
..+
T Consensus 91 ~iD 93 (386)
T cd08191 91 CID 93 (386)
T ss_pred HHH
Confidence 554
No 223
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=65.77 E-value=47 Score=28.70 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=46.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC-CcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-GSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP-GA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..||+||... ..-...+.+...+.+++.|.+ .+..+++| |.-+.--.++++. +.+.|+|+..+.
T Consensus 135 ~~~v~iv~~~--~~~g~~~~~~~~~~~~~~G~~--vv~~~~~~~~~~d~~~~~~~l~-~~~~d~v~~~~~ 199 (343)
T PF13458_consen 135 AKKVAIVYPD--DPYGRSLAEAFRKALEAAGGK--VVGEIRYPPGDTDFSALVQQLK-SAGPDVVVLAGD 199 (343)
T ss_dssp TSEEEEEEES--SHHHHHHHHHHHHHHHHTTCE--EEEEEEE-TTSSHHHHHHHHHH-HTTTSEEEEEST
T ss_pred CcEEEEEecC--chhhhHHHHHHHHHHhhcCce--eccceecccccccchHHHHHHh-hcCCCEEEEecc
Confidence 5799999866 445678888999999999985 34455555 7777777777774 468998666653
No 224
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=65.73 E-value=21 Score=27.11 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=40.5
Q ss_pred HHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceE
Q 027801 96 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
+--+.|++.|+. +..+..|- -.-|-+... ++.+++|.||.+= .+.. ...--.-|.+.++++++|++
T Consensus 34 gT~~~l~~~gi~---~~~v~~~~-~~~~~i~~~-i~~~~id~vIn~~---~~~~------~~~~~~~iRR~Av~~~ipl~ 99 (110)
T cd01424 34 GTAKYLQEAGIP---VEVVNKVS-EGRPNIVDL-IKNGEIQLVINTP---SGKR------AIRDGFSIRRAALEYKVPYF 99 (110)
T ss_pred HHHHHHHHcCCe---EEEEeecC-CCchhHHHH-HHcCCeEEEEECC---CCCc------cCccHHHHHHHHHHhCCCEE
Confidence 445567777774 44443331 123554444 4788999999872 1222 12234568899999999998
No 225
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=65.51 E-value=12 Score=34.86 Aligned_cols=68 Identities=22% Similarity=0.235 Sum_probs=41.1
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc-----chHHHHHHHhhhcCCccEEEEEeeeeeCCc
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS-----FEIGVVAQQLGKSGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA-----~ELP~aak~L~~~~~yDaVIaLG~VIrGeT 149 (218)
+.|+.||.......-. .+++...+.|++.|+. +.+..|. +|.-..+-.+++..++|+||++| |.+
T Consensus 28 ~~r~livt~~~~~~~~-~~~~~v~~~L~~~g~~-----~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiG----GGS 97 (382)
T cd08187 28 GKKVLLVYGGGSIKKN-GLYDRVIASLKEAGIE-----VVELGGVEPNPRLETVREGIELCKEEKVDFILAVG----GGS 97 (382)
T ss_pred CCEEEEEeCCcHHHhc-CcHHHHHHHHHHcCCe-----EEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeC----ChH
Confidence 3689999875332211 3456667788887763 3333332 33333334445778999999999 566
Q ss_pred hhH
Q 027801 150 THY 152 (218)
Q Consensus 150 ~H~ 152 (218)
..+
T Consensus 98 ~iD 100 (382)
T cd08187 98 VID 100 (382)
T ss_pred HHH
Confidence 555
No 226
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]
Probab=65.32 E-value=25 Score=30.97 Aligned_cols=58 Identities=12% Similarity=0.260 Sum_probs=40.7
Q ss_pred CCCCCCCEEEEEEccc-CHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEE
Q 027801 70 LTKNEGLRFALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVL 139 (218)
Q Consensus 70 ~~~~~~~RIaIV~Srf-n~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVI 139 (218)
+.|.++.|||+..... ... | -...|++.|++++++.++.+|.+ + +.. .+..+..|+++
T Consensus 131 ~adlkGk~vg~~~~~~~~~~----~---l~~~L~~~Gl~~~dv~~v~~~~~-~---~~~-al~~g~vda~~ 189 (335)
T COG0715 131 VADLKGKKVGVPFGGSTSDF----L---LRYALAKAGLDPDDVELVNLPPA-D---AVA-ALAAGQVDAFV 189 (335)
T ss_pred ccCCCCceEEEeCCCchHHH----H---HHHHHHHcCCCcccceEEeeCcH-H---HHH-HHhcCCcceEE
Confidence 3467889999998775 444 2 34567889999999999989888 2 222 23567888843
No 227
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.16 E-value=60 Score=26.68 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=56.9
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch---HHHHHHHhhhc-CCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE---IGVVAQQLGKS-GKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E---LP~aak~L~~~-~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++..+.+......-.+|..+.+++.|.. +... +.+.++ ..-.++.+++. .++|||+|.+-
T Consensus 115 ~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~------- 183 (266)
T cd06278 115 CRRIAFIGGPADTSTSRERERGFRDALAAAGVP---VVVE-EAGDYSYEGGYEAARRLLASRPRPDAIFCAND------- 183 (266)
T ss_pred CceEEEEcCCCcccchHHHHHHHHHHHHHcCCC---hhhh-ccCCCCHHHHHHHHHHHHhcCCCCCEEEEcCc-------
Confidence 469999988877777777889999999999875 2111 223332 22233444443 56899998632
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
..+..+.+.|.+... ..+|==..|++-++.+.+
T Consensus 184 ---~~a~~~~~~l~~~~~-~~~p~di~i~~~d~~~~~ 216 (266)
T cd06278 184 ---LLAIGVMDAARQEGG-LRVPEDVSVIGFDDIPMA 216 (266)
T ss_pred ---HHHHHHHHHHHHhcC-CCCccceEEEEeCChhHh
Confidence 245555566655321 123322345555555443
No 228
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=64.65 E-value=65 Score=30.84 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCC
Q 027801 93 LLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGV 172 (218)
Q Consensus 93 Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~v 172 (218)
|.+-..+.|.+.|+++.-+.++ ||.-+ +...|..+.++|.|.-- |.+.-...|+..+++-+..+.++.+=
T Consensus 179 l~~~~~~al~~~glP~gvv~~v--~g~~~---~~~~L~~~~~vd~v~fT-----Gs~~~g~~i~~~aa~~~~~~~lElGG 248 (478)
T cd07086 179 VTKILAEVLEKNGLPPGVVNLV--TGGGD---GGELLVHDPRVPLVSFT-----GSTEVGRRVGETVARRFGRVLLELGG 248 (478)
T ss_pred HHHHHHHhhhccCCCccceEEE--ecCch---hHHHHhcCCCCCEEEEE-----CcHHHHHHHHHHHhccCCcEEeecCC
Confidence 3344445566669987665555 56433 45666666779998754 56777888888888777777777653
Q ss_pred ceEEEEcCCCCHHHHHHhh
Q 027801 173 PCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 173 PVifGVLT~~n~eQA~~Ra 191 (218)
.--.-|.-..|.+.|.+++
T Consensus 249 ~~p~iV~~dAdl~~Aa~~i 267 (478)
T cd07086 249 NNAIIVMDDADLDLAVRAV 267 (478)
T ss_pred CCcEEEcCCCCHHHHHHHH
Confidence 3333344456788887664
No 229
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=64.60 E-value=29 Score=34.58 Aligned_cols=92 Identities=18% Similarity=0.127 Sum_probs=64.6
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHH-HhhhcCCccEEEEEeeeeeCCchhH
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ-QLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak-~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
...+|..|. ..+|.+-+.+...+++. ..++..|.+.||=-+.+- +.+..++||.||+ ||.|..+
T Consensus 13 ~~p~~~~~~-------~~~l~~~~~~i~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~dviIs-----rG~ta~~ 77 (538)
T PRK15424 13 DKPVIWTVS-------VSRLFELFRDISLEFDH---LANITPIQLGFEKAVTYIRKRLATERCDAIIA-----AGSNGAY 77 (538)
T ss_pred CCCeEEEee-------HHHHHHHHHHHHHhcCC---CceEEehhhhHHHHHHHHHHHHhhCCCcEEEE-----CchHHHH
Confidence 455676663 23688888888888875 356777888888443333 3235678999987 5666543
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCC
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGG 193 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~ 193 (218)
|. -..++||+.-=++..+.-+|+.+|..
T Consensus 78 ----------i~---~~~~iPVv~i~~s~~Dil~al~~a~~ 105 (538)
T PRK15424 78 ----------LK---SRLSVPVILIKPSGFDVMQALARARK 105 (538)
T ss_pred ----------HH---hhCCCCEEEecCCHhHHHHHHHHHHh
Confidence 11 23579999999999999999988863
No 230
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=64.53 E-value=94 Score=26.84 Aligned_cols=120 Identities=16% Similarity=0.093 Sum_probs=68.3
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhh-cCCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~-~~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++...-+......-.+|..+.|+++|+. +.. .++|.++..- +++.+++ ..++|+| |.
T Consensus 125 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~---~~~-~~~~~~~~~~~~~~~~~~L~~~~~~d~i-~~--------- 190 (295)
T TIGR02955 125 PTTLAWLPGPKNRGGTKPVTQGFRAALEGSDVE---ISA-ILWADNDKELQRNLLQDLLKKHPDIDYL-VG--------- 190 (295)
T ss_pred CeeEEEEeCCCcCCchhHHHHHHHHHHhcCCcE---EEE-EecCCCcHHHHHHHHHHHHHhCCCcCEE-Ee---------
Confidence 458999987666555666778999999998864 222 2455554332 3345553 3568964 32
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCC----CCCCc---HHHHHHHHHHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGG----KSGNK---GAEAALTAIEMAS 211 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~----k~gnK---G~EAA~aAleM~~ 211 (218)
.+.++..+.+.+.+..+..++-|+ |.-..+..-.++. .|. -..+. |..|+..+++++.
T Consensus 191 -~d~~a~g~l~al~~~g~~~dv~vv-g~~~~p~~~~~l~-~g~i~~~~~q~~~~~G~~av~~l~~~l~ 255 (295)
T TIGR02955 191 -SAVAAEAAISELRSLHMTQQIKLV-STYLSHGVYRGLK-RGKVLFAPTDQMVLQGKLAIDQAVRYLE 255 (295)
T ss_pred -ccHHHHHHHHHHHhhCccCCeEEE-EecCCHHHHHHHH-cCceeeecchhHHHHHHHHHHHHHHHHc
Confidence 156777888888776544344344 3222222233332 111 11122 7777777777654
No 231
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=64.07 E-value=12 Score=35.80 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=46.0
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHHH--HHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVV--AQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~a--ak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
..|+.||..++ ..-..+++..++.|++.|+. +.++. |++-=.+=.+ +-..++..++|.||+|| |+...
T Consensus 29 ~~r~liVTd~~--~~~~g~~~~v~~~L~~~~i~---~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalG----GGS~~ 99 (377)
T COG1454 29 AKRALIVTDRG--LAKLGLLDKVLDSLDAAGIE---YEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALG----GGSVI 99 (377)
T ss_pred CCceEEEECCc--cccchhHHHHHHHHHhcCCe---EEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeC----CccHH
Confidence 36899999997 33346788889999999864 33332 3333333333 23345778999999999 66666
Q ss_pred H
Q 027801 152 Y 152 (218)
Q Consensus 152 ~ 152 (218)
+
T Consensus 100 D 100 (377)
T COG1454 100 D 100 (377)
T ss_pred H
Confidence 5
No 232
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.71 E-value=14 Score=33.55 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=37.0
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC----CcchHHHHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP----GSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP----GA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
+||+|| .+.++.-+..+++...+.|+++|+. +.+.... +.++.+ ....+ ...++|.||++|=
T Consensus 1 m~v~iv-~~~~k~~~~~~~~~I~~~L~~~g~~---v~v~~~~~~~~~~~~~~-~~~~~-~~~~~d~vi~iGG 66 (277)
T PRK03708 1 MRFGIV-ARRDKEEALKLAYRVYDFLKVSGYE---VVVDSETYEHLPEFSEE-DVLPL-EEMDVDFIIAIGG 66 (277)
T ss_pred CEEEEE-ecCCCHHHHHHHHHHHHHHHHCCCE---EEEecchhhhcCccccc-ccccc-cccCCCEEEEEeC
Confidence 588888 5556666778889999999998874 2222100 111110 00111 2347999999984
No 233
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=63.71 E-value=24 Score=29.56 Aligned_cols=57 Identities=14% Similarity=0.023 Sum_probs=32.0
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHH-CCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEe
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKK-YSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~-~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG 142 (218)
|||+|+. .....-..|++++.+++++ .|.. ++.-++. +.. .++. +.+.++||+|..+
T Consensus 1 ~ig~i~~-~~~~~~~~~~~gi~~~~~~~~g~~-----~~~~~~~-~~~-~~~~-l~~~~vdGiI~~~ 58 (265)
T cd01543 1 RVALLVE-TSSSYGRGVLRGIARYAREHGPWS-----IYLEPRG-LQE-PLRW-LKDWQGDGIIARI 58 (265)
T ss_pred CeEEEec-ccchhhHHHHHHHHHHHHhcCCeE-----EEEeccc-chh-hhhh-ccccccceEEEEC
Confidence 5777775 3355666788888888888 5542 2222222 211 1122 2456688887754
No 234
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.59 E-value=7.5 Score=33.95 Aligned_cols=91 Identities=22% Similarity=0.182 Sum_probs=60.3
Q ss_pred HHHHHHHHCCCCCCCeEE-EEeCCcchHHHHHHHhhhc-CC-ccEEEEEeeeeeCCchhHH-------HHHHHHHHHHHH
Q 027801 96 GALETFKKYSVKEENIDV-VWVPGSFEIGVVAQQLGKS-GK-YTAVLCIGAVVRGDTTHYD-------AVANSAASGVLS 165 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~v-v~VPGA~ELP~aak~L~~~-~~-yDaVIaLG~VIrGeT~H~e-------~Va~~vs~gLm~ 165 (218)
...+.|.+-|+. .+++ ++-|+++| +++++.+. ++ .|.+|..|.|..-+.-+.- .|+-.....+.+
T Consensus 29 ~~~~al~~~Gi~--~iEit~~~~~a~~---~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~~~v~~ 103 (213)
T PRK06552 29 KISLAVIKGGIK--AIEVTYTNPFASE---VIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSFNRETAK 103 (213)
T ss_pred HHHHHHHHCCCC--EEEEECCCccHHH---HHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCCHHHHH
Confidence 445677777886 3443 23677766 34444332 22 4899999999754433321 122234577889
Q ss_pred hchhcCCceEEEEcCCCCHHHHHHhhC
Q 027801 166 AGVNSGVPCIFGVLTCDNMDQALNRAG 192 (218)
Q Consensus 166 lsL~~~vPVifGVLT~~n~eQA~~Rag 192 (218)
...+.++|++-|+.|+....+|++ .|
T Consensus 104 ~~~~~~i~~iPG~~T~~E~~~A~~-~G 129 (213)
T PRK06552 104 ICNLYQIPYLPGCMTVTEIVTALE-AG 129 (213)
T ss_pred HHHHcCCCEECCcCCHHHHHHHHH-cC
Confidence 999999999999999988888864 45
No 235
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=63.59 E-value=21 Score=32.72 Aligned_cols=69 Identities=10% Similarity=0.201 Sum_probs=42.2
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc--chHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS--FEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA--~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
+.|+.||....-. ....+...+.|++.|++. .....++|- +|.=--+-.+++..++|.||++| |++..+
T Consensus 22 ~~r~liv~d~~~~---~~~~~~v~~~l~~~~~~~--~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavG----GGs~~D 92 (345)
T cd08171 22 GKKVVVIGGKTAL---AAAKDKIKAALEQSGIEI--TDFIWYGGESTYENVERLKKNPAVQEADMIFAVG----GGKAID 92 (345)
T ss_pred CCEEEEEeCHHHH---HHHHHHHHHHHHHCCCeE--EEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeC----CcHHHH
Confidence 3688888865322 234677778888888741 223345552 23222223345678999999999 666665
No 236
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=63.52 E-value=13 Score=33.12 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=61.6
Q ss_pred HHHHHHHHCCCCCCCeEE-EEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHH---------HHHHHHHH
Q 027801 96 GALETFKKYSVKEENIDV-VWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVAN---------SAASGVLS 165 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~v-v~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~---------~vs~gLm~ 165 (218)
...+.|.+-|+. -|++ ++.|.++|.--.+.+.. . +++|.-|.|+. ...++-..+ .+..-+.+
T Consensus 29 ~~a~Ali~gGi~--~IEITl~sp~a~e~I~~l~~~~---p-~~lIGAGTVL~--~~q~~~a~~aGa~fiVsP~~~~ev~~ 100 (211)
T COG0800 29 PLAKALIEGGIP--AIEITLRTPAALEAIRALAKEF---P-EALIGAGTVLN--PEQARQAIAAGAQFIVSPGLNPEVAK 100 (211)
T ss_pred HHHHHHHHcCCC--eEEEecCCCCHHHHHHHHHHhC---c-ccEEccccccC--HHHHHHHHHcCCCEEECCCCCHHHHH
Confidence 445667777886 3443 66999999544444432 3 99999999986 333332222 24567889
Q ss_pred hchhcCCceEEEEcCCCCHHHHHHh
Q 027801 166 AGVNSGVPCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 166 lsL~~~vPVifGVLT~~n~eQA~~R 190 (218)
...++++|++=|+.|+....+|++.
T Consensus 101 ~a~~~~ip~~PG~~TptEi~~Ale~ 125 (211)
T COG0800 101 AANRYGIPYIPGVATPTEIMAALEL 125 (211)
T ss_pred HHHhCCCcccCCCCCHHHHHHHHHc
Confidence 9999999999999998888888765
No 237
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=63.43 E-value=73 Score=29.01 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=58.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHH---HHHHhhh-cCCccEEEEEeeeeeCC
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGV---VAQQLGK-SGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~---aak~L~~-~~~yDaVIaLG~VIrGe 148 (218)
..-||+|+.+.-...-...-.+++.+.+++... +++++. .++-++.-- +++.+++ ..+.|+|+|.+..
T Consensus 147 g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p---~~~vv~~~~~~~d~~~a~~~~~~lL~~~pdi~aI~~~~~~---- 219 (336)
T PRK15408 147 DKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHP---GWEIVTTQFGYNDATKSLQTAEGILKAYPDLDAIIAPDAN---- 219 (336)
T ss_pred CCCEEEEEECCCCCccHHHHHHHHHHHHHhhCC---CCEEEeecCCCCcHHHHHHHHHHHHHHCCCCcEEEECCCc----
Confidence 456999998754322223444777888765443 355554 356665443 3344444 4679999987554
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHH
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALN 189 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~ 189 (218)
....+.+++.+..+. ++.| .|+=+++...+++.
T Consensus 220 ------~~~Ga~~Al~~~g~~-~v~V-vG~D~~~~~~~~i~ 252 (336)
T PRK15408 220 ------ALPAAAQAAENLKRD-KVAI-VGFSTPNVMRPYVK 252 (336)
T ss_pred ------cHHHHHHHHHhCCCC-CEEE-EEeCCcHHHHHHHh
Confidence 233467777777665 4444 46655444455553
No 238
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=63.42 E-value=88 Score=27.32 Aligned_cols=122 Identities=15% Similarity=0.098 Sum_probs=66.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
...||+++...-+....+.-.++..+.++.+|+.. +-.++ .|.|+.. -.++++++. ..+|||+|.
T Consensus 173 G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~-~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------- 241 (327)
T PRK10339 173 GVNRIGFIGGEDEPGKADIREVAFAEYGRLKQVVR-EEDIW--RGGFSSSSGYELAKQMLAREDYPKALFVA-------- 241 (327)
T ss_pred CCCeEEEeCCccccchhhHHHHHHHHHHHHcCCCC-hhhee--ecCcChhHHHHHHHHHHhCCCCCCEEEEC--------
Confidence 34589999764432233334578888888888732 11222 2333322 234455543 458999983
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHH------hhCCCCCCcHHHHHHHHHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALN------RAGGKSGNKGAEAALTAIEMA 210 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~------Rag~k~gnKG~EAA~aAleM~ 210 (218)
.|.++..+.++|.+..+ .+|==..|++.++...+.. -..-.....|.+|+.-.++++
T Consensus 242 --~D~~A~g~~~al~~~g~--~vP~di~vigfD~~~~~~~~~p~ltti~~~~~~~g~~A~~~l~~~i 304 (327)
T PRK10339 242 --SDSIAIGVLRAIHERGL--NIPQDISLISVNDIPTARFTFPPLSTVRIHSEMMGSQGVNLLYEKA 304 (327)
T ss_pred --CcHHHHHHHHHHHHcCC--CCCCceEEEeeCChhHHHhCCCCceeeecCHHHHHHHHHHHHHHHh
Confidence 35577777777777665 3554455666666544321 111112234666666555554
No 239
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=63.19 E-value=58 Score=26.99 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=52.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhc-CCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-GKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~-~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++....+......-.+|..+.++++|++.+...+ +.|.+.-- -.++.++++ ..+|||+|-.
T Consensus 117 ~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-------- 186 (270)
T cd06296 117 HRRIGFITGPPDLLCSRARLDGYRAALAEAGIPVDPALV--REGDFSTESGFRAAAELLALPERPTAIFAGN-------- 186 (270)
T ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHHcCCCCChHHh--eeCCCCHHHHHHHHHHHHhCCCCCcEEEEcC--------
Confidence 458999988766556667789999999999875322222 23443322 123344433 5689888643
Q ss_pred hHHHHHHHHHHHHHHhchh
Q 027801 151 HYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~ 169 (218)
+.++..+.++|.+..++
T Consensus 187 --d~~a~~~~~~l~~~g~~ 203 (270)
T cd06296 187 --DLMALGVYEAARERGLR 203 (270)
T ss_pred --cHHHHHHHHHHHHhCCC
Confidence 33567778888777764
No 240
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=63.12 E-value=12 Score=30.55 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=37.4
Q ss_pred CCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 71 TKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 71 ~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
.|.++.||++........+. ...|+++|++.++++.+.+++ |-... .+..+..|++++
T Consensus 89 ~DLkGK~i~v~~~s~~~~~~-------~~~l~~~g~~~~~v~~v~~~~----~~~~~-al~~g~vDa~~~ 146 (216)
T PF09084_consen 89 ADLKGKKIGVSRGSSSEYFL-------RALLKKNGIDPDDVKIVNLGP----PELAQ-ALLSGQVDAAIL 146 (216)
T ss_dssp GGGTTSEEEESTTSHHHHHH-------HHHHHHTTT-GGGSEEEES-H----HHHHH-HHHTTSSSEEEE
T ss_pred HHhCCCEEEEecCcchhHHH-------HHHHHHhccccccceeeeeeh----hhhhh-hhhcCCCCEEEE
Confidence 35688999976644433322 345788999989999887753 33333 345789999884
No 241
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=63.05 E-value=28 Score=30.42 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=51.0
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-e-CCcch---HHHHHHHhhhc--CCccEEEEEeeeeeCC
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-V-PGSFE---IGVVAQQLGKS--GKYTAVLCIGAVVRGD 148 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-V-PGA~E---LP~aak~L~~~--~~yDaVIaLG~VIrGe 148 (218)
.+|+++.++-+..-.....+|.++.++++.- ...+.++. . .+.+. ---+++.+++. .++|||+|.+
T Consensus 120 ~~i~~i~g~~~~~~~~~R~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~aI~~~~------ 192 (302)
T TIGR02634 120 GNYFLMGGSPTDNNAKLLRGGQMKVLQPAID-SGDIKIVGDQWVDGWLPENALRIMENALTANDNKVDAVVASN------ 192 (302)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHhhhcc-CCCeEEecCcCCCCCCHHHHHHHHHHHHHhCCCCccEEEECC------
Confidence 3788887665544444556888888887521 01233321 0 13333 22345555543 4699999954
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCc
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVP 173 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vP 173 (218)
|.++..+.+++.+..+..+++
T Consensus 193 ----D~~A~g~~~al~~~g~~~di~ 213 (302)
T TIGR02634 193 ----DATAGGAIQALTAQGLAGKVP 213 (302)
T ss_pred ----CchHHHHHHHHHHCCCCCCeE
Confidence 457778888888877654555
No 242
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=63.00 E-value=9.4 Score=33.20 Aligned_cols=89 Identities=21% Similarity=0.297 Sum_probs=54.3
Q ss_pred HHHHHHHHCCCCCCCeEEE-EeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHH-------HHHHHHHHHhc
Q 027801 96 GALETFKKYSVKEENIDVV-WVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVA-------NSAASGVLSAG 167 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~vv-~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va-------~~vs~gLm~ls 167 (218)
...+.|.+.|+. .+++- +.|+++|. ++.+.++ ..|.+|..|.|+.-+.-+--.-+ =.....+.+..
T Consensus 24 ~~~~al~~gGi~--~iEiT~~t~~a~~~---I~~l~~~-~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~~~~~v~~~~ 97 (196)
T PF01081_consen 24 PIAEALIEGGIR--AIEITLRTPNALEA---IEALRKE-FPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPGFDPEVIEYA 97 (196)
T ss_dssp HHHHHHHHTT----EEEEETTSTTHHHH---HHHHHHH-HTTSEEEEES--SHHHHHHHHHHT-SEEEESS--HHHHHHH
T ss_pred HHHHHHHHCCCC--EEEEecCCccHHHH---HHHHHHH-CCCCeeEEEeccCHHHHHHHHHcCCCEEECCCCCHHHHHHH
Confidence 344566677875 34432 35777764 3434322 35889999999753332221111 12467789999
Q ss_pred hhcCCceEEEEcCCCCHHHHHHh
Q 027801 168 VNSGVPCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 168 L~~~vPVifGVLT~~n~eQA~~R 190 (218)
.++++|++=|++|+....+|++.
T Consensus 98 ~~~~i~~iPG~~TptEi~~A~~~ 120 (196)
T PF01081_consen 98 REYGIPYIPGVMTPTEIMQALEA 120 (196)
T ss_dssp HHHTSEEEEEESSHHHHHHHHHT
T ss_pred HHcCCcccCCcCCHHHHHHHHHC
Confidence 99999999999999999999865
No 243
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=62.81 E-value=60 Score=28.24 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=48.6
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH--H-HHHHHhhhc--CCccEEEEEeeeeeCCchh
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI--G-VVAQQLGKS--GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL--P-~aak~L~~~--~~yDaVIaLG~VIrGeT~H 151 (218)
.++++.+.-.......-.++..+.|+++|+..+.. ..+++.+.. . -.++.++++ .++|||+|.+-.
T Consensus 141 ~i~~~~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~~~~~~~~ai~~~~d~------- 211 (303)
T cd01539 141 QYVMLKGEPGHPDAIARTKYSIETLNDAGIKTEEL--ASDTANWDRAQAKDKMDALLLKYGDKIEAVIANNDA------- 211 (303)
T ss_pred EEEEEEcCCCCchhhhhhhhHHHHHHhcCCCeEEE--EeecCCCCHHHHHHHHHHHHHhcCCCccEEEECCch-------
Confidence 45666665554444556789999999998753222 223444442 2 245566544 348999987643
Q ss_pred HHHHHHHHHHHHHHhch
Q 027801 152 YDAVANSAASGVLSAGV 168 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL 168 (218)
++..+.+.+.+..+
T Consensus 212 ---~a~g~~~al~~~g~ 225 (303)
T cd01539 212 ---MALGAIEALQKYGY 225 (303)
T ss_pred ---HHHHHHHHHHHcCC
Confidence 55566777766554
No 244
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=62.78 E-value=42 Score=29.97 Aligned_cols=65 Identities=6% Similarity=0.069 Sum_probs=48.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHHhhhc--------------------C
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKS--------------------G 133 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~L~~~--------------------~ 133 (218)
..||+|+.. +......+.++..+.+++.|... +...++ ||.-+.--.++++... .
T Consensus 124 ~k~vaii~~--~~~~g~~~~~~f~~~~~~~G~~v--v~~~~~~~~~~d~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T cd06339 124 KRRPLVLAP--DGAYGQRVADAFRQAWQQLGGTV--VAIESYDPSPTDLSDAIRRLLGVDDSEQRIAQLKSLESEPRRRQ 199 (336)
T ss_pred ccceEEEec--CChHHHHHHHHHHHHHHHcCCce--eeeEecCCCHHHHHHHHHHHhccccchhhhhhhhhcccCccccC
Confidence 468999986 44567899999999999999852 333344 4888877777777543 2
Q ss_pred CccEEEEEee
Q 027801 134 KYTAVLCIGA 143 (218)
Q Consensus 134 ~yDaVIaLG~ 143 (218)
+.|+|+++|.
T Consensus 200 ~~d~v~~~~~ 209 (336)
T cd06339 200 DIDAIDAVAL 209 (336)
T ss_pred CCCcEEEEec
Confidence 7899998776
No 245
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=62.41 E-value=34 Score=34.70 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=63.6
Q ss_pred CCEEEEEEcccCH-----HHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch------------HH------HHHHHhhh
Q 027801 75 GLRFALVVARFNE-----LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE------------IG------VVAQQLGK 131 (218)
Q Consensus 75 ~~RIaIV~Srfn~-----~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E------------LP------~aak~L~~ 131 (218)
..-|||+ +.||+ .--+.|.+.+.+.+++.|.- -..+-||+-.| || ..+..+++
T Consensus 42 kP~IgI~-~s~~d~~p~h~hl~~l~~~vk~~i~~aGg~---p~ef~t~~v~DGiamG~~GM~~SL~SRelIAds~e~~~~ 117 (575)
T COG0129 42 KPIIGIA-NSYNDMVPGHQHLKDLAQLVKEGIREAGGV---PVEFGTIAVCDGIAMGHDGMPYSLPSRELIADSVEEVLS 117 (575)
T ss_pred CCeEEEE-eccccCcCchhhHHHHHHHHHHHHHHcCCc---eeEeCCCCccCccccCCCCcccccccHHHHHHHHHHHHh
Confidence 3446554 66764 34568889999999999853 24566777776 22 34445567
Q ss_pred cCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 132 SGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 132 ~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
...|||+|++|- |+-++-|++-.....++|-||-=
T Consensus 118 ~~~~Da~V~i~~------------CDKi~PG~lmaa~r~niPaIfv~ 152 (575)
T COG0129 118 AHPFDGVVLIGG------------CDKITPGMLMAAARLNIPAIFVS 152 (575)
T ss_pred ccCcceEEEecC------------CCCccHHHHHHHHhcCCCEEEec
Confidence 789999999984 67777788888888999999853
No 246
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=62.32 E-value=41 Score=29.42 Aligned_cols=92 Identities=18% Similarity=0.137 Sum_probs=59.7
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDA 154 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~ 154 (218)
..|++++...-+ ...+.+.++..+.++++|+..... ...-|+..+..-.++++.. .+.|+|++.+-. -
T Consensus 132 ~~~~~~i~~~~~-~~g~~~~~~~~~~~~~~G~~v~~~-~~~~~~~~d~~~~~~~i~~-~~pdaV~~~~~~---------~ 199 (341)
T cd06341 132 GTRAVALVTALS-AAVSAAAALLARSLAAAGVSVAGI-VVITATAPDPTPQAQQAAA-AGADAIITVLDA---------A 199 (341)
T ss_pred CcEEEEEEeCCc-HHHHHHHHHHHHHHHHcCCccccc-cccCCCCCCHHHHHHHHHh-cCCCEEEEecCh---------H
Confidence 568998876533 456778899999999999863221 2223456777666677754 479999876531 1
Q ss_pred HHHHHHHHHHHhchhcCCceEEEEcC
Q 027801 155 VANSAASGVLSAGVNSGVPCIFGVLT 180 (218)
Q Consensus 155 Va~~vs~gLm~lsL~~~vPVifGVLT 180 (218)
.+..+.+.+.+..++ .|+..++..
T Consensus 200 ~a~~~~~~~~~~G~~--~~~~~~~~~ 223 (341)
T cd06341 200 VCASVLKAVRAAGLT--PKVVLSGTC 223 (341)
T ss_pred HHHHHHHHHHHcCCC--CCEEEecCC
Confidence 466677777777653 455544433
No 247
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=62.10 E-value=85 Score=27.77 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=45.9
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
+.|++||.. +....+.+.+.+.+.+++.|.+ .+...++ +|.-+.--.++++. ..+.|+|+..+.
T Consensus 132 ~~~vail~~--d~~~g~~~~~~~~~~~~~~G~~--vv~~~~~~~~~~d~~~~v~~l~-~~~pd~v~~~~~ 196 (334)
T cd06356 132 GKKVYTIAA--DYNFGQISAEWVRKIVEENGGE--VVGEEFIPLDVSDFGSTIQKIQ-AAKPDFVMSILV 196 (334)
T ss_pred CCeEEEECC--CchhhHHHHHHHHHHHHHcCCE--EEeeeecCCCchhHHHHHHHHH-hcCCCEEEEecc
Confidence 368999974 5556677888999999999975 3334444 47777777777774 456899997654
No 248
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=61.67 E-value=78 Score=26.04 Aligned_cols=97 Identities=20% Similarity=0.171 Sum_probs=54.0
Q ss_pred CCCEEEEEEcccCH-HHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVARFNE-LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Srfn~-~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
...||+++...-.. .....-.+|..+.++++|.. ...++..+..+|-+. +++.+++++++|+|+|.+-
T Consensus 113 g~~~i~~v~~~~~~~~~~~~r~~gf~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~d-------- 182 (259)
T cd01542 113 GHKNIAYLGVSESDIAVGILRKQGYLDALKEHGIC--PPNIVETDFSYESAYEAAQELLEPQPPDAIVCATD-------- 182 (259)
T ss_pred CCCcEEEEcCCcccchhHHHHHHHHHHHHHHcCCC--hHHeeeccCchhhHHHHHHHHhcCCCCCEEEEcCc--------
Confidence 34689998643221 22234568999999999972 223333343444442 2234444333899998753
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNM 184 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~ 184 (218)
..+..+.+++.+..+. +|==..|++.++.
T Consensus 183 --~~a~g~~~~l~~~g~~--vp~di~v~g~d~~ 211 (259)
T cd01542 183 --TIALGAMKYLQELGRR--IPEDISVAGFGGY 211 (259)
T ss_pred --HHHHHHHHHHHHcCCC--CCCceEEEecCCc
Confidence 2566677777666553 3323345555544
No 249
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=61.58 E-value=57 Score=28.88 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=46.3
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC-CcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-GSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP-GA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..||+||.. +....+.+.+.+.+.+++.|+. .+....+| |.-+.--.++++. ..+.|+|+..+.
T Consensus 144 ~~~v~ii~~--~~~~g~~~~~~~~~~~~~~G~~--vv~~~~~~~~~~d~~~~v~~i~-~~~~d~v~~~~~ 208 (362)
T cd06343 144 NAKIAVLYQ--NDDFGKDYLKGLKDGLGDAGLE--IVAETSYEVTEPDFDSQVAKLK-AAGADVVVLATT 208 (362)
T ss_pred CceEEEEEe--ccHHHHHHHHHHHHHHHHcCCe--EEEEeeecCCCccHHHHHHHHH-hcCCCEEEEEcC
Confidence 469999975 4566778889999999999985 33444455 5666666677774 567899887764
No 250
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=60.99 E-value=76 Score=30.48 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=56.3
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE--eCCcc---hHHHHHHHhhhcCCccEEEEEeeeeeC
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW--VPGSF---EIGVVAQQLGKSGKYTAVLCIGAVVRG 147 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~--VPGA~---ELP~aak~L~~~~~yDaVIaLG~VIrG 147 (218)
.-+.|||||.|.=-.-+- ..+..+.+.... -++.++. |=|.- +|--+++.+-..++||.|| |+||
T Consensus 127 ~~p~~i~vits~~~aa~~-----D~~~~~~~r~p~-~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dvii----i~RG 196 (432)
T TIGR00237 127 HFPKRVGVITSQTGAALA-----DILHILKRRDPS-LKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLI----VGRG 196 (432)
T ss_pred CCCCEEEEEeCCccHHHH-----HHHHHHHhhCCC-ceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEE----EecC
Confidence 356799999998655443 445666665432 1344433 33443 3455555554456699987 5788
Q ss_pred CchhHHHHH---HHHHHHHHHhchhcCCceEEEE
Q 027801 148 DTTHYDAVA---NSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 148 eT~H~e~Va---~~vs~gLm~lsL~~~vPVifGV 178 (218)
+=.--|+-+ ..+++.+ -...+||+.||
T Consensus 197 GGs~eDL~~Fn~e~~~rai----~~~~~Pvis~i 226 (432)
T TIGR00237 197 GGSLEDLWSFNDEKVARAI----FLSKIPIISAV 226 (432)
T ss_pred CCCHHHhhhcCcHHHHHHH----HcCCCCEEEec
Confidence 876665443 3344444 45789999999
No 251
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=60.54 E-value=22 Score=33.47 Aligned_cols=95 Identities=23% Similarity=0.341 Sum_probs=60.8
Q ss_pred CCCEEEEEEcccCHH--------------HHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEE
Q 027801 74 EGLRFALVVARFNEL--------------VTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAV 138 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~--------------It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaV 138 (218)
...||+|+.+- ++. -...|+ ...|+++|.. .+....||.-.| |=-++++++ ..+|.|
T Consensus 167 ~~~rv~ii~tG-dEl~~~g~~~~~g~i~dsn~~~l---~~~l~~~G~~--~~~~~~v~Dd~~~i~~~l~~a~--~~~Dli 238 (394)
T cd00887 167 RRPRVAIISTG-DELVEPGEPLAPGQIYDSNSYML---AALLRELGAE--VVDLGIVPDDPEALREALEEAL--EEADVV 238 (394)
T ss_pred cCCEEEEEeCC-CcccCCCCCCCCCEEEEChHHHH---HHHHHHCCCE--EEEeceeCCCHHHHHHHHHHHh--hCCCEE
Confidence 56799998773 111 112233 3346667874 456666887766 444445554 349999
Q ss_pred EEEeeeeeCCchhHHHHHHHHHHH-----HHHhchhcCCceEEEEc
Q 027801 139 LCIGAVVRGDTTHYDAVANSAASG-----VLSAGVNSGVPCIFGVL 179 (218)
Q Consensus 139 IaLG~VIrGeT~H~e~Va~~vs~g-----Lm~lsL~~~vPVifGVL 179 (218)
|+-|-+-.|+ +|++.+++.+- +-.++++=|.|..+|++
T Consensus 239 ittGG~s~g~---~D~~~~al~~~g~~~~f~gv~~kPG~p~~~g~~ 281 (394)
T cd00887 239 ITSGGVSVGD---YDFVKEVLEELGGEVLFHGVAMKPGKPLAFGRL 281 (394)
T ss_pred EEeCCCCCCc---chhHHHHHHhCCCeEEEEEEEEecCCCEEEEEE
Confidence 9999986555 66666655542 33567888899999886
No 252
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=60.54 E-value=14 Score=34.89 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=38.5
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE----eCCcchHHHHHHHhhhcCCccEEEEEe
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW----VPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~----VPGA~ELP~aak~L~~~~~yDaVIaLG 142 (218)
.|+.||..+.-.. ..+++...+.|++.|+. +.++. -|. +|.=.-+-.+++..++|.||++|
T Consensus 24 ~~vlivt~~~~~~--~g~~~~v~~~L~~~gi~---~~~f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiG 88 (414)
T cd08190 24 RRVCLVTDPNLAQ--LPPVKVVLDSLEAAGIN---FEVYDDVRVEPT-DESFKDAIAFAKKGQFDAFVAVG 88 (414)
T ss_pred CeEEEEECcchhh--cchHHHHHHHHHHcCCc---EEEeCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeC
Confidence 5899998875332 23567777788888874 44442 232 33323333445678899999998
No 253
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=60.08 E-value=46 Score=30.34 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=40.8
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC-cchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG-SFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG-A~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.|+.||..++-.. .+.+...+.|++.| . +.++..|. .+|.=--+-..++..++|.||++| |.+..+
T Consensus 26 ~~~liv~d~~~~~---~~~~~v~~~l~~~~-~---~~~~~~~~~~~~~v~~~~~~~~~~~~d~iIaiG----GGs~~D 92 (339)
T cd08173 26 GRVLVVTGPTTKS---IAGKKVEALLEDEG-E---VDVVIVEDATYEEVEKVESSARDIGADFVIGVG----GGRVID 92 (339)
T ss_pred CeEEEEECCchHH---HHHHHHHHHHHhcC-C---eEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEeC----CchHHH
Confidence 5888888765433 56677778888887 3 33343343 344222222334557899999999 666555
No 254
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=59.57 E-value=32 Score=28.25 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=45.5
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCc--hhHHH
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDT--THYDA 154 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT--~H~e~ 154 (218)
||+|+..+-... ...-.+.|++.|.....++++.+.-.-+ .....+|||||.-|.- +.. ...++
T Consensus 1 ~i~il~~~~~~~-----~~~~~~~l~~~g~~~~~~~~~~~~~~~~-------~~~~~~~dgvil~Gg~--~~~~~~~~~~ 66 (188)
T cd01741 1 RILILQHDTPEG-----PGLFEDLLREAGAETIEIDVVDVYAGEL-------LPDLDDYDGLVILGGP--MSVDEDDYPW 66 (188)
T ss_pred CEEEEECCCCCC-----cchHHHHHHhcCCCCceEEEEecCCCCC-------CCCcccCCEEEECCCC--ccCCccCChH
Confidence 567776666543 2233444555564223566666554322 2234689999999873 222 11222
Q ss_pred HHHHHHHHHHHhchhcCCceEEEE
Q 027801 155 VANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 155 Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
+ .-...+++-.++.++|| +||
T Consensus 67 ~--~~~~~~i~~~~~~~~pi-lgi 87 (188)
T cd01741 67 L--KKLKELIRQALAAGKPV-LGI 87 (188)
T ss_pred H--HHHHHHHHHHHHCCCCE-EEE
Confidence 2 22444555556778885 444
No 255
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=59.52 E-value=83 Score=29.82 Aligned_cols=90 Identities=18% Similarity=0.214 Sum_probs=54.0
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE--eCCc---chHHHHHHHhhhcCCccEEEEEeeeeeCC
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW--VPGS---FEIGVVAQQLGKSGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~--VPGA---~ELP~aak~L~~~~~yDaVIaLG~VIrGe 148 (218)
-+.|||||.|.=-.-+ ...+..+.+.... -++.++. |=|. -||--+++++-..+ ||.|| |+||+
T Consensus 134 ~p~~I~viTs~~gAa~-----~D~~~~~~~r~p~-~~~~~~~~~vQG~~A~~~i~~al~~~~~~~-~Dvii----i~RGG 202 (438)
T PRK00286 134 FPKRIGVITSPTGAAI-----RDILTVLRRRFPL-VEVIIYPTLVQGEGAAASIVAAIERANARG-EDVLI----VARGG 202 (438)
T ss_pred CCCEEEEEeCCccHHH-----HHHHHHHHhcCCC-CeEEEecCcCcCccHHHHHHHHHHHhcCCC-CCEEE----EecCC
Confidence 4679999999855443 3444555555432 2344443 3344 45666666654434 89987 67988
Q ss_pred chhHHHHH---HHHHHHHHHhchhcCCceEEEE
Q 027801 149 TTHYDAVA---NSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 149 T~H~e~Va---~~vs~gLm~lsL~~~vPVifGV 178 (218)
=.--|+-| ..+++++. +..+||+.||
T Consensus 203 GS~eDL~~Fn~e~v~~ai~----~~~~Pvis~I 231 (438)
T PRK00286 203 GSLEDLWAFNDEAVARAIA----ASRIPVISAV 231 (438)
T ss_pred CCHHHhhccCcHHHHHHHH----cCCCCEEEec
Confidence 77655432 23333333 4589999999
No 256
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=58.78 E-value=50 Score=30.10 Aligned_cols=89 Identities=21% Similarity=0.262 Sum_probs=57.9
Q ss_pred EEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc-chHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHH
Q 027801 77 RFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGS-FEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDA 154 (218)
Q Consensus 77 RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA-~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~ 154 (218)
|+.++.-... ....++.++.+++.|+++|.. +.+. +... =+..-.++++.. .+||.||+.|= +=.
T Consensus 4 ~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~---~~~~-~t~~~g~a~~~a~~a~~-~~~D~via~GG----DGT---- 70 (301)
T COG1597 4 KALLIYNPTSGKGKAKKLLREVEELLEEAGHE---LSVR-VTEEAGDAIEIAREAAV-EGYDTVIAAGG----DGT---- 70 (301)
T ss_pred eEEEEEcccccccchhhHHHHHHHHHHhcCCe---EEEE-EeecCccHHHHHHHHHh-cCCCEEEEecC----cch----
Confidence 4444444433 356788999999999999985 3333 3333 367777777754 48999999994 322
Q ss_pred HHHHHHHHHHHhchhcCCceEEEEcCCCCH
Q 027801 155 VANSAASGVLSAGVNSGVPCIFGVLTCDNM 184 (218)
Q Consensus 155 Va~~vs~gLm~lsL~~~vPVifGVLT~~n~ 184 (218)
-++|+.||++. +.|. .|||-+-|.
T Consensus 71 -v~evingl~~~----~~~~-LgilP~GT~ 94 (301)
T COG1597 71 -VNEVANGLAGT----DDPP-LGILPGGTA 94 (301)
T ss_pred -HHHHHHHHhcC----CCCc-eEEecCCch
Confidence 34677777654 4444 888765443
No 257
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=58.30 E-value=70 Score=30.68 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=43.4
Q ss_pred HHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhc-CCceEEEEcCCCCHHHHHH---hhCCCCCCc
Q 027801 123 GVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNS-GVPCIFGVLTCDNMDQALN---RAGGKSGNK 198 (218)
Q Consensus 123 P~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~-~vPVifGVLT~~n~eQA~~---Rag~k~gnK 198 (218)
--+++.+++...+|+|+++=+ -.+-+.. ..+.+.|.++.-++ ++||....+...+.+++.+ ++|.-.-+-
T Consensus 359 ~~al~~l~~dp~vd~Vlv~~~-~~~~~~~-----~~~a~~l~~~~~~~~~KPvv~~~~gg~~~~~~~~~L~~~Gip~f~~ 432 (447)
T TIGR02717 359 AKALKTVAEDENVDGVVVVLT-PTAMTDP-----EEVAKGIIEGAKKSNEKPVVAGFMGGKSVDPAKRILEENGIPNYTF 432 (447)
T ss_pred HHHHHHHHcCCCCCEEEEEcc-CCccCCH-----HHHHHHHHHHHHhcCCCcEEEEecCCccHHHHHHHHHhCCCCccCC
Confidence 345566677788999994211 1111111 33556666665555 8999665554345555544 333333344
Q ss_pred HHHHHHHHHHH
Q 027801 199 GAEAALTAIEM 209 (218)
Q Consensus 199 G~EAA~aAleM 209 (218)
..+|+++...+
T Consensus 433 p~~A~~al~~~ 443 (447)
T TIGR02717 433 PERAVKALSAL 443 (447)
T ss_pred HHHHHHHHHHH
Confidence 55666554443
No 258
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=58.21 E-value=53 Score=30.29 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=40.6
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC-----cchH-HHHHHHhhhc--CCccEEEEEeeeeeC
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG-----SFEI-GVVAQQLGKS--GKYTAVLCIGAVVRG 147 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG-----A~EL-P~aak~L~~~--~~yDaVIaLG~VIrG 147 (218)
.|+.||....-. +.+.+...+.|++.|++ +.++..|+ .+|. =-+++.+.+. .+.|.||++| |
T Consensus 32 ~~~livtd~~~~---~~~~~~v~~~L~~~gi~---~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavG----G 101 (358)
T PRK00002 32 KKVAIVTDETVA---PLYLEKLRASLEAAGFE---VDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALG----G 101 (358)
T ss_pred CeEEEEECCchH---HHHHHHHHHHHHhcCCc---eEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEc----C
Confidence 588888865443 35777778888888874 45555565 2332 1222333222 2569999999 5
Q ss_pred CchhH
Q 027801 148 DTTHY 152 (218)
Q Consensus 148 eT~H~ 152 (218)
++..+
T Consensus 102 Gsv~D 106 (358)
T PRK00002 102 GVIGD 106 (358)
T ss_pred cHHHH
Confidence 55554
No 259
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=58.13 E-value=11 Score=34.58 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=37.4
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCC--cchHHHHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPG--SFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPG--A~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.|+.||..+.-.. ....+...+.|++.|++ +.++. +++ .+|-=.-+-..++..++|.||++|-
T Consensus 24 ~~~lvv~~~~~~~--~~~~~~v~~~L~~~~~~---~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG 89 (370)
T cd08551 24 RKALIVTDPGLVK--TGVLDKVIDSLKEAGIE---VVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG 89 (370)
T ss_pred CeEEEEeCcchhh--CccHHHHHHHHHHcCCe---EEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5889988765433 35666777888887763 33332 222 2222222222345678999999994
No 260
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=58.06 E-value=57 Score=30.12 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=43.4
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHH--hhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQ--LGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~--L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.|+.||..+.- .+...+...+.|++.|+. +.+..++|--....+-+- +++..++|.||++| |++..+
T Consensus 30 ~~~livtd~~~---~~~~~~~v~~~l~~~~~~---~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavG----GGsv~D 98 (366)
T PRK09423 30 KRALVIADEFV---LGIVGDRVEASLKEAGLT---VVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIG----GGKTLD 98 (366)
T ss_pred CEEEEEEChhH---HHHHHHHHHHHHHhCCCe---EEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEec----ChHHHH
Confidence 68888876543 234667778888888874 334467665555533222 23557899999999 555554
No 261
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=57.63 E-value=39 Score=29.24 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=47.0
Q ss_pred CCEEEEEE-cc--cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVV-AR--FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~-Sr--fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
.+|++||. |. +...+.|.=-....+.|++.|.....+....||--.| |=-+++.+++..++|.||+-|-.-- .
T Consensus 3 ~~~~aIItvSd~~~~G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~---g 79 (193)
T PRK09417 3 TLKIGLVSISDRASSGVYEDKGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGP---A 79 (193)
T ss_pred CcEEEEEEEcCcCCCCceeechHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCC---C
Confidence 46788763 22 3333333333344555677765322234467888776 4455556655568999999999833 3
Q ss_pred hHHHHHHHH
Q 027801 151 HYDAVANSA 159 (218)
Q Consensus 151 H~e~Va~~v 159 (218)
++|++-.++
T Consensus 80 ~rDvTpeAv 88 (193)
T PRK09417 80 RRDVTPEAT 88 (193)
T ss_pred CCCcHHHHH
Confidence 344444443
No 262
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=57.54 E-value=1.1e+02 Score=25.46 Aligned_cols=101 Identities=14% Similarity=0.157 Sum_probs=57.7
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC-C-cchHHH-HHHHhhhc-CCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-G-SFEIGV-VAQQLGKS-GKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP-G-A~ELP~-aak~L~~~-~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++...-+ .....-.+|..+.++++|.......+.... + .++-.. .++.++++ ..+|||+|..-
T Consensus 121 ~~~i~~l~~~~~-~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~av~~~~d------- 192 (273)
T cd01541 121 HRKIAGIFKADD-LQGVKRMKGFIKAYREHGIPFNPSNVITYTTEEKEEKLFEKIKEILKRPERPTAIVCYND------- 192 (273)
T ss_pred CcCEEEecCCCc-ccHHHHHHHHHHHHHHcCCCCChHHEEeccccchhhHHHHHHHHHHcCCCCCCEEEEcCc-------
Confidence 458888865433 233455689999999999753333332222 2 222222 33444443 56999998653
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~ 188 (218)
-++..+.+.+.+..++ +|==..|++.++.+.+.
T Consensus 193 ---~~a~g~~~al~~~g~~--~p~dv~vvg~d~~~~~~ 225 (273)
T cd01541 193 ---EIALRVIDLLKELGLK--IPEDISVVGFDDSYLSV 225 (273)
T ss_pred ---HHHHHHHHHHHHcCCC--CCCcEEEEEcCCcchhh
Confidence 3666677777665543 44334555666666554
No 263
>PRK13054 lipid kinase; Reviewed
Probab=57.40 E-value=1.4e+02 Score=26.58 Aligned_cols=73 Identities=15% Similarity=0.108 Sum_probs=44.5
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCc
Q 027801 94 LEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVP 173 (218)
Q Consensus 94 l~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vP 173 (218)
+....+.|.+.|.+ ++++...-+-+....++++.. .++|.||+.| ||-.=. ++..||++-..+..+|
T Consensus 20 ~~~~~~~l~~~g~~---~~v~~t~~~~~a~~~a~~~~~-~~~d~vvv~G----GDGTl~-----evv~~l~~~~~~~~~~ 86 (300)
T PRK13054 20 LREAVGLLREEGHT---LHVRVTWEKGDAARYVEEALA-LGVATVIAGG----GDGTIN-----EVATALAQLEGDARPA 86 (300)
T ss_pred HHHHHHHHHHcCCE---EEEEEecCCCcHHHHHHHHHH-cCCCEEEEEC----CccHHH-----HHHHHHHhhccCCCCc
Confidence 34456678888874 666665555556666777654 4599999888 554433 3457776544333344
Q ss_pred eEEEEcCC
Q 027801 174 CIFGVLTC 181 (218)
Q Consensus 174 VifGVLT~ 181 (218)
+|||-.
T Consensus 87 --lgiiP~ 92 (300)
T PRK13054 87 --LGILPL 92 (300)
T ss_pred --EEEEeC
Confidence 666643
No 264
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=57.21 E-value=54 Score=28.39 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=46.1
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..||+++.. +....+.+.++..+.|++.|+.. ....++ ++.-+..-.+.++. ..+.|+|+..+.
T Consensus 134 ~~~v~~l~~--~~~~g~~~~~~~~~~~~~~G~~v--~~~~~~~~~~~d~~~~v~~~~-~~~pd~v~~~~~ 198 (336)
T cd06360 134 YKKVVTVAW--DYAFGYEVVEGFKEAFTEAGGKI--VKELWVPFGTSDFASYLAQIP-DDVPDAVFVFFA 198 (336)
T ss_pred CCeEEEEec--cchhhHHHHHHHHHHHHHcCCEE--EEEEecCCCCcchHHHHHHHH-hcCCCEEEEecc
Confidence 468999975 44467778889999999999852 333344 47788888888885 456899886544
No 265
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=56.89 E-value=25 Score=33.17 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=39.9
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEE-EeCCc--chHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV-WVPGS--FEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv-~VPGA--~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.|+.||..++=.. ..+++...+.|++.|+. +.++ .|.+- .|.=.-+-.+++..++|.||++| |....+
T Consensus 50 ~~~lvv~~~~~~~--~g~~~~v~~~L~~~gi~---~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavG----GGS~iD 120 (395)
T PRK15454 50 KHLFVMADSFLHQ--AGMTAGLTRSLAVKGIA---MTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFG----GGSVLD 120 (395)
T ss_pred CEEEEEcCcchhh--CccHHHHHHHHHHcCCe---EEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeC----ChHHHH
Confidence 4677776654222 35567788888888874 4444 23221 12112222335678999999999 555544
No 266
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=56.67 E-value=16 Score=34.09 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=40.4
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCc--chHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGS--FEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA--~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.|+.||..+.-.. ..+++...+.|++.|+. +.++. |..- +|.---+-.+++..++|.||++| |.+..+
T Consensus 31 ~~~lvvtd~~~~~--~g~~~~v~~~L~~~g~~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiG----GGS~iD 101 (382)
T PRK10624 31 KKALIVTDKTLVK--CGVVAKVTDVLDAAGLA---YEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIG----GGSPQD 101 (382)
T ss_pred CEEEEEeCcchhh--CcchHHHHHHHHHCCCe---EEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeC----ChHHHH
Confidence 5888888763222 13677778888888874 44442 3222 22222222344667899999999 455444
No 267
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=56.58 E-value=69 Score=29.33 Aligned_cols=67 Identities=13% Similarity=0.263 Sum_probs=41.1
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc---chHHHH---HHHhhhc--CCccEEEEEeeeeeC
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS---FEIGVV---AQQLGKS--GKYTAVLCIGAVVRG 147 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA---~ELP~a---ak~L~~~--~~yDaVIaLG~VIrG 147 (218)
.|+.||....-. +...+...+.|++.|+. +.++.+|+. -.+-.+ ++.+.+. .+.|.||++| |
T Consensus 25 ~~~livtd~~~~---~~~~~~l~~~L~~~g~~---~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiG----G 94 (345)
T cd08195 25 SKILIVTDENVA---PLYLEKLKAALEAAGFE---VEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALG----G 94 (345)
T ss_pred CeEEEEECCchH---HHHHHHHHHHHHhcCCc---eEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEEC----C
Confidence 588888764433 35677778888888874 566667762 223222 2233222 3449999999 5
Q ss_pred CchhH
Q 027801 148 DTTHY 152 (218)
Q Consensus 148 eT~H~ 152 (218)
++..+
T Consensus 95 Gsv~D 99 (345)
T cd08195 95 GVVGD 99 (345)
T ss_pred hHHHh
Confidence 65554
No 268
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=56.57 E-value=1.1e+02 Score=25.06 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=39.3
Q ss_pred cCHHHHHHHHHHHHHHHHHCC-CCCCCeEEEEeCCc---chHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHH
Q 027801 85 FNELVTKLLLEGALETFKKYS-VKEENIDVVWVPGS---FEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAA 160 (218)
Q Consensus 85 fn~~It~~Ll~gA~~~L~~~G-v~~e~I~vv~VPGA---~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs 160 (218)
+...+...+ +-|.+.+.+.| +....++++..-.. -+..-+++.|.+..++|+||..++ + ...
T Consensus 15 ~~~~~~~~~-~~a~~~~n~~~g~~g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~-----~--------~~~ 80 (299)
T cd04509 15 YGAFRLAGA-QLAVEEINAKGGIPGRKLELVIYDDQSDPARALAAARRLCQQEGVDALVGPVS-----S--------GVA 80 (299)
T ss_pred cCHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEecCCCCHHHHHHHHHHHhcccCceEEEcCCC-----c--------HHH
Confidence 444433333 33445554432 33234555443332 234455566766667888764332 1 122
Q ss_pred HHHHHhchhcCCceEEEE
Q 027801 161 SGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 161 ~gLm~lsL~~~vPVifGV 178 (218)
..+.++.-+.++|++..-
T Consensus 81 ~~~~~~~~~~~iP~i~~~ 98 (299)
T cd04509 81 LAVAPVAEALKIPLISPG 98 (299)
T ss_pred HHHHHHHhhCCceEEecc
Confidence 344555556788887754
No 269
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=56.47 E-value=1.3e+02 Score=29.04 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=57.3
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
.+.|++.|+++..+.++ ||.-+ +...|.++.++|.|.- .|.+..-..|.+.+...+..+.++.+=---.-
T Consensus 194 ~~~~~~aGlP~gvv~~v--~g~~~---~~~~l~~~~~v~~v~f-----tGs~~~g~~v~~~aa~~~~~~~lElGGk~p~i 263 (480)
T cd07111 194 AEICAEAGLPPGVLNIV--TGNGS---FGSALANHPGVDKVAF-----TGSTEVGRALRRATAGTGKKLSLELGGKSPFI 263 (480)
T ss_pred HHHHHhcCCCcccEEEE--eCCch---HHHHHhcCCCcCEEEE-----ECCHHHHHHHHHHHhccCCcEEEEcCCCceEE
Confidence 45678889886555554 56434 3567777788998874 56778888888888887777777765333333
Q ss_pred EcCCCCHHHHHHhh
Q 027801 178 VLTCDNMDQALNRA 191 (218)
Q Consensus 178 VLT~~n~eQA~~Ra 191 (218)
|.-..|.+.|.+++
T Consensus 264 V~~daDl~~aa~~i 277 (480)
T cd07111 264 VFDDADLDSAVEGI 277 (480)
T ss_pred ECCCCCHHHHHHHH
Confidence 44556788876654
No 270
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=56.31 E-value=46 Score=30.20 Aligned_cols=79 Identities=19% Similarity=0.061 Sum_probs=43.7
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhcCCccEEEEEeeeeeCCchhH-
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGAVVRGDTTHY- 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~~~yDaVIaLG~VIrGeT~H~- 152 (218)
+.|+.||....- .+...+.|++.+.. .+..+..|+ .+-.- +.+.+.+.++.|.||++| |.+..+
T Consensus 25 ~~r~livtd~~~-------~~~~~~~L~~~~~~--~~~~~~~~~-~~~~~~i~~~~~~~~~~d~iIaiG----GGsv~D~ 90 (331)
T cd08174 25 FGRVAVVSGPGV-------GEQVAESLKTSFSA--EVEAVEEVS-NSDAEEIGARARSIPNVDAVVGIG----GGKVIDV 90 (331)
T ss_pred CCceEEEECCcH-------HHHHHHHHHhccCc--eEEEecCCC-ccCHHHHHHHHHhccCCCEEEEeC----CcHHHHH
Confidence 358888886542 45667777776651 233332222 22222 333343334799999999 565554
Q ss_pred -HHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 153 -DAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 153 -e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
.+++. ..++|++.-=
T Consensus 91 aK~vA~-----------~~~~p~i~vP 106 (331)
T cd08174 91 AKYAAF-----------LRGIPLSVPT 106 (331)
T ss_pred HHHHHh-----------hcCCCEEEec
Confidence 33332 3578876543
No 271
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=56.11 E-value=99 Score=25.37 Aligned_cols=82 Identities=11% Similarity=0.137 Sum_probs=47.9
Q ss_pred HHHHHHC-CCCCCCeEEEEeCCcc-hHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceE
Q 027801 98 LETFKKY-SVKEENIDVVWVPGSF-EIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 98 ~~~L~~~-Gv~~e~I~vv~VPGA~-ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
-+.|+++ |+. +..+ +.|.. --|-++..+ +.+++|.||-+---. |.-.| ..-...|.+..+++++|++
T Consensus 42 a~~L~~~~Gi~---v~~v-i~~~~gg~~~i~~~I-~~g~i~lVInt~dp~-~~~~~-----~~D~~~IRR~Av~~~IP~~ 110 (142)
T PRK05234 42 GGLIQEATGLD---VTRL-LSGPLGGDQQIGALI-AEGKIDMLIFFRDPL-TAQPH-----DPDVKALLRLADVWNIPVA 110 (142)
T ss_pred HHHHHhccCCe---eEEE-EcCCCCCchhHHHHH-HcCceeEEEEecCCC-CCCcc-----cchHHHHHHHHHHcCCCEE
Confidence 4456677 774 3333 33311 126665555 789999999873101 33333 2224578899999999987
Q ss_pred EEEcCCCCHHHHHHh
Q 027801 176 FGVLTCDNMDQALNR 190 (218)
Q Consensus 176 fGVLT~~n~eQA~~R 190 (218)
--+=|..-.-+|+.|
T Consensus 111 T~l~tA~a~~~al~~ 125 (142)
T PRK05234 111 TNRATADFLISSLLF 125 (142)
T ss_pred cCHHHHHHHHHHHhc
Confidence 555444444445544
No 272
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=56.11 E-value=34 Score=30.83 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=35.7
Q ss_pred HHHhhhcCCccEEEEEeeeeeCCchhH--HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 126 AQQLGKSGKYTAVLCIGAVVRGDTTHY--DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 126 ak~L~~~~~yDaVIaLG~VIrGeT~H~--e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
++.+++.+..||++++|.- ||-... |-- ..+.+...+.. ...+||+.||-.. +.+++++++
T Consensus 27 i~~~i~~G~v~gi~~~Gst--GE~~~Lt~eEr-~~~~~~~~~~~-~~~~pvi~gv~~~-~t~~~i~la 89 (290)
T TIGR00683 27 IRHNIDKMKVDGLYVGGST--GENFMLSTEEK-KEIFRIAKDEA-KDQIALIAQVGSV-NLKEAVELG 89 (290)
T ss_pred HHHHHhCCCcCEEEECCcc--cccccCCHHHH-HHHHHHHHHHh-CCCCcEEEecCCC-CHHHHHHHH
Confidence 3445544449999999987 765443 111 11222223322 3479999999864 556666654
No 273
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=55.55 E-value=48 Score=25.85 Aligned_cols=90 Identities=21% Similarity=0.158 Sum_probs=45.9
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC-----cchHHHHHHH-hhh--cCCccEEEEEeeeee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG-----SFEIGVVAQQ-LGK--SGKYTAVLCIGAVVR 146 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG-----A~ELP~aak~-L~~--~~~yDaVIaLG~VIr 146 (218)
+.||+|+...=- ...-+.+..+.|...|. ++.++..-| ..-+.+.... +.+ ...||++|..|
T Consensus 1 ~~~v~ill~~g~---~~~e~~~~~~~~~~a~~---~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpG---- 70 (142)
T cd03132 1 GRKVGILVADGV---DAAELSALKAALKAAGA---NVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPG---- 70 (142)
T ss_pred CCEEEEEEcCCc---CHHHHHHHHHHHHHCCC---EEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECC----
Confidence 357888885422 22335577888888886 467766433 2222122221 211 23599999988
Q ss_pred CCchhHHHHH-HHHHHHHHHhchhcCCceE
Q 027801 147 GDTTHYDAVA-NSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 147 GeT~H~e~Va-~~vs~gLm~lsL~~~vPVi 175 (218)
|.-....+-. ..+.+-|.+ ..+.+.||+
T Consensus 71 g~~~~~~~~~~~~l~~~l~~-~~~~~~~I~ 99 (142)
T cd03132 71 GAEAAFALAPSGRALHFVTE-AFKHGKPIG 99 (142)
T ss_pred CccCHHHHccChHHHHHHHH-HHhcCCeEE
Confidence 3222222222 233333433 335577765
No 274
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=54.95 E-value=79 Score=28.49 Aligned_cols=98 Identities=19% Similarity=0.269 Sum_probs=54.3
Q ss_pred CCEEEEEEc-ccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 75 GLRFALVVA-RFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 75 ~~RIaIV~S-rfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
.+||+|++. -+|.+. ...+.|++.|+. ++++++-..-+.+ . .-.+||++|..|----|+...+.
T Consensus 3 ~~kvaVl~~pG~n~d~------e~~~Al~~aG~~---v~~v~~~~~~~~~---~---~l~~~DgLvipGGfs~gD~l~~g 67 (261)
T PRK01175 3 SIRVAVLRMEGTNCED------ETVKAFRRLGVE---PEYVHINDLAAER---K---SVSDYDCLVIPGGFSAGDYIRAG 67 (261)
T ss_pred CCEEEEEeCCCCCCHH------HHHHHHHHCCCc---EEEEeeccccccc---c---chhhCCEEEECCCCCcccccccc
Confidence 468999987 667552 346788888875 5555543221111 1 12579999999964334433332
Q ss_pred HH-----HHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhC
Q 027801 154 AV-----ANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG 192 (218)
Q Consensus 154 ~V-----a~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag 192 (218)
.+ ...+.+.|.+. ++.++||. ||= +=-|.+..+|
T Consensus 68 ~~~~~~l~~~l~~~Ik~f-~~~gkpVL-GIC---nG~QlLa~~G 106 (261)
T PRK01175 68 AIFAARLKAVLRKDIEEF-IDEGYPII-GIC---NGFQVLVELG 106 (261)
T ss_pred hhhHHHHHHHHHHHHHHH-HHCCCeEE-EEC---HHHHHHHHCC
Confidence 11 11122334443 56788864 432 3446666665
No 275
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=54.86 E-value=1e+02 Score=25.19 Aligned_cols=89 Identities=20% Similarity=0.208 Sum_probs=55.1
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC-CcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-GSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP-GA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
..||+++..... -...+.++..+.+++.|+. ......+| +.-+.--.++++.+ .+.|+|++.+.-
T Consensus 136 ~~~v~iv~~~~~--~~~~~~~~~~~~~~~~g~~--i~~~~~~~~~~~~~~~~~~~l~~-~~~~~v~~~~~~--------- 201 (299)
T cd04509 136 WKKVAILYDDDS--YGRGLLEAFKAAFKKKGGT--VVGEEYYPLGTTDFTSLLQKLKA-AKPDVIVLCGSG--------- 201 (299)
T ss_pred CcEEEEEecCch--HHHHHHHHHHHHHHHcCCE--EEEEecCCCCCccHHHHHHHHHh-cCCCEEEEcccc---------
Confidence 458999987655 4567788999999999864 12223333 43344345556543 458988876541
Q ss_pred HHHHHHHHHHHHhchhcCCceEEE
Q 027801 154 AVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
-.+..+.+.+.+..+..+.|++..
T Consensus 202 ~~~~~~~~~~~~~g~~~~~~~i~~ 225 (299)
T cd04509 202 EDAATILKQAAEAGLTGGYPILGI 225 (299)
T ss_pred hHHHHHHHHHHHcCCCCCCcEEec
Confidence 245566677777776534555543
No 276
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=54.82 E-value=66 Score=29.33 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=46.1
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.|++||...+- .-+.+.+...+.|++.|.+ ...+....|+....--.+.++ +..+.|+|+..|.
T Consensus 149 k~v~ii~~~~~--yg~~~~~~~~~~l~~~G~~-~~~~~~~~~~~~~~~~~v~~i-~~~~~d~v~~~~~ 212 (366)
T COG0683 149 KRVAIIGDDYA--YGEGLADAFKAALKALGGE-VVVEEVYAPGDTDFSALVAKI-KAAGPDAVLVGGY 212 (366)
T ss_pred cEEEEEeCCCC--cchhHHHHHHHHHHhCCCe-EEEEEeeCCCCCChHHHHHHH-HhcCCCEEEECCC
Confidence 58888876543 3356778889999999997 455577899998866666666 3567886665554
No 277
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=54.53 E-value=68 Score=25.32 Aligned_cols=90 Identities=14% Similarity=0.243 Sum_probs=48.7
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCC-----CCCCCeEEE---EeCCc--chHHHHHHHhhhcCCccEEEEEeeeee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYS-----VKEENIDVV---WVPGS--FEIGVVAQQLGKSGKYTAVLCIGAVVR 146 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~G-----v~~e~I~vv---~VPGA--~ELP~aak~L~~~~~yDaVIaLG~VIr 146 (218)
|||||.=+=+++..-. .+|.+.+.+.- ++.++++++ +-.|. -.+-.-+++|. ..+.| +|-|+.=++
T Consensus 1 KI~Ii~C~~~~~~C~g--~~C~ka~~~r~g~F~~y~~~~~elvgf~~CgGCpg~~~~~~~~~l~-~~~~d-~IHlssC~~ 76 (107)
T PF08821_consen 1 KIAIIRCEKTEDRCPG--TGCFKAFNERKGAFARYDDEDVELVGFFTCGGCPGRKLVRRIKKLK-KNGAD-VIHLSSCMV 76 (107)
T ss_pred CEEEEEcchhhCcCcc--hHHHHHHHhccCccccCCCCCeEEEEEeeCCCCChhHHHHHHHHHH-HCCCC-EEEEcCCEe
Confidence 4666654444443322 45555555432 222234444 33442 13444456664 67799 555555455
Q ss_pred CCc-----hhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 147 GDT-----THYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 147 GeT-----~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
.+. +|+|.+.+.+... +|+||+.|
T Consensus 77 ~~~~~~~CP~~~~~~~~I~~~-------~gi~VV~G 105 (107)
T PF08821_consen 77 KGNPHGPCPHIDEIKKIIEEK-------FGIEVVEG 105 (107)
T ss_pred cCCCCCCCCCHHHHHHHHHHH-------hCCCEeee
Confidence 433 8888887766543 38888876
No 278
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=53.97 E-value=69 Score=28.62 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=45.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC-CcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-GSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP-GA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..|++|+.. +....+.+.+.+.+.|++.|++ -+...++| |.-+.--.+.++.+ .+.|+|+..+.
T Consensus 133 ~k~vaii~~--d~~~g~~~~~~~~~~~~~~G~~--vv~~~~~~~~~~D~~~~v~~l~~-~~pd~v~~~~~ 197 (348)
T cd06355 133 GKRFYLVGS--DYVYPRTANKILKAQLESLGGE--VVGEEYLPLGHTDFQSIINKIKA-AKPDVVVSTVN 197 (348)
T ss_pred CCeEEEECC--cchHHHHHHHHHHHHHHHcCCe--EEeeEEecCChhhHHHHHHHHHH-hCCCEEEEecc
Confidence 468999865 3455667888889999999975 34445566 88887777777754 46899887543
No 279
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=53.87 E-value=93 Score=26.94 Aligned_cols=62 Identities=11% Similarity=0.164 Sum_probs=38.1
Q ss_pred EEEEEEcccC---HHHHHHHHHHHHHHHHHCC--CCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEE
Q 027801 77 RFALVVARFN---ELVTKLLLEGALETFKKYS--VKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVL 139 (218)
Q Consensus 77 RIaIV~Srfn---~~It~~Ll~gA~~~L~~~G--v~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVI 139 (218)
|||++.. +. ......+++++...+++.| +.-..|+++..-...+.. -++++|+..+++|+||
T Consensus 1 ~IG~l~p-~sG~~a~~g~~~~~g~~~a~~~~~~~i~G~~i~l~~~D~~~~~~~~~~~~~~lv~~~~v~~ii 70 (336)
T cd06360 1 KVGLLLP-YSGTYAALGEDITRGFELALQEAGGKLGGREVEFVVEDDEAKPDVAVEKARKLIEQDKVDVVV 70 (336)
T ss_pred CeEEEEe-cccchHhhcHhHHHHHHHHHHHhCCCcCCEEEEEEEcCCCCChHHHHHHHHHHHHHhCCcEEE
Confidence 5666665 22 2233577788888887764 333456777666555433 3456777667899865
No 280
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=53.71 E-value=29 Score=32.17 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=41.9
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEE-EeCCcchHHHH--HHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV-WVPGSFEIGVV--AQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv-~VPGA~ELP~a--ak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.|+.||..+.-.. ...+++...+.|++.|+. +.++ .|++--.+-.+ +-.+++..++|.||++| |....+
T Consensus 26 ~r~livt~~~~~~-~~g~~~~v~~~L~~~~~~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavG----GGS~iD 97 (380)
T cd08185 26 KKALIVTGNGSSK-KTGYLDRVIELLKQAGVE---VVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLG----GGSSMD 97 (380)
T ss_pred CeEEEEeCCCchh-hccHHHHHHHHHHHcCCe---EEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeC----CccHHH
Confidence 6899999765411 135667777888888874 3333 23322222222 22345667899999999 555554
No 281
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=53.67 E-value=30 Score=30.30 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=25.5
Q ss_pred CCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEee
Q 027801 106 VKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 106 v~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~ 143 (218)
+....|....+|=+|+ ..-.+..+++..++|+||++|.
T Consensus 32 ~~~~~i~~~~lPV~y~~~~~~l~~~l~~~~Pd~vih~G~ 70 (215)
T PRK13197 32 IGGAEIIKRQLPTVFGKSAEVLKEAIEEVQPDAVICIGQ 70 (215)
T ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHhCCCEEEEecc
Confidence 3334577778888873 4445555556667888888884
No 282
>PF03846 SulA: Cell division inhibitor SulA; InterPro: IPR004596 All proteins in this family for which the functions are known are cell division inhibitors. In Escherichia coli, SulA is one of the SOS regulated genes. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, SulA binds a polymerisation-competent form of ftsZ in a 1:1 ratio, thus inhibiting ftsZ polymerisation and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division. The expression of SulA is repressed by LexA. The N terminus of SulA may be involved in recognising the cell division apparatus.; GO: 0009432 SOS response, 0051782 negative regulation of cell division, 0009276 Gram-negative-bacterium-type cell wall; PDB: 1OFU_X 1OFT_A.
Probab=53.51 E-value=37 Score=27.84 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=34.4
Q ss_pred HHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 97 ALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
-...|++.|+.-+.|-.+.-.+..+-=.++.+.+++|+|.+||+
T Consensus 73 s~~wL~~aGl~~~kvl~l~~~~~~~tl~amekAL~sGn~s~Vl~ 116 (119)
T PF03846_consen 73 SRQWLQQAGLPLEKVLQLHPRNPQSTLEAMEKALRSGNYSAVLG 116 (119)
T ss_dssp -HHHHHHTT--CCCEEEE--SSTTHHHHHHHHHHHHT-EEEEEE
T ss_pred CHHHHHHcCCChhHeEEeCCCCcccHHHHHHHHHHhCCCeEEEE
Confidence 35789999999999999999999998888888889999999986
No 283
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=53.50 E-value=58 Score=28.11 Aligned_cols=87 Identities=14% Similarity=0.042 Sum_probs=53.1
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
...||+++... ........++..+.+++.|+.. ...... ++.-+.--.+.++. ..+.|+|+|.+--.
T Consensus 132 g~~~vail~~~--~~~~~~~~~~~~~~~~~~G~~v--~~~~~~~~~~~d~~~~~~~l~-~~~pdaIi~~~~~~------- 199 (312)
T cd06333 132 GVKTVAFIGFS--DAYGESGLKELKALAPKYGIEV--VADERYGRTDTSVTAQLLKIR-AARPDAVLIWGSGT------- 199 (312)
T ss_pred CCCEEEEEecC--cHHHHHHHHHHHHHHHHcCCEE--EEEEeeCCCCcCHHHHHHHHH-hCCCCEEEEecCCc-------
Confidence 45689999764 3456678889999999999852 222223 56555444444443 34689999876421
Q ss_pred HHHHHHHHHHHHHhchhcCCceEE
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
.+-.+.+.+.+..+ ..|++.
T Consensus 200 --~~~~~~~~l~~~g~--~~p~~~ 219 (312)
T cd06333 200 --PAALPAKNLRERGY--KGPIYQ 219 (312)
T ss_pred --HHHHHHHHHHHcCC--CCCEEe
Confidence 22335566666554 467653
No 284
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=53.44 E-value=68 Score=28.50 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=50.1
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH----HHHHHHhhh---cCCccEEEEEeeeee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI----GVVAQQLGK---SGKYTAVLCIGAVVR 146 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL----P~aak~L~~---~~~yDaVIaLG~VIr 146 (218)
.-.||+|+ +-|-+++.+.+ .+.|++.|++--++.-+.....+++ |-.+..+++ ..+.|||+..+.=.|
T Consensus 119 g~~RIalv-TPY~~~v~~~~----~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLr 193 (239)
T TIGR02990 119 GVRRISLL-TPYTPETSRPM----AQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALR 193 (239)
T ss_pred CCCEEEEE-CCCcHHHHHHH----HHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCch
Confidence 34588876 55888888666 5567777864211111111111121 333333333 568999998865544
Q ss_pred CCchhHHHHHHHHHHHHHHhchhcCCceEE
Q 027801 147 GDTTHYDAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 147 GeT~H~e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
...-+-++.-+.|+||+-
T Consensus 194 ------------t~~vi~~lE~~lGkPVls 211 (239)
T TIGR02990 194 ------------AATCAQRIEQAIGKPVVT 211 (239)
T ss_pred ------------hHHHHHHHHHHHCCCEEE
Confidence 344566788889999964
No 285
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=53.35 E-value=17 Score=33.73 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=41.4
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEE-EeCCc--chHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV-WVPGS--FEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv-~VPGA--~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.|+.||..+.-.. ...++...+.|++.|+. +.++ .|++- +|.-.-+-..++..++|.||++| |.+..+
T Consensus 24 ~r~livt~~~~~~--~g~~~~v~~~L~~~gi~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiG----GGS~~D 94 (375)
T cd08194 24 KRPLIVTDKVMVK--LGLVDKLTDSLKKEGIE---SAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALG----GGSPID 94 (375)
T ss_pred CeEEEEcCcchhh--cchHHHHHHHHHHCCCe---EEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeC----CchHHH
Confidence 5888888654321 23667778888888874 4444 23332 22222233334678999999999 666555
No 286
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=53.34 E-value=1.1e+02 Score=25.82 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=33.0
Q ss_pred HHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHH-HHHHHHHHhchhcCCceE
Q 027801 97 ALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVAN-SAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~-~vs~gLm~lsL~~~vPVi 175 (218)
..+.|++.|.. ++++++.- | ..+ .+||+||..|- . .+...++..+ ....-|.+ ..+.++| +
T Consensus 19 ~~~~l~~~g~~---~~~~~~~~----~---~~l---~~~d~iii~GG--~-~~~~~~~~~~~~~~~~i~~-~~~~~~p-i 80 (200)
T PRK13527 19 LKRALDELGID---GEVVEVRR----P---GDL---PDCDALIIPGG--E-STTIGRLMKREGILDEIKE-KIEEGLP-I 80 (200)
T ss_pred HHHHHHhcCCC---eEEEEeCC----h---HHh---ccCCEEEECCC--c-HHHHHHHHhhccHHHHHHH-HHHCCCe-E
Confidence 34456677863 66666642 2 122 36999998884 1 1222222222 12333333 3467888 4
Q ss_pred EEE
Q 027801 176 FGV 178 (218)
Q Consensus 176 fGV 178 (218)
+||
T Consensus 81 lGI 83 (200)
T PRK13527 81 LGT 83 (200)
T ss_pred EEE
Confidence 555
No 287
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=53.18 E-value=48 Score=31.85 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=61.1
Q ss_pred CCCEEEEEEcccCHH-----------HHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH-HHHHHHhhhcCCccEEEEE
Q 027801 74 EGLRFALVVARFNEL-----------VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI-GVVAQQLGKSGKYTAVLCI 141 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~-----------It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL-P~aak~L~~~~~yDaVIaL 141 (218)
...||+|+.+- ++. |.|.-.---...|+++|+. .+....||--.|. =-+++.+. .++|.||+-
T Consensus 192 ~~prV~IisTG-dEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~--v~~~~~v~Dd~~~i~~~l~~a~--~~~DlIItT 266 (419)
T PRK14690 192 RPLRVAVLSTG-DELVEPGALAEVGQIYDANRPMLLALARRWGHA--PVDLGRVGDDRAALAARLDRAA--AEADVILTS 266 (419)
T ss_pred cCCEEEEEEcc-ccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCE--EEEEeeeCCCHHHHHHHHHHhC--ccCCEEEEc
Confidence 46799999774 111 1111111223447778874 4566678887774 22333332 579999999
Q ss_pred eeeeeCCchhHHHHHHHHHHH----HHHhchhcCCceEEEEc
Q 027801 142 GAVVRGDTTHYDAVANSAASG----VLSAGVNSGVPCIFGVL 179 (218)
Q Consensus 142 G~VIrGeT~H~e~Va~~vs~g----Lm~lsL~~~vPVifGVL 179 (218)
|-+-.|+ +||+...+.+. +-.+.++=|.|+.+|.+
T Consensus 267 GG~S~G~---~D~v~~~l~~~G~~~~~~v~mkPGkp~~~~~~ 305 (419)
T PRK14690 267 GGASAGD---EDHVSALLREAGAMQSWRIALKPGRPLALGLW 305 (419)
T ss_pred CCccCCC---cchHHHHHHhcCCEEEcceeecCCCceEEEEE
Confidence 9886666 55555555442 35678888889999876
No 288
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=52.98 E-value=97 Score=27.03 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=45.9
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC---cchHHHHHHHhhhcCCccEEEEEeee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG---SFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG---A~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
.-.||++|... ......+.+...+.+++.|+. -.....+|- .-+..-.++++..+ +.|.||+.+.-
T Consensus 159 ~~~~v~~l~~~--~~~g~~~~~~~~~~~~~~gi~--v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vvv~~~~~ 227 (348)
T cd06350 159 GWTWVGLVYSD--DDYGRSGLSDLEEELEKNGIC--IAFVEAIPPSSTEEDIKRILKKLKSS-TARVIVVFGDE 227 (348)
T ss_pred CCeEEEEEEec--chhHHHHHHHHHHHHHHCCCc--EEEEEEccCCCcHHHHHHHHHHHHhC-CCcEEEEEeCc
Confidence 34589999874 345677888889999999975 334455654 35666777777544 45999887763
No 289
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=52.95 E-value=26 Score=32.36 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=41.8
Q ss_pred ccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEE
Q 027801 68 GFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (218)
Q Consensus 68 ~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaL 141 (218)
.++.|-++.|||+....+... |+. ..|++.|+++++++++.++- |-+ ...+.+++.||.+..
T Consensus 99 ~svaDLKGKkIav~~gs~~~~----ll~---~aL~~aGL~~~DV~~v~~~~----~d~-~aAl~~G~VDAa~~~ 160 (328)
T TIGR03427 99 KSLADLKGQKVNLVELSVSHY----LLA---RALESVGLSEKDVKVVNTSD----ADI-VAAFITKDVTAVVTW 160 (328)
T ss_pred CCHHHcCCCEEeccCCChHHH----HHH---HHHHHcCCCHHHeEEEeCCh----HHH-HHHHhcCCCcEEEEc
Confidence 444467899999866555443 333 34778899988899887763 222 334478999998753
No 290
>PRK13337 putative lipid kinase; Reviewed
Probab=52.84 E-value=95 Score=27.74 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=55.1
Q ss_pred EEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHH
Q 027801 77 RFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAV 155 (218)
Q Consensus 77 RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~V 155 (218)
|++||+-.-- ..-..+.++.....|.++|.+ ++++.....-+..-.+++++ ..++|.||+.| ||-.-.
T Consensus 3 r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~---~~~~~t~~~~~a~~~a~~~~-~~~~d~vvv~G----GDGTl~--- 71 (304)
T PRK13337 3 RARIIYNPTSGRELFKKNLPDVLQKLEQAGYE---TSAHATTGPGDATLAAERAV-ERKFDLVIAAG----GDGTLN--- 71 (304)
T ss_pred eEEEEECCcccchhHHHHHHHHHHHHHHcCCE---EEEEEecCCCCHHHHHHHHH-hcCCCEEEEEc----CCCHHH---
Confidence 5666653221 111223445567778888874 77888888888888888775 35589999988 665543
Q ss_pred HHHHHHHHHHhchhcCCceEEEEcCC
Q 027801 156 ANSAASGVLSAGVNSGVPCIFGVLTC 181 (218)
Q Consensus 156 a~~vs~gLm~lsL~~~vPVifGVLT~ 181 (218)
++..||++. +.++-.|||-.
T Consensus 72 --~vv~gl~~~----~~~~~lgiiP~ 91 (304)
T PRK13337 72 --EVVNGIAEK----ENRPKLGIIPV 91 (304)
T ss_pred --HHHHHHhhC----CCCCcEEEECC
Confidence 455777643 22334677654
No 291
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=52.61 E-value=39 Score=25.18 Aligned_cols=72 Identities=22% Similarity=0.176 Sum_probs=43.3
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcC
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSG 171 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~ 171 (218)
+|--+.|+++|+. ...+++..+.=|.|= -+..+++.+++|.||..=-- ..+... .-...|.++..+++
T Consensus 20 ~gTa~~L~~~Gi~--~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~------~~~~~~-~dg~~irr~a~~~~ 90 (95)
T PF02142_consen 20 EGTAKFLKEHGIE--VTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYP------FSDQEH-TDGYKIRRAAVEYN 90 (95)
T ss_dssp HHHHHHHHHTT----EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--T------HHHHHT-HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHcCCC--ceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCC------Cccccc-CCcHHHHHHHHHcC
Confidence 3677889999985 244455555544444 24555688999988875332 111111 34567889999999
Q ss_pred CceE
Q 027801 172 VPCI 175 (218)
Q Consensus 172 vPVi 175 (218)
+|..
T Consensus 91 Ip~~ 94 (95)
T PF02142_consen 91 IPLF 94 (95)
T ss_dssp SHEE
T ss_pred CCCc
Confidence 9974
No 292
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=52.54 E-value=18 Score=33.60 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=37.0
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEE-EeCCc--chHHHHHHHhhhcCCccEEEEEe
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV-WVPGS--FEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv-~VPGA--~ELP~aak~L~~~~~yDaVIaLG 142 (218)
.|+.||..+.-.. ..+++...+.|++.|+. +.++ .|+.- +|.---+-.+++..++|.||++|
T Consensus 27 ~~~lvvt~~~~~~--~g~~~~v~~~L~~~g~~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiG 91 (374)
T cd08189 27 KKVLIVTDKGLVK--LGLLDKVLEALEGAGIE---YAVYDGVPPDPTIENVEAGLALYRENGCDAILAVG 91 (374)
T ss_pred CeEEEEeCcchhh--cccHHHHHHHHHhcCCe---EEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5899998765322 23566777888888873 3333 23221 22222222334667899999999
No 293
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=52.46 E-value=46 Score=30.26 Aligned_cols=60 Identities=20% Similarity=0.326 Sum_probs=37.0
Q ss_pred HHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 127 QQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 127 k~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
+.++ ..++||++++|.- ||-.+... =-..+.+...+. ....+||+.||-+ .+.+++++++
T Consensus 36 ~~li-~~Gv~Gi~v~Gst--GE~~~Lt~eEr~~v~~~~~~~-~~grvpvi~Gv~~-~~t~~ai~~a 96 (309)
T cd00952 36 ERLI-AAGVDGILTMGTF--GECATLTWEEKQAFVATVVET-VAGRVPVFVGATT-LNTRDTIART 96 (309)
T ss_pred HHHH-HcCCCEEEECccc--ccchhCCHHHHHHHHHHHHHH-hCCCCCEEEEecc-CCHHHHHHHH
Confidence 3443 3789999999987 77665411 011233333333 2467999999987 4446776665
No 294
>PRK10595 SOS cell division inhibitor; Provisional
Probab=52.30 E-value=40 Score=28.83 Aligned_cols=58 Identities=9% Similarity=0.024 Sum_probs=46.6
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
.+.-|..|...+-- ....|.+.|++.+.+-.+.....-|.=+++.+.++++.|.+|++
T Consensus 55 ~~rwilwI~PP~~p---------~~~~L~~~Gl~l~rvl~v~~~~~~d~Lwa~EqaLrsG~~~aVL~ 112 (164)
T PRK10595 55 QSRWQLWLTPQQKL---------SREWLQASGLPLTKVMQLSQLSPCHTVEAMERALRTGNYSVVLG 112 (164)
T ss_pred cCceEEEECCCCCC---------CHHHHHHcCCCcccEEEEecCCcHHHHHHHHHHHhhCCCcEEEE
Confidence 44567777777632 34578889999988888887888898899999999999999886
No 295
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=52.02 E-value=81 Score=28.76 Aligned_cols=67 Identities=15% Similarity=0.264 Sum_probs=41.4
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch------HHHHHHHhhhc--CCccEEEEEeeeeeC
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE------IGVVAQQLGKS--GKYTAVLCIGAVVRG 147 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E------LP~aak~L~~~--~~yDaVIaLG~VIrG 147 (218)
.|+.||....-. +...+...+.|++.|+. +.++.+++.-+ +--+++.+.+. .+.|.||++| |
T Consensus 21 ~~~livtd~~~~---~~~~~~v~~~L~~~g~~---~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavG----G 90 (344)
T TIGR01357 21 SKLVIITDETVA---DLYADKLLEALQALGYN---VLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALG----G 90 (344)
T ss_pred CeEEEEECCchH---HHHHHHHHHHHHhcCCc---eeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEc----C
Confidence 688888765443 34677788888888874 44455665332 22233333322 3469999999 5
Q ss_pred CchhH
Q 027801 148 DTTHY 152 (218)
Q Consensus 148 eT~H~ 152 (218)
++..+
T Consensus 91 Gsv~D 95 (344)
T TIGR01357 91 GVVGD 95 (344)
T ss_pred hHHHH
Confidence 65554
No 296
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.49 E-value=1.2e+02 Score=25.15 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=56.4
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhc-CCccEEEEEeeeeeCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKS-GKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~-~~yDaVIaLG~VIrGeT~H~ 152 (218)
..||+++.+.-.. ....-.+|..+.++++|..... .+++-..+ .--+++++++. .++|||+|.+-
T Consensus 115 ~~~i~~~~~~~~~-~~~~R~~gf~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d--------- 181 (263)
T cd06280 115 YRRIGGLFGNAST-TGAERRAGYEDAMRRHGLAPDA---RFVAPTAEAAEAALAAWLAAPERPEALVASNG--------- 181 (263)
T ss_pred CceEEEEeCCCCC-CHHHHHHHHHHHHHHcCCCCCh---hhcccCHHHHHHHHHHHhcCCCCCcEEEECCc---------
Confidence 4589998775333 3344568999999999976322 12221111 11234445544 46899988443
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.++..+.+++.+..+ .+|=-..|++.++...+
T Consensus 182 -~~a~g~~~~l~~~g~--~~p~di~iig~d~~~~~ 213 (263)
T cd06280 182 -LLLLGALRAVRAAGL--RIPQDLALAGFDNDPWT 213 (263)
T ss_pred -HHHHHHHHHHHHcCC--CCCCcEEEEEeCChhHH
Confidence 355566666666543 45655666676766544
No 297
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=51.02 E-value=19 Score=33.74 Aligned_cols=62 Identities=11% Similarity=0.050 Sum_probs=39.1
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCC--cchHHHHHHHhhhcCCccEEEEEe
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPG--SFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPG--A~ELP~aak~L~~~~~yDaVIaLG 142 (218)
.|+.||..++-+. ..+++...+.|++.|+. +.++. |.. .+|-=.-+-.+++..++|.||++|
T Consensus 32 ~~~livt~~~~~~--~g~~~~v~~~L~~~~i~---~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiG 96 (383)
T PRK09860 32 TRTLIVTDNMLTK--LGMAGDVQKALEERNIF---SVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLG 96 (383)
T ss_pred CEEEEEcCcchhh--CccHHHHHHHHHHcCCe---EEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 5888887764332 24667788888888864 33332 211 234333344455778999999999
No 298
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=50.64 E-value=58 Score=29.29 Aligned_cols=87 Identities=23% Similarity=0.203 Sum_probs=46.7
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc---chHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS---FEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA---~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.|+.||..+.-.. ...+...+.|++. + ++.++..++. +|-=.-+-..++..++|.||++| |.+..+
T Consensus 24 ~~~liv~~~~~~~---~~~~~v~~~l~~~-~---~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiG----GGs~~D 92 (332)
T cd07766 24 DRALVVSDEGVVK---GVGEKVADSLKKL-I---AVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVG----GGSTLD 92 (332)
T ss_pred CeEEEEeCCchhh---hHHHHHHHHHHhc-C---cEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeC----CchHHH
Confidence 5788887654333 5556666677765 4 3555543332 33222222233557899999999 555554
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcC
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLT 180 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT 180 (218)
++..++.... .++|++.-=-|
T Consensus 93 --~aK~ia~~~~-----~~~p~i~iPTt 113 (332)
T cd07766 93 --TAKAVAALLN-----RGLPIIIVPTT 113 (332)
T ss_pred --HHHHHHHHhc-----CCCCEEEEeCC
Confidence 2333222221 37887654333
No 299
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=50.55 E-value=28 Score=32.06 Aligned_cols=65 Identities=22% Similarity=0.168 Sum_probs=37.1
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEE-EeCCc--chHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV-WVPGS--FEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv-~VPGA--~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.|+.||..+.-. ..++..+.|++.|+. +.++ .|..- +|-=--+-.+++..++|.||++| |.+..+
T Consensus 24 ~~~livtd~~~~-----~~~~~~~~l~~~~~~---~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavG----GGs~~D 91 (367)
T cd08182 24 KRVLLVTGPRSA-----IASGLTDILKPLGTL---VVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVG----GGSVLD 91 (367)
T ss_pred CeEEEEeCchHH-----HHHHHHHHHHHcCCe---EEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeC----CcHHHH
Confidence 588888766443 334456667777753 3333 23332 23222223345667899999999 555554
No 300
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=50.27 E-value=19 Score=34.28 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 87 ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 87 ~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
.+|-.+|++||..-|+.+|+. ++.++.|--+-++| ++.+.+|||+|
T Consensus 225 ~Did~~mv~gak~Nl~~y~i~--~~~~~~~~Da~~lp------l~~~~vdaIat 270 (347)
T COG1041 225 SDIDERMVRGAKINLEYYGIE--DYPVLKVLDATNLP------LRDNSVDAIAT 270 (347)
T ss_pred cchHHHHHhhhhhhhhhhCcC--ceeEEEecccccCC------CCCCccceEEe
Confidence 388999999999999999974 78888888999999 34457999997
No 301
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.19 E-value=16 Score=32.06 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=53.1
Q ss_pred HHHHHHHHCCCCCCCeEEEEeCCcchHHHH---HHHhhhcCCccEEEEEeeeeeCCchhHHH-------HHHHHHHHHHH
Q 027801 96 GALETFKKYSVKEENIDVVWVPGSFEIGVV---AQQLGKSGKYTAVLCIGAVVRGDTTHYDA-------VANSAASGVLS 165 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~a---ak~L~~~~~yDaVIaLG~VIrGeT~H~e~-------Va~~vs~gLm~ 165 (218)
...+.|.+.|+. +++|+ |..|.+ ++.|.+. ..|.+|..|.|+.-+.-+.-+ |+-.....+++
T Consensus 31 ~i~~al~~~Gi~-----~iEit--l~~~~~~~~I~~l~~~-~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~~vi~ 102 (212)
T PRK05718 31 PLAKALVAGGLP-----VLEVT--LRTPAALEAIRLIAKE-VPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTPPLLK 102 (212)
T ss_pred HHHHHHHHcCCC-----EEEEe--cCCccHHHHHHHHHHH-CCCCEEEEeeccCHHHHHHHHHcCCCEEECCCCCHHHHH
Confidence 445677777875 34443 444433 3344322 247889999996532211111 11224567888
Q ss_pred hchhcCCceEEEEcCCCCHHHHHHhhC
Q 027801 166 AGVNSGVPCIFGVLTCDNMDQALNRAG 192 (218)
Q Consensus 166 lsL~~~vPVifGVLT~~n~eQA~~Rag 192 (218)
...++++|.+=|++|+....+|+ +.|
T Consensus 103 ~a~~~~i~~iPG~~TptEi~~a~-~~G 128 (212)
T PRK05718 103 AAQEGPIPLIPGVSTPSELMLGM-ELG 128 (212)
T ss_pred HHHHcCCCEeCCCCCHHHHHHHH-HCC
Confidence 88999999999999987666665 445
No 302
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=50.16 E-value=1.2e+02 Score=26.35 Aligned_cols=74 Identities=23% Similarity=0.237 Sum_probs=47.4
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch------------HHHHHHHhhhc---------CCcc
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE------------IGVVAQQLGKS---------GKYT 136 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E------------LP~aak~L~~~---------~~yD 136 (218)
+.||-.+-- -++++|.+.+-.++. |+.++--++++- .--++-.++.. +.||
T Consensus 39 LlivGp~~~---dee~~E~~vKi~ekf-----nipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg~g~yD 110 (170)
T COG1880 39 LLIVGPLAL---DEELLELAVKIIEKF-----NIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDGNGNYD 110 (170)
T ss_pred eEEeccccc---CHHHHHHHHHHHHhc-----CCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCCCCCcc
Confidence 345544433 246777777766653 455666666654 22233333333 7899
Q ss_pred EEEEEeeeeeCCchhHHHHHHHHHHHHHHhc
Q 027801 137 AVLCIGAVVRGDTTHYDAVANSAASGVLSAG 167 (218)
Q Consensus 137 aVIaLG~VIrGeT~H~e~Va~~vs~gLm~ls 167 (218)
-||.+||+ -|+.+.+.+||...+
T Consensus 111 lviflG~~--------~yy~sq~Ls~lKhFs 133 (170)
T COG1880 111 LVIFLGSI--------YYYLSQVLSGLKHFS 133 (170)
T ss_pred eEEEEecc--------HHHHHHHHHHhhhhh
Confidence 99999997 467788889999888
No 303
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=50.10 E-value=22 Score=34.52 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 92 LLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 92 ~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
.+.+.|.+.|++.|++-+.+|-+.+-=.--==+.+-.+++++.||++|++| |+..|+.
T Consensus 85 ~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiG----GGSa~Dt 142 (465)
T KOG3857|consen 85 GLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIG----GGSAHDT 142 (465)
T ss_pred ccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEEEEc----Ccchhhh
Confidence 577899999999999755555444432222223344456889999999998 6777774
No 304
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=50.00 E-value=51 Score=28.96 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=26.2
Q ss_pred CCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceE
Q 027801 133 GKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 133 ~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
.+||+|+.-|-- -.-+++..+.-.+.|.+-..+.++||.
T Consensus 93 ~dYDav~iPGG~----g~~~dl~~~~~l~~ll~~f~~~gK~ia 131 (231)
T cd03147 93 DDYGIFFVAGGH----GTLFDFPHATNLQKIAQQIYANGGVVA 131 (231)
T ss_pred hhCcEEEECCCC----chhhhcccCHHHHHHHHHHHHcCCEEE
Confidence 579999877742 233456667667777777777788763
No 305
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=49.77 E-value=22 Score=33.10 Aligned_cols=61 Identities=7% Similarity=-0.046 Sum_probs=37.3
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-----HHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-----VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-----~aak~L~~~~~yDaVIaLG~ 143 (218)
.|+.||..+.-.. ..+++...+.|++.|+. +.++ +|.-+=| .-+-.+++..++|.||++|=
T Consensus 30 ~r~lvvt~~~~~~--~g~~~~v~~~L~~~~i~---~~~~--~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG 95 (379)
T TIGR02638 30 KKALVVTDKDLIK--FGVADKVTDLLDEAGIA---YELF--DEVKPNPTITVVKAGVAAFKASGADYLIAIGG 95 (379)
T ss_pred CEEEEEcCcchhh--ccchHHHHHHHHHCCCe---EEEE--CCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5888888764222 12667777888888863 3333 4432222 22333446678999999993
No 306
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=49.63 E-value=31 Score=30.70 Aligned_cols=34 Identities=24% Similarity=0.144 Sum_probs=25.1
Q ss_pred CeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEee
Q 027801 110 NIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 110 ~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~ 143 (218)
++....+|=+|+ ..-++..+++..++|+||++|.
T Consensus 36 ~v~~~~lPv~f~~~~~~l~~~i~~~~Pd~Vi~~G~ 70 (222)
T PRK13195 36 TVISRIVPNTFFESIAAAQQAIAEIEPALVIMLGE 70 (222)
T ss_pred EEEEEEeCeEehHHHHHHHHHHHHHCCCEEEEeCc
Confidence 466667899985 4445566666778999999995
No 307
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=49.56 E-value=61 Score=27.56 Aligned_cols=117 Identities=12% Similarity=0.178 Sum_probs=72.5
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhh---cCCccEEEEEeeeeeCCchhHHH
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIGAVVRGDTTHYDA 154 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~---~~~yDaVIaLG~VIrGeT~H~e~ 154 (218)
|+||.+...+. .-.+.|.+.|++.|++ ..++|-++.-.|--..++++ ..+++.+|+.. |-..|--=
T Consensus 1 V~IimGS~SD~---~~~~~a~~~L~~~gi~----~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~A----G~aa~Lpg 69 (156)
T TIGR01162 1 VGIIMGSDSDL---PTMKKAADILEEFGIP----YELRVVSAHRTPELMLEYAKEAEERGIKVIIAGA----GGAAHLPG 69 (156)
T ss_pred CEEEECcHhhH---HHHHHHHHHHHHcCCC----eEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeC----CccchhHH
Confidence 35666665554 4568899999999997 45669999999988877764 34678888764 55555432
Q ss_pred HHHHHHHHHHHhchhcCCceEEEEcCCCC---HHHHHHhhCCC--------CCCcHHHHHHHHHHHHHHHhh
Q 027801 155 VANSAASGVLSAGVNSGVPCIFGVLTCDN---MDQALNRAGGK--------SGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 155 Va~~vs~gLm~lsL~~~vPVifGVLT~~n---~eQA~~Rag~k--------~gnKG~EAA~aAleM~~L~~~ 215 (218)
+ ++-.+.+|||-.=+-..+ ++--+.-..-- .-+.|..||..|.+++.+.+.
T Consensus 70 v----------va~~t~~PVIgvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~~~~nAa~~AaqIl~~~d~ 131 (156)
T TIGR01162 70 M----------VAALTPLPVIGVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAALLAAQILGIKDP 131 (156)
T ss_pred H----------HHhccCCCEEEecCCccCCCCHHHHHHHhcCCCCCeeEEEEcCChhHHHHHHHHHHcCCCH
Confidence 2 222356777744332211 12112221111 125788899999999876544
No 308
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=49.50 E-value=1.1e+02 Score=28.70 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=40.4
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch---HHH---HHHHhhhcCCcc---EEEEEeeeee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE---IGV---VAQQLGKSGKYT---AVLCIGAVVR 146 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E---LP~---aak~L~~~~~yD---aVIaLG~VIr 146 (218)
.|+.||.... +.+.+.+...+.|++.|+. +.++.+|+.-+ +.. +++.+ ...++| .||++|
T Consensus 24 ~rvlvVtd~~---v~~~~~~~l~~~L~~~g~~---~~~~~~~~~e~~k~~~~v~~~~~~~-~~~~~dr~~~IIAvG---- 92 (355)
T cd08197 24 DKYLLVTDSN---VEDLYGHRLLEYLREAGAP---VELLSVPSGEEHKTLSTLSDLVERA-LALGATRRSVIVALG---- 92 (355)
T ss_pred CeEEEEECcc---HHHHHHHHHHHHHHhcCCc---eEEEEeCCCCCCCCHHHHHHHHHHH-HHcCCCCCcEEEEEC----
Confidence 5788887654 3334667778888888874 55666665322 222 22233 345566 999999
Q ss_pred CCchhH
Q 027801 147 GDTTHY 152 (218)
Q Consensus 147 GeT~H~ 152 (218)
|.+..+
T Consensus 93 GGsv~D 98 (355)
T cd08197 93 GGVVGN 98 (355)
T ss_pred CcHHHH
Confidence 555544
No 309
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=49.31 E-value=51 Score=26.85 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=25.1
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEE
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAV 138 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaV 138 (218)
+.-.+.|+++|++ .++.|||....|+. ..|.+..+..-|
T Consensus 5 ~~l~~~L~~~Gv~----~vfgvpG~~~~~l~-~al~~~~~i~~i 43 (172)
T PF02776_consen 5 EALAEALKANGVT----HVFGVPGSGNLPLL-DALEKSPGIRFI 43 (172)
T ss_dssp HHHHHHHHHTT-S----EEEEE--GGGHHHH-HHHHHTTTSEEE
T ss_pred HHHHHHHHHCCCe----EEEEEeChhHhHHH-HHhhhhcceeee
Confidence 4456789999996 79999999999954 555444334433
No 310
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=49.29 E-value=1.2e+02 Score=26.72 Aligned_cols=75 Identities=11% Similarity=0.053 Sum_probs=43.7
Q ss_pred EEEEEEcc--cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHH
Q 027801 77 RFALVVAR--FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDA 154 (218)
Q Consensus 77 RIaIV~Sr--fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~ 154 (218)
|++|++-. -+ .-..+.++..++.|+++|++ ++++..-..-+....++... ..++|.+|++| ||-.-.+
T Consensus 3 ~~~ii~Np~sg~-~~~~~~~~~i~~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~-~~~~d~ivv~G----GDGTl~~- 72 (293)
T TIGR00147 3 EAPAILNPTAGK-SNDNKPLREVIMLLREEGME---IHVRVTWEKGDAARYVEEAR-KFGVDTVIAGG----GDGTINE- 72 (293)
T ss_pred eEEEEECCCccc-hhhHHHHHHHHHHHHHCCCE---EEEEEecCcccHHHHHHHHH-hcCCCEEEEEC----CCChHHH-
Confidence 66666422 11 12345566678889999974 55555544434444455544 34699999988 5554433
Q ss_pred HHHHHHHHHHH
Q 027801 155 VANSAASGVLS 165 (218)
Q Consensus 155 Va~~vs~gLm~ 165 (218)
+.++|++
T Consensus 73 ----v~~~l~~ 79 (293)
T TIGR00147 73 ----VVNALIQ 79 (293)
T ss_pred ----HHHHHhc
Confidence 4455543
No 311
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=49.14 E-value=19 Score=33.49 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=40.2
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHHH--HHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVV--AQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~a--ak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.|+.||..+.-.. ....+...+.|++.|+. +.++. |++--.+..+ +-.+++..++|+||++| |.+..+
T Consensus 29 ~~~lvv~~~~~~~--~~~~~~v~~~L~~~~~~---~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG----GGS~iD 99 (377)
T cd08176 29 KKALIVTDKGLVK--IGVVEKVTDVLDEAGID---YVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIG----GGSPHD 99 (377)
T ss_pred CeEEEECCchHhh--cCcHHHHHHHHHHcCCe---EEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeC----CcHHHH
Confidence 4788887654322 25667778888888874 44442 3332223222 22234667899999999 555544
No 312
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=49.09 E-value=51 Score=26.11 Aligned_cols=77 Identities=13% Similarity=0.095 Sum_probs=51.4
Q ss_pred HHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHH-----------HHHH
Q 027801 97 ALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAA-----------SGVL 164 (218)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs-----------~gLm 164 (218)
..+.|+++|.. ......||.-.+ |=-+++..+ .++|.||+.|-+= -.++|+..+++. .-+-
T Consensus 22 l~~~l~~~G~~--v~~~~~v~Dd~~~i~~~l~~~~--~~~D~VittGG~g---~~~~D~t~~a~~~~~~~~l~~~~~~~~ 94 (144)
T PF00994_consen 22 LAALLEELGIE--VIRYGIVPDDPDAIKEALRRAL--DRADLVITTGGTG---PGPDDVTPEALAEAGGRELPGFEELFR 94 (144)
T ss_dssp HHHHHHHTTEE--EEEEEEEESSHHHHHHHHHHHH--HTTSEEEEESSSS---SSTTCHHHHHHHHHSSEE-HHHHHHHH
T ss_pred HHHHHHHcCCe--eeEEEEECCCHHHHHHHHHhhh--ccCCEEEEcCCcC---cccCCcccHHHHHhcCcccccChHHHH
Confidence 45667778874 456667887655 333333333 4569999999872 344566666665 4466
Q ss_pred HhchhcCCceEEEEcC
Q 027801 165 SAGVNSGVPCIFGVLT 180 (218)
Q Consensus 165 ~lsL~~~vPVifGVLT 180 (218)
.++++.+.|.+++.+.
T Consensus 95 ~~~~~pg~p~~~~~~~ 110 (144)
T PF00994_consen 95 GVSMRPGKPTGLAPGA 110 (144)
T ss_dssp HHHHHSTTTCETEGGG
T ss_pred HHHHHhhcccceeeEE
Confidence 7889999998888774
No 313
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=48.94 E-value=1.5e+02 Score=24.28 Aligned_cols=85 Identities=19% Similarity=0.174 Sum_probs=52.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC-CcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-GSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP-GA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
..||++|..... ....+.++..+.++++|.. ......+| +.-+..-.++++.+ .+.|+||+.+.-
T Consensus 135 ~~~i~~v~~~~~--~~~~~~~~~~~~~~~~g~~--i~~~~~~~~~~~~~~~~~~~l~~-~~~~~vi~~~~~--------- 200 (298)
T cd06268 135 VKKVAIIYDDYA--YGRGLAAAFREALKKLGGE--VVAEETYPPGATDFSPLIAKLKA-AGPDAVFLAGYG--------- 200 (298)
T ss_pred CCEEEEEEcCCc--hhHHHHHHHHHHHHHcCCE--EEEEeccCCCCccHHHHHHHHHh-cCCCEEEEcccc---------
Confidence 569999987654 5567788999999999864 22233333 44456666677653 467888876541
Q ss_pred HHHHHHHHHHHHhchhcCCceE
Q 027801 154 AVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVi 175 (218)
-.+..+.+.+.+..+ ++|++
T Consensus 201 ~~~~~~~~~~~~~g~--~~~~~ 220 (298)
T cd06268 201 GDAALFLKQAREAGL--KVPIV 220 (298)
T ss_pred chHHHHHHHHHHcCC--CCcEE
Confidence 133445556665554 45553
No 314
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=48.86 E-value=98 Score=23.91 Aligned_cols=73 Identities=12% Similarity=0.270 Sum_probs=42.5
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCc-cEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCC
Q 027801 94 LEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKY-TAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGV 172 (218)
Q Consensus 94 l~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~y-DaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~v 172 (218)
++...+.|..++. +++++.... -+..-.+.+..+...+ |.||+.| |+-. -+++..++++...+.
T Consensus 17 ~~~v~~~l~~~~~---~~~~~~t~~-~~~~~~~~~~~~~~~~~~~ivv~G----GDGT-----l~~vv~~l~~~~~~~-- 81 (130)
T PF00781_consen 17 WKKVEPALRAAGI---DYEVIETES-AGHAEALARILALDDYPDVIVVVG----GDGT-----LNEVVNGLMGSDRED-- 81 (130)
T ss_dssp HHHHHHHHHHTTC---EEEEEEESS-TTHHHHHHHHHHHTTS-SEEEEEE----SHHH-----HHHHHHHHCTSTSSS--
T ss_pred HHHHHHHHHHcCC---ceEEEEEec-cchHHHHHHHHhhccCccEEEEEc----CccH-----HHHHHHHHhhcCCCc--
Confidence 3677788888885 366666655 3344444444455666 9999998 4433 234566666655543
Q ss_pred ceEEEEcCC
Q 027801 173 PCIFGVLTC 181 (218)
Q Consensus 173 PVifGVLT~ 181 (218)
.+-+|+|-.
T Consensus 82 ~~~l~iiP~ 90 (130)
T PF00781_consen 82 KPPLGIIPA 90 (130)
T ss_dssp --EEEEEE-
T ss_pred cceEEEecC
Confidence 445666654
No 315
>PRK12321 cobN cobaltochelatase subunit CobN; Reviewed
Probab=48.77 E-value=1.2e+02 Score=33.00 Aligned_cols=99 Identities=14% Similarity=0.070 Sum_probs=56.9
Q ss_pred CCEEEEEEcccCHH-HHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHH---HHhhhcCCccEEEEE-eeeeeCCc
Q 027801 75 GLRFALVVARFNEL-VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVA---QQLGKSGKYTAVLCI-GAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srfn~~-It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aa---k~L~~~~~yDaVIaL-G~VIrGeT 149 (218)
...|+|+.-|-+-. =--..++.-+++|++.|+. ..-+.++|--+ |-+. ..+......|+||.+ +.-..|+.
T Consensus 198 ~p~vgilfyr~~~~~~~~~~idali~~Le~~G~~---~ipvf~~~l~~-~~~~~~~~~~~~~~~~d~iin~t~F~~~~~~ 273 (1100)
T PRK12321 198 APLALVLFYRSYLLAADTAPVDALAAALRARGFA---AVGLFVPSLKD-PEAAAWLRAALAALRPAAIVNATAFSARGDD 273 (1100)
T ss_pred CCeEEEEEehhhhccCCcHHHHHHHHHHHHCCCE---EEEEEeccccc-hhHHHHHHHhccCCCCCEEEecCcccCCCcc
Confidence 46899986654310 0123445556889999984 55556776544 4333 333345578999977 44333321
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
.+ .+=-+.|+||+.+++...+.+ .|+..
T Consensus 274 --------~~-----~~l~~l~vPVlq~i~~~~~~e-~W~~s 301 (1100)
T PRK12321 274 --------GA-----SPLDAADCPVFQVALATARRA-AWAAS 301 (1100)
T ss_pred --------hh-----hHHHHCCCCEEEEecCCCCHH-HHHhC
Confidence 01 122336999999998765544 45543
No 316
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=48.58 E-value=33 Score=32.12 Aligned_cols=67 Identities=24% Similarity=0.302 Sum_probs=39.6
Q ss_pred CEEEEEEcccCHHHHHH-HHHHHHHHHHHCCCCCCCeEEEE-eCCcc--hHHHHHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 76 LRFALVVARFNELVTKL-LLEGALETFKKYSVKEENIDVVW-VPGSF--EIGVVAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~-Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~--ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
.|+.||..+. +.+. .++...+.|++.|+. +.++. |.+-= |.-.-+-.+++..++|+||++| |.+..
T Consensus 22 ~k~liVtd~~---~~~~g~~~~v~~~L~~~gi~---~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiG----GGS~i 91 (398)
T cd08178 22 KRAFIVTDRF---MVKLGYVDKVIDVLKRRGVE---TEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALG----GGSPM 91 (398)
T ss_pred CeEEEEcChh---HHhCccHHHHHHHHHHCCCe---EEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeC----CccHH
Confidence 5888887643 3333 667778888888863 33331 22222 2222222334677899999999 66655
Q ss_pred H
Q 027801 152 Y 152 (218)
Q Consensus 152 ~ 152 (218)
+
T Consensus 92 D 92 (398)
T cd08178 92 D 92 (398)
T ss_pred H
Confidence 5
No 317
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=48.49 E-value=54 Score=29.39 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=35.7
Q ss_pred HHHhhhcCCccEEEEEeeeeeCCchhHHHH-HHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 126 AQQLGKSGKYTAVLCIGAVVRGDTTHYDAV-ANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 126 ak~L~~~~~yDaVIaLG~VIrGeT~H~e~V-a~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
++++. ..++||++++|.- ||-.+...= -..+.+...+. ...++||+.||- + +.+++++++
T Consensus 27 ~~~l~-~~Gv~gi~v~Gst--GE~~~Ls~eEr~~l~~~~~~~-~~~~~pvi~gv~-~-~t~~~i~~a 87 (289)
T cd00951 27 VEWLL-SYGAAALFAAGGT--GEFFSLTPDEYAQVVRAAVEE-TAGRVPVLAGAG-Y-GTATAIAYA 87 (289)
T ss_pred HHHHH-HcCCCEEEECcCC--cCcccCCHHHHHHHHHHHHHH-hCCCCCEEEecC-C-CHHHHHHHH
Confidence 34443 4689999999986 776664110 11122222222 234799999984 5 778887765
No 318
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=48.47 E-value=1.7e+02 Score=24.71 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=56.3
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
..+.||++|-+--.. .+...+...+.+++.|+.. ..+.+.-.-.-|-..+.+. ..|+|+.-| |+|.++
T Consensus 27 ~~~~~i~~iptA~~~--~~~~~~~~~~~~~~lG~~~---~~~~~~~~~~~~~~~~~l~---~ad~I~~~G----G~~~~~ 94 (210)
T cd03129 27 GAGARVLFIPTASGD--RDEYGEEYRAAFERLGVEV---VHLLLIDTANDPDVVARLL---EADGIFVGG----GNQLRL 94 (210)
T ss_pred CCCCeEEEEeCCCCC--hHHHHHHHHHHHHHcCCce---EEEeccCCCCCHHHHHHHh---hCCEEEEcC----CcHHHH
Confidence 357899999665543 3455567788888889853 3333322233366666664 799999988 899888
Q ss_pred HHHHHH--HHHHHHHhchhcCCceE
Q 027801 153 DAVANS--AASGVLSAGVNSGVPCI 175 (218)
Q Consensus 153 e~Va~~--vs~gLm~lsL~~~vPVi 175 (218)
--.... ..+.|.+.-. .++|++
T Consensus 95 ~~~l~~t~~~~~i~~~~~-~G~v~~ 118 (210)
T cd03129 95 LSVLRETPLLDAILKRVA-RGVVIG 118 (210)
T ss_pred HHHHHhCChHHHHHHHHH-cCCeEE
Confidence 655554 3444444433 466554
No 319
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=48.40 E-value=25 Score=35.18 Aligned_cols=85 Identities=15% Similarity=0.262 Sum_probs=57.8
Q ss_pred HHHHHHHHCCCCC--CCeEEEEeCCcchHHHH-----------------HHHhhhcCCccEEEEEeeeeeCCchhHHHHH
Q 027801 96 GALETFKKYSVKE--ENIDVVWVPGSFEIGVV-----------------AQQLGKSGKYTAVLCIGAVVRGDTTHYDAVA 156 (218)
Q Consensus 96 gA~~~L~~~Gv~~--e~I~vv~VPGA~ELP~a-----------------ak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va 156 (218)
..+++|+..|.-+ +--.++++|| +.||+. ++.-+...++|=||-.== -|...||+.+.
T Consensus 340 ~vveel~~kglvee~~Gr~i~f~~g-~~IPLtvVKSDGGftYdtsDlaAl~yRl~EEkadwiIYVvD--~GQs~Hf~t~f 416 (656)
T KOG4426|consen 340 EVVEELKSKGLVEEDDGRRIMFPEG-CDIPLTVVKSDGGFTYDTSDLAALKYRLNEEKADWIIYVVD--SGQSQHFNTIF 416 (656)
T ss_pred HHHHHHhcCCceeecCCceEeccCC-CCcceEEEecCCCcccccchHHHHHHHHHHhhcCeEEEEee--CchhHHHHHHH
Confidence 4567888888432 3457888888 899953 222234577888886433 59999999998
Q ss_pred HHHHH-HHHHhchhcCCceEEEEcCCCC
Q 027801 157 NSAAS-GVLSAGVNSGVPCIFGVLTCDN 183 (218)
Q Consensus 157 ~~vs~-gLm~lsL~~~vPVifGVLT~~n 183 (218)
.+.-+ |..+=....--.|+||++-.++
T Consensus 417 kAar~~gwld~~~~RV~HvgFGlVLGeD 444 (656)
T KOG4426|consen 417 KAARKAGWLDPTYPRVEHVGFGLVLGED 444 (656)
T ss_pred HHHHHcCccCCCccceeeeeeeeEEccC
Confidence 77643 4444444444579999987766
No 320
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=48.05 E-value=27 Score=32.34 Aligned_cols=61 Identities=10% Similarity=-0.012 Sum_probs=35.2
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-----HHHHHhhhcCCccEEEEEe
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-----VVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-----~aak~L~~~~~yDaVIaLG 142 (218)
.|+.||..+---. ...+++...+.|++.|+. +.+..|.-+=| --+-.+++..++|+||++|
T Consensus 24 ~r~livt~~~~~~-~~g~~~~v~~~L~~~g~~-----~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG 89 (375)
T cd08179 24 KKAFIVTGGGSMK-KFGFLDKVEAYLKEAGIE-----VEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALG 89 (375)
T ss_pred CeEEEEeCchHHH-hCChHHHHHHHHHHcCCe-----EEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5888887652211 114456667778777763 33344432212 1222334678999999999
No 321
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=47.63 E-value=29 Score=32.30 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=39.7
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCC--cchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPG--SFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPG--A~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.|+.||..+.-.. ..+++...+.|++.|+. +.++. |.. .+|--..+-.+++..++|.||++| |....+
T Consensus 29 ~~~livt~~~~~~--~~~~~~v~~~L~~~~~~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiG----GGsviD 99 (377)
T cd08188 29 KKVLLVSDPGVIK--AGWVDRVIESLEEAGLE---YVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVG----GGSPID 99 (377)
T ss_pred CeEEEEeCcchhh--CccHHHHHHHHHHcCCe---EEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeC----CchHHH
Confidence 5899998765322 12566677788887764 34432 222 122222222345667899999999 554444
No 322
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=47.31 E-value=2.2e+02 Score=28.15 Aligned_cols=85 Identities=18% Similarity=0.125 Sum_probs=55.6
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHH-HHHHhchhcCCceEE
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAAS-GVLSAGVNSGVPCIF 176 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~-gLm~lsL~~~vPVif 176 (218)
.+.|.+.|+++..+.++.-+| +-+.+.|..+.++|.|.-- |.+.-...|++.+.+ .+..+.++.+=---.
T Consensus 242 ~~ll~eaGlP~gvv~vv~g~~----~~~~~~L~~~~~vd~V~FT-----GS~~~G~~v~~~aa~~~l~pv~lElGGknp~ 312 (538)
T PLN02466 242 AKLLHEAGLPPGVLNVVSGFG----PTAGAALASHMDVDKLAFT-----GSTDTGKIVLELAAKSNLKPVTLELGGKSPF 312 (538)
T ss_pred HHHHHhcCCCcccEEEEecCc----hhHHHHHhcCCCcCEEEEE-----CCHHHHHHHHHHHHhcCCCcEEEEcCCCCeE
Confidence 567788899877777764433 3345667777789988765 567777778888774 666666664432222
Q ss_pred EEcCCCCHHHHHHhh
Q 027801 177 GVLTCDNMDQALNRA 191 (218)
Q Consensus 177 GVLT~~n~eQA~~Ra 191 (218)
-|+-.-|.++|.+++
T Consensus 313 iV~~dADl~~Aa~~i 327 (538)
T PLN02466 313 IVCEDADVDKAVELA 327 (538)
T ss_pred EEcCCCCHHHHHHHH
Confidence 345556788887663
No 323
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=47.02 E-value=1.7e+02 Score=24.53 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=52.1
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc---hHH-HHHHHhhhcCCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF---EIG-VVAQQLGKSGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~---ELP-~aak~L~~~~~yDaVIaLG~VIrGeT 149 (218)
...||++|...-. .....-++|..+.++++|...+...+. .+.+ +-. -+++.+++. .+|+|+|-.-
T Consensus 119 g~~~I~~i~~~~~-~~~~~R~~Gf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~-~~~ai~~~~d------ 188 (260)
T cd06304 119 KTGKVGFVGGMPI-PEVNRFINGFAAGAKSVNPDITVLVIY--TGSFFDPAKGKEAALALIDQ-GADVIFAAAG------ 188 (260)
T ss_pred cCCceEEEecccc-HHHHHHHHHHHHHHHHhCCCcEEEEEE--ecCccCcHHHHHHHHHHHhC-CCCEEEEcCC------
Confidence 4568999976323 334455789999999999753222222 3333 322 234555544 3698877543
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.++..+.+.+.+.. ..|++.++.+.+
T Consensus 189 ----~~A~gv~~al~~~g--------v~vigfD~~~~~ 214 (260)
T cd06304 189 ----GTGPGVIQAAKEAG--------VYAIGVDSDQSA 214 (260)
T ss_pred ----CCchHHHHHHHHcC--------CEEEeecCchhh
Confidence 24555556665544 346666664433
No 324
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=46.85 E-value=72 Score=29.07 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=35.2
Q ss_pred HHHHhhhcCCccEEEEEeeeeeCCchhH---HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 125 VAQQLGKSGKYTAVLCIGAVVRGDTTHY---DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 125 aak~L~~~~~yDaVIaLG~VIrGeT~H~---e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
.++.+.+ .+.|||+++|.- ||.++. |.. .+.+-..+.. +..+||+.|+-+. +.++|++.+
T Consensus 30 lv~~li~-~Gv~gi~~~Gtt--GE~~~Ls~eEr~--~v~~~~v~~~-~grvpviaG~g~~-~t~eai~la 92 (299)
T COG0329 30 LVEFLIA-AGVDGLVVLGTT--GESPTLTLEERK--EVLEAVVEAV-GGRVPVIAGVGSN-STAEAIELA 92 (299)
T ss_pred HHHHHHH-cCCCEEEECCCC--ccchhcCHHHHH--HHHHHHHHHH-CCCCcEEEecCCC-cHHHHHHHH
Confidence 3455544 459999999996 887654 211 1222222222 2469999999884 444444443
No 325
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=46.69 E-value=1.4e+02 Score=27.89 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=48.3
Q ss_pred chhhhhhHhhhcccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC-cc------hHHHHHHH
Q 027801 56 SFVQTEAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG-SF------EIGVVAQQ 128 (218)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG-A~------ELP~aak~ 128 (218)
.-.|..||-.+-... .-.+|++|.. +.+..+.+.+...+.+++.|+.- .....+|- .. ..--.+.+
T Consensus 156 D~~qa~ai~~li~~~---~w~~Vaii~~--~d~yG~~~~~~f~~~~~~~GicI--a~~e~~~~~~~~~~~~~~~~~~~~~ 228 (403)
T cd06361 156 DFYQTKAMAHLIKKS---GWNWVGIIIT--DDDYGRSALETFIIQAEANGVCI--AFKEILPASLSDNTKLNRIIRTTEK 228 (403)
T ss_pred hHhHHHHHHHHHHHc---CCcEEEEEEe--cCchHHHHHHHHHHHHHHCCeEE--EEEEEecCccCcchhHHHHHHHHHH
Confidence 334555554432222 3457999964 66677788888899999999742 12223333 21 22224445
Q ss_pred hhhcCCccEEEEEee
Q 027801 129 LGKSGKYTAVLCIGA 143 (218)
Q Consensus 129 L~~~~~yDaVIaLG~ 143 (218)
+++..+.|+||..|-
T Consensus 229 ~ik~~~a~vVvv~~~ 243 (403)
T cd06361 229 IIEENKVNVIVVFAR 243 (403)
T ss_pred HHhcCCCeEEEEEeC
Confidence 556678999988664
No 326
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.65 E-value=54 Score=29.60 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=50.3
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAV 155 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~V 155 (218)
+||+|+.- .+.-...+++...+.|+++|+. ++ ..++|.+|++|= +=.
T Consensus 1 M~i~Ii~~--~~~~~~~~~~~l~~~l~~~g~~---~~-------------------~~~~Dlvi~iGG----DGT----- 47 (265)
T PRK04885 1 MKVAIISN--GDPKSKRVASKLKKYLKDFGFI---LD-------------------EKNPDIVISVGG----DGT----- 47 (265)
T ss_pred CEEEEEeC--CCHHHHHHHHHHHHHHHHcCCc---cC-------------------CcCCCEEEEECC----cHH-----
Confidence 47888854 4455778888888999999874 11 146899999983 321
Q ss_pred HHHHHHHHHHhch-hcCCceE------EEEcCC---CCHHHHHHhh
Q 027801 156 ANSAASGVLSAGV-NSGVPCI------FGVLTC---DNMDQALNRA 191 (218)
Q Consensus 156 a~~vs~gLm~lsL-~~~vPVi------fGVLT~---~n~eQA~~Ra 191 (218)
+.+++..+.- ..++||+ .|.||. ++.++++++.
T Consensus 48 ---~L~a~~~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~l~~i 90 (265)
T PRK04885 48 ---LLSAFHRYENQLDKVRFVGVHTGHLGFYTDWRPFEVDKLVIAL 90 (265)
T ss_pred ---HHHHHHHhcccCCCCeEEEEeCCCceecccCCHHHHHHHHHHH
Confidence 2233333332 2588865 366774 4456677664
No 327
>TIGR03674 fen_arch flap structure-specific endonuclease. Endonuclease that cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA
Probab=46.43 E-value=35 Score=31.70 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 89 VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 89 It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
++..+++.+.+.|+..|+ .++..|| |-=.-+..|.+.+..|+|+.
T Consensus 127 ~~~~~~~~~k~lL~~~Gi-----p~i~AP~--EAeaq~a~L~~~g~vd~v~S 171 (338)
T TIGR03674 127 LTSEIVESSKKLLDLMGI-----PYVQAPS--EGEAQAAYMAKKGDVDYVGS 171 (338)
T ss_pred CCHHHHHHHHHHHHHcCC-----eEEECCc--cHHHHHHHHHHCCCeeEEec
Confidence 455688999999999997 4899999 65566777777777788764
No 328
>PLN02834 3-dehydroquinate synthase
Probab=46.18 E-value=1.2e+02 Score=29.31 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=39.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEE--EEeCC-----cch-HHHHHHHhhhc--CCccEEEEEeee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDV--VWVPG-----SFE-IGVVAQQLGKS--GKYTAVLCIGAV 144 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~v--v~VPG-----A~E-LP~aak~L~~~--~~yDaVIaLG~V 144 (218)
+.|+.||....= .+.+.+...+.|++.|+. +.+ +.+|+ .+| +--+++.+.+. .+.|.||++|
T Consensus 100 g~rvlIVtD~~v---~~~~~~~v~~~L~~~g~~---~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiG-- 171 (433)
T PLN02834 100 GKRVLVVTNETV---APLYLEKVVEALTAKGPE---LTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALG-- 171 (433)
T ss_pred CCEEEEEECccH---HHHHHHHHHHHHHhcCCc---eEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEEC--
Confidence 368888875543 334777788889988874 333 34675 233 22222333322 2355999999
Q ss_pred eeCCchhH
Q 027801 145 VRGDTTHY 152 (218)
Q Consensus 145 IrGeT~H~ 152 (218)
|++..+
T Consensus 172 --GGsv~D 177 (433)
T PLN02834 172 --GGVIGD 177 (433)
T ss_pred --ChHHHH
Confidence 455444
No 329
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=45.90 E-value=56 Score=28.51 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=35.9
Q ss_pred CCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEE
Q 027801 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (218)
Q Consensus 72 ~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaL 141 (218)
|.++.|||+-...- .+.++. ..|+.+|+++++++++.++ -|-++.. +.+|+.|+++.-
T Consensus 97 DLkGK~Igv~~~s~----~~~~l~---~~L~~~Gl~~~dv~~v~~~----~~~~~~a-l~~G~vDa~~~~ 154 (300)
T TIGR01729 97 DLKGKNVAVPFVST----THYSLL---AALKHWKTDPREVNILNLK----PPQIVAA-WQRGDIDAAYVW 154 (300)
T ss_pred HcCCCEEEeCCCCc----HHHHHH---HHHHHcCCChhheEEEecC----cHHHHHH-HHcCCcCEEEEe
Confidence 56788999853222 223333 3467789987777777654 2333333 468999998763
No 330
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=45.73 E-value=1e+02 Score=28.42 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=46.1
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC-CcchHHHHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-GSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP-GA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.|+++|... ......+.+...+.+++.|.+ -+...++| |.-+..-.+.++. ..+.|+|+..+.
T Consensus 134 ~~va~l~~d--~~~g~~~~~~~~~~~~~~G~~--vv~~~~~~~g~~Df~~~l~~i~-~~~pD~V~~~~~ 197 (374)
T TIGR03669 134 KKIYTIAAD--YNFGQLSADWVRVIAKENGAE--VVGEEFIPLSVSQFSSTIQNIQ-KADPDFVMSMLV 197 (374)
T ss_pred CeEEEEcCC--cHHHHHHHHHHHHHHHHcCCe--EEeEEecCCCcchHHHHHHHHH-HcCCCEEEEcCc
Confidence 589998864 445667788888999999974 23444555 8888887778874 456899997554
No 331
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=45.70 E-value=1.8e+02 Score=24.40 Aligned_cols=128 Identities=11% Similarity=0.066 Sum_probs=82.0
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
+...||.+...=+... +.=.+-....|.+.|+ +|+ .+|.+.-|-=+-+.+-.++.|.|+.-+. ..+|
T Consensus 10 g~rprvlvak~GlDgH--d~gakvia~~l~d~Gf-----eVi-~~g~~~tp~e~v~aA~~~dv~vIgvSsl-----~g~h 76 (143)
T COG2185 10 GARPRVLVAKLGLDGH--DRGAKVIARALADAGF-----EVI-NLGLFQTPEEAVRAAVEEDVDVIGVSSL-----DGGH 76 (143)
T ss_pred CCCceEEEeccCcccc--ccchHHHHHHHHhCCc-----eEE-ecCCcCCHHHHHHHHHhcCCCEEEEEec-----cchH
Confidence 3456666655333211 0001123455777786 455 7999999976666666788998876554 5677
Q ss_pred HHHHHHHHHHHHHhchhcCCc-eEEEEcCCCCHHHHHHhhCC-CCCCcHHHHHHHHHHHHHHHhh
Q 027801 153 DAVANSAASGVLSAGVNSGVP-CIFGVLTCDNMDQALNRAGG-KSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vP-VifGVLT~~n~eQA~~Rag~-k~gnKG~EAA~aAleM~~L~~~ 215 (218)
..-+..+.+.|.+...+ .++ ++=|++.+++. |.++-.|. ..-.-|.....++-.|...+..
T Consensus 77 ~~l~~~lve~lre~G~~-~i~v~~GGvip~~d~-~~l~~~G~~~if~pgt~~~~~~~~v~~~l~~ 139 (143)
T COG2185 77 LTLVPGLVEALREAGVE-DILVVVGGVIPPGDY-QELKEMGVDRIFGPGTPIEEALSDLLTRLGA 139 (143)
T ss_pred HHHHHHHHHHHHHhCCc-ceEEeecCccCchhH-HHHHHhCcceeeCCCCCHHHHHHHHHHHHHh
Confidence 77888999999999998 556 77788887773 44433332 2234466666777777776654
No 332
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=45.69 E-value=49 Score=30.24 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=37.6
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCc--chHHH---HHHHhhhcCCccEEEEEeeeeeCCc
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGS--FEIGV---VAQQLGKSGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA--~ELP~---aak~L~~~~~yDaVIaLG~VIrGeT 149 (218)
.|+.||..+.-.. ...+...+.|++.|++ +.++. ++|- -.+-. +++.+ +. ++|.||++| |..
T Consensus 24 ~~~livtd~~~~~---~~~~~v~~~l~~~~i~---~~~~~~~~~~~~pt~~~v~~~~~~~-~~-~~d~IIaIG----GGs 91 (348)
T cd08175 24 KKALIVADENTYA---AAGKKVEALLKRAGVV---VLLIVLPAGDLIADEKAVGRVLKEL-ER-DTDLIIAVG----SGT 91 (348)
T ss_pred CcEEEEECCcHHH---HHHHHHHHHHHHCCCe---eEEeecCCCcccCCHHHHHHHHHHh-hc-cCCEEEEEC----CcH
Confidence 5788887653332 2346777888888874 34443 3332 12222 22223 34 899999999 555
Q ss_pred hhH
Q 027801 150 THY 152 (218)
Q Consensus 150 ~H~ 152 (218)
..+
T Consensus 92 ~~D 94 (348)
T cd08175 92 IND 94 (348)
T ss_pred HHH
Confidence 544
No 333
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=45.68 E-value=63 Score=27.82 Aligned_cols=73 Identities=22% Similarity=0.120 Sum_probs=48.9
Q ss_pred CCEEEEEE---cccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVV---ARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~---Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
.+|++||. +||+.+-.|.=-.-..+.|++.|... ++..-||--+| |=-.+..++... +|.|+.-|=- |-|+
T Consensus 7 ~~~~~VvTVSd~r~~~~~~D~sG~~l~~~L~~ag~~~--~~~~iV~D~~~~I~~~l~~~~~~~-~DvvlttGGT--G~t~ 81 (169)
T COG0521 7 PLRIAVVTVSDRRSTGEYEDKSGPLLVELLEEAGHNV--AAYTIVPDDKEQIRATLIALIDED-VDVVLTTGGT--GITP 81 (169)
T ss_pred ceeEEEEEEecccccCCccccchhHHHHHHHHcCCcc--ceEEEeCCCHHHHHHHHHHHhcCC-CCEEEEcCCc--cCCC
Confidence 46777765 44444433444455677888888863 67778999888 445555666656 9999998875 6555
Q ss_pred hH
Q 027801 151 HY 152 (218)
Q Consensus 151 H~ 152 (218)
.+
T Consensus 82 RD 83 (169)
T COG0521 82 RD 83 (169)
T ss_pred Cc
Confidence 43
No 334
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=45.47 E-value=38 Score=32.64 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=54.8
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHH-----HHHHhchhcC
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAAS-----GVLSAGVNSG 171 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~-----gLm~lsL~~~ 171 (218)
...|++.|.. .+..-.||.-.| +=-++++.+ ..||.||..|-+--|+ +||+.+.+.+ -+-.+.++=|
T Consensus 209 ~a~l~~~G~e--~~~~giv~Dd~~~l~~~i~~a~--~~~DviItsGG~SvG~---~D~v~~~l~~~lG~v~~~gia~kPG 281 (404)
T COG0303 209 AALLERAGGE--VVDLGIVPDDPEALREAIEKAL--SEADVIITSGGVSVGD---ADYVKAALERELGEVLFHGVAMKPG 281 (404)
T ss_pred HHHHHHcCCc--eeeccccCCCHHHHHHHHHHhh--hcCCEEEEeCCccCcc---hHhHHHHHHhcCCcEEEEeeeecCC
Confidence 3445666763 466666787776 444444443 3499999999998887 7888877775 4556788899
Q ss_pred CceEEEEcC
Q 027801 172 VPCIFGVLT 180 (218)
Q Consensus 172 vPVifGVLT 180 (218)
+|.++|++-
T Consensus 282 kP~~~g~~~ 290 (404)
T COG0303 282 KPTGLGRLG 290 (404)
T ss_pred CceEEEEEC
Confidence 999999875
No 335
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=45.28 E-value=46 Score=29.11 Aligned_cols=36 Identities=28% Similarity=0.154 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhchhc---CCceEEEEcCCCCHHHHHH
Q 027801 153 DAVANSAASGVLSAGVNS---GVPCIFGVLTCDNMDQALN 189 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~---~vPVifGVLT~~n~eQA~~ 189 (218)
.|+||.+....++..-+. ++|.+|-=+- ...+|+.+
T Consensus 142 ~YlCN~v~Y~sL~~~~~~~~~~~~agFIHVP-~~~~~~~~ 180 (211)
T PRK13196 142 LYVCNFVLYHALHQLHLRGRAEVPCGFLHVP-ANAQVALA 180 (211)
T ss_pred ceeehHHHHHHHHHHHhcCCCCCeeEEEEcC-CCHHHhhh
Confidence 389999999888874333 4677775444 67778775
No 336
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=45.26 E-value=2.1e+02 Score=25.53 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=50.7
Q ss_pred EEEEEEcccC--HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc--hHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 77 RFALVVARFN--ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF--EIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 77 RIaIV~Srfn--~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~--ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
|||++..--. ..+...+++++...+++.+ -..++++..-... +.--++++|.+. ++|+|| |.+
T Consensus 1 kIG~l~plsG~~a~~g~~~~~g~~lA~~~in--G~~i~l~~~D~~~~~~a~~~~~~li~~-~V~~ii--G~~-------- 67 (336)
T cd06339 1 RIALLLPLSGPLASVGQAIRNGFLAALYDLN--GASIELRVYDTAGAAGAAAAARQAVAE-GADIIV--GPL-------- 67 (336)
T ss_pred CeEEEEcCCCcchHHHHHHHHHHHHHHHhcc--CCCceEEEEeCCCcccHHHHHHHHHHc-CCCEEE--ccC--------
Confidence 5677764333 4778888899998988853 1234554443332 222455667654 777554 432
Q ss_pred HHHHHHHHHHHHHhchhcCCceEE
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
+...+..+.++..+.++|++.
T Consensus 68 ---~s~~~~a~~~~~~~~~ip~i~ 88 (336)
T cd06339 68 ---LKENVAALAAAAAELGVPVLA 88 (336)
T ss_pred ---CHHHHHHHHhhhccCCCCEEE
Confidence 233445566777788999886
No 337
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=45.08 E-value=1.3e+02 Score=29.09 Aligned_cols=107 Identities=20% Similarity=0.214 Sum_probs=72.1
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCC---cchHHHHHHHhhhcCCccEEEE--EeeeeeCCchhHHHHHHHHHHHHHHhchh
Q 027801 95 EGALETFKKYSVKEENIDVVWVPG---SFEIGVVAQQLGKSGKYTAVLC--IGAVVRGDTTHYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPG---A~ELP~aak~L~~~~~yDaVIa--LG~VIrGeT~H~e~Va~~vs~gLm~lsL~ 169 (218)
-.-.|.+..+|-.+-| ...|-| +-++=-+++.+.+..+..+|+. +| ....+|.|++.+.+++.++.
T Consensus 305 maTmD~i~~~Gg~pAN--FlD~GG~a~~~~v~~a~~ii~~d~~vk~iliNIfG-----GI~~cd~iA~gii~a~~~~~-- 375 (422)
T PLN00124 305 MATMDIIKLHGGSPAN--FLDVGGNASEQQVVEAFKILTSDDKVKAILVNIFG-----GIMKCDVIASGIVNAAKQVG-- 375 (422)
T ss_pred HHHHHHHHHcCCCcce--eeecCCCCCHHHHHHHHHHHhcCCCCcEEEEEecC-----CccchHHHHHHHHHHHHhcC--
Confidence 3445777777776544 445544 3445566666667778888887 54 45567889999888888765
Q ss_pred cCCceEEEEcCCCCHHHHHHhhCCC-----CCCcHHHHHHHHHHHHH
Q 027801 170 SGVPCIFGVLTCDNMDQALNRAGGK-----SGNKGAEAALTAIEMAS 211 (218)
Q Consensus 170 ~~vPVifGVLT~~n~eQA~~Rag~k-----~gnKG~EAA~aAleM~~ 211 (218)
.++||+. =|...|+|+++..-... ..+==.|||+.|++++.
T Consensus 376 ~~~pivv-Rl~Gtn~~~g~~~l~~~~~~~~~~~~l~~A~~~~v~~~~ 421 (422)
T PLN00124 376 LKVPLVV-RLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKALA 421 (422)
T ss_pred CCCcEEE-EcCCCCHHHHHHHHHhCCCCeEEcCCHHHHHHHHHHHhc
Confidence 5799877 56668888886654321 22344788998888763
No 338
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=44.62 E-value=2e+02 Score=24.63 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=36.3
Q ss_pred EEEEEEcccC--HHHHHHHHHHHHHHHHHCC--CCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEE
Q 027801 77 RFALVVARFN--ELVTKLLLEGALETFKKYS--VKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVL 139 (218)
Q Consensus 77 RIaIV~Srfn--~~It~~Ll~gA~~~L~~~G--v~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVI 139 (218)
|||++...=. ......++.++...+++.+ +.-..++++..-...+-. -++++|.+.+++|+||
T Consensus 1 ~IG~~~~~sg~~~~~g~~~~~g~~~a~~~~~~~i~G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~ii 70 (333)
T cd06332 1 KIGLLTTLSGPYAALGQDIRDGFELALKQLGGKLGGRPVEVVVEDDELKPDVAVQAARKLIEQDKVDVVV 70 (333)
T ss_pred CeEEEeeccCchHhhhHHHHHHHHHHHHHhCCCcCCeEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 4566554322 2333467788888888764 333345666555444433 2456666666899876
No 339
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=44.58 E-value=97 Score=26.81 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=42.4
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC-CcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-GSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP-GA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..||+++... .......+++..+.+++.|+. .+....+| +.-+.--.+.++.+. +.|+|++.+.
T Consensus 136 ~~~v~~l~~~--~~~~~~~~~~~~~~~~~~G~~--~~~~~~~~~~~~d~~~~~~~l~~~-~~dav~~~~~ 200 (336)
T cd06326 136 LKRIAVFYQD--DAFGKDGLAGVEKALAARGLK--PVATASYERNTADVAAAVAQLAAA-RPQAVIMVGA 200 (336)
T ss_pred CceEEEEEec--CcchHHHHHHHHHHHHHcCCC--eEEEEeecCCcccHHHHHHHHHhc-CCCEEEEEcC
Confidence 4689999653 345567888999999999985 23333444 434554555666554 5799988653
No 340
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=44.56 E-value=1e+02 Score=27.65 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=44.3
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC-CcchHHHHHHHhhhcCCccEEEEEe
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-GSFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP-GA~ELP~aak~L~~~~~yDaVIaLG 142 (218)
.|++++.. |........+...+.+++.|++ .+...++| |.-+.--.++++. ..+.|+|+..+
T Consensus 135 k~v~~l~~--d~~~g~~~~~~~~~~~~~~G~~--vv~~~~~~~~~~D~s~~v~~l~-~~~pDav~~~~ 197 (359)
T TIGR03407 135 KRFFLLGS--DYVFPRTANKIIKAYLKSLGGT--VVGEDYTPLGHTDFQTIINKIK-AFKPDVVFNTL 197 (359)
T ss_pred ceEEEecC--ccHHHHHHHHHHHHHHHHcCCE--EEeeEEecCChHhHHHHHHHHH-HhCCCEEEEec
Confidence 68999864 3445556777888999999975 34455565 8888777778875 45689987544
No 341
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=44.16 E-value=54 Score=29.30 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=36.9
Q ss_pred CCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEE
Q 027801 70 LTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (218)
Q Consensus 70 ~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaL 141 (218)
+.|-++.||++...... +.++ ...|++.|++.++++.+.++ -+-+++-| .++..|+++..
T Consensus 117 ~~DLkGK~Iav~~~s~~----~~~l---~~~L~~~Gl~~~dv~~v~~~----~~~~~~Al-~~G~VDAa~~~ 176 (320)
T PRK11480 117 PEDLIGKRIAVPFISTT----HYSL---LAALKHWGIKPGQVEIVNLQ----PPAIIAAW-QRGDIDGAYVW 176 (320)
T ss_pred hHHcCCCEEecCCCCch----HHHH---HHHHHHcCCCHhheEEEECC----cHHHHHHH-HcCCcCEEEEc
Confidence 33567889998543322 2233 24477889988887766554 23333333 57899997654
No 342
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=44.12 E-value=2.8e+02 Score=26.18 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=56.1
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
.+.+.+.|+++..+.++.-+| -| +.+.|.++.++|.|..- |.+.-...|...+.+-+..+.++.+=---.-
T Consensus 167 ~~~~~~aGlP~gvv~~v~g~~-~~---~~~~L~~~~~v~~V~fT-----Gs~~~g~~v~~~aa~~~~~~~lElgG~~~~i 237 (456)
T cd07110 167 AEIAAEAGLPPGVLNVVTGTG-DE---AGAPLAAHPGIDKISFT-----GSTATGSQVMQAAAQDIKPVSLELGGKSPII 237 (456)
T ss_pred HHHHHHcCCCCCcEEEEecCc-hH---HHHHHhcCCCCCEEEEE-----CCHHHHHHHHHHHhhcCCeEEEEcCCCCeeE
Confidence 466778898876666653332 22 34667777889988755 5677777788887776777777655433444
Q ss_pred EcCCCCHHHHHHhh
Q 027801 178 VLTCDNMDQALNRA 191 (218)
Q Consensus 178 VLT~~n~eQA~~Ra 191 (218)
|+-..|.++|.+++
T Consensus 238 V~~dadl~~aa~~i 251 (456)
T cd07110 238 VFDDADLEKAVEWA 251 (456)
T ss_pred ECCCCCHHHHHHHH
Confidence 55556888876654
No 343
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=43.98 E-value=1.5e+02 Score=23.09 Aligned_cols=69 Identities=9% Similarity=0.029 Sum_probs=41.5
Q ss_pred HHHHHHH-CCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeee-CCchhHHHHHHHHHHHHHHhchhcCCce
Q 027801 97 ALETFKK-YSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVR-GDTTHYDAVANSAASGVLSAGVNSGVPC 174 (218)
Q Consensus 97 A~~~L~~-~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIr-GeT~H~e~Va~~vs~gLm~lsL~~~vPV 174 (218)
--+.|++ .|+. ++.+.+...=.-|-++..+ +.+.+|.||-.=- + |.-.| ..-...|.+..+++++|+
T Consensus 36 Ta~~L~~~~Gi~---v~~vk~~~~~g~~~i~~~i-~~g~i~~VInt~~--~~~~~~~-----~~dg~~iRr~a~~~~Ip~ 104 (115)
T cd01422 36 TGLLIQEATGLT---VNRMKSGPLGGDQQIGALI-AEGEIDAVIFFRD--PLTAQPH-----EPDVKALLRLCDVYNIPL 104 (115)
T ss_pred HHHHHHHhhCCc---EEEEecCCCCchhHHHHHH-HcCceeEEEEcCC--CCCCCcc-----cccHHHHHHHHHHcCCCE
Confidence 3344666 6764 4444331111247666665 7899999988732 2 33333 223567889999999998
Q ss_pred EE
Q 027801 175 IF 176 (218)
Q Consensus 175 if 176 (218)
.-
T Consensus 105 ~T 106 (115)
T cd01422 105 AT 106 (115)
T ss_pred EE
Confidence 63
No 344
>PRK07855 lipid-transfer protein; Provisional
Probab=43.79 E-value=54 Score=30.77 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.1
Q ss_pred hhhcCCccEEEEEeee
Q 027801 129 LGKSGKYTAVLCIGAV 144 (218)
Q Consensus 129 L~~~~~yDaVIaLG~V 144 (218)
.++++.+|.++++|..
T Consensus 94 ~I~sG~~d~vLv~g~~ 109 (386)
T PRK07855 94 AVATGVADVVVCYRAF 109 (386)
T ss_pred HHHCCCCCEEEEEeec
Confidence 3478999999999983
No 345
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=43.61 E-value=40 Score=29.15 Aligned_cols=88 Identities=20% Similarity=0.239 Sum_probs=53.2
Q ss_pred HHHHHHHHCCCCCCCeEE-EEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHH-------HHHHHHHHHHHhc
Q 027801 96 GALETFKKYSVKEENIDV-VWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDA-------VANSAASGVLSAG 167 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~v-v~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~-------Va~~vs~gLm~ls 167 (218)
...+.+.+.|+. .+++ +.-|+++| +++.+.+..+-+.+|..|.|+.-+.-+--. ++-.....+.+..
T Consensus 26 ~~~~a~~~gGi~--~iEvt~~~~~~~~---~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~~~~v~~~~ 100 (206)
T PRK09140 26 AHVGALIEAGFR--AIEIPLNSPDPFD---SIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNTDPEVIRRA 100 (206)
T ss_pred HHHHHHHHCCCC--EEEEeCCCccHHH---HHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCCCHHHHHHH
Confidence 345566667885 2322 34577776 566665443336899999997644332211 1112345677888
Q ss_pred hhcCCceEEEEcCCCCHHHHH
Q 027801 168 VNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 168 L~~~vPVifGVLT~~n~eQA~ 188 (218)
...+.|++-|+.|++...+|.
T Consensus 101 ~~~~~~~~~G~~t~~E~~~A~ 121 (206)
T PRK09140 101 VALGMVVMPGVATPTEAFAAL 121 (206)
T ss_pred HHCCCcEEcccCCHHHHHHHH
Confidence 889999999976665445554
No 346
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=43.60 E-value=1.5e+02 Score=27.55 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=35.6
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC-----cchHH-HHHHHhhhcCC----ccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG-----SFEIG-VVAQQLGKSGK----YTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG-----A~ELP-~aak~L~~~~~----yDaVIaLG~ 143 (218)
..|+.||..+.=. +...+...+.|+..|+. +..+.+|+ .+|.= -+++.+ ...+ +|.||++|=
T Consensus 26 ~~~~lvVtd~~v~---~~~~~~v~~~l~~~g~~---~~~~v~~~~e~~~s~~~v~~~~~~l-~~~~~~r~~d~IVaiGG 97 (354)
T cd08199 26 SGRRFVVVDQNVD---KLYGKKLREYFAHHNIP---LTILVLRAGEAAKTMDTVLKIVDAL-DAFGISRRREPVLAIGG 97 (354)
T ss_pred CCeEEEEECccHH---HHHHHHHHHHHHhcCCc---eEEEEeCCCCCCCCHHHHHHHHHHH-HHcCCCCCCCEEEEECC
Confidence 4577887755433 23446677778877874 45555666 23322 222333 3333 499999993
No 347
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=43.59 E-value=88 Score=27.48 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=44.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..||+++... +....+.+.+...+.+++.|+.. ....++ ++.-++.-.+.++ +..+.|+||..+.
T Consensus 136 ~~~v~~l~~~-~~~~g~~~~~~~~~~~~~~g~~v--~~~~~~~~~~~d~~~~v~~i-~~~~~d~vi~~~~ 201 (344)
T cd06348 136 IKRVAVFYAQ-DDAFSVSETEIFQKALRDQGLNL--VTVQTFQTGDTDFQAQITAV-LNSKPDLIVISAL 201 (344)
T ss_pred CeEEEEEEeC-CchHHHHHHHHHHHHHHHcCCEE--EEEEeeCCCCCCHHHHHHHH-HhcCCCEEEECCc
Confidence 3589988764 33356778888899999999753 222333 5677777777787 4556898876664
No 348
>PRK06756 flavodoxin; Provisional
Probab=43.53 E-value=1.6e+02 Score=23.16 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=44.4
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeee--CCchhHH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVR--GDTTHYD 153 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIr--GeT~H~e 153 (218)
+||.||....+- =|+.|.+...+.|++.|+. ++++.+.-.-+. ..+ .+||+| .+|+-.- |..+.
T Consensus 2 mkv~IiY~S~tG-nTe~vA~~ia~~l~~~g~~---v~~~~~~~~~~~----~~~---~~~d~v-i~gspt~~~g~~p~-- 67 (148)
T PRK06756 2 SKLVMIFASMSG-NTEEMADHIAGVIRETENE---IEVIDIMDSPEA----SIL---EQYDGI-ILGAYTWGDGDLPD-- 67 (148)
T ss_pred ceEEEEEECCCc-hHHHHHHHHHHHHhhcCCe---EEEeehhccCCH----HHH---hcCCeE-EEEeCCCCCCCCcH--
Confidence 478888766542 2556666666778778874 455544322111 122 368875 5676543 23331
Q ss_pred HHHHHHHHHHHHhchhcCCceEE
Q 027801 154 AVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVif 176 (218)
-.....+-|.+..++ ++|+..
T Consensus 68 -~~~~fl~~l~~~~l~-~k~~~~ 88 (148)
T PRK06756 68 -DFLDFYDAMDSIDLT-GKKAAV 88 (148)
T ss_pred -HHHHHHHHHhcCCCC-CCEEEE
Confidence 123333334444554 666543
No 349
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=43.46 E-value=34 Score=31.67 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=38.9
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHHH--HHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVV--AQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~a--ak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.|+.||..+.-.. ..+++...+.|++.|+. +.++. |.+--.+-.+ +-+.++..++|.||++| |.+.++
T Consensus 27 ~~~livt~~~~~~--~~~~~~v~~~L~~~~~~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiG----GGs~iD 97 (376)
T cd08193 27 KRVLVVTDPGILK--AGLIDPLLASLEAAGIE---VTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFG----GGSSMD 97 (376)
T ss_pred CeEEEEcCcchhh--CccHHHHHHHHHHcCCe---EEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeC----CchHHH
Confidence 5888887764221 12556677788888763 33331 2221112211 22223567899999999 666665
No 350
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=43.28 E-value=69 Score=26.81 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=40.8
Q ss_pred HHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHH
Q 027801 97 ALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGV 163 (218)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gL 163 (218)
..+.|.+.|+. -..+..||-..+ |--+++.+. .++|.||+-|-+ ...|+|+.-+++.+.+
T Consensus 24 l~~~L~~~G~~--v~~~~~v~Dd~~~I~~~l~~~~--~~~dlVIttGG~---G~t~~D~t~ea~~~~~ 84 (170)
T cd00885 24 LAKELAELGIE--VYRVTVVGDDEDRIAEALRRAS--ERADLVITTGGL---GPTHDDLTREAVAKAF 84 (170)
T ss_pred HHHHHHHCCCE--EEEEEEeCCCHHHHHHHHHHHH--hCCCEEEECCCC---CCCCCChHHHHHHHHh
Confidence 34557788885 355667888776 444455554 379999999998 4556777777766653
No 351
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=43.25 E-value=89 Score=28.23 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=35.7
Q ss_pred HHHhhhcCCccEEEEEeeeeeCCchhHHHH-HHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 126 AQQLGKSGKYTAVLCIGAVVRGDTTHYDAV-ANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 126 ak~L~~~~~yDaVIaLG~VIrGeT~H~e~V-a~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
++.+. ..++||++++|.- ||-.+...= -..+.+...+. ....+||+.|| +. +.+++++.+
T Consensus 34 i~~l~-~~Gv~Gi~~~Gst--GE~~~Lt~eEr~~~~~~~~~~-~~~~~pvi~gv-~~-~t~~~i~~~ 94 (303)
T PRK03620 34 LEWLA-PYGAAALFAAGGT--GEFFSLTPDEYSQVVRAAVET-TAGRVPVIAGA-GG-GTAQAIEYA 94 (303)
T ss_pred HHHHH-HcCCCEEEECcCC--cCcccCCHHHHHHHHHHHHHH-hCCCCcEEEec-CC-CHHHHHHHH
Confidence 34443 3689999999986 776664110 01122222222 24579999999 44 778887765
No 352
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=43.11 E-value=81 Score=29.20 Aligned_cols=81 Identities=7% Similarity=-0.075 Sum_probs=50.2
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe---CCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV---PGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V---PGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
-.||+||... .+....+++...+.+++.|+.. .....+ ++.-++--.++++.+..+.|.||..|- ....
T Consensus 172 w~~vaii~~~--~~~G~~~~~~~~~~~~~~gi~i--~~~~~~~~~~~~~d~~~~l~~l~~~~~a~viil~~~----~~~~ 243 (452)
T cd06362 172 WTYVSTVASE--GNYGEKGIEAFEKLAAERGICI--AGSEKIPSSATEEEFDNIIRKLLSKPNARVVVLFCR----EDDI 243 (452)
T ss_pred CcEEEEEEeC--CHHHHHHHHHHHHHHHHCCeeE--EEEEEcCCCCCHHHHHHHHHHHhhcCCCeEEEEEcC----hHHH
Confidence 4689999764 3345677888888999988741 222333 366677777788765456888876653 2333
Q ss_pred HHHHHHHHHHHH
Q 027801 152 YDAVANSAASGV 163 (218)
Q Consensus 152 ~e~Va~~vs~gL 163 (218)
..++.++.-.|+
T Consensus 244 ~~~~~~a~~~g~ 255 (452)
T cd06362 244 RGLLAAAKRLNA 255 (452)
T ss_pred HHHHHHHHHcCC
Confidence 344444444443
No 353
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=43.00 E-value=66 Score=29.07 Aligned_cols=66 Identities=18% Similarity=0.067 Sum_probs=46.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
...||+||... ......+.+...+.+++.|++. +...+ -+|.-+.--.+.++. ..+.|+|+..+.-
T Consensus 139 ~~~kvaiv~~~--~~~g~~~~~~~~~~~~~~G~~v--v~~~~~~~~~~D~~~~v~~i~-~~~pd~V~~~~~~ 205 (351)
T cd06334 139 KGKKIALVYHD--SPFGKEPIEALKALAEKLGFEV--VLEPVPPPGPNDQKAQWLQIR-RSGPDYVILWGWG 205 (351)
T ss_pred CCCeEEEEeCC--CccchhhHHHHHHHHHHcCCee--eeeccCCCCcccHHHHHHHHH-HcCCCEEEEeccc
Confidence 35799999874 4466778888889999999852 22223 456677766667764 4579999877663
No 354
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=42.73 E-value=1.3e+02 Score=24.61 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=22.3
Q ss_pred HHHHHHHHCCCCCCCeEEEEeCCcchHHHH
Q 027801 96 GALETFKKYSVKEENIDVVWVPGSFEIGVV 125 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~a 125 (218)
.-.+.|+++|++ .++-+||...+|+.
T Consensus 5 ~l~~~L~~~Gv~----~vFgipG~~~~~l~ 30 (164)
T cd07039 5 VIVETLENWGVK----RVYGIPGDSINGLM 30 (164)
T ss_pred HHHHHHHHCCCC----EEEEcCCCchHHHH
Confidence 446789999997 79999999999985
No 355
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=42.70 E-value=2.1e+02 Score=24.15 Aligned_cols=75 Identities=9% Similarity=0.144 Sum_probs=39.2
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAV 155 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~V 155 (218)
+||+||.-.+... ..-.+.|++.|+. ++++ +. | ..+ ..||++|.-| |..+..++-
T Consensus 1 ~~~~v~~~~~~~~------~~~~~~l~~~G~~---~~~~--~~----~---~~~---~~~d~iii~G----~~~~~~~~~ 55 (200)
T PRK13143 1 MMIVIIDYGVGNL------RSVSKALERAGAE---VVIT--SD----P---EEI---LDADGIVLPG----VGAFGAAME 55 (200)
T ss_pred CeEEEEECCCccH------HHHHHHHHHCCCe---EEEE--CC----H---HHH---ccCCEEEECC----CCCHHHHHH
Confidence 4788887666554 1224556667863 4444 31 2 122 4799999888 222221111
Q ss_pred HHHHHHHHHHhchhcCCceE
Q 027801 156 ANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 156 a~~vs~gLm~lsL~~~vPVi 175 (218)
...-.+.+++-.++.++||.
T Consensus 56 ~~~~~~~~i~~~~~~~~Pil 75 (200)
T PRK13143 56 NLSPLRDVILEAARSGKPFL 75 (200)
T ss_pred HHHHHHHHHHHHHHcCCCEE
Confidence 11223334444557788864
No 356
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=42.69 E-value=79 Score=29.05 Aligned_cols=65 Identities=9% Similarity=0.013 Sum_probs=44.0
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC----CcchHHHHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP----GSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP----GA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.-.|++|+.. +......+++...+.|++.|+.. +...++| |..++--.++++ +..+.|+||..+-
T Consensus 175 ~~k~vaii~~--~~~~g~~~~~~~~~~l~~~gi~i--~~~~~~~~~~~~~~d~~~~l~~i-~~~~~dvIil~~~ 243 (410)
T cd06363 175 GWNWVAFLGS--DDEYGRDGLQLFSELIANTGICI--AYQGLIPLDTDPETDYQQILKQI-NQTKVNVIVVFAS 243 (410)
T ss_pred CCcEEEEEEe--CChhHHHHHHHHHHHHHHCCeEE--EEEEEecCCCchHHHHHHHHHHH-hcCCCeEEEEEcC
Confidence 3468999975 56666788888899999998742 2223343 455666666776 4557898886554
No 357
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=42.41 E-value=87 Score=29.70 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=50.3
Q ss_pred chhhhhhHhhhcccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEE-EeCCcchHHHHHHHhhhcCC
Q 027801 56 SFVQTEAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV-WVPGSFEIGVVAQQLGKSGK 134 (218)
Q Consensus 56 ~~~~~~a~~~~~~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv-~VPGA~ELP~aak~L~~~~~ 134 (218)
...|..||-.+-..+ .-.+|++|.. +.+....+++...+.+++.|+.....+.+ ..|+.-++.-.++++.+..+
T Consensus 158 d~~qa~ai~~ll~~~---~W~~Vaii~~--~~~yG~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~~~~ 232 (458)
T cd06375 158 DFYQAKAMAEILRFF---NWTYVSTVAS--EGDYGETGIEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKLLQKPN 232 (458)
T ss_pred cHHHHHHHHHHHHHC---CCeEEEEEEe--CchHHHHHHHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHHhccCC
Confidence 334555555443222 3468999975 34455667778888888888742111111 13466677777888765568
Q ss_pred ccEEEEEee
Q 027801 135 YTAVLCIGA 143 (218)
Q Consensus 135 yDaVIaLG~ 143 (218)
.|+||..|-
T Consensus 233 a~vVvl~~~ 241 (458)
T cd06375 233 ARVVVLFTR 241 (458)
T ss_pred CEEEEEecC
Confidence 898887664
No 358
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=42.15 E-value=94 Score=27.15 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=43.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..||++|... ..-.+.+.+...+.+++.|+. -+...++ |+.-+.--.++++. ..+.|+|+..+.
T Consensus 141 ~~~v~~v~~~--~~~g~~~~~~~~~~~~~~g~~--v~~~~~~~~~~~d~~~~v~~l~-~~~~d~i~~~~~ 205 (345)
T cd06338 141 PKKVAILYAD--DPFSQDVAEGAREKAEAAGLE--VVYDETYPPGTADLSPLISKAK-AAGPDAVVVAGH 205 (345)
T ss_pred CceEEEEecC--CcccHHHHHHHHHHHHHcCCE--EEEEeccCCCccchHHHHHHHH-hcCCCEEEECCc
Confidence 5789999753 444567778888899999975 2333333 46667666777774 567898886654
No 359
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=41.91 E-value=59 Score=27.03 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=22.7
Q ss_pred HHHHHHHCCCCCCCeEEEEeCCcchHHHHHH
Q 027801 97 ALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (218)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak 127 (218)
-.+.|+++|++ .++-+||...+|+.-.
T Consensus 3 l~~~L~~~Gv~----~vFg~pG~~~~~l~~a 29 (162)
T cd07037 3 LVEELKRLGVR----DVVISPGSRSAPLALA 29 (162)
T ss_pred HHHHHHHCCCC----EEEECCCcchHHHHHH
Confidence 35789999997 7999999999998644
No 360
>PRK08142 acetyl-CoA acetyltransferase; Provisional
Probab=41.76 E-value=67 Score=30.35 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 027801 88 LVTKLLLEGALETFKKYSVKEENIDVVWV 116 (218)
Q Consensus 88 ~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V 116 (218)
...+.+.+.+.+.|++.|++.++||-+.+
T Consensus 24 ~~~~L~~eA~~~Al~DAgl~~~dID~~~~ 52 (388)
T PRK08142 24 SVAQLHAEVAKGALADAGLSLADVDGYFC 52 (388)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 45566666777777777776666776655
No 361
>PRK11249 katE hydroperoxidase II; Provisional
Probab=41.42 E-value=82 Score=32.96 Aligned_cols=107 Identities=16% Similarity=0.091 Sum_probs=59.4
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-----CCcchHHHHHHHhhh---cCCccEEEEEeee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-----PGSFEIGVVAQQLGK---SGKYTAVLCIGAV 144 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-----PGA~ELP~aak~L~~---~~~yDaVIaLG~V 144 (218)
..+.||+|+++. .....-+.+-.+.|++.|+ .++++.. -++.-+.+.+..... +..||+|+..|
T Consensus 595 ~~gRKIaILVaD---G~d~~ev~~~~daL~~AGa---~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPG-- 666 (752)
T PRK11249 595 IKGRKVAILLND---GVDAADLLAILKALKAKGV---HAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPG-- 666 (752)
T ss_pred ccccEEEEEecC---CCCHHHHHHHHHHHHHCCC---EEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECC--
Confidence 478899999875 2233445677888888886 3555542 222222222332222 34699999988
Q ss_pred eeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCC
Q 027801 145 VRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGG 193 (218)
Q Consensus 145 IrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~ 193 (218)
|...-..+.-+.-...+.+=..++++||+. .| +-.+.++.+|.
T Consensus 667 --G~~~~~~L~~d~~al~fL~eaykHgK~IAA---iC-aG~~LLaaAGL 709 (752)
T PRK11249 667 --GKANIADLADNGDARYYLLEAYKHLKPIAL---AG-DARKLKAALKL 709 (752)
T ss_pred --CchhHHHHhhCHHHHHHHHHHHHcCCEEEE---eC-ccHHHHHhcCC
Confidence 433333333344445555555677888763 12 22455666654
No 362
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=41.39 E-value=1.1e+02 Score=26.69 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=5.0
Q ss_pred HHHHHHHHCCC
Q 027801 96 GALETFKKYSV 106 (218)
Q Consensus 96 gA~~~L~~~Gv 106 (218)
.+++.|.+.|+
T Consensus 48 ~~i~~~~~~g~ 58 (258)
T cd06353 48 RVLRELAAQGY 58 (258)
T ss_pred HHHHHHHHcCC
Confidence 34444444443
No 363
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=41.35 E-value=1.3e+02 Score=25.85 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=42.6
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC-CcchHHHHHHHhhhcCCccEEEEEe
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-GSFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP-GA~ELP~aak~L~~~~~yDaVIaLG 142 (218)
..||+++.... .....+.+...+.+++.|++ -.....+| |.-+.--.++++ +..+.|+||..|
T Consensus 135 ~~~v~~v~~~~--~~g~~~~~~~~~~~~~~g~~--v~~~~~~~~~~~d~~~~l~~i-~~~~~~~vi~~~ 198 (334)
T cd06342 135 AKKVAIIDDKT--AYGQGLADEFKKALKAAGGK--VVAREGTTDGATDFSAILTKI-KAANPDAVFFGG 198 (334)
T ss_pred CCEEEEEeCCc--chhhHHHHHHHHHHHHcCCE--EEEEecCCCCCccHHHHHHHH-HhcCCCEEEEcC
Confidence 45899998764 45667777888888888874 23333344 667776667776 345688887544
No 364
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=41.17 E-value=1.1e+02 Score=26.76 Aligned_cols=7 Identities=43% Similarity=0.368 Sum_probs=3.0
Q ss_pred CccEEEE
Q 027801 134 KYTAVLC 140 (218)
Q Consensus 134 ~yDaVIa 140 (218)
++|+||.
T Consensus 67 ~V~~iig 73 (341)
T cd06341 67 KVVAVVG 73 (341)
T ss_pred CceEEEe
Confidence 4444443
No 365
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=41.01 E-value=53 Score=27.93 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=27.1
Q ss_pred CEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC
Q 027801 76 LRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVP 117 (218)
Q Consensus 76 ~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP 117 (218)
+||.+|.+.-+ .-.+..|++.+.+.|.+.|.+-+.+++...|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~ 43 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFA 43 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCC
Confidence 36666665544 5667788888888888888754444444333
No 366
>PRK05665 amidotransferase; Provisional
Probab=40.92 E-value=1.2e+02 Score=26.77 Aligned_cols=102 Identities=15% Similarity=0.041 Sum_probs=54.6
Q ss_pred CEEEEEEcccC-HHHHHHH---HHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 76 LRFALVVARFN-ELVTKLL---LEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 76 ~RIaIV~Srfn-~~It~~L---l~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
+||+|+.+.-- .++.+.. -+-..+.|.+.+.. ..+.++.|. .-|+|.. ...|||+|..|--- +-+..
T Consensus 3 mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~-~~~~~~~~~-~~~~p~~------~~~~dgiiitGs~~-~v~~~ 73 (240)
T PRK05665 3 LRICILETDVLRPELVAQYQGYGRMFEQLFARQPIA-AEFVVYNVV-QGDYPAD------DEKFDAYLVTGSKA-DSFGT 73 (240)
T ss_pred eEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCC-ceEEEEecc-CCCCCCC------cccCCEEEECCCCC-Ccccc
Confidence 57899977655 4444321 11233444555543 235565533 3345541 24799999999852 22333
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhC
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG 192 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag 192 (218)
+..+ .-...+++-.++.++| ++||=- =-|.+++|-
T Consensus 74 ~pwi--~~l~~~i~~~~~~~~P-ilGIC~---GhQlla~Al 108 (240)
T PRK05665 74 DPWI--QTLKTYLLKLYERGDK-LLGVCF---GHQLLALLL 108 (240)
T ss_pred chHH--HHHHHHHHHHHhcCCC-EEEEeH---HHHHHHHHh
Confidence 3333 3334555555777899 556633 245555553
No 367
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=40.88 E-value=1.1e+02 Score=26.73 Aligned_cols=65 Identities=15% Similarity=0.061 Sum_probs=46.2
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..|++++.. +....+.+.+...+.+++.|++.. .+...-++.-+..-.++++. ..+.|+|+..+.
T Consensus 135 ~~~v~~i~~--~~~~g~~~~~~~~~~~~~~G~~vv-~~~~~~~~~~d~~~~v~~l~-~~~~d~v~~~~~ 199 (334)
T cd06327 135 GKKWFFLTA--DYAFGHSLERDARKVVKANGGKVV-GSVRHPLGTSDFSSYLLQAQ-ASGADVLVLANA 199 (334)
T ss_pred CCeEEEEec--chHHhHHHHHHHHHHHHhcCCEEc-CcccCCCCCccHHHHHHHHH-hCCCCEEEEecc
Confidence 578998874 556677888999999999997532 12223455667777788874 456899888775
No 368
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=40.82 E-value=1.6e+02 Score=28.83 Aligned_cols=96 Identities=13% Similarity=0.271 Sum_probs=54.8
Q ss_pred CCCCEEEEEEcccC-HHHHHHHH-HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 73 NEGLRFALVVARFN-ELVTKLLL-EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 73 ~~~~RIaIV~Srfn-~~It~~Ll-~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
+...|+.|++--.- +.-..+.. +.....|+++|++ ++++.--.+-+.--.++.+. ..+||+|||+| |+=.
T Consensus 109 ~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~---~~v~~T~~~ghA~~la~~~~-~~~~D~VV~vG----GDGT 180 (481)
T PLN02958 109 GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQ---LTIQETKYQLHAKEVVRTMD-LSKYDGIVCVS----GDGI 180 (481)
T ss_pred cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCe---EEEEeccCccHHHHHHHHhh-hcCCCEEEEEc----CCCH
Confidence 45678888875442 12222333 3455688888874 56665555555555555553 35699999998 4433
Q ss_pred hHHHHHHHHHHHHHHhch-hcCCceEEEEcCC
Q 027801 151 HYDAVANSAASGVLSAGV-NSGVPCIFGVLTC 181 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL-~~~vPVifGVLT~ 181 (218)
= +++..||+.-.- +.+..+-.|||-+
T Consensus 181 l-----nEVvNGL~~~~~~~~~~~~pLGiIPa 207 (481)
T PLN02958 181 L-----VEVVNGLLEREDWKTAIKLPIGMVPA 207 (481)
T ss_pred H-----HHHHHHHhhCccccccccCceEEecC
Confidence 2 345677764311 1123344677654
No 369
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=40.80 E-value=3e+02 Score=26.35 Aligned_cols=85 Identities=18% Similarity=0.143 Sum_probs=56.7
Q ss_pred HHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEE
Q 027801 97 ALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
..+.|.+.|+++..+.++ +|.-+ ..+.|.++.++|.|.-- |.|.-...|+.+++.-+..+.++.+=---.
T Consensus 182 ~~~~~~~aglP~gv~~~v--~g~~~---~~~~L~~~~~vd~V~fT-----Gs~~~g~~i~~~aa~~~~~~~lElGGk~p~ 251 (474)
T cd07130 182 VARVLEKNGLPGAIASLV--CGGAD---VGEALVKDPRVPLVSFT-----GSTAVGRQVGQAVAARFGRSLLELGGNNAI 251 (474)
T ss_pred HHHHHHhcCCCCCcEEEE--eCChh---HHHHHhcCCCCCEEEEE-----CchHHHHHHHHHHHhcCCCEEEEcCCCCeE
Confidence 445667889987665554 66433 35777788899988654 567788888888887777777775533333
Q ss_pred EEcCCCCHHHHHHhh
Q 027801 177 GVLTCDNMDQALNRA 191 (218)
Q Consensus 177 GVLT~~n~eQA~~Ra 191 (218)
-|+-..|.+.|.+++
T Consensus 252 iV~~dadl~~Aa~~i 266 (474)
T cd07130 252 IVMEDADLDLAVRAV 266 (474)
T ss_pred EECCCCCHHHHHHHH
Confidence 344446788876553
No 370
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=40.72 E-value=1.8e+02 Score=24.82 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=43.2
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH--H
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY--D 153 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~--e 153 (218)
+||+||.--=... ....+.|++.|.. +++.++.-. +.+ .+||++|..|. |.+..+ .
T Consensus 2 ~~~~iid~g~gn~------~s~~~al~~~g~~---~~v~~~~~~-------~~l---~~~d~lIlpG~---~~~~~~~~~ 59 (209)
T PRK13146 2 MTVAIIDYGSGNL------RSAAKALERAGAG---ADVVVTADP-------DAV---AAADRVVLPGV---GAFADCMRG 59 (209)
T ss_pred CeEEEEECCCChH------HHHHHHHHHcCCC---ccEEEECCH-------HHh---cCCCEEEECCC---CcHHHHHHH
Confidence 4778775332222 3445667777763 345554321 222 58999999993 444333 2
Q ss_pred HHHHHHHHHHHHhchhcCCceE
Q 027801 154 AVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVi 175 (218)
+-.......|.+...+.++||.
T Consensus 60 l~~~~~~~~~~~~~~~~~~Pvl 81 (209)
T PRK13146 60 LRAVGLGEAVIEAVLAAGRPFL 81 (209)
T ss_pred HHHCCcHHHHHHHHHhCCCcEE
Confidence 1111234566666666788864
No 371
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=40.61 E-value=55 Score=28.27 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=36.6
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEE
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVL 139 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVI 139 (218)
|+|| .+.|++ .+++.|++.|++. +++.+.|+++.+.++.-+.-+.+..++..++|-+|
T Consensus 1 isiI-~c~n~~---~~~~~~~~~i~~~~~~~~~~i~i~~~~~~~s~~~~yN~a~~~a~~~ylv 59 (217)
T PF13712_consen 1 ISII-ICVNDE---ELYEECLRSIKRLIGPPGELIEIDNVRNAKSMAAAYNEAMEKAKAKYLV 59 (217)
T ss_dssp EEEE-EEES-H---HHHHHHHHHHHHTT--TEEEEEEE-SSS-S-TTTHHHHHGGG--SSEEE
T ss_pred CEEE-EEECCH---HHHHHHHHHHHhhCCCCceEEEEeccCCCcCHHHHHHHHHHhCCCCEEE
Confidence 3444 445544 4566677777777 46667889999999999999999999888888444
No 372
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=40.40 E-value=2.2e+02 Score=27.14 Aligned_cols=85 Identities=24% Similarity=0.183 Sum_probs=55.6
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
.+.|.+.|+++..+.++ ||.-+ -+.+.|..+.++|.|.-- |.|.-...|...++..+..+.++.+=.--.-
T Consensus 182 ~~~~~~aGlP~gvv~vv--~g~~~--~~~~~l~~~~~v~~v~fT-----Gs~~~g~~i~~~aa~~~~~~~lElGGk~~~i 252 (473)
T cd07097 182 VEILEEAGLPAGVFNLV--MGSGS--EVGQALVEHPDVDAVSFT-----GSTAVGRRIAAAAAARGARVQLEMGGKNPLV 252 (473)
T ss_pred HHHHHHcCCCCcceEEe--ccCch--HHHHHHhcCCCCCEEEEE-----CcHHHHHHHHHHHhccCCcEEEECCCCCeeE
Confidence 46677888876555554 56421 144667777789987655 5678888888888877777777755333333
Q ss_pred EcCCCCHHHHHHhh
Q 027801 178 VLTCDNMDQALNRA 191 (218)
Q Consensus 178 VLT~~n~eQA~~Ra 191 (218)
|+-..|.+.|.+++
T Consensus 253 V~~dadl~~aa~~i 266 (473)
T cd07097 253 VLDDADLDLAVECA 266 (473)
T ss_pred ECCCCCHHHHHHHH
Confidence 55556788876664
No 373
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=40.37 E-value=35 Score=31.46 Aligned_cols=68 Identities=16% Similarity=0.119 Sum_probs=39.8
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEE-EeCCcchHHHHHH--HhhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV-WVPGSFEIGVVAQ--QLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv-~VPGA~ELP~aak--~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.|+.||..+.-.. ....+...+.|++.|+. +.++ .|++-=.+-.+-+ ..++..++|.||++| |.+..+
T Consensus 25 ~~~liv~~~~~~~--~~~~~~v~~~L~~~g~~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiG----GGSviD 95 (370)
T cd08192 25 KRPLIVTDPGLAA--LGLVARVLALLEDAGLA---AALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFG----GGSALD 95 (370)
T ss_pred CeEEEEcCcchhh--CccHHHHHHHHHHcCCe---EEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeC----CchHHH
Confidence 4888887654322 12456677788888874 4444 2433322222222 224667899999999 566555
No 374
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=40.15 E-value=68 Score=30.35 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=11.8
Q ss_pred hhhcCCccEEEEEeee
Q 027801 129 LGKSGKYTAVLCIGAV 144 (218)
Q Consensus 129 L~~~~~yDaVIaLG~V 144 (218)
+++++.+|-|+++|+=
T Consensus 104 ~I~sG~ad~vLVvg~e 119 (392)
T PRK06065 104 HVASGLCQKVLAVAEE 119 (392)
T ss_pred HHhCCCCCEEEEEEee
Confidence 3467888888888864
No 375
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.70 E-value=69 Score=29.34 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=52.6
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC-cchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG-SFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDA 154 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG-A~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~ 154 (218)
.||+||.-. .+.-...+++...+.|+++|+. +.+..... ..+.+...+. ....+|.||++|= -.|.+
T Consensus 4 kkv~lI~n~-~~~~~~~~~~~i~~~L~~~g~~---v~v~~~~~~~~~~~~~~~~--~~~~~d~vi~~GG---DGT~l--- 71 (305)
T PRK02645 4 KQVIIAYKA-GSSQAKEAAERCAKQLEARGCK---VLMGPSGPKDNPYPVFLAS--ASELIDLAIVLGG---DGTVL--- 71 (305)
T ss_pred CEEEEEEeC-CCHHHHHHHHHHHHHHHHCCCE---EEEecCchhhccccchhhc--cccCcCEEEEECC---cHHHH---
Confidence 368888666 4455667788889999998874 22322211 1112211111 1246999999983 12222
Q ss_pred HHHHHHHHHHHhchhcCCceE-------EEEcCCCC--H--HHHHHhh
Q 027801 155 VANSAASGVLSAGVNSGVPCI-------FGVLTCDN--M--DQALNRA 191 (218)
Q Consensus 155 Va~~vs~gLm~lsL~~~vPVi-------fGVLT~~n--~--eQA~~Ra 191 (218)
.+++.+. ..++||+ .|.|+... . +++++|.
T Consensus 72 ---~~~~~~~----~~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i 112 (305)
T PRK02645 72 ---AAARHLA----PHDIPILSVNVGGHLGFLTHPRDLLQDESVWDRL 112 (305)
T ss_pred ---HHHHHhc----cCCCCEEEEecCCcceEecCchhhcchHHHHHHH
Confidence 2222222 4577764 25677532 1 6777774
No 376
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=39.61 E-value=3e+02 Score=26.15 Aligned_cols=86 Identities=17% Similarity=0.068 Sum_probs=53.6
Q ss_pred HHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceE
Q 027801 96 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
-..+.|++.|+++..+.+ |||.-| +.+.|..+.++|+|.-- |.+..-..|.+.+.+.+..+.++.+=.--
T Consensus 169 ~~~~~l~~aGlP~gvv~~--v~g~~~---~~~~L~~~~~v~~V~ft-----Gs~~~g~~v~~~a~~~~~~~~lelgG~~~ 238 (465)
T cd07098 169 IIRECLAACGHDPDLVQL--VTCLPE---TAEALTSHPVIDHITFI-----GSPPVGKKVMAAAAESLTPVVLELGGKDP 238 (465)
T ss_pred HHHHHHHhcCCCCCeEEE--EECCHH---HHHHHhcCCCCCEEEEE-----CCHHHHHHHHHHHHhcCCeEEEECCCCCe
Confidence 344566788887544333 576423 34667777778887655 55677777888877766666666553333
Q ss_pred EEEcCCCCHHHHHHhh
Q 027801 176 FGVLTCDNMDQALNRA 191 (218)
Q Consensus 176 fGVLT~~n~eQA~~Ra 191 (218)
.-|+-..|.++|.+.+
T Consensus 239 ~iV~~dadl~~a~~~i 254 (465)
T cd07098 239 AIVLDDADLDQIASII 254 (465)
T ss_pred EEECCCCCHHHHHHHH
Confidence 3344556778775553
No 377
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=39.51 E-value=2.3e+02 Score=26.95 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=54.0
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
.+.|.+.|+++..+.+ |+|.-| +...|+.+.++|.|.--| .+.-...|+..+..-+..+.++.+=.=-.-
T Consensus 184 ~~~~~~aglP~gv~~~--v~g~~~---~~~~l~~~~~i~~v~ftG-----s~~~g~~v~~~~~~~~~~~~lElGG~np~i 253 (471)
T cd07139 184 AEAAEEAGLPPGVVNV--VPADRE---VGEYLVRHPGVDKVSFTG-----STAAGRRIAAVCGERLARVTLELGGKSAAI 253 (471)
T ss_pred HHHHHHcCCCCCcEEE--EeCCHH---HHHHHhcCCCCCEEEEEC-----cHHHHHHHHHHHHhcCCEEEEEcCCCCeeE
Confidence 6678888988655555 467433 346677777899877654 677777788877776666666654222222
Q ss_pred EcCCCCHHHHHHhh
Q 027801 178 VLTCDNMDQALNRA 191 (218)
Q Consensus 178 VLT~~n~eQA~~Ra 191 (218)
|+-..|.++|.+++
T Consensus 254 V~~dADl~~aa~~i 267 (471)
T cd07139 254 VLDDADLDAAVPGL 267 (471)
T ss_pred ECCCCCHHHHHHHH
Confidence 44445788876664
No 378
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=39.50 E-value=75 Score=26.18 Aligned_cols=7 Identities=29% Similarity=0.696 Sum_probs=3.0
Q ss_pred HHHHhhC
Q 027801 186 QALNRAG 192 (218)
Q Consensus 186 QA~~Rag 192 (218)
++++++|
T Consensus 172 ~~~~~vg 178 (232)
T cd06437 172 ECIEDAG 178 (232)
T ss_pred HHHHHhC
Confidence 3444444
No 379
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=39.49 E-value=1.3e+02 Score=26.19 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=46.7
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeE-EEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENID-VVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~-vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..|++|+.. +......+.+...+.+++.|+.. +. ...-||.-+.--.++++. ..+.|+|+..+.
T Consensus 137 ~~~vail~~--~~~~g~~~~~~~~~~~~~~G~~v--v~~~~~~~~~~d~~~~v~~l~-~~~pd~v~~~~~ 201 (312)
T cd06346 137 YKSVATTYI--NNDYGVGLADAFTKAFEALGGTV--TNVVAHEEGKSSYSSEVAAAA-AGGPDALVVIGY 201 (312)
T ss_pred CCeEEEEEc--cCchhhHHHHHHHHHHHHcCCEE--EEEEeeCCCCCCHHHHHHHHH-hcCCCEEEEecc
Confidence 469999975 34567788889999999999852 22 233457778777778874 467899987765
No 380
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=39.46 E-value=1.4e+02 Score=29.81 Aligned_cols=123 Identities=13% Similarity=0.123 Sum_probs=79.5
Q ss_pred CCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhh---hcCCccEEEEEeeeeeCC
Q 027801 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLG---KSGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 72 ~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~---~~~~yDaVIaLG~VIrGe 148 (218)
+....+|+|+.+.-.+. .-.+.|.+.|++.|++ + .+.|-++.-.|--...++ +..+++.+||.. |-
T Consensus 407 ~~~~~~v~i~~gs~sd~---~~~~~~~~~l~~~g~~---~-~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~a----g~ 475 (577)
T PLN02948 407 PKGTPLVGIIMGSDSDL---PTMKDAAEILDSFGVP---Y-EVTIVSAHRTPERMFSYARSAHSRGLQVIIAGA----GG 475 (577)
T ss_pred CCCCCeEEEEECchhhH---HHHHHHHHHHHHcCCC---e-EEEEECCccCHHHHHHHHHHHHHCCCCEEEEEc----Cc
Confidence 45567899999998877 6678999999999997 3 377999999998887775 335688766542 66
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcCC--C-CHHHHHHhhCC--------CCCCcHHHHHHHHHHHHHHHhh
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLTC--D-NMDQALNRAGG--------KSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~--~-n~eQA~~Rag~--------k~gnKG~EAA~aAleM~~L~~~ 215 (218)
..|--=|. +-.+.+|||-.=.-. - -++--+.-..- -.-|.|..||..|.+|+.+.+.
T Consensus 476 ~~~l~~~~----------a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~~~~~aa~~a~~i~~~~~~ 543 (577)
T PLN02948 476 AAHLPGMV----------ASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGASDP 543 (577)
T ss_pred cccchHHH----------hhccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEecCChHHHHHHHHHHHhcCCH
Confidence 66654222 123566766432211 1 12221111111 1225689999999999887553
No 381
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=39.40 E-value=1.3e+02 Score=24.76 Aligned_cols=47 Identities=11% Similarity=-0.043 Sum_probs=28.9
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 85 FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 85 fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
|+...+..+. +.|++.|+ +++++...-..|.|. +...|||||..|-.
T Consensus 6 ~~~~~~~~~~----~~l~~~G~---~~~~~~~~~~~~~~~------~~~~~dgvil~gG~ 52 (184)
T cd01743 6 NYDSFTYNLV----QYLRELGA---EVVVVRNDEITLEEL------ELLNPDAIVISPGP 52 (184)
T ss_pred CCCccHHHHH----HHHHHcCC---ceEEEeCCCCCHHHH------hhcCCCEEEECCCC
Confidence 4444444432 44556687 477777766666542 22479999999775
No 382
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=39.28 E-value=1.6e+02 Score=25.00 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=11.8
Q ss_pred HHHhhhcCCccEEEEEe
Q 027801 126 AQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 126 ak~L~~~~~yDaVIaLG 142 (218)
+.++++..++|.|.+-+
T Consensus 79 ~~~~~~~~~~Divh~~~ 95 (335)
T cd03802 79 AERALAAGDFDIVHNHS 95 (335)
T ss_pred HHHHHhcCCCCEEEecC
Confidence 34455678899988755
No 383
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=39.27 E-value=1.1e+02 Score=24.31 Aligned_cols=87 Identities=20% Similarity=0.165 Sum_probs=42.8
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC-----CcchHHHHHHHhhh---cCCccEEEEEeeeeeCC
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-----GSFEIGVVAQQLGK---SGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP-----GA~ELP~aak~L~~---~~~yDaVIaLG~VIrGe 148 (218)
||+|++..-.+. .=+.+..+.|.+.|+ +++++... ++..+.+......+ ...||+++..| |.
T Consensus 1 ~v~il~~~g~~~---~e~~~~~~~l~~ag~---~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~G----g~ 70 (166)
T TIGR01382 1 KLLVLTTDEFED---SELLYPLDRLREAGH---EVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPG----GR 70 (166)
T ss_pred CEEEEecCCchH---HHHHHHHHHHHHCCC---EEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECC----CC
Confidence 466655332222 123466788888776 35555432 23333333332222 23699999888 32
Q ss_pred chhHHHHH-HHHHHHHHHhchhcCCceE
Q 027801 149 TTHYDAVA-NSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 149 T~H~e~Va-~~vs~gLm~lsL~~~vPVi 175 (218)
. ...+-. ..+.+-|.+. .+.++||+
T Consensus 71 ~-~~~~~~~~~l~~~l~~~-~~~~~~i~ 96 (166)
T TIGR01382 71 A-PEYLRLNNKAVRLVREF-VEKGKPVA 96 (166)
T ss_pred C-HHHhccCHHHHHHHHHH-HHcCCEEE
Confidence 2 222222 2344444444 45677765
No 384
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=39.10 E-value=3.6e+02 Score=25.88 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=53.8
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
.+.|.+.|+++..+.+ |||.- +-+.+.|..+.++|.|.-- |.+.-...|+..+...+..+.++.+=---.-
T Consensus 182 ~~~~~~aGlP~gvv~~--v~g~~--~~~~~~l~~~~~v~~V~fT-----GS~~~G~~i~~~aa~~l~~~~lElGGknp~i 252 (488)
T TIGR02299 182 AEIAKEAGLPDGVFNL--VHGFG--EEAGKALVAHPDVKAVSFT-----GETATGSIIMRNGADTLKRFSMELGGKSPVI 252 (488)
T ss_pred HHHHHHcCcChhheeE--EeCCc--hHHHHHHhcCCCcCEEEEE-----CcHHHHHHHHHHHHhcCCeEEEEcCCCCeEE
Confidence 5677888887655554 45521 1134567677778887654 5566677788877777777777755322233
Q ss_pred EcCCCCHHHHHHhh
Q 027801 178 VLTCDNMDQALNRA 191 (218)
Q Consensus 178 VLT~~n~eQA~~Ra 191 (218)
|+-..|.++|.+++
T Consensus 253 V~~dAdl~~A~~~i 266 (488)
T TIGR02299 253 VFDDADLERALDAV 266 (488)
T ss_pred ECCCCCHHHHHHHH
Confidence 44446888887664
No 385
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.00 E-value=2.3e+02 Score=23.58 Aligned_cols=96 Identities=21% Similarity=0.114 Sum_probs=56.4
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchHH---HHHHHhhh-cCCccEEEEEeeeeeCCc
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIG---VVAQQLGK-SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~ELP---~aak~L~~-~~~yDaVIaLG~VIrGeT 149 (218)
..||+++...-... ...-.+|..+.++++ ++. .....+.+.++.- -+++++++ ..++|||+|.
T Consensus 121 ~~~i~~i~g~~~~~-~~~R~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------- 188 (271)
T cd06321 121 KGNVAILNGPPVSA-VLDRVAGCKAALAKYPGIK---LLSDDQNGKGSRDGGLRVMQGLLTRFPKLDGVFAI-------- 188 (271)
T ss_pred CceEEEEeCCCCch-HHHHHHHHHHHHHhCCCcE---EEeeecCCCCChhhHHHHHHHHHHhCCCCCEEEEC--------
Confidence 45899997764433 345579999999988 442 1112234443321 13344444 4568999883
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALN 189 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~ 189 (218)
.|.++..+.+++.+..++ ++ .|++.++.+.+..
T Consensus 189 --~d~~a~g~~~al~~~g~~-di----~v~g~d~~~~~~~ 221 (271)
T cd06321 189 --NDPTAIGADLAAKQAGRN-DI----KITSVDGAPDAEK 221 (271)
T ss_pred --CchhHHHHHHHHHHcCCC-Cc----EEEEecCCHHHHH
Confidence 345677777888887773 33 4445555554443
No 386
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=38.97 E-value=1.9e+02 Score=26.51 Aligned_cols=86 Identities=8% Similarity=-0.028 Sum_probs=52.6
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC-CcchHHHHHHHhhhcCCccEEEEEeeee-eCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-GSFEIGVVAQQLGKSGKYTAVLCIGAVV-RGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP-GA~ELP~aak~L~~~~~yDaVIaLG~VI-rGeT~H~ 152 (218)
-.||+||... .+......++..+.|++.|+. ...+..+| +.-++=-.++++-..++.|.||..+-.. -|.....
T Consensus 132 w~~vaii~~~--~~~~~~~~~~l~~~l~~~gi~--v~~~~~~~~~~~d~~~~L~~lk~~~~~~viv~~~~~~~~~~~~~~ 207 (382)
T cd06371 132 WAHVAIVSSP--QDIWVETAQKLASALRAHGLP--VGLVTSMGPDEKGAREALKKVRSADRVRVVIMCMHSVLIGGEEQR 207 (382)
T ss_pred CeEEEEEEec--ccchHHHHHHHHHHHHHCCCc--EEEEEEecCCHHHHHHHHHHHhcCCCcEEEEEEeeccccCcHHHH
Confidence 3589998643 222234566777788888874 22234455 7667666777775555689999876532 1223445
Q ss_pred HHHHHHHHHHHH
Q 027801 153 DAVANSAASGVL 164 (218)
Q Consensus 153 e~Va~~vs~gLm 164 (218)
.++.++--.|++
T Consensus 208 ~i~~qa~~~Gm~ 219 (382)
T cd06371 208 LLLETALEMGMT 219 (382)
T ss_pred HHHHHHHHcCCc
Confidence 666666666665
No 387
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=38.87 E-value=81 Score=28.01 Aligned_cols=61 Identities=20% Similarity=0.315 Sum_probs=35.4
Q ss_pred HHHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 126 AQQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 126 ak~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
++.++ ..++||++++|.. ||-.+... =-..+.+-..+. .+..+||+.||-. .+.+++++++
T Consensus 28 i~~l~-~~Gv~gi~~~Gs~--GE~~~ls~~Er~~~~~~~~~~-~~~~~~vi~gv~~-~~~~~~i~~a 89 (292)
T PRK03170 28 VDYLI-ANGTDGLVVVGTT--GESPTLTHEEHEELIRAVVEA-VNGRVPVIAGTGS-NSTAEAIELT 89 (292)
T ss_pred HHHHH-HcCCCEEEECCcC--CccccCCHHHHHHHHHHHHHH-hCCCCcEEeecCC-chHHHHHHHH
Confidence 34443 3679999999887 77665410 011122222222 2347899999987 4556666654
No 388
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=38.87 E-value=1.3e+02 Score=24.95 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=39.9
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHHHHHHhhhcCCccEEEEE
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVVAQQLGKSGKYTAVLCI 141 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~aak~L~~~~~yDaVIaL 141 (218)
.+.||+|..+.-.+. .-.+.|.+.|.....+.+|. +|-..+.+...+.+. .+++|+|+..
T Consensus 124 ~~~~ili~~~~~~~~-------~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~-~~~~d~ivft 184 (249)
T PRK05928 124 KGKRVLYLRGNGGRE-------VLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQ-SGEVDAVIFT 184 (249)
T ss_pred CCCEEEEECCCCCHH-------HHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHH-hCCCCEEEEC
Confidence 577899987776544 33456777887655666663 566666665556554 5789998753
No 389
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=38.72 E-value=82 Score=28.18 Aligned_cols=61 Identities=15% Similarity=0.032 Sum_probs=34.4
Q ss_pred HHHhhhcCCccEEEEEeeeeeCCchhH--HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 126 AQQLGKSGKYTAVLCIGAVVRGDTTHY--DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 126 ak~L~~~~~yDaVIaLG~VIrGeT~H~--e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
++++++..++|||+++|.- ||-... |--. ++.+...+. .+..+||+.||-. .+.+++++++
T Consensus 30 i~~l~~~~Gv~gi~v~Gst--GE~~~Ls~eEr~-~~~~~~~~~-~~~~~~viagvg~-~~t~~ai~~a 92 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGST--GEAFLLSTEEKK-QVLEIVAEE-AKGKVKLIAQVGS-VNTAEAQELA 92 (293)
T ss_pred HHHHHhcCCCCEEEECCCc--cccccCCHHHHH-HHHHHHHHH-hCCCCCEEecCCC-CCHHHHHHHH
Confidence 3444432789999999975 664433 1111 112222221 2347999999966 5666666654
No 390
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=38.62 E-value=47 Score=30.32 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=36.9
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCC--cchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPG--SFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPG--A~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.|+.||..+. +.+..++...+.|++.++ .++. ++. .+|.=-.+...++..++|.||++| |++..+
T Consensus 24 ~~~livt~~~---~~~~~~~~v~~~l~~~~~-----~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiG----GGs~iD 91 (337)
T cd08177 24 SRALVLTTPS---LATKLAERVASALGDRVA-----GTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIG----GGSTID 91 (337)
T ss_pred CeEEEEcChH---HHHHHHHHHHHHhccCCc-----EEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeC----CcHHHH
Confidence 5888887653 333366667777776532 2332 111 233222222334567899999999 666665
No 391
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=38.60 E-value=1e+02 Score=27.36 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=45.7
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
...||+|+...+ ...+.+.+...+.|++.|+. .+...++ +|.-++--.++++. ..+.|+|+..+.
T Consensus 137 ~~~~v~il~~d~--~~g~~~~~~~~~~l~~~G~~--vv~~~~~~~~~~D~s~~i~~i~-~~~~d~v~~~~~ 202 (347)
T cd06336 137 GGKKVALLGPND--AYGQPWVAAYKAAWEAAGGK--VVSEEPYDPGTTDFSPIVTKLL-AEKPDVIFLGGP 202 (347)
T ss_pred CCceEEEEccCC--chhHHHHHHHHHHHHHcCCE--EeeecccCCCCcchHHHHHHHH-hcCCCEEEEcCC
Confidence 456999998754 36778899999999999975 2333344 45666666677774 466898876655
No 392
>TIGR00623 sula cell division inhibitor SulA. All proteins in this family for which the functions are known are cell division inhibitors. In E. coli, SulA is one of the SOS regulated genes.
Probab=38.60 E-value=68 Score=27.62 Aligned_cols=59 Identities=7% Similarity=-0.016 Sum_probs=44.5
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEE
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaL 141 (218)
.+..+..|.--+.- ....|...|++.+.+-.+.-+-..+-=+++.+.++++.|.+|++=
T Consensus 59 ~~Rwlv~IaPP~~~---------~~~~L~~~Gl~l~rvlli~~~~~~d~lwa~EQaLrSG~c~aVL~W 117 (168)
T TIGR00623 59 QSRWQLWLTPQQKL---------SKEWVQSSGLPLTKVMQISQLSPCNTVESMIRALRTGNYSVVIGW 117 (168)
T ss_pred cCceEEEECCCCcc---------CHHHHHHcCCChhHEEEEecCCchhHHHHHHHHHHhCCCcEEEec
Confidence 44567777766542 245688899998888777766667767899999999999999873
No 393
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=38.59 E-value=1.6e+02 Score=29.07 Aligned_cols=61 Identities=18% Similarity=0.343 Sum_probs=37.7
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc-----chHH-HHHHHhhhcC--CccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS-----FEIG-VVAQQLGKSG--KYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA-----~ELP-~aak~L~~~~--~yDaVIaLG~ 143 (218)
.|+.||++..- ....+...+.|++.|+. +....+|+. .+.- -+++.+.+.+ +.|.||++|=
T Consensus 210 ~k~~iV~d~~v----~~~~~~l~~~L~~~g~~---v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGG 278 (542)
T PRK14021 210 VKVALIHTQPV----QRHSDRARTLLRQGGYE---VSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGG 278 (542)
T ss_pred CeEEEEECccH----HHHHHHHHHHHHhCCCc---eEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcC
Confidence 57777776422 13567778888888873 434445654 3322 2335555544 7999999993
No 394
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=38.59 E-value=1.6e+02 Score=25.94 Aligned_cols=65 Identities=12% Similarity=0.070 Sum_probs=46.2
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
...||+++.. +......+.+...+.+++.|+. .+...+ .++.-+.--.+.++. ..+.|+|++.+.
T Consensus 143 ~~~~va~l~~--~~~~g~~~~~~~~~~~~~~G~~--vv~~~~~~~~~~d~~~~v~~l~-~~~~d~v~~~~~ 208 (344)
T cd06345 143 GFKTAAIVAE--DAAWGKGIDAGIKALLPEAGLE--VVSVERFSPDTTDFTPILQQIK-AADPDVIIAGFS 208 (344)
T ss_pred CCceEEEEec--CchhhhHHHHHHHHHHHHcCCe--EEEEEecCCCCCchHHHHHHHH-hcCCCEEEEeec
Confidence 3568999876 4567778889999999999974 333333 455667666777774 456899988664
No 395
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=38.57 E-value=71 Score=27.93 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhchhcC--CceEEEEcCCCCHHHHHHh
Q 027801 153 DAVANSAASGVLSAGVNSG--VPCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~--vPVifGVLT~~n~eQA~~R 190 (218)
-|+||.+....++..-+.+ ++.+|-=+- ...+|+.++
T Consensus 139 ~ylCN~iyY~sL~~~~~~~~~~~~~FvHVP-~~~~~~~~~ 177 (208)
T PRK13194 139 TYLCNYVMYLTLHHSATKGYPKMAGFIHVP-YTPDQVIEK 177 (208)
T ss_pred cchhHHHHHHHHHHHHhcCCCceeEEEEcC-CcHHHhhhh
Confidence 6899999998888765433 556665444 566777765
No 396
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=38.54 E-value=95 Score=28.30 Aligned_cols=93 Identities=20% Similarity=0.296 Sum_probs=60.1
Q ss_pred HHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceE
Q 027801 97 ALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
--+.|.++|++ -..+..||.-.+ |=.+++.+.+ ++|-||+=|=+ |. .|+|+=++++++.+ |+|..
T Consensus 26 la~~L~~~G~~--v~~~~~VgD~~~~I~~~l~~a~~--r~D~vI~tGGL--GP-T~DDiT~e~vAka~-------g~~lv 91 (255)
T COG1058 26 LADELTELGVD--LARITTVGDNPDRIVEALREASE--RADVVITTGGL--GP-THDDLTAEAVAKAL-------GRPLV 91 (255)
T ss_pred HHHHHHhcCce--EEEEEecCCCHHHHHHHHHHHHh--CCCEEEECCCc--CC-CccHhHHHHHHHHh-------CCCcc
Confidence 35788899996 455666787766 5566666643 39999999999 54 58999999998876 33432
Q ss_pred EEEcCCCCHHHHHHhhCCCCCCcHHHHHHHHHHHH
Q 027801 176 FGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMA 210 (218)
Q Consensus 176 fGVLT~~n~eQA~~Rag~k~gnKG~EAA~aAleM~ 210 (218)
. + ++|++....+...+|.+...+=.+|+
T Consensus 92 ~------~-~~al~~i~~~~~~r~~~~~~~~~K~A 119 (255)
T COG1058 92 L------D-EEALAMIEEKYAKRGREMTEANRKQA 119 (255)
T ss_pred c------C-HHHHHHHHHHHHhcCCCCChhhhhhc
Confidence 1 1 55655554444445544444444443
No 397
>PRK03670 competence damage-inducible protein A; Provisional
Probab=38.28 E-value=66 Score=28.88 Aligned_cols=62 Identities=16% Similarity=0.075 Sum_probs=42.6
Q ss_pred HHHHHHHHCCCCCCCeEEEEeCCcchH-HHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHH
Q 027801 96 GALETFKKYSVKEENIDVVWVPGSFEI-GVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGV 163 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~vv~VPGA~EL-P~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gL 163 (218)
...+.|.+.|+. -..+..||.-.+. =-+++.+. ...+|.||+.|-+ ...|+|+..+++++.+
T Consensus 24 ~la~~L~~~G~~--v~~~~iV~Dd~~~I~~~l~~a~-~~~~DlVIttGGl---Gpt~dD~T~eava~a~ 86 (252)
T PRK03670 24 FIAQKLTEKGYW--VRRITTVGDDVEEIKSVVLEIL-SRKPEVLVISGGL---GPTHDDVTMLAVAEAL 86 (252)
T ss_pred HHHHHHHHCCCE--EEEEEEcCCCHHHHHHHHHHHh-hCCCCEEEECCCc---cCCCCCchHHHHHHHh
Confidence 345568888985 3456668877763 33334432 3469999999998 4567888888888774
No 398
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=38.26 E-value=33 Score=25.10 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 89 VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 89 It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
+...|++.|.+...+.+. +++. .+--+-++|. ..+.||.|++.|++
T Consensus 32 ~s~~~l~~~~~~~~~~~~---~~~~-~~~D~~~l~~------~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 32 ISPEMLELAKKRFSEDGP---KVRF-VQADARDLPF------SDGKFDLVVCSGLS 77 (101)
T ss_dssp S-HHHHHHHHHHSHHTTT---TSEE-EESCTTCHHH------HSSSEEEEEE-TTG
T ss_pred CCHHHHHHHHHhchhcCC---ceEE-EECCHhHCcc------cCCCeeEEEEcCCc
Confidence 455788888888888776 3444 4666666763 45699999997775
No 399
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=38.25 E-value=3.5e+02 Score=25.49 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=51.9
Q ss_pred HHHHHHHCCCCCCCeEEEEeCCc-chHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceE
Q 027801 97 ALETFKKYSVKEENIDVVWVPGS-FEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA-~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
..+.|.+.|+++..+.++ ||. -| +.+.|.++.++|.|+-- |.+..-..|+..++..+..+.++.+=.--
T Consensus 163 l~~~l~~aglP~g~v~~v--~g~~~~---~~~~L~~~~~i~~V~ft-----Gs~~~g~~v~~~aa~~~~~~~lelgG~~~ 232 (455)
T cd07093 163 LAELANEAGLPPGVVNVV--HGFGPE---AGAALVAHPDVDLISFT-----GETATGRTIMRAAAPNLKPVSLELGGKNP 232 (455)
T ss_pred HHHHHHhcCCCccceEEE--ecCchH---HHHHHhcCCCccEEEEE-----CCHHHHHHHHHHHhhcccceEeecCCCCc
Confidence 345667778876555554 442 23 34666666778888754 56777788888877766666665443322
Q ss_pred EEEcCCCCHHHHHHh
Q 027801 176 FGVLTCDNMDQALNR 190 (218)
Q Consensus 176 fGVLT~~n~eQA~~R 190 (218)
.-|+-..|.+.|.++
T Consensus 233 ~iV~~dAdl~~a~~~ 247 (455)
T cd07093 233 NIVFADADLDRAVDA 247 (455)
T ss_pred eEECCCCCHHHHHHH
Confidence 334444577877654
No 400
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=38.20 E-value=2.2e+02 Score=24.43 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=43.6
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc-hHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHH
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF-EIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAV 155 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~-ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~V 155 (218)
||.++.. ++..+..+ .+.|.+.|+. +..+|..- ++|-. +.+ ...|||+|..|-- | .++.+
T Consensus 2 ~ilv~d~--~~~~~~~~----~~~l~~~G~~-----~~~~~~~~~~~~~~-~~~--~~~~dgliisGGp--~-~~~~~-- 62 (214)
T PRK07765 2 RILVVDN--YDSFVFNL----VQYLGQLGVE-----AEVWRNDDPRLADE-AAV--AAQFDGVLLSPGP--G-TPERA-- 62 (214)
T ss_pred eEEEEEC--CCcHHHHH----HHHHHHcCCc-----EEEEECCCcCHHHH-HHh--hcCCCEEEECCCC--C-Chhhc--
Confidence 5655543 33444433 3556777874 33334432 23322 222 2469999999864 3 33322
Q ss_pred HHHHHHHHHHhchhcCCceEEEE
Q 027801 156 ANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 156 a~~vs~gLm~lsL~~~vPVifGV 178 (218)
.....+++-.++.++|| +||
T Consensus 63 --~~~~~~i~~~~~~~~Pi-LGI 82 (214)
T PRK07765 63 --GASIDMVRACAAAGTPL-LGV 82 (214)
T ss_pred --chHHHHHHHHHhCCCCE-EEE
Confidence 23446777778889994 555
No 401
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=38.10 E-value=2.2e+02 Score=25.18 Aligned_cols=81 Identities=17% Similarity=0.138 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHH-----CCCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHH
Q 027801 87 ELVTKLLLEGALETFKK-----YSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANS 158 (218)
Q Consensus 87 ~~It~~Ll~gA~~~L~~-----~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~ 158 (218)
......+.+++.-.+++ -|+.-..|+++..--..+-.- ++++|++.++.++|| |.. +..
T Consensus 13 a~~G~~~~~g~~lav~~inn~~ggi~G~~i~lv~~D~~~~p~~a~~~~~~li~~~~V~avv--G~~-----------~S~ 79 (333)
T cd06328 13 AAYGKQTLTGFMLGLEYATGGTMQVDGRPIEVIVKDDAGNPEVAVSLARELIGDDGVDILV--GST-----------SSG 79 (333)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCcCCEEEEEEEecCCCChHHHHHHHHHHHHhcCCeEEE--ccC-----------CcH
Confidence 34445555665533332 134444577776555554333 566777777787777 442 344
Q ss_pred HHHHHHHhchhcCCceEEEEcC
Q 027801 159 AASGVLSAGVNSGVPCIFGVLT 180 (218)
Q Consensus 159 vs~gLm~lsL~~~vPVifGVLT 180 (218)
++..++.+.-+.++|.+.+.-+
T Consensus 80 ~~~a~~~~~~~~~ip~i~~~~~ 101 (333)
T cd06328 80 VALAVLPVAEENKKILIVEPAA 101 (333)
T ss_pred HHHHHHHHHHHhCCcEEecCCC
Confidence 5556666667788888876533
No 402
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=37.67 E-value=1.6e+02 Score=25.78 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=42.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC-CcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-GSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP-GA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..||+|+.. +....+.+.+...+.+++.|.. -+...++| +.-++=-.++++. ..+.|+|+..|.
T Consensus 132 ~~~v~il~~--d~~~g~~~~~~~~~~~~~~G~~--vv~~~~~~~~~~d~~~~v~~~~-~~~~d~v~~~~~ 196 (333)
T cd06331 132 GKRFYLIGS--DYVWPRESNRIARALLEELGGE--VVGEEYLPLGTSDFGSVIEKIK-AAGPDVVLSTLV 196 (333)
T ss_pred CCeEEEECC--CchhHHHHHHHHHHHHHHcCCE--EEEEEEecCCcccHHHHHHHHH-HcCCCEEEEecC
Confidence 468999954 4456677888888999999974 23333444 6666544445553 457898887654
No 403
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=37.62 E-value=51 Score=30.70 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=39.6
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc-----hHHHHHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF-----EIGVVAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~-----ELP~aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
.|+.||..+.-.... .+++...+.|++.|+. +.+ .+|.- |.=..+-.+++..++|.||++| |++.
T Consensus 27 kr~livtd~~~~~~~-g~~~~v~~~L~~~gi~---~~~--f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiG----GGS~ 96 (383)
T cd08186 27 SKVLLVTGKSAYKKS-GAWDKVEPALDEHGIE---YVL--YNKVTPNPTVDQVDEAAKLGREFGAQAVIAIG----GGSP 96 (383)
T ss_pred CEEEEEcCccHHhhc-ChHHHHHHHHHHcCCe---EEE--eCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC----CccH
Confidence 588888876533211 4456667778887763 333 33332 2222223334667899999999 6665
Q ss_pred hH
Q 027801 151 HY 152 (218)
Q Consensus 151 H~ 152 (218)
.+
T Consensus 97 iD 98 (383)
T cd08186 97 ID 98 (383)
T ss_pred HH
Confidence 55
No 404
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=37.62 E-value=42 Score=27.50 Aligned_cols=20 Identities=25% Similarity=-0.087 Sum_probs=9.1
Q ss_pred eEEEEeCCcc-hHHHHHHHhh
Q 027801 111 IDVVWVPGSF-EIGVVAQQLG 130 (218)
Q Consensus 111 I~vv~VPGA~-ELP~aak~L~ 130 (218)
.-++-.|-=+ -+|-.+|.++
T Consensus 68 ~iI~~sP~Y~~sip~~LK~~i 88 (171)
T TIGR03567 68 GVVVATPVYKASYSGVLKALL 88 (171)
T ss_pred EEEEECCcccCCCCHHHHHHH
Confidence 3344444322 2555555554
No 405
>PRK13411 molecular chaperone DnaK; Provisional
Probab=37.56 E-value=16 Score=36.83 Aligned_cols=58 Identities=26% Similarity=0.371 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCeE-EEEeCCcchHHHHHHHhhhc---------CCccEEEEEeeeeeCC
Q 027801 91 KLLLEGALETFKKYSVKEENID-VVWVPGSFEIGVVAQQLGKS---------GKYTAVLCIGAVVRGD 148 (218)
Q Consensus 91 ~~Ll~gA~~~L~~~Gv~~e~I~-vv~VPGA~ELP~aak~L~~~---------~~yDaVIaLG~VIrGe 148 (218)
++..+-+.+.|++.|+..++|+ ++-|-|+--+|++-+.+.+. -+.|-.||+||-|.|.
T Consensus 308 ~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa 375 (653)
T PRK13411 308 EATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAG 375 (653)
T ss_pred HHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHH
Confidence 3334445567788888766665 78899999999997776421 2456777777776653
No 406
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=37.46 E-value=1.3e+02 Score=26.65 Aligned_cols=63 Identities=11% Similarity=0.039 Sum_probs=45.7
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEE
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaL 141 (218)
..||+++.. +....+.+.+...+.+++.|++.- .+...-||.-+..-.++++.. .+.|+|+..
T Consensus 136 ~~~v~~i~~--~~~~g~~~~~~~~~~~~~~G~~vv-~~~~~~~~~~d~~~~v~~l~~-~~pd~V~~~ 198 (333)
T cd06328 136 GKKIATLAQ--DYAFGRDGVAAFKAALEKLGAAIV-TEEYAPTDTTDFTPYAQRLLD-ALKKVLFVI 198 (333)
T ss_pred CCeEEEEec--CccccHHHHHHHHHHHHhCCCEEe-eeeeCCCCCcchHHHHHHHHh-cCCCEEEEE
Confidence 468999965 446677788888999999998531 223335788888888888854 468998765
No 407
>PLN02204 diacylglycerol kinase
Probab=37.34 E-value=1.8e+02 Score=29.87 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=47.5
Q ss_pred CCCCEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhh--hcCCccEEEEEeeeeeCCc
Q 027801 73 NEGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLG--KSGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 73 ~~~~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~--~~~~yDaVIaLG~VIrGeT 149 (218)
....|+.|++-.+- +.-..+..+.....|++.|++ ++++.--.+-+.--.++.+. ....||+|||.| |+=
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~---~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVG----GDG 229 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVK---TKVIVTERAGHAFDVMASISNKELKSYDGVIAVG----GDG 229 (601)
T ss_pred CCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCe---EEEEEecCcchHHHHHHHHhhhhccCCCEEEEEc----Ccc
Confidence 34567888765442 233445667788889999985 55554444434333344432 246799999987 333
Q ss_pred hhHHHHHHHHHHHHH
Q 027801 150 THYDAVANSAASGVL 164 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm 164 (218)
. -+++..||+
T Consensus 230 t-----~nEVlNGL~ 239 (601)
T PLN02204 230 F-----FNEILNGYL 239 (601)
T ss_pred H-----HHHHHHHHh
Confidence 2 244556675
No 408
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=37.24 E-value=42 Score=27.77 Aligned_cols=70 Identities=10% Similarity=0.156 Sum_probs=46.4
Q ss_pred HHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE-------------------EeeeeeCCchhHHHHH
Q 027801 96 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC-------------------IGAVVRGDTTHYDAVA 156 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa-------------------LG~VIrGeT~H~e~Va 156 (218)
...+.|+++|++ .++-|||...+|+.-. + +. ..+-|++ .|++..+.- +.
T Consensus 3 ~~v~~L~~~Gv~----~vfGvPg~~~~~l~da-l-~~-~i~~i~~~~ee~aa~~aAg~~~~~~~~~v~~~~sG-----~g 70 (157)
T TIGR03845 3 AVYNILKDAGID----LVASVPCDNLKNLLPL-I-EK-DFRHIPLTREEEGVGICAGAYLAGKKPAILMQSSG-----LG 70 (157)
T ss_pred HHHHHHHHCCCe----EEEecCcHhHHHHHHH-H-Hh-CCcEEecCChHHHHHHHHHHHHhcCCcEEEEeCCc-----HH
Confidence 456889999996 7999999999998744 3 21 2444411 222222211 23
Q ss_pred HHHHHHHHHhchhcCCceEEEE
Q 027801 157 NSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 157 ~~vs~gLm~lsL~~~vPVifGV 178 (218)
....+|.++...+++||++=+
T Consensus 71 -n~~~~l~~a~~~~~~Pvl~i~ 91 (157)
T TIGR03845 71 -NSINALASLNKTYGIPLPILA 91 (157)
T ss_pred -HHHHHHHHHHHcCCCCEEEEE
Confidence 577888888877899998766
No 409
>PLN02278 succinic semialdehyde dehydrogenase
Probab=37.20 E-value=2.8e+02 Score=26.94 Aligned_cols=93 Identities=23% Similarity=0.184 Sum_probs=60.1
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
.+.|.+.|+++..+.++ ||.-+ -+.+.|+.+.++|.|.-- |.+.-...|+..+...+..+.++.+=---.-
T Consensus 207 ~~~l~eaglP~gvv~~v--~g~~~--~~~~~L~~~~~v~~V~fT-----GS~~~G~~i~~~aa~~~~~~~lElGGk~~~i 277 (498)
T PLN02278 207 AELALQAGIPPGVLNVV--MGDAP--EIGDALLASPKVRKITFT-----GSTAVGKKLMAGAAATVKRVSLELGGNAPFI 277 (498)
T ss_pred HHHHHHcCCCcccEEEE--ecCCh--hhHHHHhcCCCcCEEEEE-----CcHHHHHHHHHHHhhcCCcEEEecCCCCeeE
Confidence 46677888876555554 55322 244777778889998755 5677788888888877777777764222223
Q ss_pred EcCCCCHHHHHHhhC-CCCCCcH
Q 027801 178 VLTCDNMDQALNRAG-GKSGNKG 199 (218)
Q Consensus 178 VLT~~n~eQA~~Rag-~k~gnKG 199 (218)
|+-..|.++|.+++- ++..|-|
T Consensus 278 V~~dAdl~~aa~~i~~~~f~~~G 300 (498)
T PLN02278 278 VFDDADLDVAVKGALASKFRNSG 300 (498)
T ss_pred ECCCCCHHHHHHHHHHHHhccCC
Confidence 555568888876642 3344444
No 410
>PRK09065 glutamine amidotransferase; Provisional
Probab=37.17 E-value=1.2e+02 Score=26.50 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=49.9
Q ss_pred EEEEEEcccC-HHHHHHH---HHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 77 RFALVVARFN-ELVTKLL---LEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 77 RIaIV~Srfn-~~It~~L---l~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
||+|+.++=- +.+-++- .+-....|.+.|. +++++.|.---++|- -..|||||..|-- .+...
T Consensus 3 ~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~-------~~~~dgvvi~Gg~---~~~~d 69 (237)
T PRK09065 3 PLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQ---PVVVVRVFAGEPLPA-------PDDFAGVIITGSW---AMVTD 69 (237)
T ss_pred cEEEEECCCCChhHHhhcCCHHHHHHHHhccCCc---eEEEEeccCCCCCCC-------hhhcCEEEEeCCC---cccCC
Confidence 4777765543 2222211 1122223444454 477777764334442 1469999999863 11122
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhC
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG 192 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag 192 (218)
++-.-.-...+++-.++.++|| +||=- =-|.+.++-
T Consensus 70 ~~~w~~~~~~~i~~~~~~~~Pv-lGIC~---G~Qlla~al 105 (237)
T PRK09065 70 RLDWSERTADWLRQAAAAGMPL-LGICY---GHQLLAHAL 105 (237)
T ss_pred CchhHHHHHHHHHHHHHCCCCE-EEECh---hHHHHHHHc
Confidence 2222222355666667789994 56533 145566653
No 411
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=37.09 E-value=84 Score=27.51 Aligned_cols=37 Identities=11% Similarity=-0.067 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHh
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~R 190 (218)
-|+||.+....++..-+.++|.+|-=+-. -.+|+.++
T Consensus 139 ~yvCN~vyY~sl~~~~~~~~~a~FIHVP~-~~~~~~~~ 175 (209)
T PRK13193 139 SYLCNNAMYIIIREARKYNSLGGFIHVPL-HESYAARI 175 (209)
T ss_pred cchhHHHHHHHHHHHhccCCeeEEEEeCC-chhhhhhc
Confidence 69999999998886555567777766553 44666553
No 412
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=36.98 E-value=54 Score=27.10 Aligned_cols=88 Identities=18% Similarity=0.131 Sum_probs=49.8
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
..+.|||+|..+..-. . + ...+.+- |+ ++..+.+-..-|+.-.++++.. .++|.||.=|.+
T Consensus 75 ~~~~~Iavv~~~~~~~---~-~-~~~~~ll--~~---~i~~~~~~~~~e~~~~i~~~~~-~G~~viVGg~~~-------- 135 (176)
T PF06506_consen 75 KYGPKIAVVGYPNIIP---G-L-ESIEELL--GV---DIKIYPYDSEEEIEAAIKQAKA-EGVDVIVGGGVV-------- 135 (176)
T ss_dssp CCTSEEEEEEESS-SC---C-H-HHHHHHH--T----EEEEEEESSHHHHHHHHHHHHH-TT--EEEESHHH--------
T ss_pred hcCCcEEEEecccccH---H-H-HHHHHHh--CC---ceEEEEECCHHHHHHHHHHHHH-cCCcEEECCHHH--------
Confidence 4567999997654321 1 1 2222222 55 5889999999999999999864 459988753322
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHh
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~R 190 (218)
.++.-++|+|.++---+.++..+|++.
T Consensus 136 -----------~~~A~~~gl~~v~i~sg~esi~~Al~e 162 (176)
T PF06506_consen 136 -----------CRLARKLGLPGVLIESGEESIRRALEE 162 (176)
T ss_dssp -----------HHHHHHTTSEEEESS--HHHHHHHHHH
T ss_pred -----------HHHHHHcCCcEEEEEecHHHHHHHHHH
Confidence 234456898964432222344444433
No 413
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=36.79 E-value=1.1e+02 Score=28.47 Aligned_cols=86 Identities=13% Similarity=0.119 Sum_probs=56.3
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDA 154 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~ 154 (218)
..+||||++.=-..-...+++.-.+.|+++|.+ ..++.|--... .+|+.-..+|+.|-+||- |...+.
T Consensus 232 A~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk---~y~i~~~~in~-----~kL~nf~eiD~fV~~aCP-r~sidd--- 299 (332)
T TIGR00322 232 GKKFGVVLSSKGGQGRLRLAKNLKKNLEEAGKT---VLIILLSNVSP-----AKLLMFDQIDVFVQVACP-RIAIDD--- 299 (332)
T ss_pred CCEEEEEEecCccCCCHHHHHHHHHHHHHcCCc---EEEEEeCCCCH-----HHHhCCCCcCEEEEecCC-Cceecc---
Confidence 347999997654444445666667788888975 45554544332 556666679999999997 433332
Q ss_pred HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH
Q 027801 155 VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 155 Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~ 188 (218)
+-++.+| |||+-..+=|+
T Consensus 300 ------------~~~f~kP----vlTP~E~e~al 317 (332)
T TIGR00322 300 ------------GYLFNKP----LLTPYEFELLL 317 (332)
T ss_pred ------------hhhcCCc----cccHHHHHHHh
Confidence 4467788 56665555554
No 414
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=36.62 E-value=45 Score=28.68 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhchhcC--CceEEEEcCCCCHHHHHHh
Q 027801 153 DAVANSAASGVLSAGVNSG--VPCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~--vPVifGVLT~~n~eQA~~R 190 (218)
-|+||.+....+...-+.+ +|.+|-=+- ...||+.++
T Consensus 139 ~YlCN~~~Y~sl~~~~~~~~~~~~~FvHvP-~~~~~~~~~ 177 (202)
T PF01470_consen 139 RYLCNYIYYRSLHHAERRGPPIPAGFVHVP-PLPEQVAEK 177 (202)
T ss_dssp SSHHHHHHHHHHHHHHHHSTTSEEEEEEE--B-GGGHTTC
T ss_pred hhHHHHHHHHHHHHHhhcCCCCceeEEeeC-CchHhhccC
Confidence 6889999888888876655 445544333 445565543
No 415
>PRK01215 competence damage-inducible protein A; Provisional
Probab=36.51 E-value=1.6e+02 Score=26.48 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=43.1
Q ss_pred HHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHH
Q 027801 97 ALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVL 164 (218)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm 164 (218)
..+.|.+.|+. -.....||.-.| |--+++.+. .++|-||+-|-+ ...|+|+.-+++.+.+.
T Consensus 28 l~~~L~~~G~~--v~~~~~v~Dd~~~I~~~l~~a~--~~~DlVIttGG~---g~t~dD~t~eaia~~~g 89 (264)
T PRK01215 28 IARRLTYLGYT--VRRITVVMDDIEEIVSAFREAI--DRADVVVSTGGL---GPTYDDKTNEGFAKALG 89 (264)
T ss_pred HHHHHHHCCCe--EEEEEEeCCCHHHHHHHHHHHh--cCCCEEEEeCCC---cCChhhhHHHHHHHHhC
Confidence 34568888985 345667888877 444555554 367999999998 46678888888877643
No 416
>PLN02470 acetolactate synthase
Probab=36.42 E-value=57 Score=32.06 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=30.6
Q ss_pred cccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHH
Q 027801 83 ARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV 125 (218)
Q Consensus 83 Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~a 125 (218)
|+|+....-...+...+.|++.|++ .++-+||...+|+.
T Consensus 5 ~~~~~~~~~~~a~~l~~~L~~~GV~----~vFg~pG~~~~~l~ 43 (585)
T PLN02470 5 SRFAPDEPRKGADILVEALEREGVD----TVFAYPGGASMEIH 43 (585)
T ss_pred cCCCCCccccHHHHHHHHHHHcCCC----EEEEcCCcccHHHH
Confidence 5666544444467778999999997 79999999999985
No 417
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=36.24 E-value=1.5e+02 Score=28.06 Aligned_cols=84 Identities=20% Similarity=0.234 Sum_probs=56.5
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
.+.|.+.|+++..+.++ +|.-+ +.+.|..+.++|.|.-- |.+.....|.+.+...+..+.++.+=.--.-
T Consensus 163 ~~~~~~aGlP~g~~~~v--~g~~~---~~~~l~~~~~v~~v~fT-----Gs~~~g~~i~~~aa~~~~~~~lelgG~~p~i 232 (457)
T cd07090 163 AEILTEAGLPDGVFNVV--QGGGE---TGQLLCEHPDVAKVSFT-----GSVPTGKKVMSAAAKGIKHVTLELGGKSPLI 232 (457)
T ss_pred HHHHHHcCCCcccEEEE--eCChh---hHHHHhcCCCCCEEEEE-----CcHHHHHHHHHHHhccCCceEEecCCCCceE
Confidence 45556778876555554 56322 45667777778887654 5677778888888877777777765555455
Q ss_pred EcCCCCHHHHHHhh
Q 027801 178 VLTCDNMDQALNRA 191 (218)
Q Consensus 178 VLT~~n~eQA~~Ra 191 (218)
|.-..|.+.|.+++
T Consensus 233 V~~dAdl~~Aa~~i 246 (457)
T cd07090 233 IFDDADLENAVNGA 246 (457)
T ss_pred ECCCCCHHHHHHHH
Confidence 56667888887664
No 418
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=36.22 E-value=2.9e+02 Score=26.23 Aligned_cols=85 Identities=21% Similarity=0.213 Sum_probs=56.0
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
.+.|.+.|+++..+.++ ||.- +-+.+.|.++.++|.|.-- |.+.....|.+.+..-+..+.++.+=.--.-
T Consensus 177 ~~~~~~aGlP~g~v~~v--~g~~--~~~~~~l~~~~~v~~v~fT-----Gs~~~g~~i~~~aa~~~~~v~lElgG~~p~i 247 (466)
T cd07138 177 AEILDEAGLPAGVFNLV--NGDG--PVVGEALSAHPDVDMVSFT-----GSTRAGKRVAEAAADTVKRVALELGGKSANI 247 (466)
T ss_pred HHHHHHcCCCCCcEEEE--eCCc--hhHHHHHhcCCCCCEEEEE-----CcHHHHHHHHHHHhccCCeEEEECCCCCeeE
Confidence 56778889887666655 4531 1144667777889988654 5677778888888877777777766333333
Q ss_pred EcCCCCHHHHHHhh
Q 027801 178 VLTCDNMDQALNRA 191 (218)
Q Consensus 178 VLT~~n~eQA~~Ra 191 (218)
|.-..|.++|.+++
T Consensus 248 V~~dADl~~aa~~i 261 (466)
T cd07138 248 ILDDADLEKAVPRG 261 (466)
T ss_pred ECCCCCHHHHHHHH
Confidence 44445788876654
No 419
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=36.15 E-value=53 Score=30.30 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=38.7
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHHH--HHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVV--AQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~a--ak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.|+.||..+.-..- ..+++...+.|++.|+. +.++. |..--.+-.+ +-.+++..++|.||++| |.+..+
T Consensus 26 ~r~lvVt~~~~~~~-~g~~~~v~~~L~~~g~~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG----GGSviD 97 (357)
T cd08181 26 KRALIVTGKSSAKK-NGSLDDVTKALEELGIE---YEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIG----GGSPLD 97 (357)
T ss_pred CEEEEEeCCchHhh-cCcHHHHHHHHHHcCCe---EEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeC----CchHHH
Confidence 68889987643221 13445667778888873 34331 2221122221 22234667899999999 555554
No 420
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=36.09 E-value=1.8e+02 Score=25.85 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=44.9
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC-CcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-GSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP-GA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..|+++|.. +......+.+...+.+++.|.. .+...++| +.-+.--.++++ +..+.|+|+..+.
T Consensus 144 ~~~v~~l~~--~~~~g~~~~~~~~~~~~~~G~~--vv~~~~~~~~~~d~~~~i~~l-~~~~~d~v~~~~~ 208 (347)
T cd06340 144 LKTVALVHE--DTEFGTSVAEAIKKFAKERGFE--IVEDISYPANARDLTSEVLKL-KAANPDAILPASY 208 (347)
T ss_pred CceEEEEec--CchHhHHHHHHHHHHHHHcCCE--EEEeeccCCCCcchHHHHHHH-HhcCCCEEEEccc
Confidence 368999986 4456677888888899999975 23333444 666777777777 4567898876554
No 421
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=36.03 E-value=1.3e+02 Score=26.88 Aligned_cols=69 Identities=19% Similarity=0.134 Sum_probs=39.7
Q ss_pred CcchHHHHH---HHhhhcC-CccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 118 GSFEIGVVA---QQLGKSG-KYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 118 GA~ELP~aa---k~L~~~~-~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
|..+.+... +.+. .. ++||++++|.- ||-..... =-.++.+...+. ....+||+.||-. .+.+++++++
T Consensus 16 g~iD~~~~~~~i~~l~-~~~Gv~gi~~~Gst--GE~~~Lt~~Er~~~~~~~~~~-~~~~~~viagv~~-~~~~~ai~~a 89 (288)
T cd00954 16 GEINEDVLRAIVDYLI-EKQGVDGLYVNGST--GEGFLLSVEERKQIAEIVAEA-AKGKVTLIAHVGS-LNLKESQELA 89 (288)
T ss_pred CCCCHHHHHHHHHHHH-hcCCCCEEEECcCC--cCcccCCHHHHHHHHHHHHHH-hCCCCeEEeccCC-CCHHHHHHHH
Confidence 555555443 3333 35 89999999986 77655420 011122222222 1247899999987 5556666654
No 422
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=36.02 E-value=3.6e+02 Score=25.23 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCC-c--hh-----------
Q 027801 86 NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGD-T--TH----------- 151 (218)
Q Consensus 86 n~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGe-T--~H----------- 151 (218)
+.+..+.|++.+.+..+ ++ +-+---|-.=+|=-+++.+ ...+.|||++.=.++.|. . ..
T Consensus 145 ~~e~l~~l~~~vk~~~~---~P---v~vKl~P~~~di~~iA~~~-~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GG 217 (310)
T COG0167 145 DPELLEKLLEAVKAATK---VP---VFVKLAPNITDIDEIAKAA-EEAGADGLIAINTTKSGMKIDLETKKPVLANETGG 217 (310)
T ss_pred CHHHHHHHHHHHHhccc---Cc---eEEEeCCCHHHHHHHHHHH-HHcCCcEEEEEeeccccccccccccccccCcCCCC
Confidence 56677777777666644 32 4555566333465666655 567899999999887444 1 11
Q ss_pred --HHHHHHHHHHHHHHhchhcC--CceEEEEcCCCCHHHHHHhh
Q 027801 152 --YDAVANSAASGVLSAGVNSG--VPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 152 --~e~Va~~vs~gLm~lsL~~~--vPVifGVLT~~n~eQA~~Ra 191 (218)
-..+-.-..+-+-++.-+.+ +||| |+=...+.++|+|+.
T Consensus 218 LSG~~ikp~al~~v~~l~~~~~~~ipII-GvGGI~s~~DA~E~i 260 (310)
T COG0167 218 LSGPPLKPIALRVVAELYKRLGGDIPII-GVGGIETGEDALEFI 260 (310)
T ss_pred cCcccchHHHHHHHHHHHHhcCCCCcEE-EecCcCcHHHHHHHH
Confidence 13456667778888887766 9986 777778999998874
No 423
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=35.94 E-value=47 Score=29.47 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 89 VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 89 It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
+...|.+.|.+.|+..|+. |+.+..=-|+.-.| +...||.|++=+++
T Consensus 102 r~~~L~~~A~~~L~~lg~~--nV~v~~gDG~~G~~-------~~aPyD~I~Vtaaa 148 (209)
T COG2518 102 RIEELAEQARRNLETLGYE--NVTVRHGDGSKGWP-------EEAPYDRIIVTAAA 148 (209)
T ss_pred EcHHHHHHHHHHHHHcCCC--ceEEEECCcccCCC-------CCCCcCEEEEeecc
Confidence 3456788999999999994 68888877776544 45789999998887
No 424
>COG0594 RnpA RNase P protein component [Translation, ribosomal structure and biogenesis]
Probab=35.65 E-value=1.1e+02 Score=24.25 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=37.3
Q ss_pred CCCCEEEEEEcc-cCH-----HHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHH
Q 027801 73 NEGLRFALVVAR-FNE-----LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV 125 (218)
Q Consensus 73 ~~~~RIaIV~Sr-fn~-----~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~a 125 (218)
....||||++|. ... .-+.+++..+..... +.....|+.++-=||+.|+++.
T Consensus 38 ~~~~RiGlsVsKkk~g~AV~RNRiKR~iRe~~r~~~-~~~~~~d~Viiar~~~~~~~~~ 95 (117)
T COG0594 38 LDHPRIGLTVSKKKVGNAVERNRIKRLIREAFRLLQ-HLLPGFDIVIIARKGFLELDFS 95 (117)
T ss_pred CCCceEEEEEEchhccchhhHHHHHHHHHHHHHhhh-hhCCCceEEEEECCCCCCCCHH
Confidence 567899999999 543 344556666666533 4566678888888999987765
No 425
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=35.51 E-value=63 Score=29.03 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=36.2
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHHHHHHh--hhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVVAQQL--GKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~aak~L--~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.|+.+|..+.-.++ .-+...+.|++.|++ +.++. +++.-+.--+.+-. ++..++|.||++| |.|.|+
T Consensus 20 ~~~lvv~d~~t~~~---~g~~v~~~l~~~g~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vG----gG~i~D 89 (250)
T PF13685_consen 20 KKVLVVTDENTYKA---AGEKVEESLKSAGIE---VAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVG----GGTIID 89 (250)
T ss_dssp SEEEEEEETTHHHH---HHHHHHHHHHTTT-E---EEEEE-EE---BHHHHHHHHTTS--TT--EEEEEE----SHHHHH
T ss_pred CcEEEEEcCCHHHH---HHHHHHHHHHHcCCe---EEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeC----CcHHHH
Confidence 48888888775553 334556678888874 33332 33333444443322 2346899999999 567665
No 426
>PLN02417 dihydrodipicolinate synthase
Probab=35.37 E-value=1.1e+02 Score=27.28 Aligned_cols=59 Identities=7% Similarity=0.054 Sum_probs=34.1
Q ss_pred HHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhc---hhcCCceEEEEcCCCCHHHHHHhh
Q 027801 126 AQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAG---VNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 126 ak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~ls---L~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
++.+++ .+.|||+++|.- ||-.... .+=-.-+++.. ....+||+.||-. .+.+++++++
T Consensus 28 i~~l~~-~Gv~Gi~~~Gst--GE~~~ls---~~Er~~~~~~~~~~~~~~~pvi~gv~~-~~t~~~i~~a 89 (280)
T PLN02417 28 VNMQIE-NGAEGLIVGGTT--GEGQLMS---WDEHIMLIGHTVNCFGGKIKVIGNTGS-NSTREAIHAT 89 (280)
T ss_pred HHHHHH-cCCCEEEECccC--cchhhCC---HHHHHHHHHHHHHHhCCCCcEEEECCC-ccHHHHHHHH
Confidence 344443 679999999986 6655431 11111122211 2357999999987 4556666654
No 427
>PRK03980 flap endonuclease-1; Provisional
Probab=35.32 E-value=78 Score=28.99 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 89 VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 89 It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
++..+++.+.+.|+..|+. ++..||-=| .-+..|.+.+..|+|+.
T Consensus 80 vt~~~~~~~k~lL~~~GIp-----~i~AP~EAE--Aq~A~L~~~g~vd~V~S 124 (292)
T PRK03980 80 LTDEIVEDSKKLLDLMGIP-----YVQAPSEGE--AQAAYMAKKGDAWAVGS 124 (292)
T ss_pred CCHHHHHHHHHHHHHCCCC-----EEecCchHH--HHHHHHHHCCCeEEEec
Confidence 5667889999999999874 888999434 23556666666676643
No 428
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=35.20 E-value=1.4e+02 Score=26.78 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=34.3
Q ss_pred cCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 132 SGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 132 ~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
..++||++++|.- ||..+... =-..+.+...+. .+..+||+.||- . +.++|++++
T Consensus 37 ~~Gv~gi~v~Gst--GE~~~Lt~eEr~~v~~~~~~~-~~g~~pvi~gv~-~-~t~~ai~~a 92 (296)
T TIGR03249 37 GYGLEALFAAGGT--GEFFSLTPAEYEQVVEIAVST-AKGKVPVYTGVG-G-NTSDAIEIA 92 (296)
T ss_pred hcCCCEEEECCCC--cCcccCCHHHHHHHHHHHHHH-hCCCCcEEEecC-c-cHHHHHHHH
Confidence 4789999999986 77665411 011222222222 245799999995 4 688888776
No 429
>PTZ00217 flap endonuclease-1; Provisional
Probab=35.07 E-value=68 Score=30.67 Aligned_cols=43 Identities=33% Similarity=0.296 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEE
Q 027801 89 VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAV 138 (218)
Q Consensus 89 It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaV 138 (218)
|+..+++.+.+.|+..|+. ++..|| |-=..+..|.+.+..|+|
T Consensus 135 vt~~~~~~~~~lL~~~Gip-----~i~AP~--EAdaq~A~L~~~g~v~~V 177 (393)
T PTZ00217 135 VTKEQNEDAKKLLRLMGIP-----VIEAPC--EAEAQCAELVKKGKVYAV 177 (393)
T ss_pred CCHHHHHHHHHHHHHcCCc-----eEECCc--CHHHHHHHHHHCCCeEEE
Confidence 4567889999999999975 778898 766677778777767765
No 430
>PRK05595 replicative DNA helicase; Provisional
Probab=34.96 E-value=1.6e+02 Score=28.07 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=46.6
Q ss_pred CeEEEEeCCc--chHHHHHHHhhhcCCccEEEE--Eeeeee--CCchhHHHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 110 NIDVVWVPGS--FEIGVVAQQLGKSGKYTAVLC--IGAVVR--GDTTHYDAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 110 ~I~vv~VPGA--~ELP~aak~L~~~~~yDaVIa--LG~VIr--GeT~H~e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
++.+...||. .||-..++++....++|.||. |+.+-- +...+++.| ..+++.|..++.++++||+---
T Consensus 285 ~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~~~~r~~~v-~~is~~LK~lAke~~i~vi~ls 358 (444)
T PRK05595 285 KIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKGSESRQQEV-SEISRSIKALAKEMECPVIALS 358 (444)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCCCccHHHHH-HHHHHHHHHHHHHhCCeEEEee
Confidence 4556556663 456677777766677887776 566531 112355555 6889999999999999998653
No 431
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=34.93 E-value=1e+02 Score=26.37 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=38.5
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHHHHHHhhhcCCccEEEEE
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVVAQQLGKSGKYTAVLCI 141 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~aak~L~~~~~yDaVIaL 141 (218)
.+.||+++.++-.++ .-.+.|.+.|..-+.+.+|+ +|-..+.+- +..+++.+++|+|+..
T Consensus 117 ~~~~vL~~rg~~~r~-------~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~-~~~~l~~~~~d~i~f~ 177 (240)
T PRK09189 117 PTARLLYLAGRPRAP-------VFEDRLAAAGIPFRVAECYDMLPVMYSPAT-LSAILGGAPFDAVLLY 177 (240)
T ss_pred CCCcEEEeccCcccc-------hhHHHHHhCCCeeEEEEEEEeecCCCChHH-HHHHHhcCCCCEEEEe
Confidence 456788877765543 33567888898777777774 554444333 3445567889988754
No 432
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=34.83 E-value=57 Score=33.02 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCe-EEEEeCCcchHHHHHHHhhh--------cCCccEEEEEeeeeeCC
Q 027801 91 KLLLEGALETFKKYSVKEENI-DVVWVPGSFEIGVVAQQLGK--------SGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 91 ~~Ll~gA~~~L~~~Gv~~e~I-~vv~VPGA~ELP~aak~L~~--------~~~yDaVIaLG~VIrGe 148 (218)
+++.+-+.+.|++.|+..++| .++-|=|+-.+|++-+.+.+ .-+.|-.||+||-+.+.
T Consensus 348 ~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa 414 (663)
T PTZ00400 348 KKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAG 414 (663)
T ss_pred HHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHH
Confidence 344445567788888876555 46678999999999877642 23589999999998763
No 433
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=34.83 E-value=2.1e+02 Score=28.46 Aligned_cols=81 Identities=21% Similarity=0.168 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHH-HhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhc
Q 027801 92 LLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ-QLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNS 170 (218)
Q Consensus 92 ~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak-~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~ 170 (218)
+|.+-+.+...++.- .+++.-+-|.||-.+.+- +.+..++||.||+ ||.|..+ .+ -..
T Consensus 14 ~l~~~~~~i~~~~~~---~~~~~v~~~~~~~~~~~a~~~~~~~~~dviIs-----rG~ta~~-----------i~--~~~ 72 (526)
T TIGR02329 14 RLFDLFRDIAPEFDH---RANITPIQLGFEDAVREIRQRLGAERCDVVVA-----GGSNGAY-----------LK--SRL 72 (526)
T ss_pred HHHHHHHHHHHhCCC---CceEEEEeccHHHHHHHHHHHHHhCCCcEEEE-----CchHHHH-----------HH--HhC
Confidence 455556666666542 134444568887544433 3234668999987 6667543 12 234
Q ss_pred CCceEEEEcCCCCHHHHHHhhCC
Q 027801 171 GVPCIFGVLTCDNMDQALNRAGG 193 (218)
Q Consensus 171 ~vPVifGVLT~~n~eQA~~Rag~ 193 (218)
++||+.-=++..+.-+|+.+|..
T Consensus 73 ~iPVv~i~~s~~Dil~al~~a~~ 95 (526)
T TIGR02329 73 SLPVIVIKPTGFDVMQALARARR 95 (526)
T ss_pred CCCEEEecCChhhHHHHHHHHHh
Confidence 79999999999999999988853
No 434
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=34.72 E-value=1.4e+02 Score=26.47 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCC
Q 027801 93 LLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGV 172 (218)
Q Consensus 93 Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~v 172 (218)
.+...++.|++.|++ ++++.....-+....++++.+ .++|.||+.| ||=.= ++|..||++-.- +.
T Consensus 15 ~~~~~~~~l~~~g~~---~~v~~t~~~~~a~~~a~~~~~-~~~d~vv~~G----GDGTi-----~ev~ngl~~~~~--~~ 79 (293)
T TIGR03702 15 DVREAVGDLRDEGIQ---LHVRVTWEKGDAQRYVAEALA-LGVSTVIAGG----GDGTL-----REVATALAQIRD--DA 79 (293)
T ss_pred HHHHHHHHHHHCCCe---EEEEEecCCCCHHHHHHHHHH-cCCCEEEEEc----CChHH-----HHHHHHHHhhCC--CC
Confidence 344556678888874 666665555556666777653 4589999888 44322 345577764322 23
Q ss_pred ceEEEEcC
Q 027801 173 PCIFGVLT 180 (218)
Q Consensus 173 PVifGVLT 180 (218)
++-+|||-
T Consensus 80 ~~~lgiiP 87 (293)
T TIGR03702 80 APALGLLP 87 (293)
T ss_pred CCcEEEEc
Confidence 33456654
No 435
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=34.71 E-value=94 Score=24.47 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=22.1
Q ss_pred HHHHHHHCCCCCCCeEEEEeCCcchHHHHHH
Q 027801 97 ALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (218)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak 127 (218)
..+.|+++|++ .++.+||...+|+.-.
T Consensus 3 i~~~L~~~Gv~----~vfg~pg~~~~~l~~~ 29 (155)
T cd07035 3 LVEALKAEGVD----HVFGVPGGAILPLLDA 29 (155)
T ss_pred HHHHHHHcCCC----EEEECCCCchHHHHHH
Confidence 46788999997 7999999988887754
No 436
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=34.58 E-value=20 Score=35.72 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCe-EEEEeCCcchHHHHHHHhh
Q 027801 88 LVTKLLLEGALETFKKYSVKEENI-DVVWVPGSFEIGVVAQQLG 130 (218)
Q Consensus 88 ~It~~Ll~gA~~~L~~~Gv~~e~I-~vv~VPGA~ELP~aak~L~ 130 (218)
.+.+++.+-+.+.|++.|+..++| .|+-|=|+--+|++-+.+.
T Consensus 290 ~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~ 333 (599)
T TIGR01991 290 PLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVA 333 (599)
T ss_pred HHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHH
Confidence 344555566677888888877777 4677999999999987775
No 437
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=34.28 E-value=99 Score=25.30 Aligned_cols=26 Identities=35% Similarity=0.621 Sum_probs=21.8
Q ss_pred HHHHHHHCCCCCCCeEEEEeCCcchHHHHH
Q 027801 97 ALETFKKYSVKEENIDVVWVPGSFEIGVVA 126 (218)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA~ELP~aa 126 (218)
..+.|+++|++ .++-+||...+|+.-
T Consensus 3 l~~~L~~~Gi~----~vFg~pG~~~~~l~~ 28 (162)
T cd07038 3 LLERLKQLGVK----HVFGVPGDYNLPLLD 28 (162)
T ss_pred HHHHHHHcCCC----EEEEeCCccHHHHHH
Confidence 45789999997 799999999999753
No 438
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=34.09 E-value=2.8e+02 Score=23.25 Aligned_cols=121 Identities=16% Similarity=0.082 Sum_probs=66.4
Q ss_pred CEEEEEEccc-CHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc---chHH-HHHHHhhh-cCCcc--EEEEEeeeeeC
Q 027801 76 LRFALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGS---FEIG-VVAQQLGK-SGKYT--AVLCIGAVVRG 147 (218)
Q Consensus 76 ~RIaIV~Srf-n~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA---~ELP-~aak~L~~-~~~yD--aVIaLG~VIrG 147 (218)
.||+++.... +......-.+|..+.|+++|+.. ..++.++.. ++-. -+++.+++ ..++| +|+|.
T Consensus 130 ~~i~~i~~~~~~~~~~~~R~~G~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~------ 201 (289)
T cd01540 130 KEVGALRITYDELDTAKPRTDGALEALKAPGFPE--ANIFQAPQKTTDTEGAFDAAASTLTKNPNVKNWIIYGL------ 201 (289)
T ss_pred cceEEEEecCCCCcchhhHHHHHHHHHhcCCCCc--ceEecccccCcchhhHHHHHHHHHHhCCCcCeeEEEeC------
Confidence 5889886322 22345566789999999998753 234444432 3433 23455554 34678 55553
Q ss_pred CchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHH---hh--------CCCCCCcHHHHHHHHHHHHH
Q 027801 148 DTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALN---RA--------GGKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 148 eT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~---Ra--------g~k~gnKG~EAA~aAleM~~ 211 (218)
.|.++..+.+++.+..+. |-=..|++.++..-+.. +. .-....-|..|+..+++++.
T Consensus 202 ----~d~~a~g~~~al~~~g~~---~~di~vig~d~~~~~~~~~~~~~~~~~ttv~~~~~~~g~~a~~~l~~~l~ 269 (289)
T cd01540 202 ----NDETVLGAVRATEQSGIA---AADVIGVGINGSDAADEESKKQPTGFYGTVLISPTNHGYITAQNLYEWIT 269 (289)
T ss_pred ----CcHHHHHHHHHHHHcCCC---CcceEEEecCCchhHHHHhcccCCceEEEEeeChHHhHHHHHHHHHHHHh
Confidence 345677788888887775 21123444444333322 11 01234456666666666553
No 439
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=34.03 E-value=2.3e+02 Score=25.07 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=43.3
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..||+|+.... .....+.+...+.|++.|++. +....+ |+.-+.=-.++++.+ .+.|+|+..+.
T Consensus 138 ~~~v~ii~~~~--~~g~~~~~~~~~~~~~~G~~v--~~~~~~~~~~~d~s~~i~~i~~-~~~d~v~~~~~ 202 (347)
T cd06335 138 FKKVALLLDNT--GWGRSNRKDLTAALAARGLKP--VAVEWFNWGDKDMTAQLLRAKA-AGADAIIIVGN 202 (347)
T ss_pred CCeEEEEeccC--chhhhHHHHHHHHHHHcCCee--EEEeeecCCCccHHHHHHHHHh-CCCCEEEEEec
Confidence 47999998653 345677788888999999852 333334 466776556677644 46898888663
No 440
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=33.84 E-value=1.6e+02 Score=25.04 Aligned_cols=39 Identities=10% Similarity=0.261 Sum_probs=27.4
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS 119 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA 119 (218)
||++|+..|-.. ++.-+..-.+.|.+.|.+ +.++.+...
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~---v~v~~~~~~ 39 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHE---VEIFSLRPP 39 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCe---EEEEEecCc
Confidence 688888777654 556666777888888874 677765544
No 441
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=33.83 E-value=1.6e+02 Score=26.75 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=45.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEE-EEeCCcchHHHHHHHhhhcCCccEEEEEe
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDV-VWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~v-v~VPGA~ELP~aak~L~~~~~yDaVIaLG 142 (218)
..|++++... ....+.+.+...+.+++.|+.. +.. ..-||.-+..-.+.++. ..+.|+|+..|
T Consensus 161 ~k~va~i~~d--~~~g~~~~~~~~~~~~~~G~~v--~~~~~~~~g~~D~~~~v~~l~-~~~~d~v~~~~ 224 (369)
T PRK15404 161 PKRIAVLHDK--QQYGEGLARSVKDGLKKAGANV--VFFEGITAGDKDFSALIAKLK-KENVDFVYYGG 224 (369)
T ss_pred CCEEEEEeCC--CchhHHHHHHHHHHHHHcCCEE--EEEEeeCCCCCchHHHHHHHH-hcCCCEEEECC
Confidence 4689999875 3456778888999999999852 222 33468888877788875 46789887544
No 442
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=33.81 E-value=1.4e+02 Score=25.91 Aligned_cols=60 Identities=7% Similarity=0.116 Sum_probs=40.0
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHHHHHHhhhcCCccEEEEE
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVVAQQLGKSGKYTAVLCI 141 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~aak~L~~~~~yDaVIaL 141 (218)
.+.||+|+.+.=-+++ -.+.|++.|..-+.+.+|+ +|-...-+-.. .+.+.+++|+|+.-
T Consensus 129 ~~~~vLi~rg~~~r~~-------L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~-~~~~~~~~d~v~ft 189 (255)
T PRK05752 129 PDPRVLIMRGEGGREL-------LAERLREQGASVDYLELYRRCLPDYPAGTLL-QRVEAERLNGLVVS 189 (255)
T ss_pred CCCEEEEEccCccHHH-------HHHHHHHCCCEEeEEEEEeecCCCCCHHHHH-HHHHhCCCCEEEEC
Confidence 5679999998876663 3567888898777777775 34333333333 33466889988765
No 443
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=33.77 E-value=3.3e+02 Score=23.95 Aligned_cols=58 Identities=12% Similarity=0.177 Sum_probs=32.2
Q ss_pred CeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 110 NIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 110 ~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
.+.+.|++-+-.-+.-....+ ..|||||.-|- ..... .. -...+++..++.++| ++||
T Consensus 33 ~v~~~~i~~~~~~~~~~~~~l--~~~dgivl~GG----~~~~~--~~--~~~~~i~~~~~~~~P-vlGI 90 (235)
T cd01746 33 KLEIKWIDSEDLEEENAEEAL--KGADGILVPGG----FGIRG--VE--GKILAIKYARENNIP-FLGI 90 (235)
T ss_pred eeEEEEeChhhcCccchhhhh--ccCCEEEECCC----CCCcc--hh--hHHHHHHHHHHCCce-EEEE
Confidence 477778877643222111222 46999999983 32222 11 122345556778999 4576
No 444
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=33.66 E-value=3.2e+02 Score=23.68 Aligned_cols=120 Identities=17% Similarity=0.057 Sum_probs=67.0
Q ss_pred CCCCEEEEEEcc-cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 73 NEGLRFALVVAR-FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 73 ~~~~RIaIV~Sr-fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
....||+++... ........-.+|..+.++++|++. .....+-.+|-. -+++++++ .++|||+|..
T Consensus 170 ~Ghr~I~~i~~~~~~~~~~~~R~~gf~~a~~~~gi~~---~~~~~~~~~~~~~~~~~~~l~-~~~tAi~~~~-------- 237 (311)
T TIGR02405 170 QGHRHISFLGVDPSDKTTGLMRHNAYLAYCESANLEP---IYQTGQLSHESGYVLTDKVLK-PETTALVCAT-------- 237 (311)
T ss_pred cCCCcEEEEccCcccchhHHHHHHHHHHHHHHcCCCc---eeeeCCCCHHHHHHHHHHHHh-cCCCEEEECC--------
Confidence 345689999643 222334556789999999999852 122212222322 23444544 4689999854
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh------CCCCCCcHHHHHHHHHHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA------GGKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra------g~k~gnKG~EAA~aAleM~~ 211 (218)
|.++-.+.+.|.+..++ ++ .|++.++.+.+.-.. .-.....|..|+...+++++
T Consensus 238 --D~~A~g~~~~l~~~g~~-dv----svvgfd~~~~~~~~~p~lttv~~~~~~~g~~A~~~L~~~i~ 297 (311)
T TIGR02405 238 --DTLALGAAKYLQELDRS-DV----QVSSVGNTPLLSFLFPNTVSIDPGYYEAGKAAASQLIKQLA 297 (311)
T ss_pred --cHHHHHHHHHHHHcCCC-Ce----EEEeeCCchhhcccCCCCceEecCHHHHHHHHHHHHHHHHh
Confidence 45777777778777763 33 445556654443210 01122356666666666554
No 445
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=33.57 E-value=3.1e+02 Score=23.62 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=33.1
Q ss_pred CEEEEEEcc--cCHHHHHHHHHHHHHHHHH---CC-CCCCCeEEEEeCCcch---HHHHHHHhhhcCCccEEEEE
Q 027801 76 LRFALVVAR--FNELVTKLLLEGALETFKK---YS-VKEENIDVVWVPGSFE---IGVVAQQLGKSGKYTAVLCI 141 (218)
Q Consensus 76 ~RIaIV~Sr--fn~~It~~Ll~gA~~~L~~---~G-v~~e~I~vv~VPGA~E---LP~aak~L~~~~~yDaVIaL 141 (218)
+|||++.+. -.......+++++.-.++. .| +.-..++++..-.... ---++++|.+.++.|+||..
T Consensus 1 i~IG~~~~lsG~~a~~g~~~~~~~~~a~~~iN~~ggi~G~~v~l~~~D~~~d~~~~~~~~~~l~~~~~v~avig~ 75 (336)
T cd06326 1 IVLGQSAPLSGPAAALGRAYRAGAQAYFDAVNAAGGVNGRKIELVTLDDGYEPERTVANTRKLIEDDKVFALFGY 75 (336)
T ss_pred CEEEEeccCCCcchhhHHHHHHHHHHHHHHHHhcCCcCCceEEEEEeCCCCChHHHHHHHHHHHhhcCcEEEEeC
Confidence 366666542 1123344455555544444 33 3333566665533222 22345666655678888763
No 446
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=33.16 E-value=1.4e+02 Score=30.65 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=59.4
Q ss_pred CCCCEEEEEEcccCH-----HHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc------------hHH------HHHHHh
Q 027801 73 NEGLRFALVVARFNE-----LVTKLLLEGALETFKKYSVKEENIDVVWVPGSF------------EIG------VVAQQL 129 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~-----~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~------------ELP------~aak~L 129 (218)
-+...|+|+-+ ||+ .--+.|.+...+...+.|--+ -.+.+|+-- .|| -.+...
T Consensus 31 ~~kP~IgI~ns-~~e~~pch~hl~~la~~vk~gi~~aGG~p---~ef~ti~v~Dgit~g~~GM~ySL~SRelIAdsiE~~ 106 (615)
T PRK12448 31 FGKPIIAVVNS-FTQFVPGHVHLKDLGQLVAREIEAAGGVA---KEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYM 106 (615)
T ss_pred hCCCEEEEEec-cccCcCchhhHHHHHHHHHHHHHHcCCee---eEeccCcccCCcCcCCccceechhhHHHHHHHHHHH
Confidence 35678998876 553 334577788888888888543 233344322 222 122333
Q ss_pred hhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 130 GKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 130 ~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
++...|||+|+||- |+-..-|.+-..+..|+|-+|--
T Consensus 107 ~~a~~~Dg~V~i~~------------CDK~~PG~lMaaarlniPsi~v~ 143 (615)
T PRK12448 107 VNAHCADAMVCISN------------CDKITPGMLMAALRLNIPVVFVS 143 (615)
T ss_pred hhCCCcceEEEecc------------CCCchHHHHHHHHhcCCCEEEEe
Confidence 46789999999985 66677777778888899988754
No 447
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=33.07 E-value=1.1e+02 Score=25.63 Aligned_cols=10 Identities=20% Similarity=0.710 Sum_probs=4.6
Q ss_pred EEEEEcccCH
Q 027801 78 FALVVARFNE 87 (218)
Q Consensus 78 IaIV~Srfn~ 87 (218)
|.||...||+
T Consensus 3 vsIiIp~~Ne 12 (241)
T cd06427 3 YTILVPLYKE 12 (241)
T ss_pred EEEEEecCCc
Confidence 3444444444
No 448
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=33.04 E-value=3.4e+02 Score=23.78 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHC--CCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEE
Q 027801 92 LLLEGALETFKKY--SVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVL 139 (218)
Q Consensus 92 ~Ll~gA~~~L~~~--Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVI 139 (218)
.+.+++.-.+++. |+.-..|+++..--..+-. -++++|++.++.++||
T Consensus 18 ~~~~g~~lAv~~inggi~G~~i~l~~~D~~~~p~~a~~~~~~lv~~~~v~~vi 70 (333)
T cd06359 18 DMRDGFQLALKQLGGKLGGLPVEVVVEDDGLKPDVAKQAAERLIKRDKVDFVT 70 (333)
T ss_pred HHHHHHHHHHHHhCCccCCEEEEEEecCCCCChHHHHHHHHHHHhhcCCcEEE
Confidence 4444544444432 3333345555554433322 2334455445566555
No 449
>PRK13410 molecular chaperone DnaK; Provisional
Probab=32.85 E-value=28 Score=35.33 Aligned_cols=61 Identities=28% Similarity=0.361 Sum_probs=41.3
Q ss_pred HHHHHHHHHHH----HHHHHHCCCCCCCeE-EEEeCCcchHHHHHHHhhh--------cCCccEEEEEeeeeeC
Q 027801 87 ELVTKLLLEGA----LETFKKYSVKEENID-VVWVPGSFEIGVVAQQLGK--------SGKYTAVLCIGAVVRG 147 (218)
Q Consensus 87 ~~It~~Ll~gA----~~~L~~~Gv~~e~I~-vv~VPGA~ELP~aak~L~~--------~~~yDaVIaLG~VIrG 147 (218)
+.+++.|++.+ .+.|++.|+..++|+ |+-|=|+--+|++-+.+.+ .-+.|-.||+||-|.+
T Consensus 301 E~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~a 374 (668)
T PRK13410 301 ESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQA 374 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHH
Confidence 34444555554 577788888776665 6779999999999877642 1246666777776543
No 450
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=32.57 E-value=31 Score=34.32 Aligned_cols=59 Identities=24% Similarity=0.372 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeE-EEEeCCcchHHHHHHHhhh--------cCCccEEEEEeeeeeC
Q 027801 89 VTKLLLEGALETFKKYSVKEENID-VVWVPGSFEIGVVAQQLGK--------SGKYTAVLCIGAVVRG 147 (218)
Q Consensus 89 It~~Ll~gA~~~L~~~Gv~~e~I~-vv~VPGA~ELP~aak~L~~--------~~~yDaVIaLG~VIrG 147 (218)
+.++..+-..+.|++.|+..++|+ ++-|=|+-.+|.+-+.+.+ .-+.|-.||+||-+.|
T Consensus 305 l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~a 372 (627)
T PRK00290 305 LVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQG 372 (627)
T ss_pred HHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHH
Confidence 333444445567788888766664 6779999999999877642 1246777777776654
No 451
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=32.24 E-value=1.9e+02 Score=24.64 Aligned_cols=66 Identities=11% Similarity=0.045 Sum_probs=40.4
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
..+.||++|-+--+ ..+...+...+.+++. |+. +..+.+.. -|-..+.+ ..+|+|+.-| |.|.+
T Consensus 29 ~~~~~i~~IptAs~--~~~~~~~~~~~a~~~l~G~~---~~~~~~~~---~~~~~~~l---~~ad~I~l~G----G~~~~ 93 (212)
T cd03146 29 KARPKVLFVPTASG--DRDEYTARFYAAFESLRGVE---VSHLHLFD---TEDPLDAL---LEADVIYVGG----GNTFN 93 (212)
T ss_pred cCCCeEEEECCCCC--CHHHHHHHHHHHHhhccCcE---EEEEeccC---cccHHHHH---hcCCEEEECC----chHHH
Confidence 46789999976655 2335566677888888 874 33333322 33333444 2678887777 66666
Q ss_pred HH
Q 027801 152 YD 153 (218)
Q Consensus 152 ~e 153 (218)
+=
T Consensus 94 ~~ 95 (212)
T cd03146 94 LL 95 (212)
T ss_pred HH
Confidence 53
No 452
>PRK05989 cobN cobaltochelatase subunit CobN; Reviewed
Probab=32.23 E-value=2.9e+02 Score=30.67 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=59.2
Q ss_pred CEEEEEEcccCHHH-HHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc--hHHHHHHHhh-hcCCccEEEEEeeeeeCCchh
Q 027801 76 LRFALVVARFNELV-TKLLLEGALETFKKYSVKEENIDVVWVPGSF--EIGVVAQQLG-KSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 76 ~RIaIV~Srfn~~I-t~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~--ELP~aak~L~-~~~~yDaVIaLG~VIrGeT~H 151 (218)
.+|+|+..|-+-.= --..++.-++.|++.|+. +.-+.+.+.- +..-++..+. .....|+||.+..---|..
T Consensus 202 p~vgilfyr~~~~~~~~~~idali~~Le~~G~n---vipvf~~~~k~~~~~~~~~~~~~~~~~vd~ii~~~~f~l~~~-- 276 (1244)
T PRK05989 202 PTVAILFYRAHLQAGNTAPIDALIAALEARGLN---PLPVFVSSLKDAESPEVLEDLFNADALVDAVLNATGFALAAA-- 276 (1244)
T ss_pred CeEEEEEecchhccCCcHHHHHHHHHHHHCCCe---EEEEEecCccccchHHHHHHHhcCCCCccEEEEcCCccccCc--
Confidence 68999987765211 224555667899999984 4545566653 2344555555 5567899996554321210
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHh
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~R 190 (218)
.. +. .+=-+.|+||+.+|....+ .+.|+.
T Consensus 277 -----~~---~~-~~l~~lnvPVlq~i~~~~~-~~~W~~ 305 (1244)
T PRK05989 277 -----AW---DV-EVLAALDVPVLQVICSGGN-REAWEA 305 (1244)
T ss_pred -----ch---hh-HHHHHCCCCEEEEeeCCCC-HHHHhh
Confidence 00 11 2223569999999998744 444554
No 453
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=32.15 E-value=1.9e+02 Score=20.69 Aligned_cols=54 Identities=24% Similarity=0.198 Sum_probs=37.9
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK 131 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~ 131 (218)
.++|.||...||++ ..+..|++.+.+.......+-++.-...-+.+-.++.+..
T Consensus 2 ~~~~siiip~~n~~---~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~ 55 (291)
T COG0463 2 MPKVSVVIPTYNEE---EYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGA 55 (291)
T ss_pred CccEEEEEeccchh---hhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhh
Confidence 36899999999998 7788888888887665312444444445556777777753
No 454
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=31.99 E-value=1.6e+02 Score=26.49 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=32.7
Q ss_pred cCCccEEEEEeeeeeCCchhH--HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 132 SGKYTAVLCIGAVVRGDTTHY--DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 132 ~~~yDaVIaLG~VIrGeT~H~--e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
..++||++++|.- ||-.+. |--.+ +.+-..+ .....+||+.||-. .+.+++++++
T Consensus 32 ~~Gv~gi~v~Gst--GE~~~Ls~~Er~~-l~~~~~~-~~~g~~pvi~gv~~-~~t~~ai~~a 88 (294)
T TIGR02313 32 EGGSHAISVGGTS--GEPGSLTLEERKQ-AIENAID-QIAGRIPFAPGTGA-LNHDETLELT 88 (294)
T ss_pred HcCCCEEEECccC--cccccCCHHHHHH-HHHHHHH-HhCCCCcEEEECCc-chHHHHHHHH
Confidence 4689999999986 665543 11111 1111111 12457999999987 5566666554
No 455
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=31.69 E-value=27 Score=35.41 Aligned_cols=59 Identities=22% Similarity=0.283 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCe-EEEEeCCcchHHHHHHHhhh--------cCCccEEEEEeeeeeC
Q 027801 89 VTKLLLEGALETFKKYSVKEENI-DVVWVPGSFEIGVVAQQLGK--------SGKYTAVLCIGAVVRG 147 (218)
Q Consensus 89 It~~Ll~gA~~~L~~~Gv~~e~I-~vv~VPGA~ELP~aak~L~~--------~~~yDaVIaLG~VIrG 147 (218)
+.+++++-+.+.|++.|+..++| +|+-|=|+--+|.+-+.+.+ .-+.|-.||+||-|.|
T Consensus 332 l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a 399 (657)
T PTZ00186 332 LIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLG 399 (657)
T ss_pred HHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHH
Confidence 34444555667788888876655 47779999999998776642 2356777888876654
No 456
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=31.42 E-value=3.8e+02 Score=23.85 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=53.6
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC--cchHHHHHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG--SFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG--A~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
+...||+||-+--. .-+...+...+.|+++|+. ++.++.++- .-+-|-..+.+. ..|+|..-| |+|.
T Consensus 26 ~~~~rI~~iptAS~--~~~~~~~~~~~~~~~lG~~--~v~~l~i~~r~~a~~~~~~~~l~---~ad~I~~~G----Gnq~ 94 (250)
T TIGR02069 26 GEDAIIVIITSASE--EPREVGERYITIFSRLGVK--EVKILDVREREDASDENAIALLS---NATGIFFTG----GDQL 94 (250)
T ss_pred CCCceEEEEeCCCC--ChHHHHHHHHHHHHHcCCc--eeEEEecCChHHccCHHHHHHHh---hCCEEEEeC----CCHH
Confidence 45679999974322 1223455678888999985 577777743 223355556664 789998888 7887
Q ss_pred hHHHHHHH--HHHHHHHhchhcCCce
Q 027801 151 HYDAVANS--AASGVLSAGVNSGVPC 174 (218)
Q Consensus 151 H~e~Va~~--vs~gLm~lsL~~~vPV 174 (218)
++--.... +.+.|.+. ++.++|+
T Consensus 95 ~l~~~l~~t~l~~~l~~~-~~~G~vi 119 (250)
T TIGR02069 95 RITSLLGDTPLLDRLRKR-VHEGIIL 119 (250)
T ss_pred HHHHHHcCCcHHHHHHHH-HHcCCeE
Confidence 77433322 22333333 4556443
No 457
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=31.28 E-value=3.6e+02 Score=23.64 Aligned_cols=74 Identities=18% Similarity=0.073 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHCC--CCCCCeEEEEeCCcchHHHH---HHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHh
Q 027801 92 LLLEGALETFKKYS--VKEENIDVVWVPGSFEIGVV---AQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSA 166 (218)
Q Consensus 92 ~Ll~gA~~~L~~~G--v~~e~I~vv~VPGA~ELP~a---ak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~l 166 (218)
.-++-|++++.+.| +.-..+++++.-...+-..+ +++|++.++.++|| |.. +..++..+.++
T Consensus 19 ~~~~lAv~~iN~~gg~~~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~~v~~vi--G~~-----------~s~~~~a~~~~ 85 (350)
T cd06366 19 PAIEMALEDVNADNSILPGYRLVLHVRDSKCDPVQAASAALDLLENKPVVAII--GPQ-----------CSSVAEFVAEV 85 (350)
T ss_pred HHHHHHHHHHhcCCCcCCCcEEEEEecCCCCCHHHHHHHHHHHhccCCceEEE--CCC-----------cHHHHHHHHHH
Confidence 44466778888775 34456777777665554443 34455555666655 332 55666677777
Q ss_pred chhcCCceEEEE
Q 027801 167 GVNSGVPCIFGV 178 (218)
Q Consensus 167 sL~~~vPVifGV 178 (218)
.-+.++|++..-
T Consensus 86 ~~~~~ip~i~~~ 97 (350)
T cd06366 86 ANEWNVPVLSFA 97 (350)
T ss_pred hhcCCeeEEecc
Confidence 778899987643
No 458
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=31.28 E-value=1.1e+02 Score=29.67 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=24.3
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHH
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQ 128 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~ 128 (218)
+.-.+.|+++|+. .++-|||...+|+.-..
T Consensus 13 ~~l~~~L~~~GV~----~vFgvpG~~~~~l~~~l 42 (568)
T PRK07449 13 AVILEELTRLGVR----HVVIAPGSRSTPLTLAA 42 (568)
T ss_pred HHHHHHHHHcCCC----EEEECCCCccHHHHHHH
Confidence 4456789999997 79999999999986443
No 459
>PRK15398 aldehyde dehydrogenase EutE; Provisional
Probab=31.12 E-value=4.4e+02 Score=25.54 Aligned_cols=98 Identities=17% Similarity=0.030 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc-chHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhc
Q 027801 89 VTKLLLEGALETFKKYSVKEENIDVVWVPGS-FEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAG 167 (218)
Q Consensus 89 It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA-~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~ls 167 (218)
....|.+-..+.|.+.|+++..+.++ +|. -| +.+.|+++.++|.|.--|. |..-..|+. ....+.
T Consensus 171 t~~~l~~ll~~~l~eaGlP~gvv~vv--~g~~~~---~~~~L~~~~~vd~I~fTGS-----~~~G~~v~~----~~k~~~ 236 (465)
T PRK15398 171 VSLRAIELLNEAIVAAGGPENLVVTV--AEPTIE---TAQRLMKHPGIALLVVTGG-----PAVVKAAMK----SGKKAI 236 (465)
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEe--cCCCHH---HHHHHHcCCCccEEEeeCC-----HHHHHHHHH----cCCcee
Confidence 33344444455677889876555554 552 23 3567777778999987765 444444443 122222
Q ss_pred hhcCCceEEEEcCCCCHHHHHHhhC-CCCCCcHH
Q 027801 168 VNSGVPCIFGVLTCDNMDQALNRAG-GKSGNKGA 200 (218)
Q Consensus 168 L~~~vPVifGVLT~~n~eQA~~Rag-~k~gnKG~ 200 (218)
++.+=---.=|+-.-|.++|.+++- ++..|.|.
T Consensus 237 ~elGGk~p~IV~~dADld~Aa~~i~~g~~~n~GQ 270 (465)
T PRK15398 237 GAGAGNPPVVVDETADIEKAARDIVKGASFDNNL 270 (465)
T ss_pred eecCCCceEEEecCCCHHHHHHHHHHhcccCCCC
Confidence 2221000111223357899988854 46666664
No 460
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=31.06 E-value=1e+02 Score=28.77 Aligned_cols=64 Identities=14% Similarity=-0.023 Sum_probs=34.8
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEE-EeCCcchHHHH--HHHhhhcC---CccEEEEEeeeeeCCc
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV-WVPGSFEIGVV--AQQLGKSG---KYTAVLCIGAVVRGDT 149 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv-~VPGA~ELP~a--ak~L~~~~---~yDaVIaLG~VIrGeT 149 (218)
.++.||...+-.. ++..+.|++.|+. +.++ .|++-=.+..+ +..+++.. ++|.||++| |..
T Consensus 26 ~~~lvvtd~~~~~------~~v~~~L~~~g~~---~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiG----GGS 92 (347)
T cd08184 26 DPAVFFVDDVFQG------KDLISRLPVESED---MIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIG----GGS 92 (347)
T ss_pred CeEEEEECcchhh------hHHHHHHHhcCCc---EEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeC----CcH
Confidence 3566666444332 4556678877764 4444 24332222222 22234444 899999999 555
Q ss_pred hhH
Q 027801 150 THY 152 (218)
Q Consensus 150 ~H~ 152 (218)
.-+
T Consensus 93 ~iD 95 (347)
T cd08184 93 TLD 95 (347)
T ss_pred HHH
Confidence 544
No 461
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=30.99 E-value=60 Score=27.35 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 88 LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 88 ~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
++...|++.|.+.+++.|+. .+++++.-.+.-.+| ..+.||.|++-+..
T Consensus 104 D~~~~~~~~a~~~l~~~~~~-~~v~~~~~d~~~~~~-------~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 104 EIVKELAIYAAQNIERLGYW-GVVEVYHGDGKRGLE-------KHAPFDAIIVTAAA 152 (205)
T ss_pred eCCHHHHHHHHHHHHHcCCC-CcEEEEECCcccCCc-------cCCCccEEEEccCc
Confidence 34456778888899988874 246666544432222 13689999987764
No 462
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=30.97 E-value=70 Score=29.92 Aligned_cols=61 Identities=36% Similarity=0.551 Sum_probs=41.8
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhh-hcCCccEEEEEeeeeeCCchhH
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLG-KSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~-~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
++.++++-...-|++ -+++++++-.+ -+.||| |=+ ++|+ ..+++|..+|+|||-|-.+.-|
T Consensus 66 rg~~Fg~~~G~r~~e--------GR~ef~kY~a~-----AIev~g----pEv-~~l~~la~~~~v~lv~G~iEreg~TLY 127 (337)
T KOG0805|consen 66 RGFRFGLAVGVRNEE--------GRDEFRKYHAS-----AIEVPG----PEV-ERLAELAKKNNVYLVMGAIEREGYTLY 127 (337)
T ss_pred CcceeeEEEeecchh--------hhHHHHHHHHH-----hhcCCC----hHH-HHHHHHhhcCCeEEEEEEEeccccEEE
Confidence 567888888777765 35566665432 456888 433 3332 3478999999999999777655
No 463
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=30.46 E-value=2.3e+02 Score=29.43 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=46.6
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
+.+.||+||. +....+. .-.+.|++.|+. +.++..+=.-++| +...||+||..|=. |....+
T Consensus 514 ~~~~~IlVID--~gds~~~----~l~~~L~~~G~~---v~vv~~~~~~~~~-------~~~~~DgLILsgGP--Gsp~d~ 575 (717)
T TIGR01815 514 GEGRRILLVD--HEDSFVH----TLANYLRQTGAS---VTTLRHSHAEAAF-------DERRPDLVVLSPGP--GRPADF 575 (717)
T ss_pred CCCCEEEEEE--CCChhHH----HHHHHHHHCCCe---EEEEECCCChhhh-------hhcCCCEEEEcCCC--CCchhc
Confidence 4778999997 3333333 335566777873 5666555222332 23579999998776 443332
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
+. ..+++-.++.++|| +||
T Consensus 576 ~~------~~~I~~~~~~~iPv-LGI 594 (717)
T TIGR01815 576 DV------AGTIDAALARGLPV-FGV 594 (717)
T ss_pred cc------HHHHHHHHHCCCCE-EEE
Confidence 21 23344445778996 454
No 464
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=30.44 E-value=2.4e+02 Score=26.59 Aligned_cols=65 Identities=12% Similarity=-0.008 Sum_probs=41.2
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHHHHHHhhhcCCccEEEEEe
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~aak~L~~~~~yDaVIaLG 142 (218)
-.||+||... .+......+...+.+++.|+.....+.+. .|+.-++--.++++. ....|++|.++
T Consensus 186 W~~Vaii~~~--~~yg~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~lk-~~~~da~vvv~ 251 (472)
T cd06374 186 WTYVSAVHTE--GNYGESGMEAFKELAAHEGLCIAHSDKIYSNAGEQSFDRLLRKLR-SRLPKARVVVC 251 (472)
T ss_pred CcEEEEEEec--chHHHHHHHHHHHHHHHCCeeEEEEEEecCCCchHHHHHHHHHHH-hcCCCcEEEEE
Confidence 4689999874 34566777888889999997421111122 356666666677763 34578876654
No 465
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=30.42 E-value=1.5e+02 Score=27.04 Aligned_cols=94 Identities=22% Similarity=0.288 Sum_probs=51.6
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC------CcchHHH-HHHHhhhcCCccEEEEEeeeeeCCc
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP------GSFEIGV-VAQQLGKSGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP------GA~ELP~-aak~L~~~~~yDaVIaLG~VIrGeT 149 (218)
+|+|| .+.++.-+..+++...+.|+++|+. ++.-+ +.-++|. ..+.+ ...+|.||++|= +=
T Consensus 7 ~v~iv-~~~~~~~~~e~~~~i~~~L~~~g~~-----v~v~~~~~~~~~~~~~~~~~~~~~--~~~~d~vi~~GG----DG 74 (291)
T PRK02155 7 TVALI-GRYQTPGIAEPLESLAAFLAKRGFE-----VVFEADTARNIGLTGYPALTPEEI--GARADLAVVLGG----DG 74 (291)
T ss_pred EEEEE-ecCCCHHHHHHHHHHHHHHHHCCCE-----EEEecchhhhcCcccccccChhHh--ccCCCEEEEECC----cH
Confidence 58888 4555555666788888999998874 22211 2111221 11222 246999999984 32
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceE------EEEcCC---CCHHHHHHhh
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCI------FGVLTC---DNMDQALNRA 191 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVi------fGVLT~---~n~eQA~~Ra 191 (218)
.- .+.+..+. ..++||. .|.|+. ++.++++++.
T Consensus 75 t~--------l~~~~~~~-~~~~pilGIn~G~lGFL~~~~~~~~~~~l~~~ 116 (291)
T PRK02155 75 TM--------LGIGRQLA-PYGVPLIGINHGRLGFITDIPLDDMQETLPPM 116 (291)
T ss_pred HH--------HHHHHHhc-CCCCCEEEEcCCCccccccCCHHHHHHHHHHH
Confidence 21 12222222 4688866 344554 4446666665
No 466
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=30.29 E-value=60 Score=24.93 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=43.6
Q ss_pred HHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhc-CCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCce
Q 027801 96 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKS-GKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPC 174 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~-~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPV 174 (218)
|.-+.|+++|++ ...+...++. .-|-+...+ +. +++|.||.+=- |...+ -.+.-...|-+.++++++|+
T Consensus 33 gTa~~L~~~Gi~--~~~v~~~~~~-g~~~i~~~i-~~~g~idlVIn~~~---~~~~~---~~~~dg~~iRR~A~~~~Ip~ 102 (112)
T cd00532 33 GTSRVLADAGIP--VRAVSKRHED-GEPTVDAAI-AEKGKFDVVINLRD---PRRDR---CTDEDGTALLRLARLYKIPV 102 (112)
T ss_pred HHHHHHHHcCCc--eEEEEecCCC-CCcHHHHHH-hCCCCEEEEEEcCC---CCccc---ccCCChHHHHHHHHHcCCCE
Confidence 566678888885 2223333331 236666665 56 99999998742 33311 01223557888999999998
Q ss_pred EE
Q 027801 175 IF 176 (218)
Q Consensus 175 if 176 (218)
+-
T Consensus 103 ~T 104 (112)
T cd00532 103 TT 104 (112)
T ss_pred EE
Confidence 64
No 467
>TIGR02257 cobalto_cobN cobaltochelatase, CobN subunit.
Probab=30.24 E-value=4.7e+02 Score=28.85 Aligned_cols=103 Identities=14% Similarity=0.174 Sum_probs=56.9
Q ss_pred CCEEEEEEcccCHHH-HHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHh---hhcCCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELV-TKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL---GKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~I-t~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L---~~~~~yDaVIaLG~VIrGeT~ 150 (218)
+.+|+|+.-|-+-.= --..++.-+++|++.|+. ..-+.+++-.+ |-..+.+ ......|+||.+-..--|...
T Consensus 191 ~p~vgilfyr~~~~~~~~~~idali~~Le~~G~~---~ipvf~~sl~~-~~~~~~~~~~~~~~~vd~iin~~~F~~~~~~ 266 (1122)
T TIGR02257 191 GPRVGILFYRSLLLAGDTALIEALIDALRQRGLN---PVPIFVSSLKD-PAVQAGLLDALKEEDPALIITTTGFASSNEQ 266 (1122)
T ss_pred CCEEEEEEehhhhhcCCcHHHHHHHHHHHHCCCe---EEEEEeCCCCc-hhHHHHHHHhccCCCCcEEEECCcccccCCc
Confidence 578999886664210 113445556789999984 55566777554 4333333 234468999975332112111
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
.+ ....-| -+.|+||+.+++...+. +.|+..
T Consensus 267 -~~----~~~~~l----~~l~vPVlq~i~~~~s~-~~W~~s 297 (1122)
T TIGR02257 267 -AD----NGETLW----DSLGVPVLQVISSNTSR-EVWEDS 297 (1122)
T ss_pred -ch----hhHHHH----HHCCCCEEEeecCCCCH-HHHHhC
Confidence 11 111112 24699999998875444 445543
No 468
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=30.03 E-value=4.6e+02 Score=24.80 Aligned_cols=83 Identities=20% Similarity=0.194 Sum_probs=48.4
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
.+.|.+.|+++..+.++ +|.-+ -+.+.|++ .+|.| ...|.+.....|+..+..-+..+.++.+=---.-
T Consensus 165 ~~~~~~aglP~gv~~~v--~g~~~--~~~~~l~~--~~~~V-----~fTGs~~~g~~i~~~aa~~~~~~~lElgG~~p~i 233 (454)
T cd07101 165 VELLIEAGLPRDLWQVV--TGPGS--EVGGAIVD--NADYV-----MFTGSTATGRVVAERAGRRLIGCSLELGGKNPMI 233 (454)
T ss_pred HHHHHHcCcCCCcEEEE--eCCcH--HHHHHHHh--CCCEE-----EEECCHHHHHHHHHHHHhcCCcEEEECCCCceEE
Confidence 45566777775555543 44211 12344443 25542 3578888888888888776666666544333333
Q ss_pred EcCCCCHHHHHHhh
Q 027801 178 VLTCDNMDQALNRA 191 (218)
Q Consensus 178 VLT~~n~eQA~~Ra 191 (218)
|+-..|.++|.+++
T Consensus 234 V~~dAdl~~a~~~i 247 (454)
T cd07101 234 VLEDADLDKAAAGA 247 (454)
T ss_pred ECCCCCHHHHHHHH
Confidence 44556888887664
No 469
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=29.80 E-value=2.3e+02 Score=25.55 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=43.0
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCC--CCeEEEEe-CCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKE--ENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~--e~I~vv~V-PGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.-.||+||... .+....+++...+.+++.|+.. .......+ |+.-+..-.++++ +..+.|.||..|-
T Consensus 153 ~w~~vaii~~~--~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~d~~~~l~~i-k~~~~~vIvl~~~ 222 (377)
T cd06379 153 KWNKVILLVSD--DHEGRAAQKRFETLLEEREIEFKIKVEKVVEFEPGEKNVTSLLQEA-KELTSRVILLSAS 222 (377)
T ss_pred CCeEEEEEEEc--CcchhHHHHHHHHHHHhcCCccceeeeEEEecCCchhhHHHHHHHH-hhcCCeEEEEEcC
Confidence 34689999763 3445667788889999988721 01122234 5766676777777 4567888885443
No 470
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=29.71 E-value=3.6e+02 Score=23.14 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=20.2
Q ss_pred HHHHHHHCCCCCCCeEEEEeCCcchHHHH---HHHhhhcCCccEEE
Q 027801 97 ALETFKKYSVKEENIDVVWVPGSFEIGVV---AQQLGKSGKYTAVL 139 (218)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA~ELP~a---ak~L~~~~~yDaVI 139 (218)
|.+++.+-|+....++++...-..+-..+ +++|++.+++|+||
T Consensus 26 a~~~iN~ggi~g~~i~l~~~d~~~~~~~a~~~~~~li~~~~v~~vi 71 (312)
T cd06333 26 LPDEINAGGIGGEKVELIVLDDGSDPTKAVTNARKLIEEDKVDAII 71 (312)
T ss_pred HHHHHhcCCcCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCeEEEE
Confidence 33444432344445565555544443322 33344445666665
No 471
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=29.67 E-value=3.7e+02 Score=23.49 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=49.4
Q ss_pred cccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeee
Q 027801 67 TGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVV 145 (218)
Q Consensus 67 ~~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VI 145 (218)
.|++......+|+||-+|--.+....+.+...+.|.+.|+ .++ --|+.=+=.++.+.+...+-..|.+||+-+
T Consensus 36 ~Gn~~ll~~~~iaIvGsR~~s~~~~~~a~~l~~~l~~~g~-----~IV-SG~A~GiD~~ah~~al~~~g~tIaVl~~gl 108 (220)
T TIGR00732 36 KGDLPLLSQRKVAIVGTRRPTKYGERWTRKLAEELAKNGV-----TIV-SGLALGIDGIAHKAALKVNGRTIAVLGTGL 108 (220)
T ss_pred ECCcccccCCeEEEEcCCCCCHHHHHHHHHHHHHHHhCCC-----EEE-cCchhhHHHHHHHHHHHcCCCEEEEECCCC
Confidence 4665434457899999997666666777777777777665 233 356677888887776555556677777654
No 472
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.63 E-value=1.7e+02 Score=26.84 Aligned_cols=95 Identities=16% Similarity=0.184 Sum_probs=50.6
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HH-----HHHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IG-----VVAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP-----~aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
||+||.-.-. .-...+++...+.|+++|++ ++..+...+ +| ..... ....++|.||++|- +=.
T Consensus 6 ~v~iv~~~~k-~~a~e~~~~i~~~L~~~gie-----v~v~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~~GG----DGt 74 (295)
T PRK01231 6 NIGLIGRLGS-SSVVETLRRLKDFLLDRGLE-----VILDEETAEVLPGHGLQTVSRK-LLGEVCDLVIVVGG----DGS 74 (295)
T ss_pred EEEEEecCCC-HHHHHHHHHHHHHHHHCCCE-----EEEecchhhhcCcccccccchh-hcccCCCEEEEEeC----cHH
Confidence 6888854444 44556677778889988864 332221111 11 11101 11246999999984 321
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceE------EEEcCC---CCHHHHHHhh
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCI------FGVLTC---DNMDQALNRA 191 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVi------fGVLT~---~n~eQA~~Ra 191 (218)
-- +....+ ...++||+ .|.|+. ++.++++++.
T Consensus 75 ~l--------~~~~~~-~~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~ 115 (295)
T PRK01231 75 LL--------GAARAL-ARHNVPVLGINRGRLGFLTDIRPDELEFKLAEV 115 (295)
T ss_pred HH--------HHHHHh-cCCCCCEEEEeCCcccccccCCHHHHHHHHHHH
Confidence 11 111122 25688876 355664 4456677765
No 473
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=29.52 E-value=1.1e+02 Score=29.67 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=28.7
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEE
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVL 139 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVI 139 (218)
+.-.+.|+++|++ ++|-+||..++|+. ..|.++.+..-|.
T Consensus 12 ~~l~~~L~~~GV~----~vFg~pG~~~~~l~-~al~~~~~i~~v~ 51 (557)
T PRK08199 12 QILVDALRANGVE----RVFCVPGESYLAVL-DALHDETDIRVIV 51 (557)
T ss_pred HHHHHHHHHcCCC----EEEeCCCcchhHHH-HHhhccCCCcEEE
Confidence 4567889999997 79999999999986 4443333344443
No 474
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=29.34 E-value=5.2e+02 Score=24.79 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=54.5
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHH-HHHHhchhcCCceEE
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAAS-GVLSAGVNSGVPCIF 176 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~-gLm~lsL~~~vPVif 176 (218)
.+.|.+.|+++.-+.++.=+|. + +.+.|..+.++|+|+--| .+.-...|...+.. .+..+.++.+=---.
T Consensus 192 ~~~l~~aGlP~gvv~~v~g~~~-~---~~~~L~~~~~vd~V~ftG-----s~~~g~~i~~~aa~~~~~~~~lElGG~~~~ 262 (481)
T cd07141 192 ASLIKEAGFPPGVVNVVPGYGP-T---AGAAISSHPDIDKVAFTG-----STEVGKLIQQAAGKSNLKRVTLELGGKSPN 262 (481)
T ss_pred HHHHHHcCcCccceEEEecCch-H---HHHHHhcCCCCCEEEEEC-----cHHHHHHHHHHhhhhcCceEEEEcCCCCeE
Confidence 4777888988655555533332 2 356677778899887654 56777777777765 566677665533333
Q ss_pred EEcCCCCHHHHHHhh
Q 027801 177 GVLTCDNMDQALNRA 191 (218)
Q Consensus 177 GVLT~~n~eQA~~Ra 191 (218)
-|+-..|.++|.+++
T Consensus 263 iV~~dADl~~A~~~i 277 (481)
T cd07141 263 IVFADADLDYAVEQA 277 (481)
T ss_pred EECCCCCHHHHHHHH
Confidence 344446888887664
No 475
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.22 E-value=2.3e+02 Score=27.72 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=37.1
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhc
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAG 167 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~ls 167 (218)
+.-.+.|+++|++ .+|-+||..++|+. +.|.++.+.+-|.| .+|..+-..+.|..+++
T Consensus 8 ~~l~~~L~~~Gv~----~vFgipG~~~~~l~-~al~~~~~i~~i~~----------rhE~~A~~mAdgyar~t 65 (574)
T PRK06466 8 EMLVRALRDEGVE----YIYGYPGGAVLHIY-DALFKQDKVEHILV----------RHEQAATHMADGYARAT 65 (574)
T ss_pred HHHHHHHHHcCCC----EEEECCCcchhHHH-HHhhccCCceEEEe----------CcHHHHHHHHHHHHHHh
Confidence 5567889999997 79999999999985 44433333333322 34555555555555543
No 476
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=29.19 E-value=29 Score=34.13 Aligned_cols=61 Identities=30% Similarity=0.400 Sum_probs=39.4
Q ss_pred HHHHHHHHHHH----HHHHHHCCCCCCCe-EEEEeCCcchHHHHHHHhhh--------cCCccEEEEEeeeeeC
Q 027801 87 ELVTKLLLEGA----LETFKKYSVKEENI-DVVWVPGSFEIGVVAQQLGK--------SGKYTAVLCIGAVVRG 147 (218)
Q Consensus 87 ~~It~~Ll~gA----~~~L~~~Gv~~e~I-~vv~VPGA~ELP~aak~L~~--------~~~yDaVIaLG~VIrG 147 (218)
+.+++.+++.+ .+.|++.|+..++| .++-|=|+--+|.+-+.+.+ .-+.|-.||.||-+.|
T Consensus 297 e~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~a 370 (595)
T TIGR02350 297 EELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQG 370 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHH
Confidence 34444454544 56777888876666 56779999999999877643 1235555666666543
No 477
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=29.12 E-value=3.6e+02 Score=23.09 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=39.7
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..||++|.. +......+.++..+.++ |.- ..+...-+|..+.--.++++. ..+.|+|++.+.
T Consensus 134 ~~~v~il~~--~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~d~~~~i~~l~-~~~~d~i~~~~~ 195 (333)
T cd06332 134 YKKVVIIAP--DYAAGKDAVAGFKRTFK--GEV--VEEVYTPLGQLDFSAELAQIR-AAKPDAVFVFLP 195 (333)
T ss_pred CceEEEEec--CcchhHHHHHHHHHhhc--EEE--eeEEecCCCCcchHHHHHHHH-hcCCCEEEEecc
Confidence 468999974 44456677788888877 321 112333457677655677764 567999988653
No 478
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=29.12 E-value=1.4e+02 Score=27.22 Aligned_cols=87 Identities=18% Similarity=0.143 Sum_probs=43.1
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
+..+||||++.-...--..+++...+.|+++|-. ..++.|--... .+|+.-..+|++|.++|- | ..
T Consensus 208 ~a~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk---~y~~~~~~i~~-----~kL~nf~eid~fV~~aCP-r--~~--- 273 (307)
T PF01866_consen 208 DAKTFGIIVGTLGGQGYLELIKRLKKLLKKAGKK---SYTLSVGEINP-----AKLANFPEIDAFVQIACP-R--LS--- 273 (307)
T ss_dssp T--EEEEEEE-STTT--HHHHHHHHHHHHHTT-E---EEEEEESS--G-----GGGTTS---SEEEE-S-T-H--HH---
T ss_pred cCCEEEEEEecCCCCCCHHHHHHHHHHHHHcCCE---EEEEEECCCCH-----HHHhcCcccCEEEEecCC-C--cc---
Confidence 3468999999433322234556667788888864 44454433222 566666689999999996 1 11
Q ss_pred HHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH
Q 027801 154 AVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~ 188 (218)
.+=+.++.+|| ||+-..+-|+
T Consensus 274 ----------idd~~~f~kPv----ltP~E~~~al 294 (307)
T PF01866_consen 274 ----------IDDSKDFYKPV----LTPYELEVAL 294 (307)
T ss_dssp ----------HT--S--SS-E----E-HHHHHHHT
T ss_pred ----------cCchhhcCCcc----cCHHHHHHHh
Confidence 23367889998 6665555555
No 479
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=29.07 E-value=1.5e+02 Score=27.98 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=56.0
Q ss_pred HHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 99 ETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 99 ~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
+.|++.|+++.-+.+ |||.-| +.+.|..+.++|.|.-- |.+.-...|..++..-+..+.++.+=.--.-|
T Consensus 159 ~~~~~ag~P~gvv~~--v~g~~~---~~~~l~~~~~v~~V~fT-----Gs~~~g~~i~~~aa~~~~~~~lElGGk~~~iV 228 (443)
T cd07152 159 RLFEEAGLPAGVLHV--LPGGAD---AGEALVEDPNVAMISFT-----GSTAVGRKVGEAAGRHLKKVSLELGGKNALIV 228 (443)
T ss_pred HHHHHhCcCcCcEEE--ecCChH---HHHHHhcCCCCCEEEEE-----CCHHHHHHHHHHHHhcCCcEEEECCCCCeEEE
Confidence 567788888655554 467433 45677777889988644 56777788888888777777777553333334
Q ss_pred cCCCCHHHHHHhh
Q 027801 179 LTCDNMDQALNRA 191 (218)
Q Consensus 179 LT~~n~eQA~~Ra 191 (218)
+-..|.+.|.+++
T Consensus 229 ~~dAdl~~aa~~i 241 (443)
T cd07152 229 LDDADLDLAASNG 241 (443)
T ss_pred CCCCCHHHHHHHH
Confidence 5556888887763
No 480
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.03 E-value=2.4e+02 Score=27.93 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEE
Q 027801 94 LEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVL 139 (218)
Q Consensus 94 l~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVI 139 (218)
-+.-.+.|+++|++ .+|-+||..++|+. +.|.+..+.+-|.
T Consensus 14 a~~l~~~L~~~GV~----~vFGvpG~~~~~l~-dal~~~~~i~~I~ 54 (595)
T PRK09107 14 AEMVVQALKDQGVE----HIFGYPGGAVLPIY-DEIFQQDDIQHIL 54 (595)
T ss_pred HHHHHHHHHHCCCC----EEEEccCcchHHHH-HHHhhcCCCeEEE
Confidence 45667889999997 79999999999975 4443333344433
No 481
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=29.01 E-value=2e+02 Score=27.70 Aligned_cols=59 Identities=20% Similarity=0.377 Sum_probs=40.0
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCc----chHHHHHHHhhh----cCCccEEEEEeeeeeC--CchhHH
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGS----FEIGVVAQQLGK----SGKYTAVLCIGAVVRG--DTTHYD 153 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA----~ELP~aak~L~~----~~~yDaVIaLG~VIrG--eT~H~e 153 (218)
.-|.+-|+..|+...-+.++..|++ |++.-.++++.+ ....=-|-++|||+.| |.-|-|
T Consensus 243 ~V~~eILqslglR~~~v~~iaCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~Ad 311 (361)
T COG0821 243 KVAQEILQSLGLRSRGVEVIACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHAD 311 (361)
T ss_pred HHHHHHHHHhCccccCceEEECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccc
Confidence 4678888888888888888999986 566666655532 1222346678999854 555544
No 482
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=28.96 E-value=76 Score=23.20 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceE
Q 027801 96 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
|-.+.|+++|++.+ ..+..+.+ ..|-+.+ +++.+++|.||.+=-- .+... ..-...|.+..+++++|+.
T Consensus 21 gTa~~L~~~Gi~~~-~~~~ki~~--~~~~i~~-~i~~g~id~VIn~~~~-~~~~~------~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 21 GTAKFLREAGLPVK-TLHPKVHG--GILAILD-LIKNGEIDLVINTLYP-LGAQP------HEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHHHHCCCcce-eccCCCCC--CCHHHHH-HhcCCCeEEEEECCCc-Cccee------ccCcHHHHHHHHHcCCCee
Confidence 44567788887410 01111212 2465544 4578999999985210 01111 1224467889999999975
No 483
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=28.75 E-value=1.1e+02 Score=25.69 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=16.3
Q ss_pred CeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEee
Q 027801 110 NIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 110 ~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~ 143 (218)
.+....+|-+|+ ..-.+..+.+..+.|+||.+|.
T Consensus 35 ~i~~~~lpv~y~~~~~~~~~~~~~~~pd~vlhlG~ 69 (194)
T cd00501 35 EVVGLELPVVFQKAVEVLPELIEEHKPDLVIHVGL 69 (194)
T ss_pred EEEEEEcCccHHHHHHHHHHHHHHhCCCEEEEecc
Confidence 344555555554 2222333334445566666665
No 484
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.71 E-value=3.7e+02 Score=23.69 Aligned_cols=92 Identities=10% Similarity=0.113 Sum_probs=53.2
Q ss_pred CCCCEEEEEEcc------cCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEe
Q 027801 73 NEGLRFALVVAR------FNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 73 ~~~~RIaIV~Sr------fn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG 142 (218)
.+.+|||++... +.+... +-.+-+.++..+. |+.-..++++..--..+-.- ++++|++.+++++|| |
T Consensus 4 ~~~i~iG~~~~~sG~~a~~g~~~~-~g~~~a~~~~Na~gGi~G~~i~l~~~D~~~~~~~a~~~a~~li~~~~v~avv--G 80 (362)
T cd06343 4 DTEIKIGNTMPLSGPASAYGVIGR-TGAAYFFMINNDQGGINGRKIELIVEDDGYSPPKTVEQTRKLVESDEVFAMV--G 80 (362)
T ss_pred CceEEEeeccCCCCchhhhcHHHH-HHHHHHHHHHHhcCCcCCeEEEEEEecCCCChHHHHHHHHHHHhhcCeEEEE--e
Confidence 456788888743 333333 3334556666544 46555677777766665443 345666656666665 4
Q ss_pred eeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 143 AVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 143 ~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
.+ +...+..++++.-++++|++...
T Consensus 81 ~~-----------~s~~~~~~~~~~~~~~ip~i~~~ 105 (362)
T cd06343 81 GL-----------GTPTNLAVQKYLNEKKVPQLFPA 105 (362)
T ss_pred cC-----------CcHHHHHhHHHHHhcCCceEecc
Confidence 43 23334556666667788887753
No 485
>PRK06158 thiolase; Provisional
Probab=28.66 E-value=40 Score=31.47 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC
Q 027801 88 LVTKLLLEGALETFKKYSVKEENIDVVWVPG 118 (218)
Q Consensus 88 ~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG 118 (218)
...+-+.+.+.+.|++.|++.++||-+.+..
T Consensus 27 t~~eL~~eA~~~Al~dAgl~~~dID~iv~~~ 57 (384)
T PRK06158 27 SAMELLAQAAHRALADAGLTMADVDGLFTAS 57 (384)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCCEEEEec
Confidence 4556666666777777777666777665543
No 486
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=28.65 E-value=3.2e+02 Score=23.48 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=45.7
Q ss_pred CEEEEEEc--ccCHHHHHHHHHHHHHHHHH---C-CCCCCCeEEEEeCCcchH---HHHHHHhhhcCCccEEEEEeeeee
Q 027801 76 LRFALVVA--RFNELVTKLLLEGALETFKK---Y-SVKEENIDVVWVPGSFEI---GVVAQQLGKSGKYTAVLCIGAVVR 146 (218)
Q Consensus 76 ~RIaIV~S--rfn~~It~~Ll~gA~~~L~~---~-Gv~~e~I~vv~VPGA~EL---P~aak~L~~~~~yDaVIaLG~VIr 146 (218)
+|||++.. -....+...+..++.-.+++ . |+.-..|+++..-...+- --++++|.+..++++||.-
T Consensus 2 i~IG~~~~~sG~~a~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~l~~~~~v~~vvg~----- 76 (343)
T PF13458_consen 2 IKIGVLVPLSGPFAPYGQDFLRGAELAVDEINAAGGINGRKIELVVYDDGGDPAQAVQAARKLIDDDGVDAVVGP----- 76 (343)
T ss_dssp EEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEEE-TT-HHHHHHHHHHHHHTSTESEEEES-----
T ss_pred EEEEEEECCCChhhhhhHHHHHHHHHHHHHHHHhCCcCCccceeeeccCCCChHHHHHHHHHhhhhcCcEEEEec-----
Confidence 46666663 23445555555555544444 3 233345777766544432 3444666666667766542
Q ss_pred CCchhHHHHHHHHHHHHHHhchhcCCceEE
Q 027801 147 GDTTHYDAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 147 GeT~H~e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
++...+..+.+..-+.++|++.
T Consensus 77 --------~~s~~~~~~~~~~~~~~ip~i~ 98 (343)
T PF13458_consen 77 --------LSSAQAEAVAPIAEEAGIPYIS 98 (343)
T ss_dssp --------SSHHHHHHHHHHHHHHT-EEEE
T ss_pred --------CCcHHHHHHHHHHHhcCcEEEE
Confidence 1233445555666667888887
No 487
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=28.61 E-value=1.7e+02 Score=27.55 Aligned_cols=66 Identities=11% Similarity=-0.006 Sum_probs=43.3
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeE----EEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENID----VVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~----vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.-.||+||.. +.+.....++...+.+++.|.. .+. +...|+.-++--.++++.+..+.|+||..+-
T Consensus 171 ~w~~Vaii~~--~~~yg~~~~~~~~~~~~~~g~~--~v~~~~~i~~~~~~~d~~~~l~~ik~~~~~~vIvl~~~ 240 (463)
T cd06376 171 GWNYVSTLAS--EGNYGESGVEAFTQISREAGGV--CIAQSIKIPREPRPGEFDKIIKRLLETPNARAVIIFAN 240 (463)
T ss_pred CCeEEEEEEe--CChHHHHHHHHHHHHHHHcCCc--eEEEEEecCCCCCHHHHHHHHHHHhccCCCeEEEEecC
Confidence 3468999974 4556667777778888887531 121 1235677777777777754467898887664
No 488
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.39 E-value=2.8e+02 Score=24.23 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=44.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeE-EEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENID-VVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~-vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..||+|+.... ...+.+.+...+.|++.|+. -+. ...-|+.-+.=-.++++. ..+.|+|+..|.
T Consensus 135 ~~~v~ii~~~~--~~g~~~~~~~~~~~~~~g~~--v~~~~~~~~~~~d~~~~v~~l~-~~~~d~v~~~~~ 199 (340)
T cd06349 135 FKKVAILSVNT--DWGRTSADIFVKAAEKLGGQ--VVAHEEYVPGEKDFRPTITRLR-DANPDAIILISY 199 (340)
T ss_pred CcEEEEEecCC--hHhHHHHHHHHHHHHHcCCE--EEEEEEeCCCCCcHHHHHHHHH-hcCCCEEEEccc
Confidence 35899998765 35677888999999999985 222 223367666555666663 567899988875
No 489
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=28.39 E-value=35 Score=34.08 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCe-EEEEeCCcchHHHHHHHhhhc--------CCccEEEEEeeeee
Q 027801 89 VTKLLLEGALETFKKYSVKEENI-DVVWVPGSFEIGVVAQQLGKS--------GKYTAVLCIGAVVR 146 (218)
Q Consensus 89 It~~Ll~gA~~~L~~~Gv~~e~I-~vv~VPGA~ELP~aak~L~~~--------~~yDaVIaLG~VIr 146 (218)
+.+++.+-+.+.|++.|+..++| .++-|=|+--+|.+-+.+.+. -+.|-.||+||-|.
T Consensus 307 l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~ 373 (616)
T PRK05183 307 LVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQ 373 (616)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHH
Confidence 33444444567777888876665 577789999999987776431 23455555555443
No 490
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.22 E-value=2.8e+02 Score=25.29 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=57.0
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH----HHHHHHhhh---cCCccEEEEEeeeeeCC
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI----GVVAQQLGK---SGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL----P~aak~L~~---~~~yDaVIaLG~VIrGe 148 (218)
.|| .|.+-|-+++.+.+ ++-|+.+|+.-.++.-.-.++-.|+ |+++=+|++ .+++||+..= |. .
T Consensus 119 ~ri-~vlTPY~~evn~~e----~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFiS-CT---n 189 (238)
T COG3473 119 QRI-SVLTPYIDEVNQRE----IEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFIS-CT---N 189 (238)
T ss_pred ceE-EEeccchhhhhhHH----HHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeEEEE-ee---c
Confidence 355 56788888888776 5678888886444444556666665 777766654 5889999876 75 2
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEE
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
-.-|+ -+..+.-++|+||+.
T Consensus 190 lRt~e--------ii~~lE~~~G~PVvs 209 (238)
T COG3473 190 LRTFE--------IIEKLERDTGVPVVS 209 (238)
T ss_pred cccHH--------HHHHHHHHhCCceee
Confidence 33344 345677789999864
No 491
>PRK08309 short chain dehydrogenase; Provisional
Probab=28.20 E-value=3.5e+02 Score=22.55 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=46.1
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH-HH-HHHHhhhcCCcc-EEEEEeeeeeCCchhH--
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI-GV-VAQQLGKSGKYT-AVLCIGAVVRGDTTHY-- 152 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL-P~-aak~L~~~~~yD-aVIaLG~VIrGeT~H~-- 152 (218)
+-+++..-|....+++.+.|.+ .|+..+...++.+=|+--- |- -..++. ...+| -=|.||.|+.|++...
T Consensus 76 id~lv~~vh~~~~~~~~~~~~~----~gv~~~~~~~~h~~gs~~~~~~~~~~~~~-~~~~~~~~i~lgf~~~~~~~rwlt 150 (177)
T PRK08309 76 FDLAVAWIHSSAKDALSVVCRE----LDGSSETYRLFHVLGSAASDPRIPSEKIG-PARCSYRRVILGFVLEDTYSRWLT 150 (177)
T ss_pred CeEEEEeccccchhhHHHHHHH----HccCCCCceEEEEeCCcCCchhhhhhhhh-hcCCceEEEEEeEEEeCCccccCc
Confidence 3455555555555555444443 3666566667777676542 11 111111 12222 2367999999998643
Q ss_pred -HHHHHHHHHHH
Q 027801 153 -DAVANSAASGV 163 (218)
Q Consensus 153 -e~Va~~vs~gL 163 (218)
|-|++.|..++
T Consensus 151 ~~ei~~gv~~~~ 162 (177)
T PRK08309 151 HEEISDGVIKAI 162 (177)
T ss_pred hHHHHHHHHHHH
Confidence 55888888887
No 492
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=28.05 E-value=73 Score=27.10 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 90 TKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 90 t~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
...|++.|.+.+++.|+. +++++.-.+.... ...+.||.|++-+.+
T Consensus 110 ~~~~~~~a~~~l~~~g~~--~v~~~~gd~~~~~-------~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 110 IPELAEKAKKTLKKLGYD--NVEVIVGDGTLGY-------EENAPYDRIYVTAAG 155 (212)
T ss_pred CHHHHHHHHHHHHHcCCC--CeEEEECCcccCC-------CcCCCcCEEEECCCc
Confidence 356788899999998874 6777655543221 134689999986654
No 493
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=28.03 E-value=1.3e+02 Score=27.36 Aligned_cols=59 Identities=24% Similarity=0.248 Sum_probs=43.6
Q ss_pred EEEEEEcccCHHHHHH-------------HHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEE
Q 027801 77 RFALVVARFNELVTKL-------------LLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAV 138 (218)
Q Consensus 77 RIaIV~Srfn~~It~~-------------Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaV 138 (218)
+--++.+||-.+|+.+ -+-.|++.|+++||++++|..+. -|--|..+|...+.-.|=-|
T Consensus 175 ~akV~YArfppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~s---LF~tP~gak~i~~~fP~iti 246 (267)
T KOG1017|consen 175 EAKVLYARFPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVS---LFITPTGAKNITRKFPYITI 246 (267)
T ss_pred eeeEEEEecCCcccceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEEEEE---eeecchhhHHHHHhCCeEEE
Confidence 3446788888888764 34579999999999998887764 47789999988754444333
No 494
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=28.01 E-value=3e+02 Score=25.11 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=37.3
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC----cch-HHHHHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG----SFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG----A~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
.|+.||....-... ..+...+.|++.|+. +.++.--+ .++ +=-+++.+ +. ++|.||++| |.+.
T Consensus 25 ~kvlivtd~~~~~~---~~~~i~~~L~~~~~~---~~i~~~~~~~~p~~~~v~~~~~~~-~~-~~d~IIaiG----GGsv 92 (332)
T cd08549 25 SKIMIVCGNNTYKV---AGKEIIERLESNNFT---KEVLERDSLLIPDEYELGEVLIKL-DK-DTEFLLGIG----SGTI 92 (332)
T ss_pred CcEEEEECCcHHHH---HHHHHHHHHHHcCCe---EEEEecCCCCCCCHHHHHHHHHHh-hc-CCCEEEEEC----CcHH
Confidence 58888876544333 236677788888863 33322111 122 11233333 34 999999999 6666
Q ss_pred hH
Q 027801 151 HY 152 (218)
Q Consensus 151 H~ 152 (218)
.+
T Consensus 93 ~D 94 (332)
T cd08549 93 ID 94 (332)
T ss_pred HH
Confidence 55
No 495
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=27.88 E-value=1.5e+02 Score=26.23 Aligned_cols=96 Identities=11% Similarity=-0.002 Sum_probs=51.8
Q ss_pred CCCEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc----hHHHHHHHhhh-cCCccEEEEEeeeeeC
Q 027801 74 EGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF----EIGVVAQQLGK-SGKYTAVLCIGAVVRG 147 (218)
Q Consensus 74 ~~~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~----ELP~aak~L~~-~~~yDaVIaLG~VIrG 147 (218)
..+||++|...-. .-....|++.+.+.+.+.|+.-+.+++-.+|--. +.| .++.+.+ -...||+|..
T Consensus 25 ~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p-~v~~l~~~v~~ADgvii~------ 97 (219)
T TIGR02690 25 HIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHP-KVRELRQLSEWSEGQVWC------ 97 (219)
T ss_pred CCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCH-HHHHHHHHHHhCCEEEEe------
Confidence 4468888775433 4455566777777777667753333332334211 345 5555532 2457877642
Q ss_pred CchhHHHHHHHHHHHHHHhchh--------cCCceEEE
Q 027801 148 DTTHYDAVANSAASGVLSAGVN--------SGVPCIFG 177 (218)
Q Consensus 148 eT~H~e~Va~~vs~gLm~lsL~--------~~vPVifG 177 (218)
|+-|.+-.-.+.+-.+|.--. .++||.+.
T Consensus 98 -TPEYn~sipg~LKNaiDwls~~~~~~~~~~~Kpvaiv 134 (219)
T TIGR02690 98 -SPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVM 134 (219)
T ss_pred -CCccccCcCHHHHHHHHhcccCcccccccCCCcEEEE
Confidence 565555444444444443322 46777763
No 496
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A.
Probab=27.88 E-value=1.3e+02 Score=25.56 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=33.3
Q ss_pred CCCEEEE-EEcccCHHHHHHHHHHHHHHHHHCCCCC-CCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 74 EGLRFAL-VVARFNELVTKLLLEGALETFKKYSVKE-ENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 74 ~~~RIaI-V~Srfn~~It~~Ll~gA~~~L~~~Gv~~-e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
++.||++ ..+.-++.+ ....|+++|+++ +++.++.+|. |-+++.| +.++.|++++
T Consensus 120 kGk~i~~~~~gs~~~~~-------l~~~l~~~Gl~~~~dv~~~~~~~----~~~~~al-~~g~iDa~~~ 176 (252)
T PF13379_consen 120 KGKKIAVPFPGSTHDML-------LRYLLKKAGLDPKDDVTLVNVPP----PEMVAAL-RAGEIDAAVL 176 (252)
T ss_dssp STEEEEESSTTSHHHHH-------HHHHHHHTT--TTTSSEEEE--G----HHHHHHH-HTTS-SEEEE
T ss_pred CCcEEEEcCCCCHHHHH-------HHHHHHhCCCCcccceEEEecCH----HHHHHHH-hCCCcCEEEe
Confidence 6778877 333333332 334678899998 8999998887 4444444 6789999987
No 497
>TIGR02025 BchH magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring.
Probab=27.51 E-value=4.2e+02 Score=29.42 Aligned_cols=108 Identities=15% Similarity=0.120 Sum_probs=62.3
Q ss_pred CCCEEEEEEcccCHHH-HHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhc----CCccEEEE-EeeeeeC
Q 027801 74 EGLRFALVVARFNELV-TKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKS----GKYTAVLC-IGAVVRG 147 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~I-t~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~----~~yDaVIa-LG~VIrG 147 (218)
...+|||+.-|-+-.= -...++.-+++|++.|+. +.-+.+.|--..|.+-+.+... -..|+||. .|.-+-|
T Consensus 238 ~~p~Vgil~~r~~~~~~~~~~~dalI~~lE~~G~~---vipvf~~gl~~~~~v~~~~~~~~~~~~~vdaiI~~~gF~l~g 314 (1216)
T TIGR02025 238 KAPRVGLLLLRKHLLTGNQAHYDNLIRELEAAGLQ---VVPAFSGGLDGRVAVEDFFMKDSTPSVKVDAVVSLTGFSLVG 314 (1216)
T ss_pred CCCEEEEEEchhhhhcCCcHHHHHHHHHHHHCCCc---EEEEEecCccccHHHHHHHHhcccCCCCccEEEECCchhccC
Confidence 4678999987765311 235667778899999985 4555677744345543443321 16899995 4544433
Q ss_pred Cch-hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 148 DTT-HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 148 eT~-H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
... ... .....-|. +.|+||+.++.......+.|+++
T Consensus 315 gpa~~~~---~~a~~~L~----~lnVPvl~~~~l~~qt~~~W~~s 352 (1216)
T TIGR02025 315 GPAGSDA---AAAVEILK----GLDVPYIVAIPLLFQTIESWTAS 352 (1216)
T ss_pred CCccccc---hhhHHHHH----HCCCCEEEEEecCCCCHHHHHhC
Confidence 221 110 11122222 45999999997653344556664
No 498
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=27.33 E-value=58 Score=32.81 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCe-EEEEeCCcchHHHHHHHhhh---------cCCccEEEEEeeeeeC
Q 027801 91 KLLLEGALETFKKYSVKEENI-DVVWVPGSFEIGVVAQQLGK---------SGKYTAVLCIGAVVRG 147 (218)
Q Consensus 91 ~~Ll~gA~~~L~~~Gv~~e~I-~vv~VPGA~ELP~aak~L~~---------~~~yDaVIaLG~VIrG 147 (218)
++.++-+.+.|++.|+..++| .|+-|=|+-.+|.+-+.+.+ +-+.|-.||+||-+.+
T Consensus 313 ~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~a 379 (653)
T PTZ00009 313 RNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQA 379 (653)
T ss_pred HHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhH
Confidence 334445566777788776665 45678999999999776632 2356888888887754
No 499
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=27.32 E-value=3e+02 Score=25.91 Aligned_cols=84 Identities=19% Similarity=0.147 Sum_probs=47.9
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
.+.|++.|+++.-+.++ ||.-| +.+.|+++.+.|.|.- .|.+..-+.|.......+..+.++.+=.--.-
T Consensus 163 ~~~l~~aGlP~g~~~~v--~g~~~---~~~~L~~~~~v~~V~f-----TGs~~~g~~v~~~a~~~~~~v~lelgG~~~~i 232 (452)
T cd07102 163 AAAFAEAGLPEGVFQVL--HLSHE---TSAALIADPRIDHVSF-----TGSVAGGRAIQRAAAGRFIKVGLELGGKDPAY 232 (452)
T ss_pred HHHHHhcCCCcCcEEEE--eCCch---hHHHHhcCCCCCEEEE-----ECcHHHHHHHHHHHHhcCCcEEEECCCCCceE
Confidence 45566677765555554 44223 4466666667777654 45566667777776655555555533222233
Q ss_pred EcCCCCHHHHHHhh
Q 027801 178 VLTCDNMDQALNRA 191 (218)
Q Consensus 178 VLT~~n~eQA~~Ra 191 (218)
|.-.-|.+.|.+++
T Consensus 233 V~~dADl~~aa~~i 246 (452)
T cd07102 233 VRPDADLDAAAESL 246 (452)
T ss_pred EcCCCCHHHHHHHH
Confidence 44456777775553
No 500
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=27.28 E-value=4e+02 Score=22.87 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=34.8
Q ss_pred HHHHHHHHC-CCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcC
Q 027801 96 GALETFKKY-SVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSG 171 (218)
Q Consensus 96 gA~~~L~~~-Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~ 171 (218)
-|.+++.+. |+...+++++..-...+-.- ++++|++. ++++|| |+. .+. .+..+.++.-+.+
T Consensus 25 ~a~~~iN~~ggi~g~~i~~~~~D~~~~~~~~~~~~~~li~~-~v~aii--G~~---~s~--------~~~~~~~~~~~~~ 90 (334)
T cd06342 25 LAVEDINAKGGGKGVKLELVVEDDQADPKQAVAVAQKLVDD-GVVGVV--GHL---NSG--------VTIPASPIYADAG 90 (334)
T ss_pred HHHHHHHhcCCCCCeEEEEEEecCCCChHHHHHHHHHHHhC-CceEEE--CCC---ccH--------hHHHhHHHHHhCC
Confidence 444555544 34445677777766665443 34456555 555544 543 111 1222333444567
Q ss_pred CceEEEE
Q 027801 172 VPCIFGV 178 (218)
Q Consensus 172 vPVifGV 178 (218)
+|++...
T Consensus 91 ip~i~~~ 97 (334)
T cd06342 91 IVMISPA 97 (334)
T ss_pred CeEEecC
Confidence 7777543
Done!