Query 027801
Match_columns 218
No_of_seqs 159 out of 1090
Neff 4.5
Searched_HMMs 29240
Date Tue Mar 26 02:26:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nq4_A 6,7-dimethyl-8-ribityll 100.0 1.9E-61 6.5E-66 401.0 18.5 152 63-215 1-153 (156)
2 1c2y_A Protein (lumazine synth 100.0 1E-60 3.6E-65 396.6 17.2 153 64-217 2-154 (156)
3 1hqk_A 6,7-dimethyl-8-ribityll 100.0 2.1E-60 7.1E-65 393.9 16.8 151 64-215 2-152 (154)
4 1rvv_A Riboflavin synthase; tr 100.0 2.1E-60 7.1E-65 394.0 16.5 151 64-215 2-152 (154)
5 1kz1_A 6,7-dimethyl-8-ribityll 100.0 5.5E-59 1.9E-63 387.3 17.6 146 68-214 11-158 (159)
6 2i0f_A 6,7-dimethyl-8-ribityll 100.0 2.9E-58 1E-62 382.1 18.6 138 75-215 12-154 (157)
7 1ejb_A Lumazine synthase; anal 100.0 3.5E-58 1.2E-62 385.3 17.1 144 72-215 13-165 (168)
8 2obx_A DMRL synthase 1, 6,7-di 100.0 2.1E-58 7.2E-63 382.9 10.6 145 71-215 7-154 (157)
9 1di0_A Lumazine synthase; tran 100.0 2.5E-58 8.4E-63 382.8 10.2 144 72-215 7-153 (158)
10 2c92_A 6,7-dimethyl-8-ribityll 100.0 3.2E-56 1.1E-60 370.9 18.3 140 72-215 14-155 (160)
11 1c41_A Lumazine synthase; ribo 100.0 5.5E-57 1.9E-61 386.7 0.0 145 72-216 12-194 (200)
12 2b99_A Riboflavin synthase; lu 100.0 4.4E-50 1.5E-54 332.9 7.5 132 76-215 3-135 (156)
13 3e61_A Putative transcriptiona 96.2 0.028 9.6E-07 45.9 9.4 67 73-142 6-72 (277)
14 3jy6_A Transcriptional regulat 96.0 0.068 2.3E-06 43.8 10.8 69 73-144 5-73 (276)
15 3l6u_A ABC-type sugar transpor 95.9 0.055 1.9E-06 44.4 9.9 67 73-143 6-73 (293)
16 3l49_A ABC sugar (ribose) tran 95.8 0.072 2.5E-06 43.6 10.3 67 73-143 3-70 (291)
17 3hs3_A Ribose operon repressor 95.7 0.026 9E-07 46.5 7.3 67 73-142 8-75 (277)
18 3lft_A Uncharacterized protein 95.7 0.13 4.5E-06 42.9 11.4 97 61-175 121-217 (295)
19 3lkv_A Uncharacterized conserv 95.5 0.21 7E-06 42.6 12.4 90 73-180 6-99 (302)
20 2qh8_A Uncharacterized protein 95.4 0.12 4E-06 43.5 10.2 124 62-210 129-258 (302)
21 3jvd_A Transcriptional regulat 95.4 0.04 1.4E-06 47.1 7.4 67 73-143 62-128 (333)
22 3tb6_A Arabinose metabolism tr 95.1 0.12 4E-06 42.2 9.2 66 75-143 15-80 (298)
23 3egc_A Putative ribose operon 95.0 0.097 3.3E-06 43.0 8.5 69 73-144 6-74 (291)
24 3h75_A Periplasmic sugar-bindi 94.9 0.17 5.7E-06 43.1 9.9 87 75-177 3-92 (350)
25 3uug_A Multiple sugar-binding 94.9 0.094 3.2E-06 43.8 8.0 66 74-143 2-68 (330)
26 2qh8_A Uncharacterized protein 94.8 0.22 7.4E-06 41.8 10.2 89 73-179 6-98 (302)
27 3k4h_A Putative transcriptiona 94.8 0.056 1.9E-06 44.3 6.3 68 73-143 6-78 (292)
28 3ksm_A ABC-type sugar transpor 94.7 0.075 2.6E-06 42.9 6.7 65 76-143 1-68 (276)
29 3lft_A Uncharacterized protein 94.4 0.36 1.2E-05 40.2 10.6 84 76-177 3-89 (295)
30 3o74_A Fructose transport syst 94.4 0.18 6.1E-06 40.7 8.4 67 75-144 2-68 (272)
31 3rot_A ABC sugar transporter, 94.4 0.21 7.2E-06 41.3 9.0 65 75-143 3-70 (297)
32 3g85_A Transcriptional regulat 94.3 0.066 2.3E-06 43.9 5.6 68 73-143 9-77 (289)
33 3kke_A LACI family transcripti 94.2 0.14 4.8E-06 42.7 7.6 68 73-143 13-80 (303)
34 3gbv_A Putative LACI-family tr 94.0 0.35 1.2E-05 39.5 9.5 67 73-143 6-78 (304)
35 3o1i_D Periplasmic protein TOR 93.8 0.15 5.3E-06 41.8 7.0 68 73-144 3-73 (304)
36 3k9c_A Transcriptional regulat 93.8 0.24 8.3E-06 40.9 8.2 67 73-144 10-76 (289)
37 8abp_A L-arabinose-binding pro 93.7 0.19 6.5E-06 41.4 7.4 64 75-143 2-66 (306)
38 3gv0_A Transcriptional regulat 93.5 0.091 3.1E-06 43.4 5.1 68 73-143 6-75 (288)
39 3huu_A Transcription regulator 93.5 0.13 4.4E-06 42.8 6.0 69 73-144 20-93 (305)
40 3h5o_A Transcriptional regulat 93.4 0.37 1.3E-05 40.9 8.9 68 73-143 60-127 (339)
41 3c3k_A Alanine racemase; struc 93.3 0.33 1.1E-05 39.9 8.2 67 73-143 6-73 (285)
42 3miz_A Putative transcriptiona 93.3 0.17 5.7E-06 41.9 6.4 69 73-144 11-80 (301)
43 3qk7_A Transcriptional regulat 93.1 0.23 7.9E-06 41.1 7.0 68 73-144 4-75 (294)
44 3g1w_A Sugar ABC transporter; 92.7 0.28 9.7E-06 40.4 7.0 65 74-143 3-70 (305)
45 3gyb_A Transcriptional regulat 92.7 0.12 4.1E-06 42.1 4.6 65 73-143 3-68 (280)
46 3hs3_A Ribose operon repressor 92.7 1.4 4.7E-05 36.1 11.0 97 74-186 121-218 (277)
47 3hcw_A Maltose operon transcri 92.6 0.23 7.8E-06 41.2 6.3 68 73-143 5-77 (295)
48 3m9w_A D-xylose-binding peripl 92.5 0.27 9.3E-06 40.9 6.7 65 75-143 2-67 (313)
49 1byk_A Protein (trehalose oper 92.5 0.6 2.1E-05 37.4 8.5 65 75-143 2-67 (255)
50 2rgy_A Transcriptional regulat 92.5 0.35 1.2E-05 39.8 7.2 67 73-143 6-76 (290)
51 2iks_A DNA-binding transcripti 92.4 0.58 2E-05 38.5 8.5 67 73-143 18-85 (293)
52 2fep_A Catabolite control prot 92.4 0.54 1.8E-05 38.8 8.3 67 73-143 14-81 (289)
53 3k4h_A Putative transcriptiona 92.4 1.2 4.1E-05 36.2 10.3 85 75-169 131-217 (292)
54 3brq_A HTH-type transcriptiona 92.3 0.41 1.4E-05 38.9 7.4 67 73-143 17-86 (296)
55 1dbq_A Purine repressor; trans 92.2 0.52 1.8E-05 38.4 7.9 67 73-143 5-72 (289)
56 3d8u_A PURR transcriptional re 92.2 0.38 1.3E-05 38.9 7.0 65 75-143 3-68 (275)
57 3qk7_A Transcriptional regulat 92.1 1.6 5.6E-05 35.9 10.9 125 74-210 125-258 (294)
58 2x7x_A Sensor protein; transfe 92.0 1.2 4E-05 37.5 10.1 66 73-143 4-71 (325)
59 3e61_A Putative transcriptiona 91.9 0.84 2.9E-05 37.0 8.8 98 74-187 121-218 (277)
60 3dbi_A Sugar-binding transcrip 91.7 0.63 2.2E-05 39.3 8.1 67 73-143 59-128 (338)
61 3hcw_A Maltose operon transcri 91.6 1.5 5.2E-05 36.2 10.2 123 74-211 130-263 (295)
62 2fn9_A Ribose ABC transporter, 91.5 0.76 2.6E-05 37.5 8.1 64 76-143 3-67 (290)
63 2o20_A Catabolite control prot 91.4 0.79 2.7E-05 38.7 8.4 67 73-143 61-128 (332)
64 3g85_A Transcriptional regulat 91.4 1.3 4.5E-05 36.0 9.5 103 74-188 126-232 (289)
65 2ioy_A Periplasmic sugar-bindi 91.3 1.1 3.7E-05 36.7 9.0 64 76-143 2-66 (283)
66 3e3m_A Transcriptional regulat 91.0 0.84 2.9E-05 39.0 8.2 67 73-143 68-135 (355)
67 3rot_A ABC sugar transporter, 90.9 2.9 0.0001 34.3 11.2 95 75-188 130-231 (297)
68 3tb6_A Arabinose metabolism tr 90.8 1.7 5.9E-05 35.2 9.6 101 74-187 136-242 (298)
69 3bil_A Probable LACI-family tr 90.8 0.69 2.3E-05 39.6 7.5 67 73-143 64-131 (348)
70 2fqx_A Membrane lipoprotein TM 90.8 0.97 3.3E-05 38.7 8.4 66 74-143 3-71 (318)
71 3ctp_A Periplasmic binding pro 90.8 1.1 3.8E-05 37.7 8.7 66 73-143 58-124 (330)
72 3clk_A Transcription regulator 90.7 0.39 1.3E-05 39.5 5.6 67 73-143 6-74 (290)
73 3bbl_A Regulatory protein of L 90.7 2 6.9E-05 35.1 10.0 83 75-169 125-213 (287)
74 3kjx_A Transcriptional regulat 90.6 0.73 2.5E-05 39.1 7.4 67 73-143 66-133 (344)
75 3d8u_A PURR transcriptional re 90.5 2.1 7.2E-05 34.4 9.8 99 75-187 120-222 (275)
76 3egc_A Putative ribose operon 90.5 1.6 5.5E-05 35.6 9.2 99 74-186 124-226 (291)
77 2rgy_A Transcriptional regulat 90.5 1.8 6.3E-05 35.4 9.6 83 75-169 128-214 (290)
78 2qu7_A Putative transcriptiona 90.4 2.3 7.8E-05 34.6 10.1 84 75-169 122-212 (288)
79 3d02_A Putative LACI-type tran 90.4 1.4 4.8E-05 36.0 8.8 64 74-143 3-70 (303)
80 2rjo_A Twin-arginine transloca 90.0 0.95 3.3E-05 38.1 7.6 68 73-143 3-72 (332)
81 2vk2_A YTFQ, ABC transporter p 89.9 0.81 2.8E-05 37.9 7.0 65 75-143 2-67 (306)
82 2qu7_A Putative transcriptiona 89.9 0.68 2.3E-05 37.8 6.4 66 73-143 6-72 (288)
83 3kke_A LACI family transcripti 89.8 2.5 8.6E-05 34.9 10.0 102 74-187 130-238 (303)
84 1qpz_A PURA, protein (purine n 89.7 1.5 5E-05 37.1 8.6 67 73-143 56-123 (340)
85 2fvy_A D-galactose-binding per 89.7 3 0.0001 34.0 10.2 96 75-188 140-242 (309)
86 2fvy_A D-galactose-binding per 89.6 1.1 3.9E-05 36.6 7.5 64 76-143 3-68 (309)
87 3gbv_A Putative LACI-family tr 89.5 1.9 6.6E-05 35.0 8.9 88 74-173 134-227 (304)
88 3huu_A Transcription regulator 89.5 1.6 5.5E-05 36.1 8.5 98 74-187 143-243 (305)
89 3dbi_A Sugar-binding transcrip 89.4 2.3 7.7E-05 35.8 9.5 84 74-169 180-267 (338)
90 3miz_A Putative transcriptiona 89.2 1.3 4.3E-05 36.6 7.6 100 74-185 130-236 (301)
91 2hsg_A Glucose-resistance amyl 89.1 0.63 2.2E-05 39.2 5.8 67 73-143 58-125 (332)
92 3jvd_A Transcriptional regulat 89.1 4.5 0.00015 34.2 11.2 95 74-186 173-271 (333)
93 3brs_A Periplasmic binding pro 88.9 0.77 2.6E-05 37.3 6.0 67 73-143 3-74 (289)
94 2iks_A DNA-binding transcripti 88.7 3.3 0.00011 33.8 9.8 82 74-169 137-222 (293)
95 3gv0_A Transcriptional regulat 88.6 1.2 4.1E-05 36.5 7.1 84 74-169 126-213 (288)
96 3snr_A Extracellular ligand-bi 88.5 3.6 0.00012 34.1 10.0 93 74-183 134-227 (362)
97 2dri_A D-ribose-binding protei 88.3 1.7 5.9E-05 35.2 7.8 63 76-142 2-65 (271)
98 2o20_A Catabolite control prot 88.2 2.7 9.4E-05 35.3 9.2 98 75-187 180-280 (332)
99 1pea_A Amidase operon; gene re 88.1 3.9 0.00013 34.9 10.2 87 75-175 140-230 (385)
100 2fep_A Catabolite control prot 88.0 2.9 0.0001 34.3 9.1 83 75-169 133-220 (289)
101 3h75_A Periplasmic sugar-bindi 87.8 4.9 0.00017 33.9 10.6 122 74-210 144-277 (350)
102 1qpz_A PURA, protein (purine n 87.7 2.5 8.6E-05 35.7 8.7 83 75-169 177-263 (340)
103 3gyb_A Transcriptional regulat 87.6 3.3 0.00011 33.4 9.0 96 74-186 117-216 (280)
104 2vk2_A YTFQ, ABC transporter p 87.5 4 0.00014 33.7 9.7 121 75-211 128-264 (306)
105 3brq_A HTH-type transcriptiona 87.5 2.4 8.1E-05 34.3 8.1 83 75-169 139-225 (296)
106 3g1w_A Sugar ABC transporter; 87.1 3.4 0.00012 33.8 8.9 96 74-187 126-226 (305)
107 3c3k_A Alanine racemase; struc 87.1 5.3 0.00018 32.5 10.1 98 75-187 124-225 (285)
108 4fe7_A Xylose operon regulator 87.0 1.4 4.8E-05 38.8 6.9 60 73-140 23-82 (412)
109 3l6u_A ABC-type sugar transpor 87.0 3.9 0.00013 33.1 9.2 94 76-188 136-234 (293)
110 3l49_A ABC sugar (ribose) tran 86.7 2.4 8.4E-05 34.3 7.8 99 74-189 124-231 (291)
111 2dri_A D-ribose-binding protei 86.7 6.8 0.00023 31.6 10.5 95 75-188 123-221 (271)
112 3k9c_A Transcriptional regulat 86.5 3.9 0.00013 33.5 8.9 82 74-169 125-210 (289)
113 3bbl_A Regulatory protein of L 86.4 0.57 1.9E-05 38.5 3.8 65 74-143 3-73 (287)
114 3clk_A Transcription regulator 86.3 2.6 8.9E-05 34.4 7.8 83 75-169 125-210 (290)
115 2h0a_A TTHA0807, transcription 86.2 3.6 0.00012 33.0 8.5 100 75-186 114-220 (276)
116 1gud_A ALBP, D-allose-binding 86.2 2.9 9.8E-05 34.3 8.0 64 76-143 2-68 (288)
117 3brs_A Periplasmic binding pro 85.7 5.9 0.0002 32.0 9.6 86 75-174 131-220 (289)
118 1dbq_A Purine repressor; trans 85.7 2.2 7.4E-05 34.6 6.9 83 75-169 126-212 (289)
119 2hsg_A Glucose-resistance amyl 85.7 3.5 0.00012 34.5 8.4 84 74-169 176-264 (332)
120 3cs3_A Sugar-binding transcrip 85.6 0.75 2.6E-05 37.5 4.1 61 73-143 6-66 (277)
121 1gud_A ALBP, D-allose-binding 85.6 6 0.00021 32.4 9.7 96 75-188 133-233 (288)
122 1jye_A Lactose operon represso 85.4 3.2 0.00011 35.3 8.2 67 73-143 59-127 (349)
123 4evq_A Putative ABC transporte 85.3 3.7 0.00013 34.4 8.4 87 74-176 150-237 (375)
124 3h5t_A Transcriptional regulat 85.1 2.3 7.9E-05 36.3 7.1 65 73-143 66-137 (366)
125 3h5o_A Transcriptional regulat 85.0 7 0.00024 32.8 10.0 100 74-187 177-280 (339)
126 2h0a_A TTHA0807, transcription 85.0 0.73 2.5E-05 37.2 3.7 62 77-143 1-64 (276)
127 1jye_A Lactose operon represso 84.9 9.9 0.00034 32.2 11.0 97 75-187 179-279 (349)
128 3kjx_A Transcriptional regulat 84.9 4.1 0.00014 34.4 8.6 98 75-186 185-287 (344)
129 2ioy_A Periplasmic sugar-bindi 84.6 6.3 0.00021 32.1 9.3 95 75-188 123-222 (283)
130 3cs3_A Sugar-binding transcrip 84.4 4.2 0.00015 32.9 8.2 96 75-187 118-218 (277)
131 3o74_A Fructose transport syst 84.3 1.8 6.1E-05 34.7 5.8 95 74-185 119-218 (272)
132 3iwt_A 178AA long hypothetical 84.2 3.8 0.00013 32.6 7.6 82 74-160 14-104 (178)
133 3o1i_D Periplasmic protein TOR 84.0 1.2 4.2E-05 36.3 4.7 88 75-178 136-226 (304)
134 4eyg_A Twin-arginine transloca 83.7 7.8 0.00027 32.3 9.7 89 74-176 138-228 (368)
135 3e3m_A Transcriptional regulat 83.0 6 0.00021 33.6 8.9 101 74-187 186-291 (355)
136 3ipc_A ABC transporter, substr 82.9 12 0.0004 31.2 10.5 85 75-175 138-223 (356)
137 2h3h_A Sugar ABC transporter, 82.0 11 0.00037 31.1 9.9 96 74-187 122-221 (313)
138 3hut_A Putative branched-chain 81.9 7.9 0.00027 32.3 9.0 86 74-175 138-224 (358)
139 3lop_A Substrate binding perip 81.8 16 0.00053 30.7 10.9 86 74-174 140-225 (364)
140 3ctp_A Periplasmic binding pro 81.5 3.1 0.0001 35.0 6.4 121 75-211 172-302 (330)
141 3lkv_A Uncharacterized conserv 81.5 16 0.00055 30.7 11.0 114 74-210 139-258 (302)
142 2rjo_A Twin-arginine transloca 81.2 8.3 0.00028 32.2 9.0 96 75-188 136-237 (332)
143 2h3h_A Sugar ABC transporter, 81.2 3.9 0.00013 33.9 6.8 62 76-143 2-66 (313)
144 1jx6_A LUXP protein; protein-l 81.0 8.5 0.00029 32.1 8.9 92 75-185 175-270 (342)
145 3m9w_A D-xylose-binding peripl 81.0 9 0.00031 31.5 9.0 99 76-189 124-229 (313)
146 2fp4_B Succinyl-COA ligase [GD 80.7 20 0.00068 32.7 11.9 120 77-210 265-392 (395)
147 2pjk_A 178AA long hypothetical 80.4 5.5 0.00019 32.3 7.4 100 73-179 13-142 (178)
148 3bil_A Probable LACI-family tr 80.2 11 0.00039 31.9 9.6 80 75-169 184-266 (348)
149 2nu8_B SCS-beta, succinyl-COA 80.2 8.4 0.00029 34.9 9.3 121 77-210 258-385 (388)
150 1tjy_A Sugar transport protein 80.1 5.8 0.0002 33.2 7.6 64 74-143 2-69 (316)
151 3ksm_A ABC-type sugar transpor 79.2 6.7 0.00023 31.2 7.4 96 74-187 126-226 (276)
152 3h5t_A Transcriptional regulat 79.2 7.7 0.00026 33.0 8.2 123 74-210 188-336 (366)
153 2pbq_A Molybdenum cofactor bio 77.7 9.1 0.00031 30.8 7.8 94 74-174 4-115 (178)
154 4eyg_A Twin-arginine transloca 77.7 13 0.00044 31.0 9.1 92 73-177 4-102 (368)
155 2hqb_A Transcriptional activat 77.1 3.2 0.00011 34.9 5.1 65 73-142 3-71 (296)
156 3qvl_A Putative hydantoin race 77.0 4.1 0.00014 34.6 5.8 100 75-195 109-221 (245)
157 3okf_A 3-dehydroquinate syntha 77.0 12 0.0004 34.3 9.2 63 74-143 61-132 (390)
158 1jx6_A LUXP protein; protein-l 76.5 9.9 0.00034 31.7 8.0 64 73-140 41-110 (342)
159 1usg_A Leucine-specific bindin 76.0 9.9 0.00034 31.3 7.8 85 75-175 138-223 (346)
160 2x7x_A Sensor protein; transfe 75.6 15 0.0005 30.7 8.8 119 75-211 128-261 (325)
161 2csu_A 457AA long hypothetical 75.6 15 0.00052 33.8 9.6 86 124-212 358-447 (457)
162 3td9_A Branched chain amino ac 75.3 15 0.00052 30.7 8.8 86 75-175 149-234 (366)
163 2fn9_A Ribose ABC transporter, 75.2 20 0.00068 28.9 9.3 95 75-188 129-230 (290)
164 3d02_A Putative LACI-type tran 73.9 12 0.00043 30.2 7.8 93 76-185 128-226 (303)
165 1byk_A Protein (trehalose oper 73.0 13 0.00043 29.5 7.5 92 75-187 115-210 (255)
166 4grd_A N5-CAIR mutase, phospho 72.4 17 0.00058 30.3 8.2 122 73-215 10-147 (173)
167 3rpe_A MDAB, modulator of drug 71.7 11 0.00038 31.7 7.1 63 76-144 26-93 (218)
168 3lkb_A Probable branched-chain 70.9 13 0.00045 31.5 7.5 86 75-176 143-229 (392)
169 3ufx_B Succinyl-COA synthetase 70.9 14 0.00047 33.7 8.1 122 76-211 248-375 (397)
170 8abp_A L-arabinose-binding pro 70.9 23 0.0008 28.6 8.8 82 76-169 133-222 (306)
171 4evq_A Putative ABC transporte 70.6 17 0.00058 30.3 8.0 92 73-177 14-112 (375)
172 1tq8_A Hypothetical protein RV 70.6 24 0.00082 26.8 8.3 77 90-176 79-155 (163)
173 1tjy_A Sugar transport protein 70.0 28 0.00094 28.9 9.2 98 75-190 128-230 (316)
174 3lkb_A Probable branched-chain 69.6 31 0.001 29.2 9.5 91 73-177 5-104 (392)
175 3ors_A N5-carboxyaminoimidazol 68.6 23 0.00079 29.1 8.2 121 75-216 3-139 (163)
176 3ox4_A Alcohol dehydrogenase 2 68.4 11 0.00038 33.7 6.8 68 75-152 31-102 (383)
177 4b4k_A N5-carboxyaminoimidazol 68.1 18 0.00062 30.3 7.5 127 68-215 13-157 (181)
178 3trh_A Phosphoribosylaminoimid 68.0 22 0.00077 29.4 8.0 121 75-216 6-142 (169)
179 3i09_A Periplasmic branched-ch 67.9 18 0.00061 30.4 7.6 82 74-169 139-221 (375)
180 3sg0_A Extracellular ligand-bi 67.9 12 0.00039 31.3 6.4 86 74-174 158-243 (386)
181 1pea_A Amidase operon; gene re 67.9 43 0.0015 28.3 10.1 91 73-176 5-104 (385)
182 3i45_A Twin-arginine transloca 67.8 27 0.00092 29.6 8.8 88 74-175 141-231 (387)
183 3lp6_A Phosphoribosylaminoimid 66.9 17 0.00059 30.2 7.1 123 73-216 5-141 (174)
184 3hut_A Putative branched-chain 66.4 50 0.0017 27.3 10.0 91 74-177 3-102 (358)
185 2bon_A Lipid kinase; DAG kinas 65.9 43 0.0015 29.0 9.9 84 76-174 30-113 (332)
186 1y5e_A Molybdenum cofactor bio 65.8 10 0.00035 30.2 5.4 98 74-176 12-124 (169)
187 1usg_A Leucine-specific bindin 65.8 47 0.0016 27.2 9.7 89 75-177 2-99 (346)
188 3kuu_A Phosphoribosylaminoimid 64.9 26 0.00088 29.2 7.8 121 75-216 12-148 (174)
189 3eaf_A ABC transporter, substr 64.6 6.8 0.00023 33.5 4.4 86 75-175 141-229 (391)
190 1sg6_A Pentafunctional AROM po 64.5 30 0.001 31.0 8.9 62 76-143 37-114 (393)
191 3ce9_A Glycerol dehydrogenase; 64.1 15 0.0005 32.2 6.6 60 76-142 35-96 (354)
192 2a5l_A Trp repressor binding p 63.8 11 0.00038 29.2 5.2 40 76-119 6-45 (200)
193 2fqx_A Membrane lipoprotein TM 63.4 35 0.0012 28.9 8.6 79 76-169 130-213 (318)
194 1q7r_A Predicted amidotransfer 63.4 21 0.00072 29.0 7.0 80 73-178 21-100 (219)
195 3qbe_A 3-dehydroquinate syntha 61.5 29 0.00098 31.4 8.1 61 76-143 44-112 (368)
196 3rg8_A Phosphoribosylaminoimid 61.3 29 0.001 28.4 7.4 119 76-216 3-134 (159)
197 1mkz_A Molybdenum cofactor bio 60.9 16 0.00056 29.1 5.8 97 74-175 9-119 (172)
198 3n0w_A ABC branched chain amin 60.6 16 0.00054 30.9 6.0 65 74-143 141-206 (379)
199 2pju_A Propionate catabolism o 60.4 22 0.00076 30.0 6.8 91 76-194 13-105 (225)
200 2vdj_A Homoserine O-succinyltr 60.2 22 0.00074 31.4 7.0 110 72-193 32-154 (301)
201 3hgm_A Universal stress protei 59.6 32 0.0011 24.7 6.8 80 88-175 66-145 (147)
202 1ofu_X SULA, hypothetical prot 59.5 13 0.00045 28.5 4.8 58 74-140 32-89 (119)
203 3td9_A Branched chain amino ac 59.3 72 0.0025 26.5 9.8 92 74-178 15-112 (366)
204 1xmp_A PURE, phosphoribosylami 58.5 39 0.0013 28.0 7.8 120 75-215 11-146 (170)
205 1jq5_A Glycerol dehydrogenase; 57.8 38 0.0013 29.7 8.1 61 76-143 32-95 (370)
206 4h62_V Mediator of RNA polymer 57.1 9.2 0.00031 23.1 2.7 22 82-103 6-27 (31)
207 1u11_A PURE (N5-carboxyaminoim 55.9 46 0.0016 27.8 7.8 121 75-216 21-157 (182)
208 1wv2_A Thiazole moeity, thiazo 53.8 20 0.00068 31.7 5.5 79 96-190 126-208 (265)
209 1f6k_A N-acetylneuraminate lya 53.1 24 0.00082 30.4 5.9 70 118-191 19-92 (293)
210 3fni_A Putative diflavin flavo 52.5 77 0.0026 24.4 9.3 90 75-177 4-94 (159)
211 2i2c_A Probable inorganic poly 52.1 18 0.00062 30.7 5.0 44 76-143 1-44 (272)
212 3lop_A Substrate binding perip 52.1 1E+02 0.0035 25.6 10.0 92 73-177 3-105 (364)
213 3uhj_A Probable glycerol dehyd 51.6 25 0.00085 31.7 6.0 60 76-142 53-114 (387)
214 3oow_A Phosphoribosylaminoimid 51.4 58 0.002 26.8 7.6 120 76-216 6-141 (166)
215 3kkl_A Probable chaperone prot 51.0 30 0.001 29.1 6.1 92 76-176 4-136 (244)
216 2ywx_A Phosphoribosylaminoimid 50.5 61 0.0021 26.4 7.6 116 78-215 2-128 (157)
217 4f06_A Extracellular ligand-bi 50.4 85 0.0029 26.5 8.9 94 72-178 2-103 (371)
218 3b6i_A Flavoprotein WRBA; flav 50.3 34 0.0012 26.3 6.0 40 76-119 2-42 (198)
219 3sm9_A Mglur3, metabotropic gl 50.0 32 0.0011 31.0 6.5 65 75-143 185-252 (479)
220 2is8_A Molybdopterin biosynthe 49.8 21 0.00072 28.1 4.7 59 98-161 27-86 (164)
221 2qv7_A Diacylglycerol kinase D 49.4 45 0.0016 28.7 7.2 84 77-175 26-110 (337)
222 3ksx_A Nitrate transport prote 48.7 25 0.00087 29.2 5.3 57 72-140 128-184 (324)
223 1oft_A SULA, hypothetical prot 48.7 23 0.0008 28.8 4.8 58 74-140 74-131 (161)
224 3n7t_A Macrophage binding prot 48.4 32 0.0011 29.1 5.9 92 76-176 10-143 (247)
225 1z0s_A Probable inorganic poly 48.3 32 0.0011 30.1 6.0 50 74-143 28-77 (278)
226 3i45_A Twin-arginine transloca 47.9 95 0.0033 26.1 8.8 92 73-177 3-103 (387)
227 4fe7_A Xylose operon regulator 47.7 75 0.0026 27.5 8.3 96 74-184 138-241 (412)
228 1rw7_A YDR533CP; alpha-beta sa 47.4 25 0.00086 29.0 5.0 39 133-175 97-135 (243)
229 2iss_D Glutamine amidotransfer 47.3 44 0.0015 26.7 6.3 84 68-178 13-97 (208)
230 3loq_A Universal stress protei 46.8 1.2E+02 0.004 24.7 9.8 76 90-176 212-287 (294)
231 1o4v_A Phosphoribosylaminoimid 46.7 77 0.0026 26.5 7.8 121 74-215 12-146 (183)
232 1vlj_A NADH-dependent butanol 46.5 70 0.0024 28.6 8.1 61 76-143 44-110 (407)
233 2e4u_A Metabotropic glutamate 46.3 44 0.0015 30.4 6.9 65 75-143 186-253 (555)
234 2hqb_A Transcriptional activat 45.5 48 0.0016 27.6 6.5 59 75-141 126-188 (296)
235 3s40_A Diacylglycerol kinase; 45.4 45 0.0015 28.5 6.4 87 76-180 9-96 (304)
236 2zki_A 199AA long hypothetical 45.1 18 0.00063 28.1 3.6 39 76-119 5-43 (199)
237 2j6l_A Aldehyde dehydrogenase 45.0 1.1E+02 0.0039 28.1 9.5 87 95-191 205-291 (500)
238 1ta9_A Glycerol dehydrogenase; 44.6 66 0.0023 29.6 7.8 59 77-143 93-154 (450)
239 1y7p_A Hypothetical protein AF 44.6 43 0.0015 28.9 6.0 88 75-176 87-176 (223)
240 3s99_A Basic membrane lipoprot 44.6 22 0.00076 31.5 4.5 67 73-143 24-95 (356)
241 3jy6_A Transcriptional regulat 44.2 30 0.001 27.7 4.9 93 74-185 122-220 (276)
242 3ix1_A N-formyl-4-amino-5-amin 44.2 28 0.00097 28.4 4.8 56 71-139 102-157 (302)
243 3dmy_A Protein FDRA; predicted 44.1 63 0.0022 30.3 7.7 85 123-210 317-412 (480)
244 2amj_A Modulator of drug activ 44.0 80 0.0027 25.3 7.4 60 75-140 12-76 (204)
245 3uif_A Sulfonate ABC transport 43.8 26 0.00087 29.7 4.6 56 72-139 116-171 (348)
246 1xah_A Sadhqs, 3-dehydroquinat 43.4 68 0.0023 28.1 7.4 59 76-143 32-99 (354)
247 2h2w_A Homoserine O-succinyltr 43.4 32 0.0011 30.6 5.3 110 72-193 44-166 (312)
248 3fkr_A L-2-keto-3-deoxyarabona 43.3 43 0.0015 29.1 6.0 69 118-191 24-96 (309)
249 1o2d_A Alcohol dehydrogenase, 43.2 43 0.0015 29.6 6.1 63 76-143 41-107 (371)
250 2q5c_A NTRC family transcripti 43.2 75 0.0026 25.7 7.2 88 75-193 4-92 (196)
251 2h4a_A YRAM (HI1655); perplasm 43.1 46 0.0016 28.7 6.2 63 75-143 122-184 (325)
252 3un6_A Hypothetical protein sa 42.3 42 0.0015 28.2 5.7 58 72-140 150-208 (341)
253 3h5l_A Putative branched-chain 42.1 47 0.0016 28.5 6.0 65 74-143 163-228 (419)
254 3qsl_A Putative exported prote 41.0 29 0.00099 28.4 4.4 58 72-140 135-193 (346)
255 2ehh_A DHDPS, dihydrodipicolin 40.5 75 0.0025 27.2 7.1 70 117-191 15-88 (294)
256 3fdx_A Putative filament prote 40.4 60 0.002 23.1 5.6 80 87-175 61-140 (143)
257 2izo_A FEN1, flap structure-sp 40.3 36 0.0012 30.1 5.1 56 88-156 123-178 (346)
258 3ipc_A ABC transporter, substr 40.1 1.5E+02 0.0052 24.2 10.7 89 75-177 2-99 (356)
259 1o5k_A DHDPS, dihydrodipicolin 40.1 70 0.0024 27.7 6.9 70 117-191 27-100 (306)
260 3n0w_A ABC branched chain amin 40.0 1.4E+02 0.0046 25.0 8.5 92 73-177 4-103 (379)
261 3eaf_A ABC transporter, substr 39.7 1.7E+02 0.0058 24.6 10.2 90 74-177 3-105 (391)
262 3b4u_A Dihydrodipicolinate syn 39.7 61 0.0021 27.9 6.4 69 118-191 19-91 (294)
263 3a5f_A Dihydrodipicolinate syn 39.6 51 0.0017 28.3 5.8 60 127-191 29-89 (291)
264 2yxg_A DHDPS, dihydrodipicolin 39.4 71 0.0024 27.3 6.7 70 117-191 15-88 (289)
265 3cpr_A Dihydrodipicolinate syn 38.9 60 0.0021 28.1 6.3 69 118-191 32-104 (304)
266 4f06_A Extracellular ligand-bi 38.2 1E+02 0.0035 26.0 7.6 65 74-143 138-203 (371)
267 1rrm_A Lactaldehyde reductase; 38.2 30 0.001 30.6 4.3 61 76-142 32-96 (386)
268 1a76_A Flap endonuclease-1 pro 38.2 34 0.0012 29.9 4.6 45 89-140 127-171 (326)
269 2ojp_A DHDPS, dihydrodipicolin 38.0 48 0.0016 28.4 5.4 69 118-191 17-89 (292)
270 1xky_A Dihydrodipicolinate syn 37.7 70 0.0024 27.6 6.5 69 118-191 28-100 (301)
271 3qfe_A Putative dihydrodipicol 37.6 69 0.0024 28.0 6.5 69 118-191 27-99 (318)
272 3flu_A DHDPS, dihydrodipicolin 37.4 70 0.0024 27.5 6.4 69 118-191 23-95 (297)
273 3r75_A Anthranilate/para-amino 37.4 74 0.0025 30.8 7.2 84 73-178 444-527 (645)
274 3kbq_A Protein TA0487; structu 37.3 49 0.0017 26.8 5.1 60 97-163 28-88 (172)
275 3uug_A Multiple sugar-binding 37.1 64 0.0022 26.3 5.9 84 75-169 131-229 (330)
276 3vni_A Xylose isomerase domain 37.1 1.6E+02 0.0056 23.7 9.1 102 76-180 2-110 (294)
277 2wkj_A N-acetylneuraminate lya 36.6 73 0.0025 27.5 6.4 69 118-191 27-99 (303)
278 3bfj_A 1,3-propanediol oxidore 36.5 25 0.00084 31.2 3.4 65 76-143 34-101 (387)
279 1di6_A MOGA, molybdenum cofact 36.4 60 0.002 26.6 5.6 84 75-161 3-90 (195)
280 2g29_A Nitrate transport prote 36.0 44 0.0015 29.6 5.0 56 73-140 153-210 (417)
281 3s5o_A 4-hydroxy-2-oxoglutarat 35.8 85 0.0029 27.1 6.7 56 132-191 46-102 (307)
282 4gnr_A ABC transporter substra 35.8 1.8E+02 0.0063 23.8 9.2 93 73-178 5-106 (353)
283 2x26_A Periplasmic aliphatic s 35.5 56 0.0019 26.6 5.2 58 71-140 101-158 (308)
284 3daq_A DHDPS, dihydrodipicolin 35.5 1E+02 0.0035 26.4 7.2 60 126-191 29-90 (292)
285 1n57_A Chaperone HSP31, protei 35.2 43 0.0015 28.8 4.7 39 75-118 48-99 (291)
286 3l21_A DHDPS, dihydrodipicolin 35.0 81 0.0028 27.3 6.5 60 127-191 43-103 (304)
287 3hly_A Flavodoxin-like domain; 34.9 1.5E+02 0.0051 22.5 9.5 88 76-177 1-89 (161)
288 3pzy_A MOG; ssgcid, seattle st 34.9 1.4E+02 0.0047 23.5 7.3 79 75-160 7-89 (164)
289 2pju_A Propionate catabolism o 34.7 41 0.0014 28.3 4.4 85 75-190 106-190 (225)
290 1u0t_A Inorganic polyphosphate 34.3 33 0.0011 29.6 3.8 31 76-107 5-35 (307)
291 3l18_A Intracellular protease 33.8 25 0.00085 26.8 2.7 90 75-175 2-99 (168)
292 2rk3_A Protein DJ-1; parkinson 33.7 1E+02 0.0035 24.1 6.4 91 76-176 4-104 (197)
293 2rfg_A Dihydrodipicolinate syn 33.7 63 0.0021 27.9 5.5 69 118-191 16-88 (297)
294 4dpp_A DHDPS 2, dihydrodipicol 33.5 85 0.0029 28.4 6.5 69 118-191 75-147 (360)
295 3q8k_A Flap endonuclease 1; he 33.5 43 0.0015 29.8 4.5 54 90-156 133-186 (341)
296 2q5c_A NTRC family transcripti 33.1 39 0.0013 27.4 3.9 62 110-191 119-180 (196)
297 3i09_A Periplasmic branched-ch 32.9 1.5E+02 0.0052 24.6 7.7 91 74-177 3-101 (375)
298 3e96_A Dihydrodipicolinate syn 32.8 63 0.0021 28.1 5.4 68 118-191 28-99 (316)
299 2v9d_A YAGE; dihydrodipicolini 32.6 75 0.0026 28.1 5.9 61 126-191 58-119 (343)
300 3ttv_A Catalase HPII; heme ori 32.5 14 0.00047 37.1 1.2 93 72-176 597-697 (753)
301 3si9_A DHDPS, dihydrodipicolin 32.2 71 0.0024 27.9 5.7 60 127-191 50-110 (315)
302 2vc6_A MOSA, dihydrodipicolina 32.1 48 0.0016 28.4 4.5 69 118-191 16-88 (292)
303 2r8w_A AGR_C_1641P; APC7498, d 32.0 80 0.0027 27.8 6.0 61 126-191 61-122 (332)
304 3ory_A Flap endonuclease 1; hy 32.0 46 0.0016 29.9 4.5 55 90-157 142-196 (363)
305 1x10_A Pyrrolidone-carboxylate 31.9 40 0.0014 28.1 3.8 37 153-190 139-177 (208)
306 3ixl_A Amdase, arylmalonate de 31.2 2.2E+02 0.0077 23.5 8.9 98 75-194 117-226 (240)
307 1gpw_B Amidotransferase HISH; 31.1 97 0.0033 24.3 5.9 80 76-178 1-83 (201)
308 2ab0_A YAJL; DJ-1/THIJ superfa 31.1 1.1E+02 0.0038 24.3 6.2 89 76-175 3-103 (205)
309 1sqs_A Conserved hypothetical 31.0 84 0.0029 25.5 5.6 38 76-116 2-41 (242)
310 3ks9_A Mglur1, metabotropic gl 30.9 1E+02 0.0035 27.8 6.6 64 75-142 197-264 (496)
311 3d0c_A Dihydrodipicolinate syn 30.8 62 0.0021 28.2 5.0 59 127-191 40-99 (314)
312 3hl0_A Maleylacetate reductase 30.6 31 0.0011 30.6 3.1 75 76-176 35-116 (353)
313 3dz1_A Dihydrodipicolinate syn 30.5 1.4E+02 0.0046 25.9 7.2 59 127-191 36-95 (313)
314 3na8_A Putative dihydrodipicol 30.3 83 0.0028 27.4 5.7 61 126-191 51-112 (315)
315 3lq1_A 2-succinyl-5-enolpyruvy 30.1 89 0.0031 29.0 6.3 32 92-127 12-43 (578)
316 2wvg_A PDC, pyruvate decarboxy 29.7 71 0.0024 29.5 5.5 29 95-127 7-35 (568)
317 3lac_A Pyrrolidone-carboxylate 29.7 34 0.0012 28.7 3.0 39 153-191 140-179 (215)
318 3tak_A DHDPS, dihydrodipicolin 29.6 88 0.003 26.7 5.7 69 118-191 17-89 (291)
319 2zvr_A Uncharacterized protein 29.6 2.2E+02 0.0077 23.0 9.0 105 68-176 13-131 (290)
320 4hps_A Pyrrolidone-carboxylate 29.6 29 0.00098 29.6 2.5 38 153-190 162-200 (228)
321 2gm3_A Unknown protein; AT3G01 29.6 1.7E+02 0.0059 21.6 7.5 75 91-176 86-160 (175)
322 1a2z_A Pyrrolidone carboxyl pe 29.5 43 0.0015 28.2 3.6 37 153-190 140-178 (220)
323 3pqa_A Lactaldehyde dehydrogen 29.4 1.9E+02 0.0063 26.7 8.2 92 89-191 172-263 (486)
324 2gru_A 2-deoxy-scyllo-inosose 29.3 1.9E+02 0.0063 25.5 8.0 62 75-143 34-103 (368)
325 3qze_A DHDPS, dihydrodipicolin 29.3 89 0.003 27.2 5.8 56 132-191 55-111 (314)
326 3s3t_A Nucleotide-binding prot 28.5 1.5E+02 0.005 21.0 6.0 77 89-175 66-143 (146)
327 3vc1_A Geranyl diphosphate 2-C 28.3 27 0.00092 29.3 2.1 64 89-167 148-211 (312)
328 2q62_A ARSH; alpha/beta, flavo 28.2 1.1E+02 0.0036 25.7 5.9 40 74-116 33-73 (247)
329 2h31_A Multifunctional protein 27.9 2.2E+02 0.0075 26.5 8.4 121 74-215 264-396 (425)
330 3qek_A NMDA glutamate receptor 27.7 94 0.0032 26.2 5.5 66 75-143 139-224 (384)
331 2vbi_A Pyruvate decarboxylase; 27.3 68 0.0023 29.6 4.9 29 95-127 7-35 (566)
332 3eya_A Pyruvate dehydrogenase 27.3 81 0.0028 29.0 5.4 29 95-127 7-35 (549)
333 3dlc_A Putative S-adenosyl-L-m 26.8 67 0.0023 24.3 4.1 46 91-144 76-121 (219)
334 3lab_A Putative KDPG (2-keto-3 26.4 50 0.0017 28.0 3.5 97 78-190 16-131 (217)
335 1mjh_A Protein (ATP-binding do 26.4 1.7E+02 0.0059 21.2 6.2 75 91-176 82-156 (162)
336 1ox0_A Beta ketoacyl-acyl carr 26.1 2.4E+02 0.0082 25.0 8.2 15 129-143 196-210 (430)
337 1b43_A Protein (FEN-1); nuclea 26.0 77 0.0026 27.7 4.8 57 89-158 127-183 (340)
338 2vzf_A NADH-dependent FMN redu 25.9 1.2E+02 0.0042 23.6 5.6 37 77-116 4-42 (197)
339 1ovm_A Indole-3-pyruvate decar 25.7 98 0.0034 28.3 5.6 29 95-127 9-37 (552)
340 2vbf_A Branched-chain alpha-ke 25.4 99 0.0034 28.5 5.6 29 95-127 29-57 (570)
341 1t9b_A Acetolactate synthase, 25.2 72 0.0025 30.7 4.8 29 95-127 86-114 (677)
342 4e38_A Keto-hydroxyglutarate-a 25.1 51 0.0017 28.0 3.3 84 99-190 53-146 (232)
343 3kkz_A Uncharacterized protein 25.0 29 0.00098 28.1 1.7 45 91-143 79-123 (267)
344 2ark_A Flavodoxin; FMN, struct 24.9 1.3E+02 0.0043 23.3 5.4 39 76-118 5-44 (188)
345 1nkv_A Hypothetical protein YJ 24.7 66 0.0023 25.4 3.8 17 91-107 69-85 (256)
346 3ed6_A Betaine aldehyde dehydr 24.7 2.5E+02 0.0087 26.0 8.3 85 98-191 217-301 (520)
347 1u9c_A APC35852; structural ge 24.7 47 0.0016 26.5 2.9 93 76-175 6-126 (224)
348 3n0x_A Possible substrate bind 24.5 3.1E+02 0.01 22.9 9.5 91 74-177 3-103 (374)
349 3f4k_A Putative methyltransfer 24.5 38 0.0013 26.8 2.3 46 91-144 79-124 (257)
350 2nv0_A Glutamine amidotransfer 24.4 2.5E+02 0.0084 21.7 7.8 75 76-178 2-78 (196)
351 2pan_A Glyoxylate carboligase; 24.3 99 0.0034 28.9 5.5 29 95-127 31-59 (616)
352 3n0x_A Possible substrate bind 24.3 1.1E+02 0.0039 25.6 5.4 63 75-141 141-208 (374)
353 2x7j_A 2-succinyl-5-enolpyruvy 24.2 1.2E+02 0.0041 28.3 6.0 59 93-166 33-91 (604)
354 3rfq_A Pterin-4-alpha-carbinol 24.2 1.6E+02 0.0056 23.9 6.1 93 74-174 29-137 (185)
355 3o3m_A Alpha subunit 2-hydroxy 24.1 3.2E+02 0.011 24.3 8.6 67 130-214 330-401 (408)
356 1uuy_A CNX1, molybdopterin bio 24.1 94 0.0032 24.3 4.5 81 74-161 4-95 (167)
357 3s2y_A Chromate reductase; ura 29.8 16 0.00056 29.5 0.0 33 74-107 5-38 (199)
358 3etf_A Putative succinate-semi 23.9 2.4E+02 0.0082 25.4 7.8 83 99-191 174-256 (462)
359 2fzv_A Putative arsenical resi 23.7 67 0.0023 27.9 3.9 40 74-116 57-97 (279)
360 1kpg_A CFA synthase;, cyclopro 23.6 93 0.0032 25.2 4.6 43 91-144 97-139 (287)
361 4e4g_A Methylmalonate-semialde 23.6 2.8E+02 0.0097 25.7 8.4 84 98-191 209-292 (521)
362 4f3p_A Glutamine-binding perip 23.5 1.2E+02 0.0042 23.3 5.1 54 72-143 127-180 (249)
363 4gxh_A Pyrrolidone-carboxylate 23.5 44 0.0015 28.1 2.5 38 153-191 141-180 (216)
364 4gi5_A Quinone reductase; prot 23.4 1E+02 0.0035 26.6 5.0 40 74-116 21-61 (280)
365 3ro0_A Pyrrolidone-carboxylate 23.4 62 0.0021 27.4 3.5 34 110-143 37-71 (223)
366 3clh_A 3-dehydroquinate syntha 23.4 76 0.0026 27.8 4.2 60 75-143 26-94 (343)
367 2vrn_A Protease I, DR1199; cys 23.3 44 0.0015 25.9 2.4 93 74-176 8-113 (190)
368 2qul_A D-tagatose 3-epimerase; 23.3 2.8E+02 0.0097 22.0 8.1 100 76-179 2-109 (290)
369 1xp8_A RECA protein, recombina 23.3 1.7E+02 0.0057 26.0 6.5 111 51-177 84-207 (366)
370 1a4s_A ALDH, betaine aldehyde 22.9 1.4E+02 0.0047 27.6 6.1 92 98-199 202-294 (503)
371 1oj7_A Hypothetical oxidoreduc 22.6 1.6E+02 0.0055 26.2 6.3 59 76-143 51-115 (408)
372 4b9q_A Chaperone protein DNAK; 22.5 15 0.00052 34.8 -0.5 60 87-146 310-378 (605)
373 1iu8_A Pyrrolidone-carboxylate 22.5 1.2E+02 0.0043 25.0 5.2 34 110-143 32-66 (206)
374 3hww_A 2-succinyl-5-enolpyruvy 22.4 1.7E+02 0.0057 27.0 6.6 29 95-127 12-40 (556)
375 2dum_A Hypothetical protein PH 22.4 1.9E+02 0.0065 21.2 5.8 77 89-176 75-153 (170)
376 1d4a_A DT-diaphorase, quinone 22.3 2.3E+02 0.0077 23.7 6.9 38 76-116 3-41 (273)
377 1g8l_A Molybdopterin biosynthe 22.1 71 0.0024 29.2 3.9 75 98-179 210-289 (411)
378 3jzd_A Iron-containing alcohol 22.1 43 0.0015 29.8 2.4 79 76-181 37-122 (358)
379 3giu_A Pyrrolidone-carboxylate 21.6 59 0.002 27.3 3.0 38 153-190 141-179 (215)
380 2lpm_A Two-component response 21.3 1.4E+02 0.0046 22.3 4.8 91 73-192 6-98 (123)
381 2fts_A Gephyrin; gephyrin, neu 21.3 1.1E+02 0.0037 27.9 4.9 76 98-180 214-296 (419)
382 1rxw_A Flap structure-specific 21.3 1.1E+02 0.0038 26.6 4.9 53 92-157 129-181 (336)
383 3r31_A BADH, betaine aldehyde 21.2 2.6E+02 0.0089 26.0 7.6 92 99-200 198-290 (517)
384 3s99_A Basic membrane lipoprot 21.1 3.1E+02 0.011 24.0 7.7 63 75-141 149-215 (356)
385 1eep_A Inosine 5'-monophosphat 21.0 2.4E+02 0.0083 24.9 7.1 67 117-189 200-276 (404)
386 4h86_A Peroxiredoxin type-2; o 21.0 1E+02 0.0035 25.8 4.3 34 110-143 71-114 (199)
387 1ybh_A Acetolactate synthase, 20.8 87 0.003 29.1 4.3 29 95-127 16-44 (590)
388 4dz1_A DALS D-alanine transpor 20.8 62 0.0021 25.5 2.8 59 72-142 134-192 (259)
389 3tem_A Ribosyldihydronicotinam 20.7 1E+02 0.0035 25.3 4.3 39 75-116 1-40 (228)
390 1oi4_A Hypothetical protein YH 20.6 29 0.00098 27.5 0.8 90 74-175 22-122 (193)
391 3l7n_A Putative uncharacterize 20.6 1E+02 0.0036 25.1 4.3 55 76-144 1-55 (236)
392 2ve5_A BADH, betaine aldehyde 20.6 2.3E+02 0.0079 25.8 7.0 83 99-191 190-274 (490)
393 1q6z_A BFD, BFDC, benzoylforma 20.5 90 0.0031 28.5 4.3 28 95-126 6-33 (528)
394 3k9d_A LMO1179 protein, aldehy 20.4 4.8E+02 0.016 23.5 10.4 81 97-199 158-248 (464)
395 4feg_A Pyruvate oxidase; carba 20.3 1.5E+02 0.0052 27.6 5.9 29 95-127 15-43 (603)
396 2ywd_A Glutamine amidotransfer 20.1 2.9E+02 0.01 21.0 7.0 76 76-178 3-80 (191)
397 2pcq_A Putative dihydrodipicol 20.0 64 0.0022 27.6 3.0 65 118-191 14-81 (283)
398 3ros_A NAD-dependent aldehyde 20.0 5E+02 0.017 23.7 9.8 91 99-199 171-262 (484)
No 1
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=100.00 E-value=1.9e-61 Score=401.04 Aligned_cols=152 Identities=45% Similarity=0.814 Sum_probs=147.9
Q ss_pred HhhhcccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCC-CCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEE
Q 027801 63 VRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYS-VKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (218)
Q Consensus 63 ~~~~~~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~G-v~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaL 141 (218)
|+.++|++. ++++||+||+||||++|+++|+++|+++|+++| +++++|+++||||+||||+++|+|+++++|||||||
T Consensus 1 m~~~~g~~~-~~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaL 79 (156)
T 3nq4_A 1 MNIIKANVA-APDARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVAL 79 (156)
T ss_dssp CEEEECCSC-CTTCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEEEE
T ss_pred CceecCccC-CCCCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEe
Confidence 566788885 899999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred eeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHhh
Q 027801 142 GAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 142 G~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~k~gnKG~EAA~aAleM~~L~~~ 215 (218)
||||||+|+||||||+++++|||++||++++||+||||||+|+|||++|+|.+.+|||.|||.+|+||++|+++
T Consensus 80 G~VIrG~T~Hfd~Va~~v~~Gl~~v~L~~~vPV~~GVLT~~~~eQA~~Rag~~~~nKG~eaA~aalem~~l~~~ 153 (156)
T 3nq4_A 80 GTVIRGGTAHFEYVAGGASNGLASVAQDSGVPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKA 153 (156)
T ss_dssp EEEECCSSTHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEESCHHHHHHHBTSTTCBHHHHHHHHHHHHHHHHHT
T ss_pred eeeecCCchHHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCHHHHHHHhCCcccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=100.00 E-value=1e-60 Score=396.56 Aligned_cols=153 Identities=77% Similarity=1.267 Sum_probs=146.3
Q ss_pred hhhcccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 64 RHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 64 ~~~~~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
+.++|+++++++.|||||+||||++|+++|+++|+++|+++|++ ++|+++||||+||||+++|+|+++++|||||||||
T Consensus 2 ~~~~g~~~~~~~~ri~IV~arfn~~I~~~Ll~ga~~~l~~~Gv~-~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~ 80 (156)
T 1c2y_A 2 NELEGYVTKAQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVN-EDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGA 80 (156)
T ss_dssp EEECCCSSSCTTCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCC-SCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred ccccccccCCCCCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCC-CceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 34567764578899999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred eeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHhhhc
Q 027801 144 VVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEHHL 217 (218)
Q Consensus 144 VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~k~gnKG~EAA~aAleM~~L~~~~~ 217 (218)
||||+|+||||||+++++|||++||++++||+||||||+|+|||++|+|.+.+|||.|||.+|+||++|+++-.
T Consensus 81 VIrG~T~Hfd~Va~~v~~gl~~v~L~~~vPV~~GVLT~~~~eQA~~Rag~~~~nKG~eaA~aAlem~~l~~~l~ 154 (156)
T 1c2y_A 81 VVKGDTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGGKAGNKGAESALTAIEMASLFEHHL 154 (156)
T ss_dssp CCCCSSTHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCSSHHHHHHHEEETTEEHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHHcCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998754
No 3
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=100.00 E-value=2.1e-60 Score=393.88 Aligned_cols=151 Identities=44% Similarity=0.720 Sum_probs=145.3
Q ss_pred hhhcccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 64 RHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 64 ~~~~~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
+.++|++ ++++.|||||+||||++|+++|+++|+++|+++|+++++|+++||||+||||+++|+|+++++|||||||||
T Consensus 2 ~~~~g~~-~~~~~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~ 80 (154)
T 1hqk_A 2 QIYEGKL-TAEGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGV 80 (154)
T ss_dssp EEECCCS-CCTTCCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEE
T ss_pred CcccCCc-CCCCCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeee
Confidence 3456766 478899999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred eeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHhh
Q 027801 144 VVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 144 VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~k~gnKG~EAA~aAleM~~L~~~ 215 (218)
||||+|+||||||+++++|||++||++++||+|||||++|+|||++|+|.+.+|||.|||.+|++|++|+++
T Consensus 81 VIrG~T~Hfd~Va~~vs~gl~~v~l~~~vPV~~GVLT~~~~eQA~~Rag~~~~nkG~eaA~aalem~~l~~~ 152 (154)
T 1hqk_A 81 LIRGATPHFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERAGTKHGNKGWEAALSAIEMANLFKS 152 (154)
T ss_dssp EECCSSTHHHHHHHHHHHHHHHHHHHHTSCEEEEEEEESSHHHHHHHEEETTEEHHHHHHHHHHHHHHHHHH
T ss_pred eecCCchHHHHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHHhcccccchHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
No 4
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=100.00 E-value=2.1e-60 Score=394.01 Aligned_cols=151 Identities=46% Similarity=0.814 Sum_probs=145.3
Q ss_pred hhhcccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 64 RHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 64 ~~~~~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
+.++|++ ++++.|||||+||||++|+++|+++|+++|+++|+++++|+++||||+||||+++|+|+++++|||||||||
T Consensus 2 ~~~~g~~-~~~~~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~ 80 (154)
T 1rvv_A 2 NIIQGNL-VGTGLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGT 80 (154)
T ss_dssp EEECCCS-CCTTCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEE
T ss_pred CcccCCc-CCCCCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeee
Confidence 3456766 478899999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred eeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHhh
Q 027801 144 VVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 144 VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~k~gnKG~EAA~aAleM~~L~~~ 215 (218)
||||+|+||||||+++++|||++||++++||+|||||++|+|||++|+|.+.+|||.|||.+|++|++|+++
T Consensus 81 VIrG~T~Hfd~V~~~vs~Gl~~v~l~~~vPV~~GVLT~~~~eQA~~Rag~~~~nkG~eaA~aalem~~l~~~ 152 (154)
T 1rvv_A 81 VIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAGTKAGNKGVDCAVSAIEMANLNRS 152 (154)
T ss_dssp EECCSSSHHHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSHHHHHHTEEETTEEHHHHHHHHHHHHHHHHHH
T ss_pred eecCCchHHHHHHHHHHHHHHHHHhhhCCCEEEEecCCCCHHHHHHHhcccccchHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
No 5
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=100.00 E-value=5.5e-59 Score=387.29 Aligned_cols=146 Identities=37% Similarity=0.521 Sum_probs=140.4
Q ss_pred ccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHH-CCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeee
Q 027801 68 GFLTKNEGLRFALVVARFNELVTKLLLEGALETFKK-YSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVR 146 (218)
Q Consensus 68 ~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~-~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIr 146 (218)
+.+ ++++.|||||+||||++|+++|+++|+++|++ +|+++++|+++||||+||||+++|+|+++++||||||||||||
T Consensus 11 ~~~-~~~~~riaIV~arfn~~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIr 89 (159)
T 1kz1_A 11 SDL-KGPELRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIK 89 (159)
T ss_dssp CCC-CCTTCCEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEEEEEEEEC
T ss_pred CCc-CCCCCEEEEEEeeCcHHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeccccc
Confidence 444 46789999999999999999999999999999 9999899999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhC-CCCCCcHHHHHHHHHHHHHHHh
Q 027801 147 GDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG-GKSGNKGAEAALTAIEMASLFE 214 (218)
Q Consensus 147 GeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag-~k~gnKG~EAA~aAleM~~L~~ 214 (218)
|+|+||||||+++++|||++||++++||+|||||++|+|||++|+| .+.+|||.|||.+|+||++|++
T Consensus 90 G~T~Hfd~Va~~v~~Gl~~v~L~~~vPV~~GVLT~~~~eQA~~Rag~~~~~nKG~eaA~aalem~~l~~ 158 (159)
T 1kz1_A 90 GSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALYRAGLNGGHNHGNDWGSAAVEMGLKAL 158 (159)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEESSHHHHHHHBTCTTCCBHHHHHHHHHHHHHHHTC
T ss_pred CCchHHHHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHHhCCccccchHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999 7779999999999999999975
No 6
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=100.00 E-value=2.9e-58 Score=382.14 Aligned_cols=138 Identities=30% Similarity=0.440 Sum_probs=135.1
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhc-----CCccEEEEEeeeeeCCc
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKS-----GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~-----~~yDaVIaLG~VIrGeT 149 (218)
++|||||+||||++|+++|+++|+++|+++| ++|+++||||+||||+++|+|+++ ++|||||||||||||+|
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G---~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T 88 (157)
T 2i0f_A 12 APHLLIVEARFYDDLADALLDGAKAALDEAG---ATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGET 88 (157)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHHHHHHTT---CEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSS
T ss_pred CcEEEEEEEeCcHHHHHHHHHHHHHHHHHcC---CCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCc
Confidence 4899999999999999999999999999999 489999999999999999999998 99999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHhh
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~k~gnKG~EAA~aAleM~~L~~~ 215 (218)
+||||||+++++|||++||++++||+||||||+|+|||++|+|.+.+|||.|||.+|+||++|+++
T Consensus 89 ~Hfd~Va~~v~~gl~~vsl~~~vPV~~GVLT~~~~eQA~~Rag~~~~nkG~eaA~aAlem~~l~~~ 154 (157)
T 2i0f_A 89 YHFDIVSNESCRALTDLSVEESIAIGNGILTVENEEQAWVHARREDKDKGGFAARAALTMIGLRKK 154 (157)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHCTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHHhCccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986
No 7
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=100.00 E-value=3.5e-58 Score=385.34 Aligned_cols=144 Identities=31% Similarity=0.541 Sum_probs=139.0
Q ss_pred CCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhh-----cCCccEEEEEeeeee
Q 027801 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK-----SGKYTAVLCIGAVVR 146 (218)
Q Consensus 72 ~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~-----~~~yDaVIaLG~VIr 146 (218)
+++++|||||+||||++|++.|+++|+++|+++|+++++|+++||||+||||+++|+|++ +++||||||||||||
T Consensus 13 ~~~~~ri~IV~arfn~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~~yDavIaLG~VIr 92 (168)
T 1ejb_A 13 DGSKIRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLIK 92 (168)
T ss_dssp CCTTCCEEEEECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEEEEEEEEC
T ss_pred CCCCCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCCCcCEEEEeccccc
Confidence 467899999999999999999999999999999999899999999999999999999998 789999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCC----CCCCcHHHHHHHHHHHHHHHhh
Q 027801 147 GDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGG----KSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 147 GeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~----k~gnKG~EAA~aAleM~~L~~~ 215 (218)
|+|+||||||+++++|||++||++++||+|||||++|+|||++|+|. +.+|||.|||.+||||++++++
T Consensus 93 G~T~Hfd~Va~~vs~Gl~~vsL~~~vPV~~GVLT~~~~eQA~~Rag~~~~~~~~nkG~eaA~aAlem~~l~~~ 165 (168)
T 1ejb_A 93 GSTMHFEYISDSTTHALMNLQEKVDMPVIFGLLTCMTEEQALARAGIDEAHSMHNHGEDWGAAAVEMAVKFGK 165 (168)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHTSCBCCEEEEESSHHHHHHHBTCSTTCCSCBHHHHHHHHHHHHHHHHST
T ss_pred CCchHHHHHHHHHHHHHHHHHhhcCCCEEEEEecCCCHHHHHHhcCccccccccchHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999997 5579999999999999999876
No 8
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=100.00 E-value=2.1e-58 Score=382.93 Aligned_cols=145 Identities=28% Similarity=0.372 Sum_probs=139.9
Q ss_pred CCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 71 TKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 71 ~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
++++++|||||+||||++|++.|+++|+++|+++|+++++|+++||||+||||+++|+|+++++|||||||||||||+|+
T Consensus 7 ~~~~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~ 86 (157)
T 2obx_A 7 KDYETVRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVLGTAFVVNGGIY 86 (157)
T ss_dssp CSCCCEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEEEEEECCCCSSB
T ss_pred CCCCCCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCCCc
Confidence 35788999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh---CCCCCCcHHHHHHHHHHHHHHHhh
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA---GGKSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra---g~k~gnKG~EAA~aAleM~~L~~~ 215 (218)
||||||+++++|||++||++++||+||||||+|+|||++|+ +.+.+|||.|||.+|++|++|+++
T Consensus 87 Hfd~Va~~vs~Gl~~v~L~~~vPV~~GVLT~~~~eqa~eR~~~~~~~~~nKG~eaA~aalem~~l~~~ 154 (157)
T 2obx_A 87 RHEFVASAVIDGMMNVQLSTGVPVLSAVLTPHNYHDSAEHHRFFFEHFTVKGKEAARACVEILAAREK 154 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCCEEEEEECBSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhhhhcchhcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 456689999999999999999986
No 9
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=100.00 E-value=2.5e-58 Score=382.85 Aligned_cols=144 Identities=22% Similarity=0.350 Sum_probs=138.1
Q ss_pred CCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 72 ~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
+++++|||||+||||++|+++|+++|+++|+++|+++++|+++||||+||||+++|+|+++++|||||||||||||+|+|
T Consensus 7 ~~~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~H 86 (158)
T 1di0_A 7 NKTSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYD 86 (158)
T ss_dssp --CCEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEECCCCSSBC
T ss_pred CCCCCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCCCcH
Confidence 46789999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh---CCCCCCcHHHHHHHHHHHHHHHhh
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA---GGKSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra---g~k~gnKG~EAA~aAleM~~L~~~ 215 (218)
|||||+++++|||++||++++||+|||||++|+|||++|+ +.+.+|||.|||.+|++|++++++
T Consensus 87 fd~Va~~vs~Gl~~v~L~~~vPV~~GVLT~~~~eqA~er~~~~~~~~~nKG~eaA~aal~m~~l~~~ 153 (158)
T 1di0_A 87 HDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSR 153 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCEEEEEECBSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhhhhcchhcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 456689999999999999999986
No 10
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=100.00 E-value=3.2e-56 Score=370.93 Aligned_cols=140 Identities=34% Similarity=0.552 Sum_probs=135.1
Q ss_pred CCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 72 ~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
++++.|||||+||||++|+++|+++|+++|+++|++ +|+++||||+||||+++|+|++ +|||||||||||||+|+|
T Consensus 14 ~~~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~--~i~v~~VPGafEiP~aak~la~--~yDavIaLG~VIrG~T~H 89 (160)
T 2c92_A 14 DASGVRLAIVASSWHGKICDALLDGARKVAAGCGLD--DPTVVRVLGAIEIPVVAQELAR--NHDAVVALGVVIRGQTPH 89 (160)
T ss_dssp CCTTCCEEEEEECSSHHHHHHHHHHHHHHHHHTTCS--CCEEEEESSGGGHHHHHHHHHT--SCSEEEEEEEEECCSSTH
T ss_pred CCCCCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCC--ceEEEECCcHHHHHHHHHHHHh--cCCEEEEEeeeecCCchH
Confidence 467899999999999999999999999999999986 8999999999999999999986 599999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCC--CCCCcHHHHHHHHHHHHHHHhh
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGG--KSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~--k~gnKG~EAA~aAleM~~L~~~ 215 (218)
|||||+++++|||++||++++||+|||||++|+|||++|+|. +.+|||.|||.+|++|++++++
T Consensus 90 fd~Va~~vs~Gl~~v~L~~~vPV~~GVLT~~~~eQA~~Rag~~~~~~nKG~eaA~aalem~~l~~~ 155 (160)
T 2c92_A 90 FDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRE 155 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEEEEESSHHHHHTTBTCTTCSCBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCHHHHHHHhccccccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999985 6899999999999999999886
No 11
>1c41_A Lumazine synthase; riboflavin biosynthesis, transferase; HET: LMZ; 3.10A {Magnaporthe grisea} SCOP: c.16.1.1
Probab=100.00 E-value=5.5e-57 Score=386.69 Aligned_cols=145 Identities=38% Similarity=0.605 Sum_probs=139.8
Q ss_pred CCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhh--------------------
Q 027801 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK-------------------- 131 (218)
Q Consensus 72 ~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~-------------------- 131 (218)
+++++||+||++|||++|++.|+++|+++|+++|++++||+++||||+||||+++++|++
T Consensus 12 ~g~~lriaIV~arfn~~I~~~Ll~GA~~~L~~~Gv~~~~I~v~~VPGa~ElP~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (200)
T 1c41_A 12 DGSALRIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRLYSASQLQTPSSGPSLSAGDLLG 91 (200)
Confidence 467899999999999999999999999999999999999999999999999999999987
Q ss_pred ----------------cCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCC--
Q 027801 132 ----------------SGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGG-- 193 (218)
Q Consensus 132 ----------------~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~-- 193 (218)
+++|||||||||||||+|+||||||+++++|||+++|++++||+|||||++|+|||++|+|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~DAVIaLG~VIrGeT~HfeyVa~~vs~GLm~v~L~~~vPVifGVLT~~t~eQA~~RAg~~~ 171 (200)
T 1c41_A 92 SSTTDLTALPTTTASSTGPFDALIAIGVLIKGETMHFEYIADSVSHGLMRVQLDTGVPVIFGVLTVLTDDQAKARAGVIE 171 (200)
Confidence 57899999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCcHHHHHHHHHHHHHHHhhh
Q 027801 194 KSGNKGAEAALTAIEMASLFEHH 216 (218)
Q Consensus 194 k~gnKG~EAA~aAleM~~L~~~~ 216 (218)
+.+|||.|||.+|+||+.++++-
T Consensus 172 k~~NkG~eaA~aAvem~~~~~~~ 194 (200)
T 1c41_A 172 GSHNHGEDWGLAAVEMGVRRRDW 194 (200)
Confidence 88999999999999999998863
No 12
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=100.00 E-value=4.4e-50 Score=332.94 Aligned_cols=132 Identities=17% Similarity=0.129 Sum_probs=127.0
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAV 155 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~V 155 (218)
+||+||+||||+ +.|+++|+++|+++|+++ +++++||||+||||+++++|+++++|||||||||| |+|+|||||
T Consensus 3 ~ri~IV~arfn~---~~Ll~gA~~~L~~~G~~~-~i~~~~VPGafEiP~aak~la~~~~yDavIaLG~V--G~T~Hfd~V 76 (156)
T 2b99_A 3 KKVGIVDTTFAR---VDMASIAIKKLKELSPNI-KIIRKTVPGIKDLPVACKKLLEEEGCDIVMALGMP--GKAEKDKVC 76 (156)
T ss_dssp CEEEEEEESSCS---SCCHHHHHHHHHHHCTTC-EEEEEEESSGGGHHHHHHHHHHHSCCSEEEEEECC--CSSHHHHHH
T ss_pred cEEEEEEEecch---HHHHHHHHHHHHHcCCCC-eEEEEECCcHHHHHHHHHHHHhcCCCCEEEEeccc--CCcchhHHH
Confidence 699999999999 899999999999999986 48889999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh-CCCCCCcHHHHHHHHHHHHHHHhh
Q 027801 156 ANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA-GGKSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 156 a~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra-g~k~gnKG~EAA~aAleM~~L~~~ 215 (218)
|+++++|||++||++++||+|| |++|.|||++|+ +.+.+|||.|||.+|+||++++++
T Consensus 77 a~~vs~Gl~~v~L~~~vPV~~g--t~~~~eqa~~r~~g~k~~nKG~EaA~aaiem~~l~~~ 135 (156)
T 2b99_A 77 AHEASLGLMLAQLMTNKHIIEV--FVHEDEAKDDKELDWLAKRRAEEHAENVYYLLFKPEY 135 (156)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEE--ECCGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhhhCCCEEEE--eCCCHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999 778899999999999999999775
No 13
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=96.21 E-value=0.028 Score=45.88 Aligned_cols=67 Identities=7% Similarity=-0.003 Sum_probs=50.2
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEe
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG 142 (218)
.+..+||+|...+.......+++++.+.++++|+. +.++...+..+-....-..+...++||||..+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQ---VLIGNSDNDIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHTTCC---EEEEECTTCHHHHHHHHHHHHHTTCSEEEECG
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 45568999999999889999999999999999984 67777776655444333334567899999987
No 14
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=96.01 E-value=0.068 Score=43.78 Aligned_cols=69 Identities=10% Similarity=0.053 Sum_probs=53.2
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
.+..+||+|...+.......++++..+.++++|+. +.++...+..+-....-+.+...++||||..+.-
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 73 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESRGYI---GVLFDANADIEREKTLLRAIGSRGFDGLILQSFS 73 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCE---EEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSC
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 45678999999999889999999999999999973 6666666655544333333456789999998864
No 15
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=95.91 E-value=0.055 Score=44.36 Aligned_cols=67 Identities=9% Similarity=-0.086 Sum_probs=49.1
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...+.......+++++.+.++++|+. +.++...+..+-.. .++.+ ...++||||..+.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~ 73 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYE---ALVATSQNSRISEREQILEF-VHLKVDAIFITTL 73 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCE---EEEEECSSCHHHHHHHHHHH-HHTTCSEEEEECS
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCE---EEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecC
Confidence 45678999999999999999999999999999983 56665554444332 33444 3578999998876
No 16
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=95.84 E-value=0.072 Score=43.60 Aligned_cols=67 Identities=10% Similarity=-0.026 Sum_probs=48.4
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...+.......+++++.+.++++|+. +.++...+..+--. .++.+ ...++||||..+.
T Consensus 3 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~ 70 (291)
T 3l49_A 3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGT---AIALDAGRNDQTQVSQIQTL-IAQKPDAIIEQLG 70 (291)
T ss_dssp CTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHH-HHHCCSEEEEESS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCE---EEEEcCCCCHHHHHHHHHHH-HHcCCCEEEEeCC
Confidence 35578999999999888889999999999999973 55554444433222 23344 3467999997754
No 17
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=95.73 E-value=0.026 Score=46.54 Aligned_cols=67 Identities=7% Similarity=0.063 Sum_probs=49.3
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCC-eEEEEeCCcchHHHHHHHhhhcCCccEEEEEe
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEEN-IDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~-I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG 142 (218)
.+..+||+|...+....-..+++++.+.++++|+ + +.++...+..+-....-..+...++||+|..+
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~---~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGY---TALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC---EEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCC---CEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 4567899999999888899999999999999997 3 44444444444333322334567899999987
No 18
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=95.66 E-value=0.13 Score=42.90 Aligned_cols=97 Identities=16% Similarity=0.146 Sum_probs=68.8
Q ss_pred hhHhhhcccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 61 EAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 61 ~a~~~~~~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
.+++.+....+ ...||+++...-+. -....+++..+.++++|+. ++..++...-+..-++++|. .++|||+|
T Consensus 121 ~~~~~l~~~~p--g~~~I~~i~~~~~~-~~~~r~~g~~~al~~~gi~---~~~~~~~~~~~~~~~~~~l~--~~~dai~~ 192 (295)
T 3lft_A 121 QQVELIKALTP--NVKTIGALYSSSED-NSKTQVEEFKAYAEKAGLT---VETFAVPSTNEIASTVTVMT--SKVDAIWV 192 (295)
T ss_dssp HHHHHHHHHCT--TCCEEEEEEETTCH-HHHHHHHHHHHHHHHTTCE---EEEEEESSGGGHHHHHHHHT--TTCSEEEE
T ss_pred HHHHHHHHhCC--CCcEEEEEeCCCCc-chHHHHHHHHHHHHHcCCE---EEEEecCCHHHHHHHHHHHH--hcCCEEEE
Confidence 34455444332 34699999887553 3556789999999999985 55567776667777788876 47999998
Q ss_pred EeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceE
Q 027801 141 IGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 141 LG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
.. |.++-.+.+.+.+.....++||+
T Consensus 193 ~~----------D~~a~g~~~~l~~~~~~~~i~vi 217 (295)
T 3lft_A 193 PI----------DNTIASGFPTVVSSNQSSKKPIY 217 (295)
T ss_dssp CS----------CHHHHHTHHHHHHHTTTTCCCEE
T ss_pred CC----------chhHHHHHHHHHHHHHHcCCCEE
Confidence 42 34555667788888888899953
No 19
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=95.54 E-value=0.21 Score=42.64 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=62.6
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCC-CCeEEE--EeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCC
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKE-ENIDVV--WVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~-e~I~vv--~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGe 148 (218)
++..||||+.---|.-+ |...+|.+++|++.|..+ +|+++. .--|-.+ ++-.+++|. ..++|.||++|
T Consensus 6 ~~~~~igi~q~~~hp~l-d~~~~G~~~~L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~-~~~~DlIiai~------ 77 (302)
T 3lkv_A 6 AKTAKVAVSQIVEHPAL-DATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFV-GENPDVLVGIA------ 77 (302)
T ss_dssp -CCEEEEEEESCCCHHH-HHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHH-TTCCSEEEEES------
T ss_pred cCCceEEEEEeecChhH-HHHHHHHHHHHHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHH-hcCCcEEEEcC------
Confidence 67789999988778776 788999999999999643 355554 3444333 566667775 57899999875
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcC
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLT 180 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT 180 (218)
|+= ++.+.+ ...++||+|.-++
T Consensus 78 t~a--------a~a~~~--~~~~iPVVf~~v~ 99 (302)
T 3lkv_A 78 TPT--------AQALVS--ATKTIPIVFTAVT 99 (302)
T ss_dssp HHH--------HHHHHH--HCSSSCEEEEEES
T ss_pred CHH--------HHHHHh--hcCCCCeEEEecC
Confidence 332 233332 2458999998776
No 20
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=95.41 E-value=0.12 Score=43.49 Aligned_cols=124 Identities=17% Similarity=0.157 Sum_probs=81.1
Q ss_pred hHhhhcccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEE
Q 027801 62 AVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCI 141 (218)
Q Consensus 62 a~~~~~~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaL 141 (218)
+++.+...++ ...||+++...-+. -....+++..+.|+++|++ ++..++...-+..-++++|. .++|||+|.
T Consensus 129 ~~~~l~~~~P--g~~~I~~i~~~~~~-~~~~r~~g~~~al~~~gi~---~~~~~~~~~~~~~~~~~~l~--~~~dai~~~ 200 (302)
T 2qh8_A 129 HVELIKEILP--NVKSIGVVYNPGEA-NAVSLMELLKLSAAKHGIK---LVEATALKSADVQSATQAIA--EKSDVIYAL 200 (302)
T ss_dssp HHHHHHHHST--TCCEEEEEECTTCH-HHHHHHHHHHHHHHHTTCE---EEEEECSSGGGHHHHHHHHG--GGCSEEEEC
T ss_pred HHHHHHHhCC--CCcEEEEEecCCCc-chHHHHHHHHHHHHHcCCE---EEEEecCChHHHHHHHHHHh--ccCCEEEEC
Confidence 3455444332 34699999876443 3556789999999999985 56667777677777888886 379999984
Q ss_pred eeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCC------CCCCcHHHHHHHHHHHH
Q 027801 142 GAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGG------KSGNKGAEAALTAIEMA 210 (218)
Q Consensus 142 G~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~------k~gnKG~EAA~aAleM~ 210 (218)
.|.++-.+.+.+.+..++.++||+ | .++.. +.+ +. ....-|..||..+++++
T Consensus 201 ----------~D~~a~g~~~~l~~~~~~~~i~vi-g---~d~~~--~~~-~~Lttv~~~~~~~G~~Aa~~l~~~l 258 (302)
T 2qh8_A 201 ----------IDNTVASAIEGMIVAANQAKTPVF-G---AATSY--VER-GAIASLGFDYYQIGVQTADYVAAIL 258 (302)
T ss_dssp ----------SCHHHHTTHHHHHHHHHHTTCCEE-E---SSHHH--HHT-TCSEEEECCHHHHHHHHHHHHHHHH
T ss_pred ----------CcHhHHHHHHHHHHHHHHcCCCEE-E---CCHHH--HhC-CcEEEEeCCHHHHHHHHHHHHHHHH
Confidence 244555567778888888899963 3 34332 222 21 12234666666666655
No 21
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=95.38 E-value=0.04 Score=47.14 Aligned_cols=67 Identities=9% Similarity=0.014 Sum_probs=49.5
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...+....-..+++++.+.++++|+. +.++...+ .+-....-..+...++||||..+.
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQ---MLVAEANS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCE---EEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCE---EEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 45568999999998888899999999999999974 66666666 443333323334568999998876
No 22
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=95.15 E-value=0.12 Score=42.22 Aligned_cols=66 Identities=3% Similarity=-0.021 Sum_probs=50.2
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..+||+|...+.......++++..++++++|+. +.++...+..+-....-..+...++||||..++
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 80 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQGYS---MLLTSTNNNPDNERRGLENLLSQHIDGLIVEPT 80 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHHHHCCCCEEEEecc
Confidence 368999999998888889999999999999984 666666655554433322234678999998876
No 23
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=95.04 E-value=0.097 Score=43.04 Aligned_cols=69 Identities=6% Similarity=-0.039 Sum_probs=52.5
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
.+..+||+|...+.......+++++.+.++++|+. +.++...+..+-..-.-..+...++||||..+.-
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYS---VLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 56678999999998888899999999999999973 6677666655544433333456789999988763
No 24
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=94.91 E-value=0.17 Score=43.09 Aligned_cols=87 Identities=8% Similarity=0.031 Sum_probs=59.5
Q ss_pred CCEEEEEEcccCH-HHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhc-CCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNE-LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKS-GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~-~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~-~~yDaVIaLG~VIrGeT~H 151 (218)
..+|++|...+.. ..-..+++++.+.++++|+. +.++...+..+-- -.++.++.. .++||||..+. ...
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~---~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~----~~~- 74 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLD---LRILYAERDPQNTLQQARELFQGRDKPDYLMLVNE----QYV- 74 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCE---EEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECC----SSH-
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCe---EEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCc----hhh-
Confidence 5689999998876 78889999999999999984 6666555544432 245566665 79999998652 111
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
...+.+...+.++||++-
T Consensus 75 --------~~~~~~~~~~~giPvV~~ 92 (350)
T 3h75_A 75 --------APQILRLSQGSGIKLFIV 92 (350)
T ss_dssp --------HHHHHHHHTTSCCEEEEE
T ss_pred --------HHHHHHHHHhCCCcEEEE
Confidence 122333444679998863
No 25
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=94.86 E-value=0.094 Score=43.82 Aligned_cols=66 Identities=3% Similarity=-0.030 Sum_probs=48.2
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~~~yDaVIaLG~ 143 (218)
+..+||+|........-..+++++.+.++++|+. +.++...+..+--. .++.+. ..++||||..+.
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~i~~~~-~~~vdgiIi~~~ 68 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYK---TDLQYADDDIPNQLSQIENMV-TKGVKVLVIASI 68 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHH-HHTCSEEEECCS
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCE---EEEeeCCCCHHHHHHHHHHHH-HcCCCEEEEEcC
Confidence 4678999999998778888999999999999973 55655444443222 234443 357999998765
No 26
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=94.81 E-value=0.22 Score=41.79 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=55.8
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCC-CCCCeEEE--EeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCC
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSV-KEENIDVV--WVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv-~~e~I~vv--~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGe 148 (218)
++..+||||. ......-..+++|..+.|.++|. ...++.++ .--+..| ..-.+++| ...++|+||++|
T Consensus 6 ~~t~~IGvi~-~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l-~~~~vDgII~~~------ 77 (302)
T 2qh8_A 6 AKTAKVAVSQ-IVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQF-VGENPDVLVGIA------ 77 (302)
T ss_dssp -CCEEEEEEE-SSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHH-HHTCCSEEEEES------
T ss_pred cCCcEEEEEE-eccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHH-HhCCCCEEEECC------
Confidence 4567899985 45555667899999999999997 22234443 3344433 22334555 467899999876
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEc
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVL 179 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVL 179 (218)
+...+. +.+ ...++||++.-.
T Consensus 78 ~~~~~~--------~~~--~~~~iPvV~~~~ 98 (302)
T 2qh8_A 78 TPTAQA--------LVS--ATKTIPIVFTAV 98 (302)
T ss_dssp HHHHHH--------HHH--HCSSSCEEEEEE
T ss_pred hHHHHH--------HHh--cCCCcCEEEEec
Confidence 222222 112 267999998643
No 27
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=94.80 E-value=0.056 Score=44.31 Aligned_cols=68 Identities=9% Similarity=0.000 Sum_probs=49.3
Q ss_pred CCCCEEEEEEcc-----cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVAR-----FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Sr-----fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|... +.......+++++.+.++++|+. +.++...+.-+....+-+.+...++||||.++.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 78 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYA---LYMSTGETEEEIFNGVVKMVQGRQIGGIILLYS 78 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCE---EEECCCCSHHHHHHHHHHHHHTTCCCEEEESCC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCE---EEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 566789999999 88888889999999999999973 444444443343333333445688999998775
No 28
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=94.66 E-value=0.075 Score=42.91 Aligned_cols=65 Identities=11% Similarity=-0.013 Sum_probs=47.5
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~ 143 (218)
+|||+|...+.......+++++.+.++++|+. +.++..+...+.. -.++.+...+++||||..++
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~ 68 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEAGVT---LLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN 68 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHHTCE---EEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHcCCE---EEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 48999999988888889999999999999973 4444333333332 24455655555999999876
No 29
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=94.44 E-value=0.36 Score=40.22 Aligned_cols=84 Identities=14% Similarity=0.259 Sum_probs=53.2
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEE--EeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV--WVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv--~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.+|||| ...+...-..+++|..+.|.++|....++.+. .--+..| ..-.+++| ...++|+||++| +...
T Consensus 3 ~~Igvi-~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l-~~~~vDgII~~~------~~~~ 74 (295)
T 3lft_A 3 AKIGVL-QFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQL-VANGNDLVVGIA------TPAA 74 (295)
T ss_dssp EEEEEE-ECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHH-TTSSCSEEEEES------HHHH
T ss_pred eEEEEE-EccCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHH-HhcCCCEEEECC------cHHH
Confidence 479998 44555666789999999999999833355554 3333333 23344555 467899999875 2222
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEE
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
+.+ .+ ...++||++.
T Consensus 75 ~~~--------~~--~~~~iPvV~~ 89 (295)
T 3lft_A 75 QGL--------AS--ATKDLPVIMA 89 (295)
T ss_dssp HHH--------HH--HCSSSCEEEE
T ss_pred HHH--------HH--cCCCCCEEEE
Confidence 221 12 2479999985
No 30
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=94.42 E-value=0.18 Score=40.68 Aligned_cols=67 Identities=6% Similarity=0.030 Sum_probs=50.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
..+||++...+.......+++++.+.++++|+. +.++...+..+-..-.-+.+...++||+|..+.-
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARARGYQ---LLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 357999999999889999999999999999984 6666666554444333333345789999988754
No 31
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=94.36 E-value=0.21 Score=41.33 Aligned_cols=65 Identities=9% Similarity=0.073 Sum_probs=46.1
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC--CcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP--GSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP--GA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
..+||+|....+......+++++.+.++++|+. +.+.... +..+-- -.++.+. ..++||||..+.
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~ 70 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVD---LQILAPPGANDVPKQVQFIESAL-ATYPSGIATTIP 70 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCE---EEEECCSSSCCHHHHHHHHHHHH-HTCCSEEEECCC
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcE---EEEECCCCcCCHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 578999999998888889999999999999973 4444323 122222 2334443 467999998765
No 32
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=94.27 E-value=0.066 Score=43.91 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=46.6
Q ss_pred CCCCEEEEEEc-ccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVA-RFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~S-rfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||++.. .+.......+++++.+.++++|+. +.++..++..+--...-..+...++||||..+.
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYN---YNVVICPYKTDCLHLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTC---SEEEEEEECTTCGGGCGGGSTTTCCSEEEESSC
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCe---EEEEecCCCchhHHHHHHHHhccCCCEEEEecC
Confidence 56678999998 688888889999999999999985 555544433221111122335678999998765
No 33
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=94.23 E-value=0.14 Score=42.69 Aligned_cols=68 Identities=15% Similarity=0.072 Sum_probs=51.2
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...+....-..+++++.+.++++|+. +.++...+..+-..-.-..+...++||||..+.
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 80 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTD---VLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRR 80 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHTTCC---EEEEECCSTTHHHHHHHHHHHSCSSSEEEECCC
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHHHhCCCcEEEEecC
Confidence 34567999999988888889999999999999984 677777766665544434445788999999876
No 34
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=94.02 E-value=0.35 Score=39.48 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=47.7
Q ss_pred CCCCEEEEEEccc-CHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeC-CcchH---HHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARF-NELVTKLLLEGALETFKKY-SVKEENIDVVWVP-GSFEI---GVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srf-n~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VP-GA~EL---P~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...+ ....-..+++++.+.++++ |.. +.+.... ...+. --.++.+ ...++||||..+.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~---~~~~~~~~~~~~~~~~~~~i~~l-~~~~vdgiii~~~ 78 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFN---ISANITHYDPYDYNSFVATSQAV-IEEQPDGVMFAPT 78 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGC---EEEEEEEECSSCHHHHHHHHHHH-HTTCCSEEEECCS
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCC---eEEEEEcCCCCCHHHHHHHHHHH-HhcCCCEEEECCC
Confidence 5667899999998 7778889999999999998 764 6666542 22222 1223444 4578999999876
No 35
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=93.85 E-value=0.15 Score=41.76 Aligned_cols=68 Identities=9% Similarity=-0.032 Sum_probs=49.5
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC--cchHHH-HHHHhhhcCCccEEEEEeee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG--SFEIGV-VAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG--A~ELP~-aak~L~~~~~yDaVIaLG~V 144 (218)
++..+||+|........-..+++++.+.++++|+. +.++...+ ..+--. .++.+. ..++||||..+.-
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiii~~~~ 73 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVN---LRVLEAGGYPNKSRQEQQLALCT-QWGANAIILGTVD 73 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCE---EEEEECSSTTCHHHHHHHHHHHH-HHTCSEEEECCSS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCC
Confidence 45679999999998888999999999999999984 66666665 333222 233343 4679999988754
No 36
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=93.78 E-value=0.24 Score=40.92 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=50.0
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
.+..+||+|. .+....-..+++++.+.++++|+. +.++...+.-+-.-.++.| ...++||||..+.-
T Consensus 10 ~~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~ 76 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYD---VMLSAVAPSRAEKVAVQAL-MRERCEAAILLGTR 76 (289)
T ss_dssp ---CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCE---EEEEEEBTTBCHHHHHHHH-TTTTEEEEEEETCC
T ss_pred CCCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHH-HhCCCCEEEEECCC
Confidence 4567899999 888888899999999999999974 6677666655533344555 45789999998763
No 37
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=93.75 E-value=0.19 Score=41.37 Aligned_cols=64 Identities=13% Similarity=-0.017 Sum_probs=45.1
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~ 143 (218)
..+||+|........-..+++++.++++++|+. +.++.- +..+ ---.++.+.. .++||||..+.
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~-~~~~~~~~~i~~l~~-~~vdgiii~~~ 66 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE---VIKIAV-PDGEKTLNAIDSLAA-SGAKGFVICTP 66 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHTEE---EEEEEC-CSHHHHHHHHHHHHH-TTCCEEEEECS
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHcCCE---EEEeCC-CCHHHHHHHHHHHHH-cCCCEEEEeCC
Confidence 468999999998888899999999999999873 433322 2222 1123444543 56999998774
No 38
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=93.50 E-value=0.091 Score=43.37 Aligned_cols=68 Identities=16% Similarity=0.043 Sum_probs=48.5
Q ss_pred CCCCEEEEEEcccCH--HHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNE--LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~--~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...... .....+++++.+.++++|+. +.++...+.-+-...+..++.+.++||||..+.
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYH---LVVTPHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCE---EEECCBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCE---EEEecCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 566789999997654 66778999999999999973 555544444443344445556789999998764
No 39
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=93.47 E-value=0.13 Score=42.83 Aligned_cols=69 Identities=10% Similarity=0.057 Sum_probs=50.3
Q ss_pred CCCCEEEEEEcc-----cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 73 NEGLRFALVVAR-----FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 73 ~~~~RIaIV~Sr-----fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
.+..+||+|... +....-..+++++.+.++++|+. +.++...+.-+...-+-..+...++||||.++.-
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 93 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYS---TRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSL 93 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCE---EEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCB
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 455689999998 77788889999999999999973 5555444444443333344467899999998764
No 40
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=93.42 E-value=0.37 Score=40.87 Aligned_cols=68 Identities=9% Similarity=-0.030 Sum_probs=47.2
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...+....-..+++++.+.+.++|+. +.+....+..+-....-+.+...++||||..+.
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 127 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQ---MLIGNSHYDAGQELQLLRAYLQHRPDGVLITGL 127 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCC
Confidence 34567999998877777778899999999999974 555555555443333222334678999999875
No 41
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=93.30 E-value=0.33 Score=39.93 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=46.6
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...+....-..+++++.+.++++|+. +.++...+..+-- -.++.+ ...++||||..+.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYR---ILLCNTESDLARSRSCLTLL-SGKMVDGVITMDA 73 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHTHHH-HTTCCSEEEECCC
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCE---EEEEeCCCCHHHHHHHHHHH-HhCCCCEEEEeCC
Confidence 45678999999888888889999999999999973 4444333322211 223444 3578999998764
No 42
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=93.25 E-value=0.17 Score=41.93 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=49.1
Q ss_pred CCCCEEEEEEcccCHHHHH-HHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 73 NEGLRFALVVARFNELVTK-LLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~-~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
.+..+||+|...+....-. .+++++.+.++++|+. +.++...+..+-....-+.+...++||||..+.-
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKT---ILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4567899999877654455 7889999999999974 6666666555544333333456789999988864
No 43
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=93.07 E-value=0.23 Score=41.14 Aligned_cols=68 Identities=9% Similarity=-0.045 Sum_probs=49.2
Q ss_pred CCCCEEEEEEc----ccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 73 NEGLRFALVVA----RFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 73 ~~~~RIaIV~S----rfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
.+..+||+|.. .+....-..+++++.+.++++|+. +.++...+.-+. ..+.+++...++||||..+.-
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~-~~~~~~l~~~~vdGiIi~~~~ 75 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLD---LLLIPDEPGEKY-QSLIHLVETRRVDALIVAHTQ 75 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCE---EEEEEECTTCCC-HHHHHHHHHTCCSEEEECSCC
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCE---EEEEeCCChhhH-HHHHHHHHcCCCCEEEEeCCC
Confidence 45668999998 777778889999999999999984 666665542222 233344456789999998764
No 44
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=92.73 E-value=0.28 Score=40.39 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=45.2
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~ 143 (218)
++.+|++|........-..+++++.+.++++|+. +.++ .+...+.- -.++.+. ..++||||..++
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~-~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~ 70 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQALNVT---VEYR-GAAQYDIQEQITVLEQAI-AKNPAGIAISAI 70 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCE---EEEE-ECSSSCHHHHHHHHHHHH-HHCCSEEEECCS
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHcCCE---EEEe-CCCcCCHHHHHHHHHHHH-HhCCCEEEEcCC
Confidence 3578999999998888899999999999999973 3332 23333322 2234443 468999998875
No 45
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=92.68 E-value=0.12 Score=42.12 Aligned_cols=65 Identities=8% Similarity=0.031 Sum_probs=46.4
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH-HHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI-GVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL-P~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||++...+....-..+++++.++++++|+. +.++... ..+- --.++.+ ...++|||| ++.
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~-~~~~~~~~~~~l-~~~~vdgiI-~~~ 68 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYR---LSVIDSL-TSQAGTDPITSA-LSMRPDGII-IAQ 68 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCE---EEEECSS-SSCSSSCHHHHH-HTTCCSEEE-EES
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCE---EEEEeCC-CchHHHHHHHHH-HhCCCCEEE-ecC
Confidence 45678999999888888889999999999999973 5555444 2221 1233444 467899999 775
No 46
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=92.66 E-value=1.4 Score=36.08 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=68.1
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhc-CCccEEEEEeeeeeCCchhH
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKS-GKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~-~~yDaVIaLG~VIrGeT~H~ 152 (218)
...||+++....+......-.+|..+.|+++|+. ++...+.|.++ --+++.+++. .++|||+|. .
T Consensus 121 G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~---~~~~~~~~~~~-~~~~~~~l~~~~~~~ai~~~----------~ 186 (277)
T 3hs3_A 121 KIEKVLIQHWPLSLPTIRERIEAMTAEASKLKID---YLLEETPENNP-YISAQSALNKSNQFDAIITV----------N 186 (277)
T ss_dssp TCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE---EEEEECCSSCH-HHHHHHHHHTGGGCSEEECS----------S
T ss_pred CCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCC---CCCCCccCCch-HHHHHHHHcCCCCCCEEEEC----------C
Confidence 4559999998877667777779999999999985 22215678888 4455666544 679999875 3
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHH
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQ 186 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQ 186 (218)
|.++-.+.+++.+..++ +|==..|++.++.+.
T Consensus 187 d~~A~g~~~al~~~g~~--vP~di~vig~d~~~~ 218 (277)
T 3hs3_A 187 DLYAAEIIKEAKRRNLK--IPDDFQLVGYDNNIL 218 (277)
T ss_dssp HHHHHHHHHHHHHTTCC--TTTTCEEECSBCCGG
T ss_pred HHHHHHHHHHHHHcCCC--CCCceEEEeeCCcHH
Confidence 56888888888888775 332234556665543
No 47
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=92.60 E-value=0.23 Score=41.21 Aligned_cols=68 Identities=13% Similarity=0.013 Sum_probs=47.8
Q ss_pred CCCCEEEEEE-----cccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVV-----ARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~-----Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|. ..+....-..+++++.+.++++|+. +.++...+..+...-+-+.+...++||||..+.
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 77 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYG---TQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYS 77 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCE---EEECCCCSHHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCE---EEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCc
Confidence 4556899999 4455667778999999999999973 445444444444433334446789999998865
No 48
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=92.52 E-value=0.27 Score=40.87 Aligned_cols=65 Identities=8% Similarity=0.011 Sum_probs=45.3
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~~~yDaVIaLG~ 143 (218)
..+||+|...+....-..+++++.+.++++|+. +.+....+..+--. .++.+ ...++||||..+.
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~i~~l-~~~~vdgiIi~~~ 67 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAK---VFVQSANGNEETQMSQIENM-INRGVDVLVIIPY 67 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCE---EEEEECTTCHHHHHHHHHHH-HHTTCSEEEEECS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCE---EEEECCCCCHHHHHHHHHHH-HHcCCCEEEEeCC
Confidence 457999998877767778889999999999973 55555544443332 23333 3568999998875
No 49
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=92.46 E-value=0.6 Score=37.44 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=45.6
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
..+||+|........-..++++..+.++++|+. +.++...+..+-- -.++.+ ...++||+|..++
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~ 67 (255)
T 1byk_A 2 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYD---PIMMESQFSPQLVAEHLGVL-KRRNIDGVVLFGF 67 (255)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHHTCE---EEEEECTTCHHHHHHHHHHH-HTTTCCEEEEECC
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCE---EEEEeCCCcHHHHHHHHHHH-HhcCCCEEEEecC
Confidence 357999999888778889999999999999973 4444433322221 123444 4578999998875
No 50
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=92.46 E-value=0.35 Score=39.84 Aligned_cols=67 Identities=13% Similarity=-0.009 Sum_probs=47.0
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH----HHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV----VAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~----aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...+....-..+++++.+.++++|+. +.++...+..+--. .++.+. ..++||+|..+.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~ 76 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRH---VVVATGCGESTPREQALEAVRFLI-GRDCDGVVVISH 76 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCE---EEEECCCSSSCHHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCE---EEEEeCCCchhhhhhHHHHHHHHH-hcCccEEEEecC
Confidence 45568999998888888889999999999999973 44444433333222 345553 568999998775
No 51
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=92.43 E-value=0.58 Score=38.48 Aligned_cols=67 Identities=6% Similarity=0.006 Sum_probs=47.1
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH-HHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI-GVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL-P~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...+....-..+++++.+.++++|+. +.+....+..+- --.++.+. ..++||||..+.
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~ 85 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQ---LLIACSEDQPDNEMRCIEHLL-QRQVDAIIVSTS 85 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCE---EEEEcCCCCHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 45668999999888888889999999999999973 444433332221 12334443 467999998775
No 52
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=92.38 E-value=0.54 Score=38.79 Aligned_cols=67 Identities=9% Similarity=0.152 Sum_probs=46.8
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...+....-..+++++.+.++++|+. +.++...+..+-- -.++.+. ..++||||..+.
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~ 81 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMYKYN---IILSNSDQNMEKELHLLNTML-GKQVDGIVFMGG 81 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCE---EEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEecC
Confidence 45668999999988888889999999999999973 5554433332211 2234443 578999998775
No 53
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=92.36 E-value=1.2 Score=36.19 Aligned_cols=85 Identities=19% Similarity=0.119 Sum_probs=59.3
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhc-CCccEEEEEeeeeeCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKS-GKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~-~~yDaVIaLG~VIrGeT~H~ 152 (218)
..||+++....+......-++|..+.|+++|+......++..+...+-- -+++.+++. .++|||+|. .
T Consensus 131 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~----------~ 200 (292)
T 3k4h_A 131 HKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMAT----------D 200 (292)
T ss_dssp CCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEES----------S
T ss_pred CceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEEEc----------C
Confidence 3489999988776666677899999999999864433344333333322 234455544 589999975 3
Q ss_pred HHHHHHHHHHHHHhchh
Q 027801 153 DAVANSAASGVLSAGVN 169 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~ 169 (218)
|.++-.+.++|.+..++
T Consensus 201 d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 201 DLIGLGVLSALSKKGFV 217 (292)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHhCCC
Confidence 56788888999888875
No 54
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=92.31 E-value=0.41 Score=38.87 Aligned_cols=67 Identities=16% Similarity=0.038 Sum_probs=43.4
Q ss_pred CCCCEEEEEEcc--cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH-HHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVAR--FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI-GVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Sr--fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL-P~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|... +.......+++++.+.++++|+. +.++...+..+- --.++.+. ..++||||..+.
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~ 86 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQ---LLLADGKHSAEEERQAIQYLL-DLRCDAIMIYPR 86 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCE---EEEECCTTSHHHHHHHHHHHH-HTTCSEEEEECS
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHHH-hcCCCEEEEecC
Confidence 455789999988 77777888999999999999873 444433222221 12334444 468999998775
No 55
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=92.20 E-value=0.52 Score=38.35 Aligned_cols=67 Identities=7% Similarity=0.023 Sum_probs=44.7
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH-HHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI-GVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL-P~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||++...+.......+++++.+.++++|+. +.+....+..+- --.++.+. ..++||||..+.
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~ 72 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYT---LILGNAWNNLEKQRAYLSMMA-QKRVDGLLVMCS 72 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEEECS
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCe---EEEEcCCCChHHHHHHHHHHH-hCCCCEEEEEec
Confidence 45568999998888888889999999999999973 444433222221 12234443 568999998774
No 56
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=92.18 E-value=0.38 Score=38.90 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=45.1
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
..+||+|...+.......+++++.+.++++|+. +.++...+..+-- -.++.+ ...++||+|..+.
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgii~~~~ 68 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKAGYQ---LLLGYSDYSIEQEEKLLSTF-LESRPAGVVLFGS 68 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCE---ECCEECTTCHHHHHHHHHHH-HTSCCCCEEEESS
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHCCCE---EEEEcCCCCHHHHHHHHHHH-HhcCCCEEEEeCC
Confidence 458999999888888889999999999999974 4444333332222 223444 3578999998775
No 57
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=92.06 E-value=1.6 Score=35.93 Aligned_cols=125 Identities=14% Similarity=0.048 Sum_probs=76.5
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhc-CCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKS-GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~-~~yDaVIaLG~VIrGeT~H 151 (218)
...||+++....+......-++|..+.|+++|+..+...++..+...|-- -+++++++. .++|||+|.
T Consensus 125 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~---------- 194 (294)
T 3qk7_A 125 GHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIITD---------- 194 (294)
T ss_dssp TCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEES----------
T ss_pred CCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEEC----------
Confidence 44589999988776666666899999999999875443444444343432 244555544 689999985
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHh------hCCCC-CCcHHHHHHHHHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR------AGGKS-GNKGAEAALTAIEMA 210 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~R------ag~k~-gnKG~EAA~aAleM~ 210 (218)
.|.++-.+.++|.+..++ +|==..|++.++.+.+..- ..-.. ..-|..|+...++++
T Consensus 195 nd~~A~g~~~al~~~G~~--vP~di~vig~D~~~~~~~~~p~lttv~~~~~~~~g~~av~~L~~~i 258 (294)
T 3qk7_A 195 CNMLGDGVASALDKAGLL--GGEGISLIAYDGLPDDSLLDIAVTPIVQNTRTSVGKQIASMICDLL 258 (294)
T ss_dssp SHHHHHHHHHHHHHTTCS--STTSCEEEEETCSCTTCSCCSCCEEEECCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC--CCCceEEEeecCccHHhhcCCCceeEecCcHHHHHHHHHHHHHHHh
Confidence 367888888888887765 3422233344444332110 11112 234667776666655
No 58
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=92.04 E-value=1.2 Score=37.51 Aligned_cols=66 Identities=6% Similarity=0.023 Sum_probs=44.0
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||++... ....-..+++++.+.++++ |+. +.+....+..+-- -.++.+. ..++||||..+.
T Consensus 4 ~~~~~Igvi~~~-~~~~~~~~~~gi~~~a~~~~g~~---l~i~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~ 71 (325)
T 2x7x_A 4 TPHFRIGVAQCS-DDSWRHKMNDEILREAMFYNGVS---VEIRSAGDDNSKQAEDVHYFM-DEGVDLLIISAN 71 (325)
T ss_dssp --CCEEEEEESC-CSHHHHHHHHHHHHHHTTSSSCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred CCCeEEEEEecC-CCHHHHHHHHHHHHHHHHcCCcE---EEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 455689999987 6666778999999999988 873 5554444333322 2345554 467999998764
No 59
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=91.92 E-value=0.84 Score=36.95 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=67.3
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
...||+++....+......-.+|..+.|+++|+. +.. .+++.+...-+.+.|.+..++|||+|. .|
T Consensus 121 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~---~~~-~~~~~~~~~~~~~~l~~~~~~~ai~~~----------~d 186 (277)
T 3e61_A 121 KGKNVLIVHENLLIDAFHQRVQGIKYILDQQRID---YKM-LEATLLDNDKKFIDLIKELSIDSIICS----------ND 186 (277)
T ss_dssp TCCSEEEEESCTTSHHHHHHHHHHHHHHHC---C---EEE-EEGGGGGSHHHHHHHHHHHTCCEEEES----------SH
T ss_pred CCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCC---ccc-eecCCCCHHHHHHHhhcCCCCCEEEEC----------Cc
Confidence 3458999998877667777789999999999985 333 567777766666556556789999975 35
Q ss_pred HHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 154 AVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.++-.+.+.+.+..++ +|==..|++.++.+.+
T Consensus 187 ~~a~g~~~al~~~g~~--vP~di~vig~d~~~~~ 218 (277)
T 3e61_A 187 LLAINVLGIVQRYHFK--VPAEIQIIGYDNIPFS 218 (277)
T ss_dssp HHHHHHHHHHHHTTCC--TTTTCEEECSBCCGGG
T ss_pred HHHHHHHHHHHHcCCC--CCCceEEEeeCCchHH
Confidence 6788888888887765 3422345566665543
No 60
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=91.75 E-value=0.63 Score=39.26 Aligned_cols=67 Identities=16% Similarity=0.048 Sum_probs=48.8
Q ss_pred CCCCEEEEEEcc--cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVAR--FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Sr--fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|... +....-..+++++.+.++++|+. +.++...+..+--. .++.+ ...++||||..+.
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQ---LLLADGKHSAEEERQAIQYL-LDLRCDAIMIYPR 128 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCE---EEEEECTTSHHHHHHHHHHH-HHTTCSEEEECCS
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHH-HhCCCCEEEEeCC
Confidence 456689999998 78888889999999999999973 55655444444333 33444 4568999998764
No 61
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=91.64 E-value=1.5 Score=36.16 Aligned_cols=123 Identities=11% Similarity=0.065 Sum_probs=75.5
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhc----CCccEEEEEeeeeeCC
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKS----GKYTAVLCIGAVVRGD 148 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~----~~yDaVIaLG~VIrGe 148 (218)
...||+++....+......-++|..+.|+++|+. ++++...-..|-- -+++.+++. .++|||+|..
T Consensus 130 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~------ 200 (295)
T 3hcw_A 130 GVDELIFITEKGNFEVSKDRIQGFETVASQFNLD---YQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISLD------ 200 (295)
T ss_dssp CCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCE---EEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEESS------
T ss_pred CCccEEEEcCCccchhHHHHHHHHHHHHHHcCCC---eeEEeccCCHHHHHHHHHHHHhhcccCCCCcEEEECC------
Confidence 3469999998877666677789999999999985 3343333333322 234555543 2799999743
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh------CCCCCCcHHHHHHHHHHHHH
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA------GGKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra------g~k~gnKG~EAA~aAleM~~ 211 (218)
|.++-.+.++|.+..++ +|==..|++.++.+.+..-. .-....-|..|+...+++++
T Consensus 201 ----d~~A~g~~~al~~~g~~--vP~di~vig~D~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~~~i~ 263 (295)
T 3hcw_A 201 ----AMLHLAILSVLYELNIE--IPKDVMTATFNDSYLTEIASPPQTCIDIKPRMLGQQAGSAILNILK 263 (295)
T ss_dssp ----HHHHHHHHHHHHHTTCC--TTTTEEEEEECCSHHHHTSSSCCEEEECCHHHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHcCCC--CCCceEEEEeCChhHHhhCCCCeeEEEECHHHHHHHHHHHHHHHhc
Confidence 66888888888887664 45334555666655442211 01122345666666665543
No 62
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=91.47 E-value=0.76 Score=37.50 Aligned_cols=64 Identities=13% Similarity=0.100 Sum_probs=43.5
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
.+||+|...+....-..+++++.+.++++|+. +.++...+..+-- -.++.+. ..++||+|..+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~ 67 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYE---ATIFDSQNDTAKESAHFDAII-AAGYDAIIFNPT 67 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCE---EEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecC
Confidence 47999998887778888999999999999873 4444333322221 2334444 467999988764
No 63
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=91.40 E-value=0.79 Score=38.66 Aligned_cols=67 Identities=9% Similarity=0.129 Sum_probs=47.5
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||++...+....-..+++++.+.++++|+. +.+....+..+-- -.++.+. ..++||+|..+.
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~ 128 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMYKYN---MILANSDNDVEKEEKVLETFL-SKQVDGIVYMGS 128 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECSS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCE---EEEEECCCChHHHHHHHHHHH-hCCCCEEEEeCC
Confidence 45568999999888888889999999999999973 5555443333221 2344443 578999998875
No 64
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=91.37 E-value=1.3 Score=36.00 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=67.3
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhc-CCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKS-GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~-~~yDaVIaLG~VIrGeT~H 151 (218)
...||+++...-+......-.+|..+.|+++|+..+...++..+...|-. -+++++++. .++|||+|.
T Consensus 126 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~---------- 195 (289)
T 3g85_A 126 RYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCN---------- 195 (289)
T ss_dssp TCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEES----------
T ss_pred CCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEEc----------
Confidence 44689999988776666677799999999999864443444433333322 234555544 579999985
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCC--CHHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCD--NMDQAL 188 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~--n~eQA~ 188 (218)
.|.++-.+.+.+.+..++ +|==..|++.+ +.+.+.
T Consensus 196 ~d~~a~g~~~al~~~g~~--vP~di~vig~d~~~~~~~~ 232 (289)
T 3g85_A 196 SDSIALGVISVLNKRQIS--IPDDIEIVAIGMNDREYTE 232 (289)
T ss_dssp SHHHHHHHHHHHHHTTCC--TTTTCEEEEEECSCHHHHH
T ss_pred CCHHHHHHHHHHHHcCCC--CCCceEEEEeCCCCcchhh
Confidence 356888888888887765 44222344445 665543
No 65
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=91.33 E-value=1.1 Score=36.69 Aligned_cols=64 Identities=22% Similarity=0.100 Sum_probs=44.0
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
.+||+|........-..+++++.++++++|+. +.+....+..+-- -.++.+. ..++||+|..+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~ 66 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYK---IIVEDSQNDSSKELSNVEDLI-QQKVDVLLINPV 66 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcE---EEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 37999999888888889999999999999973 3333222222221 2244454 578999998653
No 66
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=90.95 E-value=0.84 Score=38.97 Aligned_cols=67 Identities=9% Similarity=0.034 Sum_probs=47.3
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~~~yDaVIaLG~ 143 (218)
.+...||+|...+....-..++++..+.++++|+. +.+....+..+--. .++.+ ...++||+|..+.
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdGiI~~~~ 135 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQ---LLLGYTAYSPEREEQLVETM-LRRRPEAMVLSYD 135 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHH-HHTCCSEEEEECS
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHH-HhCCCCEEEEeCC
Confidence 34567999999988888889999999999999984 55555544444332 23333 4578999998764
No 67
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=90.86 E-value=2.9 Score=34.34 Aligned_cols=95 Identities=5% Similarity=-0.005 Sum_probs=63.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhh-hcCCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLG-KSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~-~~~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++...-.......-.+|..+.|+++|+. + ..+.+.+... -+++.++ +..++|||+|..
T Consensus 130 ~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~---~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-------- 196 (297)
T 3rot_A 130 AKRALVLNPQPGHIGLEKRAYGIKTILQDKGIF---F--EELDVGTDPNQVQSRVKSYFKIHPETNIIFCLT-------- 196 (297)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCE---E--EEEECCSCHHHHHHHHHHHHHHCTTCCEEEESS--------
T ss_pred CceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCe---E--EEeecCCChHHHHHHHHHHHHhCCCCCEEEEcC--------
Confidence 569999988776666667789999999999874 2 2333333322 2334433 456799999853
Q ss_pred hHHHHHHHHHHHHHHhchh---cCCceEEEEcCCCCHHHHH
Q 027801 151 HYDAVANSAASGVLSAGVN---SGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~---~~vPVifGVLT~~n~eQA~ 188 (218)
|.++-.+.++|.+..+. .++.| ++.++...++
T Consensus 197 --d~~A~g~~~al~~~g~~vP~~dv~v----ig~D~~~~~~ 231 (297)
T 3rot_A 197 --SQALDPLGQMLLHPDRYDFNYQPQV----YSFDKTPNTV 231 (297)
T ss_dssp --HHHHHHHHHHHHSHHHHTCCCCCEE----EEECCCHHHH
T ss_pred --CcchHHHHHHHHhcCCccCCCceEE----EEeCCCHHHH
Confidence 66888999999998886 45544 3446555543
No 68
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=90.85 E-value=1.7 Score=35.18 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=64.6
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch---HHHHHHHhhh-cCC--ccEEEEEeeeeeC
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE---IGVVAQQLGK-SGK--YTAVLCIGAVVRG 147 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E---LP~aak~L~~-~~~--yDaVIaLG~VIrG 147 (218)
...||+++...-+ .....-.+|..+.|+++|+......+++.+.... .--+++.+++ ..+ +|||+|..
T Consensus 136 G~~~i~~i~~~~~-~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~----- 209 (298)
T 3tb6_A 136 GHTHMMGIFKADD-TQGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYN----- 209 (298)
T ss_dssp TCCSEEEEEESSS-HHHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSS-----
T ss_pred CCCcEEEEcCCCC-ccHHHHHHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeC-----
Confidence 3458999987766 4455667999999999998755544555443322 1234455554 345 99999753
Q ss_pred CchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 148 DTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 148 eT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
|.++-.+.++|.+..++ +|==..|++.++.+.+
T Consensus 210 -----d~~a~g~~~al~~~g~~--vP~di~vvg~d~~~~~ 242 (298)
T 3tb6_A 210 -----DEIALKVIDMLREMDLK--VPEDMSIVGYDDSHFA 242 (298)
T ss_dssp -----HHHHHHHHHHHHHTTCC--TTTTCEEECSBCCTHH
T ss_pred -----cHHHHHHHHHHHHcCCC--CCCceEEEecCCcHHH
Confidence 56788888888887765 3422345555655443
No 69
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=90.83 E-value=0.69 Score=39.61 Aligned_cols=67 Identities=9% Similarity=0.043 Sum_probs=46.0
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...+....-..+++++.+.++++|+. +.++...+..+-- -.++.+ ...++||+|..+.
T Consensus 64 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~ 131 (348)
T 3bil_A 64 SRSNTIGVIVPSLINHYFAAMVTEIQSTASKAGLA---TIITNSNEDATTMSGSLEFL-TSHGVDGIICVPN 131 (348)
T ss_dssp ----CEEEEESCSSSHHHHHHHHHHHHHHHHTTCC---EEEEECTTCHHHHHHHHHHH-HHTTCSCEEECCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCE---EEEEeCCCCHHHHHHHHHHH-HhCCCCEEEEeCC
Confidence 34457999999888888889999999999999984 5555544433322 233444 3568999998764
No 70
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=90.80 E-value=0.97 Score=38.70 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=43.6
Q ss_pred CCCEEEEEEc--ccCH-HHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVA--RFNE-LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~S--rfn~-~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
+..+||+|.. ..++ .....+++|..+.++++|+. +.++.....-+.--.++.|++ .++|+||+.|.
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~---~~~~~~~~~~~~~~~l~~l~~-~~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAK---CKYVTASTDAEYVPSLSAFAD-ENMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCE---EEEEECCSGGGHHHHHHHHHH-TTCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCe---EEEEeCCCHHHHHHHHHHHHH-cCCCEEEECCh
Confidence 4578999986 5555 57778888999999999873 444433222222234566654 56999998764
No 71
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=90.78 E-value=1.1 Score=37.74 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=46.2
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...+....-..+++++.+.++++|+. +.++...+..+-- -.++.+. ..++|||| .+.
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI-~~~ 124 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYT---LFLCNTDDDKEKEKTYLEVLQ-SHRVAGII-ASR 124 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEE-EET
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHHH-hCCCCEEE-ECC
Confidence 45568999999887777889999999999999973 5555444333322 2334443 56899999 775
No 72
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=90.72 E-value=0.39 Score=39.48 Aligned_cols=67 Identities=15% Similarity=0.066 Sum_probs=42.8
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEE-EeCCcchH-HHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV-WVPGSFEI-GVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv-~VPGA~EL-P~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...+....-..+++++.+.++++|+. +.+. ...+..+- --.++.+. ..++||+|..+.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~ 74 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYN---LIIVYSGSADPEEQKHALLTAI-ERPVMGILLLSI 74 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCE---EEEEC----------CHHHHHH-SSCCSEEEEESC
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCe---EEEEeCCCCCHHHHHHHHHHHH-hcCCCEEEEecc
Confidence 45568999998888778889999999999999873 4333 22222221 11234443 568999998775
No 73
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=90.68 E-value=2 Score=35.13 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=55.9
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhh-c-C-CccEEEEEeeeeeCC
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGK-S-G-KYTAVLCIGAVVRGD 148 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~-~-~-~yDaVIaLG~VIrGe 148 (218)
..||+++...-+......-.+|..+.|+++|+......++ +|.+... -+++.+++ . . ++|||+|..
T Consensus 125 ~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~------ 196 (287)
T 3bbl_A 125 HRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYIL--RGEGTFEVGRAMTLHLLDLSPERRPTAIMTLN------ 196 (287)
T ss_dssp CCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEE--ECCSSHHHHHHHHHHHHTSCTTTSCSEEEESS------
T ss_pred CCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEE--eCCCCHHHHHHHHHHHHhhCCCCCCcEEEECC------
Confidence 4589999877555555666799999999999763322233 3444432 23455655 4 4 799999853
Q ss_pred chhHHHHHHHHHHHHHHhchh
Q 027801 149 TTHYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~ 169 (218)
|.++-.+.+++.+..++
T Consensus 197 ----d~~a~g~~~al~~~G~~ 213 (287)
T 3bbl_A 197 ----DTMAIGAMAAARERGLT 213 (287)
T ss_dssp ----HHHHHHHHHHHHHTTCC
T ss_pred ----cHHHHHHHHHHHHcCCC
Confidence 56778888888887764
No 74
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=90.56 E-value=0.73 Score=39.09 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=47.8
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH-HHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV-VAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~-aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...+....-..+++++.+.++++|+. +.+....+..+--. .++.+ ...++||||..+.
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~i~~l-~~~~vdGiIi~~~ 133 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQ---PVVGVTDYLPEKEEKVLYEM-LSWRPSGVIIAGL 133 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSE---EEEEECTTCHHHHHHHHHHH-HTTCCSEEEEECS
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHH-HhCCCCEEEEECC
Confidence 44568999998887777788999999999999974 55554444444322 23333 4578999998764
No 75
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=90.52 E-value=2.1 Score=34.39 Aligned_cols=99 Identities=12% Similarity=0.074 Sum_probs=63.6
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhc-CCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~-~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++....+......-.+|..+.|+++|+..+.. +..++.+...- +++.+++. .++|||+|.
T Consensus 120 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~--------- 188 (275)
T 3d8u_A 120 FKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHF--LTTHEAPSSQLGAEGLAKLLLRDSSLNALVCS--------- 188 (275)
T ss_dssp CCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCE--EECSSCCCHHHHHHHHHHHHTTCTTCCEEEES---------
T ss_pred CCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCcc--EEEeCCCChhHHHHHHHHHHhCCCCCCEEEEc---------
Confidence 4689999987665555666799999999999863322 22356555432 23445544 579999874
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.|.++..+.+++.+..++ +|==..|++.++.+.+
T Consensus 189 -~d~~a~g~~~al~~~g~~--vP~di~vvg~d~~~~~ 222 (275)
T 3d8u_A 189 -HEEIAIGALFECHRRVLK--VPTDIAIICLEGSSMG 222 (275)
T ss_dssp -SHHHHHHHHHHHHHTTCC--TTTTCEEEESSCCHHH
T ss_pred -CcHHHHHHHHHHHHcCCC--CCCceEEEecCCchHh
Confidence 345777888888877654 4411235556665554
No 76
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=90.49 E-value=1.6 Score=35.63 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=61.9
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhh-hcCCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLG-KSGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~-~~~~yDaVIaLG~VIrGeT 149 (218)
...||+++....+......-.+|..+.|+++|+..+...++ ++.++.. -+++.++ +..++|||+|..
T Consensus 124 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~------- 194 (291)
T 3egc_A 124 GHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIA--AGGVRADNGRDGAIKVLTGADRPTALLTSS------- 194 (291)
T ss_dssp TCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEE--C------CCHHHHHHHHTC-CCCSEEEESS-------
T ss_pred CCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeE--eCCCChhHHHHHHHHHHhCCCCCcEEEECC-------
Confidence 45689999988776677778899999999999864322222 3433321 2345555 456899999754
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQ 186 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQ 186 (218)
|.++-.+.++|.+..++ +|==..|++.++.+.
T Consensus 195 ---d~~a~g~~~al~~~g~~--vP~di~vvg~d~~~~ 226 (291)
T 3egc_A 195 ---HRITEGAMQALNVLGLR--YGPDVEIVSFDNLPW 226 (291)
T ss_dssp ---HHHHHHHHHHHHHHTCC--BTTTBEEEEESCCGG
T ss_pred ---cHHHHHHHHHHHHcCCC--CCCceEEEEecCchh
Confidence 56788888888888775 332123344455443
No 77
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=90.45 E-value=1.8 Score=35.44 Aligned_cols=83 Identities=17% Similarity=0.315 Sum_probs=55.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhh-cCCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~-~~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++...-.......-++|..+.|+++|++.+...++ +|.+...- +++.+++ ..++|||+|.
T Consensus 128 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~--------- 196 (290)
T 2rgy_A 128 HRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLI--ESDFSPEGGYAATCQLLESKAPFTGLFCA--------- 196 (290)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEE--ECCSSHHHHHHHHHHHHHHTCCCSEEEES---------
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEE--ecCCChhHHHHHHHHHHhCCCCCcEEEEC---------
Confidence 4689999887554445566799999999999753322233 35454332 3345554 3579999974
Q ss_pred hHHHHHHHHHHHHHHhchh
Q 027801 151 HYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~ 169 (218)
.|.++-.+.+++.+..++
T Consensus 197 -~d~~A~g~~~al~~~G~~ 214 (290)
T 2rgy_A 197 -NDTMAVSALARFQQLGIS 214 (290)
T ss_dssp -SHHHHHHHHHHHHHTTCC
T ss_pred -CcHHHHHHHHHHHHcCCC
Confidence 356788888888887765
No 78
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=90.43 E-value=2.3 Score=34.63 Aligned_cols=84 Identities=10% Similarity=0.047 Sum_probs=55.6
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc----hHH---HHHHHhhhcCCccEEEEEeeeeeC
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF----EIG---VVAQQLGKSGKYTAVLCIGAVVRG 147 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~----ELP---~aak~L~~~~~yDaVIaLG~VIrG 147 (218)
..||+++...-+......-.+|..+.|+++|+......++..+|.| ... -+++.+++. ++|||+|..
T Consensus 122 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ai~~~~----- 195 (288)
T 2qu7_A 122 CKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSK-GIKGIVATN----- 195 (288)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHT-TCCEEEECS-----
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhc-CCCEEEECC-----
Confidence 4689999887655555666799999999999753221122115666 332 234555555 899999842
Q ss_pred CchhHHHHHHHHHHHHHHhchh
Q 027801 148 DTTHYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 148 eT~H~e~Va~~vs~gLm~lsL~ 169 (218)
|.++-.+.+.+.+..++
T Consensus 196 -----d~~a~g~~~al~~~g~~ 212 (288)
T 2qu7_A 196 -----HLLLLGALQAIKESEKE 212 (288)
T ss_dssp -----HHHHHHHHHHHHHSSCC
T ss_pred -----cHHHHHHHHHHHHhCCC
Confidence 45777788888876664
No 79
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=90.39 E-value=1.4 Score=35.99 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=44.3
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHH---HHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIG---VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP---~aak~L~~~~~yDaVIaLG~ 143 (218)
+..+||++........-..+++++.+.++++|+ ++.. .+...+.. -.++.+. ..++||||..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiii~~~ 70 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEFNL-----NASQVGPSSTDAPQQVKIIEDLI-ARKVDAITIVPN 70 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTE-----EEEEECCSSSCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHcCC-----EEEEECCCCCCHHHHHHHHHHHH-HcCCCEEEEecC
Confidence 456899999888878888999999999999985 3432 33333322 2334454 467999988764
No 80
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=90.03 E-value=0.95 Score=38.05 Aligned_cols=68 Identities=13% Similarity=-0.033 Sum_probs=47.5
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcC-CccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSG-KYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~-~yDaVIaLG~ 143 (218)
++..+||+|...+....-..+++++.+.++++|+. +.++...+..+-- -.++.+...+ ++||||..+.
T Consensus 3 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~ 72 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLP---YVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPN 72 (332)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCC---EEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred CCccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCE---EEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 45578999999888888889999999999999984 5555443333322 2345554433 2999998764
No 81
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=89.95 E-value=0.81 Score=37.94 Aligned_cols=65 Identities=8% Similarity=-0.099 Sum_probs=44.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH-HHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI-GVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL-P~aak~L~~~~~yDaVIaLG~ 143 (218)
..+||++...........+++++.+.++++|+. +.+....+..+- --.++.+. ..++||||..+.
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~---l~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~ 67 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGIT---LKIADGQQKQENQIKAVRSFV-AQGVDAIFIAPV 67 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHHTCE---EEEEECTTCHHHHHHHHHHHH-HHTCSEEEECCS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCE---EEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 368999999888888888999999999999973 444433332221 12334444 457999998764
No 82
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=89.88 E-value=0.68 Score=37.83 Aligned_cols=66 Identities=11% Similarity=0.078 Sum_probs=44.3
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||++... ....-..+++++.+.++++|+. +.++...+..+-- -.++.+. ..++||||..+.
T Consensus 6 ~~~~~Igvi~~~-~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~ 72 (288)
T 2qu7_A 6 GRSNIIAFIVPD-QNPFFTEVLTEISHECQKHHLH---VAVASSEENEDKQQDLIETFV-SQNVSAIILVPV 72 (288)
T ss_dssp -CEEEEEEEESS-CCHHHHHHHHHHHHHHGGGTCE---EEEEECTTCHHHHHHHHHHHH-HTTEEEEEECCS
T ss_pred CCCCEEEEEECC-CCchHHHHHHHHHHHHHHCCCE---EEEEeCCCCHHHHHHHHHHHH-HcCccEEEEecC
Confidence 345689999988 7677788999999999999873 4444333322221 2344443 567999998765
No 83
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=89.81 E-value=2.5 Score=34.95 Aligned_cols=102 Identities=22% Similarity=0.121 Sum_probs=66.5
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHh-----hh-cCCccEEEEEeeeee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQL-----GK-SGKYTAVLCIGAVVR 146 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L-----~~-~~~yDaVIaLG~VIr 146 (218)
...||+++....+......-++|..+.|+++|+..+...++......|-- -+++.+ ++ ..++|||+|.
T Consensus 130 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~----- 204 (303)
T 3kke_A 130 GHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVVA----- 204 (303)
T ss_dssp TCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEES-----
T ss_pred CCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEEC-----
Confidence 34589999988776667777899999999999864433344333333322 234555 54 4579999985
Q ss_pred CCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 147 GDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 147 GeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.|.++-.+.++|.+..++ +|==..|++.++.+.+
T Consensus 205 -----nd~~A~g~~~al~~~G~~--vP~di~vig~D~~~~~ 238 (303)
T 3kke_A 205 -----SVNAAVGALSTALRLGLR--VPEDLSIVGINTTWVS 238 (303)
T ss_dssp -----SHHHHHHHHHHHHHTTCC--TTTTCEEEEESCCHHH
T ss_pred -----CHHHHHHHHHHHHHcCCC--CCCceEEEEEcChhHh
Confidence 356888888888887765 4422334455655543
No 84
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=89.71 E-value=1.5 Score=37.10 Aligned_cols=67 Identities=7% Similarity=0.023 Sum_probs=46.7
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||++...+....-..+++++.+.++++|+. +.+....+..+-- -.++.|. ..++||+|..+.
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~ 123 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYT---LILGNAWNNLEKQRAYLSMMA-QKRVDGLLVMCS 123 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCE---EEEEeCCCCHHHHHHHHHHHH-cCCCCEEEEeCC
Confidence 35568999999888888889999999999999973 4444333322221 1234443 568999998765
No 85
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=89.66 E-value=3 Score=34.01 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=63.1
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEE-EeCCcchHH---HHHHHhhhc-C--CccEEEEEeeeeeC
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV-WVPGSFEIG---VVAQQLGKS-G--KYTAVLCIGAVVRG 147 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv-~VPGA~ELP---~aak~L~~~-~--~yDaVIaLG~VIrG 147 (218)
..||+++...-.......-.+|..+.|+++|.. ++.. .+.|.+... -+++.+++. . ++|||+|.
T Consensus 140 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~------ 210 (309)
T 2fvy_A 140 QIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK---TEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIAN------ 210 (309)
T ss_dssp SEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEES------
T ss_pred ceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCc---eEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEEC------
Confidence 347999987655555667789999999999975 3322 234555433 234556655 2 79999974
Q ss_pred CchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH
Q 027801 148 DTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 148 eT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~ 188 (218)
.|.++..+.+++.+.. +.+++ |++.++...+.
T Consensus 211 ----~d~~a~g~~~al~~~g-~~di~----vig~d~~~~~~ 242 (309)
T 2fvy_A 211 ----NDAMAMGAVEALKAHN-KSSIP----VFGVDALPEAL 242 (309)
T ss_dssp ----SHHHHHHHHHHHHHTT-CTTSC----EECSBCCHHHH
T ss_pred ----CchhHHHHHHHHHHcC-CCCce----EEecCCCHHHH
Confidence 3567778888888877 22566 44566655554
No 86
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=89.55 E-value=1.1 Score=36.58 Aligned_cols=64 Identities=6% Similarity=-0.054 Sum_probs=42.6
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCC-CCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSV-KEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv-~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
.+||+|...+.......+++++.+.++++|. . +.++...+..+-- -.++.+. ..++||||..+.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~---~~~~~~~~~~~~~~~~~~~~~-~~~vdgiii~~~ 68 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ---LLMNDSQNDQSKQNDQIDVLL-AKGVKALAINLV 68 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEE---EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeE---EEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 4789999888888888899999999999885 3 3333333322211 1234443 567999988654
No 87
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=89.49 E-value=1.9 Score=34.97 Aligned_cols=88 Identities=2% Similarity=-0.127 Sum_probs=55.2
Q ss_pred CCCEEEEEEc----ccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhc-CCccEEEEEeeeeeC
Q 027801 74 EGLRFALVVA----RFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKS-GKYTAVLCIGAVVRG 147 (218)
Q Consensus 74 ~~~RIaIV~S----rfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~-~~yDaVIaLG~VIrG 147 (218)
...||+++.. .-.......-.+|..+.|+++|...+...++.-....| ---+++.+++. .++|||+|..
T Consensus 134 ~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~----- 208 (304)
T 3gbv_A 134 NDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFN----- 208 (304)
T ss_dssp TCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESS-----
T ss_pred CCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcC-----
Confidence 3479999984 33445556677999999999998643333333333333 33344555544 5799999853
Q ss_pred CchhHHHHHHHHHHHHHHhchhcCCc
Q 027801 148 DTTHYDAVANSAASGVLSAGVNSGVP 173 (218)
Q Consensus 148 eT~H~e~Va~~vs~gLm~lsL~~~vP 173 (218)
|. +-.+.+++.+..+ .++.
T Consensus 209 -----d~-a~g~~~al~~~g~-~di~ 227 (304)
T 3gbv_A 209 -----SK-VYIIGEYLQQRRK-SDFS 227 (304)
T ss_dssp -----SC-THHHHHHHHHTTC-CSCE
T ss_pred -----cc-hHHHHHHHHHcCC-CCcE
Confidence 22 4457777888777 4544
No 88
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=89.49 E-value=1.6 Score=36.07 Aligned_cols=98 Identities=9% Similarity=-0.073 Sum_probs=62.9
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH-HHHHHHh-hh-cCCccEEEEEeeeeeCCch
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI-GVVAQQL-GK-SGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL-P~aak~L-~~-~~~yDaVIaLG~VIrGeT~ 150 (218)
...||+++....+......-.+|..+.|+++|+.... .+.|.+.- --+++.+ ++ ..++|||+|.
T Consensus 143 G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~--------- 209 (305)
T 3huu_A 143 GHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC----VVIKSMNDLRDFIKQYCIDASHMPSVIITS--------- 209 (305)
T ss_dssp TCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE----EEECSHHHHHHHC--------CCCSEEEES---------
T ss_pred CCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc----EEecCcHHHHHHHHHhhhcCCCCCCEEEEC---------
Confidence 3468999998877766667789999999999986432 34555553 1123344 43 4689999983
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.|.++-.+.+++.+..++ +|==..|++.++.+.+
T Consensus 210 -nd~~A~g~~~al~~~g~~--vP~di~vig~D~~~~~ 243 (305)
T 3huu_A 210 -DVMLNMQLLNVLYEYQLR--IPEDIQTATFNTSFLT 243 (305)
T ss_dssp -SHHHHHHHHHHHHHTTCC--TTTTCEEEEESCSHHH
T ss_pred -ChHHHHHHHHHHHHcCCC--CCcceEEEEECCcchh
Confidence 467888888888888775 3422234455665543
No 89
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=89.37 E-value=2.3 Score=35.81 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=59.5
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhh-hcCCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLG-KSGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~-~~~~yDaVIaLG~VIrGeT 149 (218)
...||+++....+......-++|..+.|+++|+..+...+ ++|.|... -+++.++ +..++|||+|..
T Consensus 180 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~n------- 250 (338)
T 3dbi_A 180 GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLI--ANGKWTPASGAEGVEMLLERGAKFSALVASN------- 250 (338)
T ss_dssp TCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGE--ECCCSSHHHHHHHHHHHHHTTCCCSEEEESS-------
T ss_pred CCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceE--EeCCCCHHHHHHHHHHHHcCCCCCeEEEECC-------
Confidence 4468999988766666667789999999999986433333 35555443 2344455 446799999732
Q ss_pred hhHHHHHHHHHHHHHHhchh
Q 027801 150 THYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~ 169 (218)
|.++-.+.++|.+..++
T Consensus 251 ---d~~A~g~~~al~~~G~~ 267 (338)
T 3dbi_A 251 ---DDMAIGAMKALHERGVA 267 (338)
T ss_dssp ---HHHHHHHHHHHHHTTCC
T ss_pred ---hHHHHHHHHHHHHcCCC
Confidence 56888888999888775
No 90
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=89.25 E-value=1.3 Score=36.58 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=66.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe---CCcchH---HHHHHHhhhc-CCccEEEEEeeeee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV---PGSFEI---GVVAQQLGKS-GKYTAVLCIGAVVR 146 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V---PGA~EL---P~aak~L~~~-~~yDaVIaLG~VIr 146 (218)
...||+++....+......-++|..+.|+++|+..+...++.. +-..|- .-+++.+++. .++|||+|.
T Consensus 130 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~----- 204 (301)
T 3miz_A 130 GHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIMSG----- 204 (301)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEEES-----
T ss_pred CCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEEEC-----
Confidence 3458999998877767777789999999999986444444433 222221 1345556544 589999975
Q ss_pred CCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHH
Q 027801 147 GDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMD 185 (218)
Q Consensus 147 GeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~e 185 (218)
.|.++-.+.+++.+..++ +|==..|++.++.+
T Consensus 205 -----~d~~A~g~~~al~~~g~~--vP~di~vig~D~~~ 236 (301)
T 3miz_A 205 -----NDEMAIQIYIAAMALGLR--IPQDVSIVGFDDFR 236 (301)
T ss_dssp -----SHHHHHHHHHHHHTTTCC--HHHHCEEECSBCCH
T ss_pred -----CHHHHHHHHHHHHHcCCC--CCCCeeEEEeCCcH
Confidence 356777888888877654 34223566666665
No 91
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=89.12 E-value=0.63 Score=39.18 Aligned_cols=67 Identities=6% Similarity=0.117 Sum_probs=44.2
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||++...+....-..+++++.+.++++|+. +.+....+..+-- -.++.+ ...++||+|..+.
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~ 125 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMYKYN---IILSNSDQNQDKELHLLNNM-LGKQVDGIIFMSG 125 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCE---EEEEECCSHHHHHHHHHHHT-SCCSSCCEEECCS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCE---EEEEeCCCChHHHHHHHHHH-HhCCCcEEEEecC
Confidence 45678999998877777788999999999999973 4444333322221 123444 3578999998774
No 92
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=89.06 E-value=4.5 Score=34.22 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=63.9
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC-CcchHH---HHHHHhhhcCCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-GSFEIG---VVAQQLGKSGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP-GA~ELP---~aak~L~~~~~yDaVIaLG~VIrGeT 149 (218)
...||+++...-+......=++|..+.|+++|+. ..++ |.+... -+++.+++.+++|||+|.
T Consensus 173 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~------~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~-------- 238 (333)
T 3jvd_A 173 SGMNIAALVGEESLSTTQERMRGISHAASIYGAE------VTFHFGHYSVESGEEMAQVVFNNGLPDALIVA-------- 238 (333)
T ss_dssp SSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE------EEEEECCSSHHHHHHHHHHHHHTCCCSEEEEC--------
T ss_pred CCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC------EEEecCCCCHHHHHHHHHHHhcCCCCcEEEEC--------
Confidence 4568999998866666667789999999999974 2233 555433 234555555449999984
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQ 186 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQ 186 (218)
.|.++-.+.++|.+..++ +|==..|++.++...
T Consensus 239 --nd~~A~g~~~al~~~G~~--vP~disvig~D~~~~ 271 (333)
T 3jvd_A 239 --SPRLMAGVMRAFTRLNVR--VPHDVVIGGYDDPEW 271 (333)
T ss_dssp --CHHHHHHHHHHHHHTTCC--TTTTCEEEEESCCGG
T ss_pred --CHHHHHHHHHHHHHcCCC--CCCceEEEEECChHH
Confidence 467888888999888775 342223444455543
No 93
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=88.93 E-value=0.77 Score=37.33 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=44.0
Q ss_pred CCCCEEEEEEcccC--HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC--Ccch-HHHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFN--ELVTKLLLEGALETFKKYSVKEENIDVVWVP--GSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn--~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP--GA~E-LP~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...+. ...-..+++++.+.++++|+. +.++... +..+ .--.++.+. ..++||||..+.
T Consensus 3 ~~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~ 74 (289)
T 3brs_A 3 LKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIK---LEFMAPEKEEDYLVQNELIEEAI-KRKPDVILLAAA 74 (289)
T ss_dssp --CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCE---EEECCCSSTTCHHHHHHHHHHHH-HTCCSEEEECCS
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCE---EEEecCCCCCCHHHHHHHHHHHH-HhCCCEEEEeCC
Confidence 34568999998877 777788999999999999863 3333221 2222 122345554 467999998765
No 94
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=88.71 E-value=3.3 Score=33.83 Aligned_cols=82 Identities=12% Similarity=0.015 Sum_probs=56.1
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
...||+++...-+......-.+|..+.|+++|.. ...+ ++|.|...- +++.+++. .++|||+|.
T Consensus 137 G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~---~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------- 204 (293)
T 2iks_A 137 PAETVLYLGALPELSVSFLREQGFRTAWKDDPRE---VHFL-YANSYEREAAAQLFEKWLETHPMPQALFTT-------- 204 (293)
T ss_dssp CCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCC---EEEE-EESSSCHHHHHHHHHHHTTTSCCCSEEEES--------
T ss_pred CCCEEEEEecCcccccHHHHHHHHHHHHHHcCCC---ccEE-EcCCCChhhHHHHHHHHHhcCCCCCEEEEC--------
Confidence 3468999988755555566679999999999972 3322 355555432 34455544 479999984
Q ss_pred hhHHHHHHHHHHHHHHhchh
Q 027801 150 THYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~ 169 (218)
.|.++-.+.+++.+..++
T Consensus 205 --~d~~a~g~~~al~~~g~~ 222 (293)
T 2iks_A 205 --SFALLQGVMDVTLRRDGK 222 (293)
T ss_dssp --SHHHHHHHHHHHHHHHSS
T ss_pred --ChHHHHHHHHHHHHcCCC
Confidence 356788888888887765
No 95
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=88.65 E-value=1.2 Score=36.52 Aligned_cols=84 Identities=19% Similarity=0.204 Sum_probs=57.3
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
...||+++...-.......-++|..+.|+++|+..+...+ +++.+... -+++.+++. .++|||+|..
T Consensus 126 G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~------- 196 (288)
T 3gv0_A 126 GRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDA--VTIETPLEKIRDFGQRLMQSSDRPDGIVSIS------- 196 (288)
T ss_dssp TCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCS--CCTTSCHHHHHHHHHHHTTSSSCCSEEEESC-------
T ss_pred CCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhhe--eccccchHHHHHHHHHHHhCCCCCcEEEEcC-------
Confidence 3469999988766656666779999999999975322222 34544432 334555544 5799999863
Q ss_pred hhHHHHHHHHHHHHHHhchh
Q 027801 150 THYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~ 169 (218)
|.++-.+.+.|.+..++
T Consensus 197 ---d~~A~g~~~al~~~g~~ 213 (288)
T 3gv0_A 197 ---GSSTIALVAGFEAAGVK 213 (288)
T ss_dssp ---HHHHHHHHHHHHTTTCC
T ss_pred ---cHHHHHHHHHHHHcCCC
Confidence 56788888888877764
No 96
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=88.52 E-value=3.6 Score=34.06 Aligned_cols=93 Identities=9% Similarity=0.012 Sum_probs=61.6
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeE-EEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENID-VVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~-vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
...||++|.. +......+.++..+.|+++|+. .+. ...-+|..+.--.++++.+ .+.|+|++.+.
T Consensus 134 g~~~ia~i~~--~~~~~~~~~~~~~~~l~~~g~~--v~~~~~~~~~~~~~~~~~~~l~~-~~~dav~~~~~--------- 199 (362)
T 3snr_A 134 NVKTVGYIGY--SDSYGDLWFNDLKKQGEAMGLK--IVGEERFARPDTSVAGQALKLVA-ANPDAILVGAS--------- 199 (362)
T ss_dssp TCCEEEEEEE--SSHHHHHHHHHHHHHHHHTTCE--EEEEEEECTTCSCCHHHHHHHHH-HCCSEEEEECC---------
T ss_pred CCCEEEEEec--CchHHHHHHHHHHHHHHHcCCE--EEEEeecCCCCCCHHHHHHHHHh-cCCCEEEEecC---------
Confidence 3569999954 5566788999999999999974 122 2334566666556666643 56899988653
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCCCC
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTCDN 183 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n 183 (218)
+..+-.+.+.+.+..+ .+|+ .++...++
T Consensus 200 ~~~a~~~~~~~~~~g~--~~p~-i~~~g~~~ 227 (362)
T 3snr_A 200 GTAAALPQTTLRERGY--NGLI-YQTHGAAS 227 (362)
T ss_dssp HHHHHHHHHHHHHTTC--CSEE-EECGGGCS
T ss_pred cchHHHHHHHHHHcCC--CccE-EeccCcCc
Confidence 2345566677777665 4677 55554444
No 97
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=88.33 E-value=1.7 Score=35.22 Aligned_cols=63 Identities=21% Similarity=0.095 Sum_probs=43.3
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEe
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG 142 (218)
.+||++...+....-..+++++.++++++|+. +.+....+..+-- -.++.+ ...++||+|..+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~~i~~l-~~~~vdgiIi~~ 65 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYN---LVVLDSQNNPAKELANVQDL-TVRGTKILLINP 65 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCE---EEEEECTTCHHHHHHHHHHH-TTTTEEEEEECC
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcE---EEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEeC
Confidence 47999999888888889999999999999973 4443333332221 123444 356799998765
No 98
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=88.19 E-value=2.7 Score=35.29 Aligned_cols=98 Identities=18% Similarity=0.263 Sum_probs=63.0
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
..||+++...-+......-++|..+.|+++|++.+...+ ++|.|... -+++.+++. ++|||+|.
T Consensus 180 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~--~~~~~~~~~~~~~~~~ll~~-~~~ai~~~---------- 246 (332)
T 2o20_A 180 NKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLV--FEGNYSYEQGKALAERLLER-GATSAVVS---------- 246 (332)
T ss_dssp CSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGE--ECSCCSHHHHHHHHHHHHHT-TCCEEEES----------
T ss_pred CCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhE--EeCCCCHHHHHHHHHHHhcc-CCCEEEEC----------
Confidence 468999987755444556679999999999986432222 35555433 234556666 89999984
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.|.++-.+.+++.+..++ +|==..|++.++.+.+
T Consensus 247 ~d~~A~g~~~al~~~G~~--vP~disvig~D~~~~~ 280 (332)
T 2o20_A 247 HDTVAVGLLSAMMDKGVK--VPEDFEIISGANSPIT 280 (332)
T ss_dssp CHHHHHHHHHHHHHTTCC--TTTTCEEEESSCCGGG
T ss_pred ChHHHHHHHHHHHHcCCC--CccCEEEEEeCChHHH
Confidence 356777888888877664 4422234455555543
No 99
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=88.14 E-value=3.9 Score=34.94 Aligned_cols=87 Identities=6% Similarity=0.087 Sum_probs=57.4
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC---CcchHHHHHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP---GSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP---GA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
..||++|... ........++..+.|+++|+. .....++| |..+.--+++++.+. +.|+|+|.+.
T Consensus 140 ~~~ia~i~~~--~~~~~~~~~~~~~~l~~~G~~--v~~~~~~~~~~~~~d~~~~~~~l~~~-~pdaI~~~~~-------- 206 (385)
T 1pea_A 140 GERVVFIGSD--YIYPRESNHVMRHLYRQHGGT--VLEEIYIPLYPSDDDLQRAVERIYQA-RADVVFSTVV-------- 206 (385)
T ss_dssp CSEEEEEEES--SHHHHHHHHHHHHHHHHTTCE--EEEEEEECSSCCHHHHHHHHHHHHHH-TCSEEEEECC--------
T ss_pred CcEEEEEeCC--ChHHHHHHHHHHHHHHHcCCE--EEEEEeecCCCCcchHHHHHHHHHHC-CCCEEEEecc--------
Confidence 4799999873 455677889999999999974 12223454 666665566776543 6899998642
Q ss_pred HHHHHHHHHHHHHHhchhc-CCceE
Q 027801 152 YDAVANSAASGVLSAGVNS-GVPCI 175 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~-~vPVi 175 (218)
+..+-.+.+.+.+..++. .+|++
T Consensus 207 -~~~a~~~~~~~~~~G~~~~~~~~~ 230 (385)
T 1pea_A 207 -GTGTAELYRAIARRYGDGRRPPIA 230 (385)
T ss_dssp -THHHHHHHHHHHHHHCSSCCCCEE
T ss_pred -cccHHHHHHHHHHcCCCcCCceEE
Confidence 124556666777776652 25554
No 100
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=87.97 E-value=2.9 Score=34.27 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=56.5
Q ss_pred CCEEEEEEccc-CHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 75 GLRFALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srf-n~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
..||+++.... .......-++|..+.|+++|++.....++ +|.|... -+++.+++. .++|||+|.
T Consensus 133 ~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------- 202 (289)
T 2fep_A 133 HTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVA--EGDYTYDSGLEALQHLMSLDKKPTAILSA-------- 202 (289)
T ss_dssp CSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEE--ECCSCHHHHHHHHHHHTTSSSCCSEEEES--------
T ss_pred CCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEe--eCCCCHHHHHHHHHHHHcCCCCCCEEEEC--------
Confidence 46899999876 55555666799999999999864332233 4545433 234555544 579999984
Q ss_pred hhHHHHHHHHHHHHHHhchh
Q 027801 150 THYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~ 169 (218)
.|.++-.+.+++.+..++
T Consensus 203 --~d~~A~g~~~al~~~G~~ 220 (289)
T 2fep_A 203 --TDEMALGIIHAAQDQGLS 220 (289)
T ss_dssp --SHHHHHHHHHHHHHTTCC
T ss_pred --CHHHHHHHHHHHHHcCCC
Confidence 355788888888887664
No 101
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=87.75 E-value=4.9 Score=33.88 Aligned_cols=122 Identities=18% Similarity=0.048 Sum_probs=75.3
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHH---HHHhhh-cCCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV---AQQLGK-SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~a---ak~L~~-~~~yDaVIaLG~VIrGeT 149 (218)
...||+++...-.......-.+|..+.|+++|.. ..+..+++.+...-+ ++.+++ ..++|||+|..
T Consensus 144 ~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~------- 213 (350)
T 3h75_A 144 HGIELLAFSGLKVTPAAQLRERGLRRALAEHPQV---HLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSAN------- 213 (350)
T ss_dssp CCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTTE---EEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESS-------
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCe---EEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEECC-------
Confidence 3369999988776666777789999999999862 122345666654433 334443 45799998753
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh--CC------CCCCcHHHHHHHHHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA--GG------KSGNKGAEAALTAIEMA 210 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra--g~------k~gnKG~EAA~aAleM~ 210 (218)
|.++-.+.++|.+..++ +|==..|++.++..++++.. +. ....-|..|+..+++++
T Consensus 214 ---d~~a~g~~~al~~~G~~--vP~di~vvg~d~~~~~l~~~~~~~lttv~~~~~~~G~~av~~l~~~l 277 (350)
T 3h75_A 214 ---DEMALGAMQAARELGRK--PGTDLLFSGVNSSPEALQALIDGKLSVLEAGHFTLGGWALVALHDDA 277 (350)
T ss_dssp ---HHHHHHHHHHHHHTTCC--BTTTBEEEEESCCHHHHHHHHHTSSCEEEECGGGHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHcCCC--CCCCeEEEecCCCHHHHHHHHcCCeeEEEcCchhhHHHHHHHHHHHH
Confidence 56888888888888775 22112344556666653322 21 13344555555555544
No 102
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=87.74 E-value=2.5 Score=35.66 Aligned_cols=83 Identities=20% Similarity=0.207 Sum_probs=56.1
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhc-CCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~-~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++...-+......-++|..+.|+++|+..+...+ ++|.|...- +++.+++. .++|||+|.
T Consensus 177 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~--------- 245 (340)
T 1qpz_A 177 HREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWI--VQGDFEPESGYRAMQQILSQPHRPTAVFCG--------- 245 (340)
T ss_dssp CCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGB--CCCCSSHHHHHHHHHHHHTSSSCCSEEEES---------
T ss_pred CCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhhe--EeCCCCHHHHHHHHHHHHcCCCCCcEEEEC---------
Confidence 458999987655445556679999999999976332222 356554432 34555554 579999984
Q ss_pred hHHHHHHHHHHHHHHhchh
Q 027801 151 HYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~ 169 (218)
.|.++-.+.+++.+..++
T Consensus 246 -nd~~A~g~~~al~~~G~~ 263 (340)
T 1qpz_A 246 -GDIMAMGALCAADEMGLR 263 (340)
T ss_dssp -SHHHHHHHHHHHHHTTCC
T ss_pred -CHHHHHHHHHHHHHcCCC
Confidence 356788888888887664
No 103
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=87.56 E-value=3.3 Score=33.40 Aligned_cols=96 Identities=17% Similarity=0.038 Sum_probs=64.5
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHH---HHHhhh-cCCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV---AQQLGK-SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~a---ak~L~~-~~~yDaVIaLG~VIrGeT 149 (218)
...||+++...... ...-++|..+.|+++|... ...++++.+...-+ ++.+++ ..++|||+|.
T Consensus 117 G~~~i~~i~~~~~~--~~~R~~gf~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------- 183 (280)
T 3gyb_A 117 GHTHIAHLRVGSGA--GLRRFESFEATMRAHGLEP---LSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSS-------- 183 (280)
T ss_dssp TCCSEEEECCSSHH--HHHHHHHHHHHHHHTTCCC---EECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEES--------
T ss_pred CCCeEEEEeCCCch--HHHHHHHHHHHHHHcCcCC---CcccccCCCCHHHHHHHHHHHHhCCCCCCEEEEC--------
Confidence 34589999887666 6677899999999999863 32237777765433 344443 4679999986
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQ 186 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQ 186 (218)
.|.++-.+.+++.+..++ +|==..|++.++.+.
T Consensus 184 --~d~~a~g~~~al~~~g~~--vP~di~vvg~d~~~~ 216 (280)
T 3gyb_A 184 --NDITAIGALGAARELGLR--VPEDLSIIGYDNTPL 216 (280)
T ss_dssp --SHHHHHHHHHHHHHHTCC--TTTTCEEEEESCCHH
T ss_pred --ChHHHHHHHHHHHHcCCC--CCCeeEEEEECCchH
Confidence 356788888888888775 332223455555553
No 104
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=87.53 E-value=4 Score=33.68 Aligned_cols=121 Identities=15% Similarity=0.076 Sum_probs=75.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHH---HHHHHhhhc----CCccEEEEEeeeee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIG---VVAQQLGKS----GKYTAVLCIGAVVR 146 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP---~aak~L~~~----~~yDaVIaLG~VIr 146 (218)
..||+++...-.......-.+|..+.|+++|. ++++. ++|.|... -+++.+++. .++|||+|.
T Consensus 128 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~----~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ai~~~----- 198 (306)
T 2vk2_A 128 PCNVVELQGTVGASVAIDRKKGFAEAIKNAPN----IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAH----- 198 (306)
T ss_dssp CEEEEEEECSTTCHHHHHHHHHHHHHTTTCTT----EEEEEEEECTTCHHHHHHHHHHHHHHTTTTTTCCEEEES-----
T ss_pred CCeEEEEEcCCCChhHHHHHHHHHHHHhhCCC----eEEEEeccCCCcHHHHHHHHHHHHHhCCCCCCeeEEEEC-----
Confidence 46899998875555555667999999999884 23332 35655433 234555554 479999984
Q ss_pred CCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHh--hC------CCCCCcHHHHHHHHHHHHH
Q 027801 147 GDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR--AG------GKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 147 GeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~R--ag------~k~gnKG~EAA~aAleM~~ 211 (218)
.|.++-.+.+++.+..++ +|==..|++.++...++++ .+ .....-|..|+...+++++
T Consensus 199 -----nd~~A~g~~~al~~~G~~--vP~di~vig~D~~~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~~~i~ 264 (306)
T 2vk2_A 199 -----NDDMVIGAIQAIKEAGLK--PGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKK 264 (306)
T ss_dssp -----SHHHHHHHHHHHHHTTCC--BTTTBEEEEEECCHHHHHHHHTTCCCEEEECCSCCHHHHHHHHHHHHH
T ss_pred -----CchHHHHHHHHHHHcCCC--CCCCeEEEeecCCHHHHHHHHcCCceEEEecCHHHHHHHHHHHHHHHc
Confidence 255777888888887664 3411234455665555322 11 1244678888888877664
No 105
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=87.52 E-value=2.4 Score=34.30 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=54.7
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhc-CCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-GKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~-~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++...-.......-.+|..+.|+++|+......+ ++|.+... -+++.+++. .++|||+|..
T Consensus 139 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-------- 208 (296)
T 3brq_A 139 HQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLI--ANGKWTPASGAEGVEMLLERGAKFSALVASN-------- 208 (296)
T ss_dssp CCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGE--ECCCSSHHHHHHHHHHHHTC--CCSEEEESS--------
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhE--EeCCCChhHHHHHHHHHHhCCCCCCEEEECC--------
Confidence 468999987655445566679999999999976332222 35555433 233455543 5799999742
Q ss_pred hHHHHHHHHHHHHHHhchh
Q 027801 151 HYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~ 169 (218)
|.++..+.+.+.+..++
T Consensus 209 --d~~a~g~~~al~~~g~~ 225 (296)
T 3brq_A 209 --DDMAIGAMKALHERGVA 225 (296)
T ss_dssp --HHHHHHHHHHHHHHTCC
T ss_pred --hHHHHHHHHHHHHcCCC
Confidence 45677888888887765
No 106
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=87.10 E-value=3.4 Score=33.78 Aligned_cols=96 Identities=16% Similarity=0.062 Sum_probs=62.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHH---HHHHHhhh-cCCccEEEEEeeeeeCC
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIG---VVAQQLGK-SGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP---~aak~L~~-~~~yDaVIaLG~VIrGe 148 (218)
...||+++...-+ .....-.+|..+.|+++|.. ++..++ .|.+... -+++.+++ ..++|||+|.
T Consensus 126 g~~~i~~i~~~~~-~~~~~R~~gf~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~------- 194 (305)
T 3g1w_A 126 GEGEVAVITLPNQ-LNHQERTTGFKETLEAEFPA---IEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFAT------- 194 (305)
T ss_dssp TCEEEEEEECTTC-HHHHHHHHHHHHHHHHHCTT---EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEES-------
T ss_pred CCcEEEEEeCCCc-ccHHHHHHHHHHHHHhhCCC---CEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEEC-------
Confidence 4468999987644 45666779999999999875 444333 4554433 23444444 4579999874
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.|.++-.+.+++.+..+..++.| ++.++.+++
T Consensus 195 ---~d~~a~g~~~al~~~g~~~di~v----ig~d~~~~~ 226 (305)
T 3g1w_A 195 ---EANGGVGVGDAVRLESRAGEIQI----ISFDTDKGT 226 (305)
T ss_dssp ---SHHHHHHHHHHHHHTTCTTTSEE----EEESCCHHH
T ss_pred ---CCcchhhHHHHHHhcCCCCCeEE----EEeCCCHHH
Confidence 34578888899999888744433 334555433
No 107
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=87.08 E-value=5.3 Score=32.52 Aligned_cols=98 Identities=20% Similarity=0.186 Sum_probs=62.0
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHH--hhhc-CCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQ--LGKS-GKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~--L~~~-~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++...-.......-.+|..+.|+++|++.. ++..+...+-- -+++. +++. .++|||+|.
T Consensus 124 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~--------- 191 (285)
T 3c3k_A 124 KKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS---RISYAENLDYMAGKLATFSLLKSAVKPDAIFAI--------- 191 (285)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC---EEEECSSSSHHHHHHHHHHHHSSSSCCSEEEES---------
T ss_pred CCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce---EeecCCChHHHHHHHHHHHHHcCCCCCeEEEEC---------
Confidence 46899998875544555667999999999998633 33333333322 23455 5554 479999984
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.|.++-.+.+++.+..++ +|==..|++.++...+
T Consensus 192 -~d~~A~g~~~al~~~g~~--vP~di~vvg~d~~~~~ 225 (285)
T 3c3k_A 192 -SDVLAAGAIQALTESGLS--IPQDVAVVGFDGVDIS 225 (285)
T ss_dssp -SHHHHHHHHHHHHHTTCC--TTTTCEEECSBCCGGG
T ss_pred -CHHHHHHHHHHHHHcCCC--CCCceEEEEeCChHHH
Confidence 255777888888877664 4422344555655443
No 108
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=87.03 E-value=1.4 Score=38.77 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=40.4
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
.+..+||+|.. .+...-..+++++.+.++++|+. +.++......+. ++.+ ...++||||.
T Consensus 23 ~~s~~Igvv~~-~~~~f~~~l~~gi~~~a~~~g~~---~~i~~~~~~~~~---i~~l-~~~~vDGiIi 82 (412)
T 4fe7_A 23 TKRHRITLLFN-ANKAYDRQVVEGVGEYLQASQSE---WDIFIEEDFRAR---IDKI-KDWLGDGVIA 82 (412)
T ss_dssp CCCEEEEEECC-TTSHHHHHHHHHHHHHHHHHTCC---EEEEECC-CC------------CCCSEEEE
T ss_pred CCCceEEEEeC-CcchhhHHHHHHHHHHHHhcCCC---eEEEecCCccch---hhhH-hcCCCCEEEE
Confidence 45567999996 67777788999999999999974 666665443332 3444 4578999996
No 109
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=87.00 E-value=3.9 Score=33.10 Aligned_cols=94 Identities=21% Similarity=0.213 Sum_probs=63.5
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchHHH---HHHHhhhc-CCccEEEEEeeeeeCCch
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~ELP~---aak~L~~~-~~yDaVIaLG~VIrGeT~ 150 (218)
.||+++...-.......-.+|..+.|+++ |+. +.. .+++.+...- +++.+++. .++|||+|.
T Consensus 136 ~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~---~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~--------- 202 (293)
T 3l6u_A 136 GRIVEITGTANVYTTNERHRGFLKGIENEPTLS---IVD-SVSGNYDPVTSERVMRQVIDSGIPFDAVYCH--------- 202 (293)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEE---EEE-EEECTTCHHHHHHHHHHHHHTTCCCSEEEES---------
T ss_pred ceEEEEECCCCCchHHHHHHHHHHHHHhCCCcE---Eee-eccCCCCHHHHHHHHHHHHHhCCCCCEEEEC---------
Confidence 39999997776666777789999999998 763 222 2455554443 23444443 679999975
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~ 188 (218)
.|.++-.+.+++.+..++ ++.| ++.++.+.+.
T Consensus 203 -~d~~a~g~~~al~~~g~~-di~v----ig~d~~~~~~ 234 (293)
T 3l6u_A 203 -NDDIAMGVLEALKKAKIS-GKIV----VGIDGNRAIL 234 (293)
T ss_dssp -SHHHHHHHHHHHHHTTCC-CCEE----EEEECCHHHH
T ss_pred -CchHHHHHHHHHHhCCCC-CeEE----EEecCCHHHH
Confidence 356788888999988887 5544 3445555443
No 110
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=86.74 E-value=2.4 Score=34.31 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=63.2
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCC-CCCeEEEEeCCcchHH---HHHHHhhhc-C---CccEEEEEeee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKY-SVK-EENIDVVWVPGSFEIG---VVAQQLGKS-G---KYTAVLCIGAV 144 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~-~e~I~vv~VPGA~ELP---~aak~L~~~-~---~yDaVIaLG~V 144 (218)
...||+++...-.......-++|..+.|+++ |+. .+...+ ..+.+..- -+++.+++. . ++|||+|.
T Consensus 124 g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~--- 198 (291)
T 3l49_A 124 GKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELR--DVIPNTIQSAYSNVTDMLTKYPNEGDVGAIWAC--- 198 (291)
T ss_dssp TCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBC--CCSSSHHHHHHHHHHHHHHHCCSTTSCCEEEES---
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeecc--CCCCCCHHHHHHHHHHHHHhCCCcCCcCEEEEC---
Confidence 3468999987766666667789999999998 442 111111 23433322 334555544 4 79999874
Q ss_pred eeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHH
Q 027801 145 VRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALN 189 (218)
Q Consensus 145 IrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~ 189 (218)
.|.++-.+.++|.+..++ ++.|+ +.++...+.+
T Consensus 199 -------~d~~a~g~~~al~~~g~~-di~vv----g~d~~~~~~~ 231 (291)
T 3l49_A 199 -------WDVPMIGATQALQAAGRT-DIRTY----GVDGSPEFVE 231 (291)
T ss_dssp -------SHHHHHHHHHHHHHTTCC-SCEEE----EEECCHHHHH
T ss_pred -------CCchHHHHHHHHHHcCCC-CeEEE----EecCCHHHHH
Confidence 367888899999999888 66654 3455544433
No 111
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=86.71 E-value=6.8 Score=31.63 Aligned_cols=95 Identities=19% Similarity=0.129 Sum_probs=63.4
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhh-cCCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~-~~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++...-+......=.+|..+.|+++|+. +.. ..+|.|...- +++.+++ ..++|||+|..
T Consensus 123 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~---~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~n-------- 190 (271)
T 2dri_A 123 GAKVIELQGIAGTSAARERGEGFQQAVAAHKFN---VLA-SQPADFDRIKGLNVMQNLLTAHPDVQAVFAQN-------- 190 (271)
T ss_dssp TCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCE---EEE-EEECTTCHHHHHHHHHHHHHHCTTCCEEEESS--------
T ss_pred CCeEEEEECCCCCccHhHHHHHHHHHHhcCCCE---EEE-ecCCCCCHHHHHHHHHHHHHhCCCccEEEECC--------
Confidence 369999987655445556678999999999874 221 2456555432 3344544 45799999874
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~ 188 (218)
|.++-.+.+++.+..+ .++.| ++-++.+.+.
T Consensus 191 --D~~A~g~~~al~~~g~-~dv~v----vGfD~~~~~~ 221 (271)
T 2dri_A 191 --DEMALGALRALQTAGK-SDVMV----VGFDGTPDGE 221 (271)
T ss_dssp --HHHHHHHHHHHHHHTC-CSCEE----EEEECCHHHH
T ss_pred --CcHHHHHHHHHHHcCC-CCcEE----EEecCCHHHH
Confidence 6788999999999888 35544 3445555543
No 112
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=86.45 E-value=3.9 Score=33.55 Aligned_cols=82 Identities=15% Similarity=0.045 Sum_probs=58.5
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhh-cCCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~-~~~yDaVIaLG~VIrGeT 149 (218)
...||+++....+. ....-++|..+.|+++|...+ ...++|.+..-- +++.+++ ..++|||+|.
T Consensus 125 G~~~I~~i~~~~~~-~~~~R~~Gf~~al~~~g~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------- 192 (289)
T 3k9c_A 125 GHRNIAHIDGADAP-GGADRRAGFLAAMDRHGLSAS---ATVVTGGTTETEGAEGMHTLLEMPTPPTAVVAF-------- 192 (289)
T ss_dssp TCCSEEEECCTTST-THHHHHHHHHHHHHHTTCGGG---EEEECCCSSHHHHHHHHHHHHTSSSCCSEEEES--------
T ss_pred CCCcEEEEeCCCCc-cHHHHHHHHHHHHHHCCCCCC---ccEEECCCCHHHHHHHHHHHHcCCCCCCEEEEC--------
Confidence 34589999987766 556677999999999998532 234567665443 3344554 4689999985
Q ss_pred hhHHHHHHHHHHHHHHhchh
Q 027801 150 THYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~ 169 (218)
.|.++-.+.+++.+..++
T Consensus 193 --~d~~A~g~~~al~~~g~~ 210 (289)
T 3k9c_A 193 --NDRCATGVLDLLVRSGRD 210 (289)
T ss_dssp --SHHHHHHHHHHHHHTTCC
T ss_pred --ChHHHHHHHHHHHHcCCC
Confidence 356888888889888775
No 113
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=86.41 E-value=0.57 Score=38.50 Aligned_cols=65 Identities=5% Similarity=-0.101 Sum_probs=43.1
Q ss_pred CCCEEEEEEcc-c---CHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc--hHHHHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVAR-F---NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF--EIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Sr-f---n~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~--ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
+..+||+|... + ....-..+++++.+.++++|+. +.+....+.. |.- .++.+ ...++||+|..+.
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~-~~~~l-~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYF---VLPFPFSEDRSQIDI-YRDLI-RSGNVDGFVLSSI 73 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCE---EEECCCCSSTTCCHH-HHHHH-HTTCCSEEEECSC
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCE---EEEEeCCCchHHHHH-HHHHH-HcCCCCEEEEeec
Confidence 34589999887 6 6666778999999999999873 3333222221 222 23444 4577999998764
No 114
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=86.34 E-value=2.6 Score=34.43 Aligned_cols=83 Identities=14% Similarity=0.187 Sum_probs=54.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
..||+++...-+......-.+|..+.|+++|+......+ ++|.+...- +++.+++..++|||+|.
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~ai~~~---------- 192 (290)
T 3clk_A 125 HRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWI--KPGDYSYTSGEQAMKAFGKNTDLTGIIAA---------- 192 (290)
T ss_dssp CCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGE--ECCCSSHHHHHHHHHHHCTTCCCSEEEES----------
T ss_pred CCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceE--EcCCCChhhHHHHHHHHhccCCCcEEEEC----------
Confidence 468999987654444456679999999999976322212 356554432 33444444579999984
Q ss_pred HHHHHHHHHHHHHHhchh
Q 027801 152 YDAVANSAASGVLSAGVN 169 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~ 169 (218)
.|.++-.+.+.+.+..++
T Consensus 193 ~d~~a~g~~~al~~~g~~ 210 (290)
T 3clk_A 193 SDMTAIGILNQASSFGIE 210 (290)
T ss_dssp SHHHHHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHHHHcCCC
Confidence 355777888888887664
No 115
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=86.19 E-value=3.6 Score=33.04 Aligned_cols=100 Identities=18% Similarity=0.065 Sum_probs=58.9
Q ss_pred CCEEEEEEccc-C---HHHHH-HHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhc-CCccEEEEEeeeeeC
Q 027801 75 GLRFALVVARF-N---ELVTK-LLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKS-GKYTAVLCIGAVVRG 147 (218)
Q Consensus 75 ~~RIaIV~Srf-n---~~It~-~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~-~~yDaVIaLG~VIrG 147 (218)
..||+++...- . ..... .-.+|..+.|+++|++.....++..+...+-- -+++.+++. .++|||+|.
T Consensus 114 ~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~------ 187 (276)
T 2h0a_A 114 GPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVFAG------ 187 (276)
T ss_dssp SCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEECS------
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEEEC------
Confidence 45999998765 4 33344 55789999999999864332233333233322 234555544 469999863
Q ss_pred CchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHH
Q 027801 148 DTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQ 186 (218)
Q Consensus 148 eT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQ 186 (218)
.|.++-.+.+.+.+..++ +|==..|++.++...
T Consensus 188 ----~d~~a~g~~~al~~~g~~--vP~di~vvg~d~~~~ 220 (276)
T 2h0a_A 188 ----ADQVALGVLEEAVRLGLT--PGRDVRVLGFDGHPF 220 (276)
T ss_dssp ----SHHHHHHHHHHHHTTSCT--TTTSEEEEEESCCTH
T ss_pred ----CcHHHHHHHHHHHHcCCC--CCCCeEEEEeCCCch
Confidence 356777788888776654 442223444454433
No 116
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=86.15 E-value=2.9 Score=34.31 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=44.1
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~ 143 (218)
.+||+|........-..+++++.++++++|+. +.+...+...+.- -.++.+. ..++||+|..+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiIi~~~ 68 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVS---VDIFASPSEGDFQSQLQLFEDLS-NKNYKGIAFAPL 68 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCC---EEEEECSSTTCHHHHHHHHHHHH-TSSEEEEEECCS
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCE---EEEeCCCCCCCHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 47999998888888889999999999999974 5554422222221 1234443 467999998754
No 117
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=85.73 E-value=5.9 Score=31.98 Aligned_cols=86 Identities=12% Similarity=-0.036 Sum_probs=57.3
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhh-cCCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGK-SGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~-~~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++...-+......-.+|..+.|+++|.. -..+ +++.+... -+++.+++ ..++|||+|.
T Consensus 131 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~--~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~--------- 197 (289)
T 3brs_A 131 SGKIGVISFVKNSKTAMDREEGLKIGLSDDSNK--IEAI--YYCDSNYDKAYDGTVELLTKYPDISVMVGL--------- 197 (289)
T ss_dssp SCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGG--EEEE--EECTTCHHHHHHHHHHHHHHCTTEEEEEES---------
T ss_pred CceEEEEECCCCCccHHHHHHHHHHHHHhCCCc--EEee--ecCCCCHHHHHHHHHHHHHhCCCceEEEEC---------
Confidence 569999988755555666779999999998863 1222 34444332 23344444 4579999874
Q ss_pred hHHHHHHHHHHHHHHhchhcCCce
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPC 174 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPV 174 (218)
.|.++..+.+.+.+..++.++.|
T Consensus 198 -~d~~a~g~~~al~~~G~~~di~v 220 (289)
T 3brs_A 198 -NQYSATGAARAIKDMSLEAKVKL 220 (289)
T ss_dssp -SHHHHHHHHHHHHHTTCTTTSEE
T ss_pred -CCcchHHHHHHHHhcCCCCCEEE
Confidence 25577788888888887745555
No 118
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=85.70 E-value=2.2 Score=34.61 Aligned_cols=83 Identities=20% Similarity=0.183 Sum_probs=51.9
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhc-CCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-GKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~-~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++....+......-++|..+.|+++|+...... .++|.|+.. -+++.+++. .++|||+|.
T Consensus 126 ~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~--------- 194 (289)
T 1dbq_A 126 HREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESW--IVQGDFEPESGYRAMQQILSQPHRPTAVFCG--------- 194 (289)
T ss_dssp CCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGG--BCCCCSSHHHHHHHHHHHHTSSSCCSEEEES---------
T ss_pred CCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHH--eEeCCCCHHHHHHHHHHHHhCCCCCCEEEEC---------
Confidence 45899998765544455667999999999997532221 235555432 234455543 679999985
Q ss_pred hHHHHHHHHHHHHHHhchh
Q 027801 151 HYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~ 169 (218)
.|.++..+.+.+.+..++
T Consensus 195 -~d~~a~g~~~al~~~G~~ 212 (289)
T 1dbq_A 195 -GDIMAMGALCAADEMGLR 212 (289)
T ss_dssp -CHHHHHHHHHHHHHTTCC
T ss_pred -CcHHHHHHHHHHHHcCCC
Confidence 245777888888887664
No 119
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=85.65 E-value=3.5 Score=34.52 Aligned_cols=84 Identities=17% Similarity=0.212 Sum_probs=56.1
Q ss_pred CCCEEEEEEccc-CHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhc-CCccEEEEEeeeeeCC
Q 027801 74 EGLRFALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-GKYTAVLCIGAVVRGD 148 (218)
Q Consensus 74 ~~~RIaIV~Srf-n~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~-~~yDaVIaLG~VIrGe 148 (218)
...||+++...- .......-++|..+.|+++|++.+...++ +|.|... -+++.+++. .++|||+|.
T Consensus 176 G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~ai~~~------- 246 (332)
T 2hsg_A 176 GHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIV--EGDYTYDSGIEAVEKLLEEDEKPTAIFVG------- 246 (332)
T ss_dssp TCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEE--ECCSSHHHHHHHHHHHHHSSSCCSEEEES-------
T ss_pred CCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEE--eCCCCHHHHHHHHHHHHcCCCCCeEEEEC-------
Confidence 346899998876 55555566799999999999864322233 4445433 234555554 479999973
Q ss_pred chhHHHHHHHHHHHHHHhchh
Q 027801 149 TTHYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~ 169 (218)
.|.++-.+.+++.+..++
T Consensus 247 ---nd~~A~g~~~al~~~G~~ 264 (332)
T 2hsg_A 247 ---TDEMALGVIHGAQDRGLN 264 (332)
T ss_dssp ---SHHHHHHHHHHHHHTTCC
T ss_pred ---ChHHHHHHHHHHHHcCCC
Confidence 356777788888876653
No 120
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=85.64 E-value=0.75 Score=37.46 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=42.5
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||+|...+.......+++++.+.++++|+. +.++...+..+.. .+- ++||||..+.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~------~~~-~vdgiI~~~~ 66 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYE---MIVCSGKKSHLFI------PEK-MVDGAIILDW 66 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCE---EEEEESTTTTTCC------CTT-TCSEEEEECT
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCe---EEEEeCCCCHHHH------hhc-cccEEEEecC
Confidence 55678999999888878888999999999999973 4554443322210 001 7888887764
No 121
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=85.57 E-value=6 Score=32.35 Aligned_cols=96 Identities=25% Similarity=0.313 Sum_probs=62.0
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchHHH---HHHHhhh-cCCccEEEEEeeeeeCCc
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~ELP~---aak~L~~-~~~yDaVIaLG~VIrGeT 149 (218)
..||+++...-+..-...=.+|..+.|+++ |+. +. ..++|.|...- +++.+++ ..++|||+|.
T Consensus 133 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~---~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------- 200 (288)
T 1gud_A 133 GGEVAIIEGKAGNASGEARRNGATEAFKKASQIK---LV-ASQPADWDRIKALDVATNVLQRNPNIKAIYCA-------- 200 (288)
T ss_dssp CEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEE---EE-EEEECTTCHHHHHHHHHHHHHHCTTCCEEEES--------
T ss_pred CCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcE---EE-EeecCCccHHHHHHHHHHHHHhCCCceEEEEC--------
Confidence 468999987655444445578999999987 653 21 23466665443 2344554 3579999986
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~ 188 (218)
.|.++-.+.+++.+..+..++. |++-++...+.
T Consensus 201 --nD~~A~g~~~al~~~G~~~dv~----vvGfD~~~~~~ 233 (288)
T 1gud_A 201 --NDTMAMGVAQAVANAGKTGKVL----VVGTDGIPEAR 233 (288)
T ss_dssp --SHHHHHHHHHHHHHTTCTTTSE----EEEESCCHHHH
T ss_pred --CCchHHHHHHHHHhcCCCCCeE----EEEeCCCHHHH
Confidence 4567888888888777653443 34557766553
No 122
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=85.37 E-value=3.2 Score=35.27 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=45.3
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc-ch-HHHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS-FE-IGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA-~E-LP~aak~L~~~~~yDaVIaLG~ 143 (218)
....+||+|........-..+++++.+.++++|+. +.+....+. .+ .--.++.+. ..++||+|..+.
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~l~~l~-~~~vdGiIi~~~ 127 (349)
T 1jye_A 59 KQSLLIGVATSSLALHAPSQIVAAILSRADQLGAS---VVVSMVERSGVEACKTAVHNLL-AQRVSGLIINYP 127 (349)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE---EEEEECCSSSHHHHHHHHHHHH-TTTCSCEEEESC
T ss_pred CCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCE---EEEEeCCCCcHHHHHHHHHHHH-HCCCCEEEEecC
Confidence 34568999998877677778999999999999974 555544432 22 223345554 567999998764
No 123
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=85.29 E-value=3.7 Score=34.44 Aligned_cols=87 Identities=10% Similarity=-0.024 Sum_probs=59.2
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
...||++|.. +........++..+.|+++|+. .+...+ -+|..+.--.++++.+ .+.|+|++.+.
T Consensus 150 g~~~ia~i~~--~~~~~~~~~~~~~~~l~~~G~~--v~~~~~~~~~~~d~~~~~~~l~~-~~~dai~~~~~--------- 215 (375)
T 4evq_A 150 GLKKAVTVTW--KYAAGEEMVSGFKKSFTAGKGE--VVKDITIAFPDVEFQSALAEIAS-LKPDCVYAFFS--------- 215 (375)
T ss_dssp TCCEEEEEEE--SSHHHHHHHHHHHHHHHHTTCE--EEEEEEECTTCCCCHHHHHHHHH-HCCSEEEEECC---------
T ss_pred CCcEEEEEec--CchHHHHHHHHHHHHHHHcCCe--EEEEEecCCCCccHHHHHHHHHh-cCCCEEEEecC---------
Confidence 4569999974 4556778899999999999984 222333 4576666666676643 46899998653
Q ss_pred HHHHHHHHHHHHHhchhcCCceEE
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
+..+-.+.+.+.+..++ +|++-
T Consensus 216 ~~~a~~~~~~~~~~g~~--vp~~~ 237 (375)
T 4evq_A 216 GGGALKFIKDYAAANLG--IPLWG 237 (375)
T ss_dssp THHHHHHHHHHHHTTCC--CCEEE
T ss_pred cchHHHHHHHHHHcCCC--ceEEe
Confidence 12455666777777665 78754
No 124
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=85.05 E-value=2.3 Score=36.27 Aligned_cols=65 Identities=8% Similarity=0.138 Sum_probs=41.9
Q ss_pred CCCCEEEEEEcc-----cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch--HHHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVAR-----FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE--IGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Sr-----fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E--LP~aak~L~~~~~yDaVIaLG~ 143 (218)
.+...||+|... |....-..+++++.+.++ |. ++.++......+ .--.++.+ ...++||||.++.
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~--g~---~~~~~~~~~~~~~~~~~~~~~l-~~~~vdGiIi~~~ 137 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG--DT---QLTLIPASPASSVDHVSAQQLV-NNAAVDGVVIYSV 137 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS--SC---EEEEEECCCCTTCCHHHHHHHH-HTCCCSCEEEESC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh--hC---CEEEEEcCCCccHHHHHHHHHH-HhCCCCEEEEecC
Confidence 345679999987 555566688889888887 54 366666553321 22223444 5678999998875
No 125
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=84.99 E-value=7 Score=32.85 Aligned_cols=100 Identities=16% Similarity=0.265 Sum_probs=65.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
...||+++....+... ..-++|..+.|+++|....+...+ .++.+.... +++.+++. .++|||+|..
T Consensus 177 G~~~I~~i~~~~~~~~-~~R~~Gf~~al~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~n------- 247 (339)
T 3h5o_A 177 GKRRIGFLGAQLDERV-MKRLDGYRAALDAADCRDAGLEWL-DPQPSSMQMGADMLDRALAERPDCDALFCCN------- 247 (339)
T ss_dssp TCCSEEEEEESCCHHH-HHHHHHHHHHHHHTTCCCGGGEEE-ECSCCCHHHHHHHHHHHHHHCTTCCEEEESS-------
T ss_pred CCCeEEEEeCCCCccH-HHHHHHHHHHHHHCCCCCCChheE-ecCCCCHHHHHHHHHHHHcCCCCCcEEEECC-------
Confidence 4568999998876543 455699999999999843344433 466665432 34445544 5799998742
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
|.++-.+.+++.+..++ +|==..|++.++.+.+
T Consensus 248 ---D~~A~g~~~al~~~G~~--vP~disvvgfD~~~~~ 280 (339)
T 3h5o_A 248 ---DDLAIGALARSQQLGIA--VPERLAIAGFNDLQPA 280 (339)
T ss_dssp ---HHHHHHHHHHHHHTTCC--TTTTCEEECSBCCGGG
T ss_pred ---hHHHHHHHHHHHHcCCC--CCCCEEEEEECCHHHH
Confidence 56788888888887765 4432345566665543
No 126
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=84.97 E-value=0.73 Score=37.19 Aligned_cols=62 Identities=5% Similarity=-0.045 Sum_probs=38.9
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc--hHHHHHHHhhhcCCccEEEEEee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF--EIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~--ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.||+|...+....-..+++++.+.++++|+. +.++...+.. |.- .++.+. ..++||+|..+.
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~~-~~~~l~-~~~vdgiI~~~~ 64 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQRYD---LALFPILSLARLKRY-LENTTL-AYLTDGLILASY 64 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGGTCE---EEECCCCSCCCCC-----------CCCSEEEEESC
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCE---EEEEeCCCchhhHHH-HHHHHH-hCCCCEEEEecC
Confidence 3789998888888889999999999999873 3333222221 222 234443 467999998775
No 127
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=84.90 E-value=9.9 Score=32.21 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=62.7
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhc-CCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKS-GKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~-~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++....+......=++|..+.|+++|+.. ..+ .+|.|...- +++.+++. .++|||+|.
T Consensus 179 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~--~~~--~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~--------- 245 (349)
T 1jye_A 179 HQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQP--IAE--REGDWSAMSGFQQTMQMLNEGIVPTAMLVA--------- 245 (349)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCC--SEE--EECCSSHHHHHHHHHHHHHTTCCCSEEEES---------
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCc--ccc--ccCCCChHHHHHHHHHHHhCCCCCCEEEEC---------
Confidence 4589999987665555566799999999999853 222 345554322 33444443 579999985
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.|.++-.+.++|.+..++ +|==..|++.++.+.+
T Consensus 246 -nD~~A~g~~~al~~~G~~--vP~disvvGfD~~~~~ 279 (349)
T 1jye_A 246 -NDQMALGAMRAITESGLR--VGADISVVGYDDTEDS 279 (349)
T ss_dssp -SHHHHHHHHHHHHHTTCC--BTTTBEEECSBCCGGG
T ss_pred -ChHHHHHHHHHHHHcCCC--CCCcEEEEEECCcHHH
Confidence 356788888888887664 3422245566665544
No 128
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=84.86 E-value=4.1 Score=34.37 Aligned_cols=98 Identities=17% Similarity=0.272 Sum_probs=63.5
Q ss_pred CCEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhh-cCCccEEEEEeeeeeCCc
Q 027801 75 GLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~-~~~yDaVIaLG~VIrGeT 149 (218)
..||+++..... ......=++|..+.|+++|+...... ..+|.+.... +++.+++ ..++|||+|.
T Consensus 185 ~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~--~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------- 254 (344)
T 3kjx_A 185 YRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDRE--FYSGGSALAKGREMTQAMLERSPDLDFLYYS-------- 254 (344)
T ss_dssp CCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEE--ECSSCCCHHHHHHHHHHHHHHSTTCCEEEES--------
T ss_pred CCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChhe--EEeCCCCHHHHHHHHHHHHhcCCCCCEEEEC--------
Confidence 458999998762 24445556999999999998644333 3456554432 3444554 4589999975
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQ 186 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQ 186 (218)
.|.++-.+.+++.+..++ +|==..|++.++.+.
T Consensus 255 --nd~~A~g~~~al~~~g~~--vP~disvvg~D~~~~ 287 (344)
T 3kjx_A 255 --NDMIAAGGLLYLLEQGID--IPGQIGLAGFNNVEL 287 (344)
T ss_dssp --SHHHHHHHHHHHHHTTCC--TTTTCEEECSBCCGG
T ss_pred --CHHHHHHHHHHHHHcCCC--CCCceEEEEECChHH
Confidence 356888888888887764 442234556665544
No 129
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=84.64 E-value=6.3 Score=32.06 Aligned_cols=95 Identities=20% Similarity=0.178 Sum_probs=61.9
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchHHH---HHHHhhh-cCCccEEEEEeeeeeCCc
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~ELP~---aak~L~~-~~~yDaVIaLG~VIrGeT 149 (218)
..||+++...-+......=.+|..+.|+++ |+. +. ...+|.|...- +++.+++ ..++|||+|..
T Consensus 123 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~---~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~n------- 191 (283)
T 2ioy_A 123 KGNVVELEGIPGASAARDRGKGFDEAIAKYPDIK---IV-AKQAADFDRSKGLSVMENILQAQPKIDAVFAQN------- 191 (283)
T ss_dssp CEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEE---EE-EEEECTTCHHHHHHHHHHHHHHCSCCCEEEESS-------
T ss_pred CceEEEEECCCCCccHHHHHHHHHHHHHhCCCCE---EE-eeccCCCCHHHHHHHHHHHHHhCCCccEEEECC-------
Confidence 469999987654444455568999999987 653 21 12456554432 3445554 45799999874
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~ 188 (218)
|.++-.+.+++.+..+ .++.| ++.++.+.+.
T Consensus 192 ---D~~A~g~~~al~~~G~-~di~v----iG~D~~~~~~ 222 (283)
T 2ioy_A 192 ---DEMALGAIKAIEAANR-QGIIV----VGFDGTEDAL 222 (283)
T ss_dssp ---HHHHHHHHHHHHHTTC-CCCEE----EEEECCHHHH
T ss_pred ---chHHHHHHHHHHHCCC-CCcEE----EEeCCCHHHH
Confidence 6688888899988888 46654 3445655553
No 130
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=84.39 E-value=4.2 Score=32.89 Aligned_cols=96 Identities=11% Similarity=0.150 Sum_probs=62.6
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhc--CCccEEEEEeeeeeCCc
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS--GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~--~~yDaVIaLG~VIrGeT 149 (218)
..||+++...-.......-.+|..+.|+++|++ +++ +.+.|... -+++.+++. .++|||+|.
T Consensus 118 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~---~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~-------- 184 (277)
T 3cs3_A 118 SKKVLLLSGPEKGYDSQERLAVSTRELTRFGIP---YEI--IQGDFTEPSGYAAAKKILSQPQTEPVDVFAF-------- 184 (277)
T ss_dssp CSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCC---EEE--EECCSSHHHHHHHHHHHTTSCCCSSEEEEES--------
T ss_pred CceEEEEeCCccCccHHHHHHHHHHHHHHcCCC---eeE--EeCCCChhHHHHHHHHHHhcCCCCCcEEEEc--------
Confidence 468999988765555566679999999999975 332 34555433 234555554 579999975
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.|.++-.+.+++.+..++ +|==..|++.++.+.+
T Consensus 185 --~d~~a~g~~~al~~~g~~--vP~di~vvg~d~~~~~ 218 (277)
T 3cs3_A 185 --NDEMAIGVYKYVAETNYQ--MGKDIRIIGFDNSELG 218 (277)
T ss_dssp --SHHHHHHHHHHHTTSSCC--BTTTEEEECSSCCHHH
T ss_pred --ChHHHHHHHHHHHHcCCC--CCCcEEEEEeCCcHHH
Confidence 245677777777665543 4433456777776655
No 131
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=84.32 E-value=1.8 Score=34.66 Aligned_cols=95 Identities=17% Similarity=0.076 Sum_probs=61.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhc-C-CccEEEEEeeeeeCC
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-G-KYTAVLCIGAVVRGD 148 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~-~-~yDaVIaLG~VIrGe 148 (218)
...||+++...........-.+|..+.|+++|+. +..+ ..+.+... -+++.+++. . ++|||+|.
T Consensus 119 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~---~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~------- 187 (272)
T 3o74_A 119 APRSIALIGARPELSVSQARAGGFDEALQGYTGE---VRRY-QGEAFSRECGQRLMQQLIDDLGGLPDALVTT------- 187 (272)
T ss_dssp CCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSE---EEEE-EESSSSHHHHHHHHHHHHHHHTSCCSEEEES-------
T ss_pred CCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCC---hhee-ecCCCCHHHHHHHHHHHHhcCCCCCcEEEEe-------
Confidence 4469999998776666777789999999999974 2322 34444332 234445544 4 69999985
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHH
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMD 185 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~e 185 (218)
.|.++-.+.+++.+..+ +|==..|++.++.+
T Consensus 188 ---~d~~a~g~~~al~~~g~---vp~di~vvg~d~~~ 218 (272)
T 3o74_A 188 ---SYVLLQGVFDTLQARPV---DSRQLQLGTFGDNQ 218 (272)
T ss_dssp ---SHHHHHHHHHHHHTSCG---GGCCCEEEEESCCG
T ss_pred ---CchHHHHHHHHHHHcCC---CccceEEEEeCChH
Confidence 35677777788877765 35333445555544
No 132
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=84.15 E-value=3.8 Score=32.55 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=51.6
Q ss_pred CCCEEEEEEc---ccCHHH-----HHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH-HHHHHhhhcCCccEEEEEeee
Q 027801 74 EGLRFALVVA---RFNELV-----TKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG-VVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 74 ~~~RIaIV~S---rfn~~I-----t~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP-~aak~L~~~~~yDaVIaLG~V 144 (218)
+.+|++||.. ++..++ +|.=-.-..+.|.+.|+. -++...||.-.|.- -+++.+...+++|.||+-|-+
T Consensus 14 ~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~--v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 14 KSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHK--IIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCE--EEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCE--EEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 5689999963 222221 122112345677888984 57777899988744 445555556889999999998
Q ss_pred eeCCchhHHHHHHHHH
Q 027801 145 VRGDTTHYDAVANSAA 160 (218)
Q Consensus 145 IrGeT~H~e~Va~~vs 160 (218)
|-| ++|+..+++.
T Consensus 92 --g~~-~~D~t~ea~~ 104 (178)
T 3iwt_A 92 --GYS-PTDITVETIR 104 (178)
T ss_dssp --SSS-TTCCHHHHHG
T ss_pred --ccC-CCCchHHHHH
Confidence 433 4555554443
No 133
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=84.05 E-value=1.2 Score=36.30 Aligned_cols=88 Identities=17% Similarity=0.084 Sum_probs=55.7
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHH---HHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV---AQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~a---ak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
..||+++...-.......-++|..+.|+++|+. +.. .+.+.+....+ ++.+++..++|| ||.
T Consensus 136 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~---~~~-~~~~~~~~~~~~~~~~~~l~~~~~~a-i~~---------- 200 (304)
T 3o1i_D 136 KTNIALLLGPRTRGGTKPVTTGFYEAIKNSDIH---IVD-SFWADNDKELQRNLVQRVIDMGNIDY-IVG---------- 200 (304)
T ss_dssp CEEEEEECCCC-----CHHHHHHHHTTTTBTEE---EEE-CCCCCSCHHHHHHHHHHHHHHSCCSE-EEE----------
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHhcCCCE---EEE-eecCCCcHHHHHHHHHHHHcCCCCCE-EEe----------
Confidence 568999987765555556678999999988764 221 23565554322 333446678999 652
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
.|.++-.+.++|.+..++.++.|+ |.
T Consensus 201 ~d~~a~g~~~al~~~g~~~di~vv-g~ 226 (304)
T 3o1i_D 201 SAVAIEAAISELRSADKTHDIGLV-SV 226 (304)
T ss_dssp CHHHHHHHHHHHTTTTCGGGSEEB-CS
T ss_pred cCcchHHHHHHHHhcCCCCCeEEE-Ee
Confidence 256888888999988887556554 44
No 134
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=83.67 E-value=7.8 Score=32.32 Aligned_cols=89 Identities=11% Similarity=0.035 Sum_probs=60.3
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
...||++|.. +......+.++..+.|+++|+. .+....+ +|..+.--.++++.+ .+.|+|++.+. +.
T Consensus 138 g~~~ia~i~~--~~~~g~~~~~~~~~~l~~~g~~--v~~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~~---~~---- 205 (368)
T 4eyg_A 138 GIKKVATLTS--DYAPGNDALAFFKERFTAGGGE--IVEEIKVPLANPDFAPFLQRMKD-AKPDAMFVFVP---AG---- 205 (368)
T ss_dssp TCCEEEEEEE--SSHHHHHHHHHHHHHHHHTTCE--EEEEEEECSSSCCCHHHHHHHHH-HCCSEEEEECC---TT----
T ss_pred CCCEEEEEec--CchHhHHHHHHHHHHHHHcCCE--EEEEEeCCCCCCcHHHHHHHHHh-cCCCEEEEecc---ch----
Confidence 3469999984 4556778889999999999974 2333344 466666666677654 46899998653 22
Q ss_pred HHHHHHHHHHHHHhchhcC-CceEE
Q 027801 153 DAVANSAASGVLSAGVNSG-VPCIF 176 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~-vPVif 176 (218)
.+..+.+.+.+..+... +|++.
T Consensus 206 --~a~~~~~~~~~~g~~~~~v~~~~ 228 (368)
T 4eyg_A 206 --QGGNFMKQFAERGLDKSGIKVIG 228 (368)
T ss_dssp --CHHHHHHHHHHTTGGGTTCEEEE
T ss_pred --HHHHHHHHHHHcCCCcCCceEEe
Confidence 34556677777777655 77654
No 135
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=82.98 E-value=6 Score=33.56 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=65.8
Q ss_pred CCCEEEEEEcccCHHH-HHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhh-cCCccEEEEEeeeeeCC
Q 027801 74 EGLRFALVVARFNELV-TKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGK-SGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~I-t~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~-~~~yDaVIaLG~VIrGe 148 (218)
...||+++........ ...-++|..+.|+++|+..+. .+....+.+..- -+++.+++ ..++|||+|.
T Consensus 186 G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~------- 257 (355)
T 3e3m_A 186 GFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQ-EIRLGAPPLSIEDGVAAAELILQEYPDTDCIFCV------- 257 (355)
T ss_dssp TCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCC-EEEESCSSCCHHHHHHHHHHHHHHCTTCCEEEES-------
T ss_pred CCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCc-cEEEecCCCCHHHHHHHHHHHHcCCCCCcEEEEC-------
Confidence 3458999998655432 445579999999999987432 233344444322 23444544 4689999984
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.|.++-.+.+++.+..++ +|==..|++.++.+.+
T Consensus 258 ---nD~~A~g~~~al~~~G~~--vP~disvigfD~~~~~ 291 (355)
T 3e3m_A 258 ---SDMPAFGLLSRLKSIGVA--VPEQVSVVGFGNFEVS 291 (355)
T ss_dssp ---SHHHHHHHHHHHHHHTCC--TTTTCEEECSSCCHHH
T ss_pred ---ChHHHHHHHHHHHHcCCC--CCCceEEEEECChHHH
Confidence 367888888999888764 4433456677776554
No 136
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=82.87 E-value=12 Score=31.15 Aligned_cols=85 Identities=9% Similarity=0.079 Sum_probs=57.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
..||++|.. +......+.++..+.|+++|+.. +.... -+|..+.--.++++. ..+.|+|++.+. +
T Consensus 138 ~~~iaii~~--~~~~~~~~~~~~~~~l~~~g~~v--~~~~~~~~~~~d~~~~~~~l~-~~~~d~v~~~~~---------~ 203 (356)
T 3ipc_A 138 DAKVAIIHD--KTPYGQGLADETKKAANAAGVTE--VMYEGVNVGDKDFSALISKMK-EAGVSIIYWGGL---------H 203 (356)
T ss_dssp TCCEEEEEC--SSHHHHHHHHHHHHHHHHTTCCC--SEEEECCTTCCCCHHHHHHHH-HTTCCEEEEESC---------H
T ss_pred CCEEEEEeC--CChHHHHHHHHHHHHHHHcCCEE--EEEEeeCCCCCCHHHHHHHHH-hcCCCEEEEccC---------c
Confidence 468999987 45667888999999999999863 23333 457777666777764 457899886543 1
Q ss_pred HHHHHHHHHHHHhchhcCCceE
Q 027801 154 AVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVi 175 (218)
-.+..+.+.+.+..++ +|++
T Consensus 204 ~~a~~~~~~~~~~g~~--~~~~ 223 (356)
T 3ipc_A 204 TEAGLIIRQAADQGLK--AKLV 223 (356)
T ss_dssp HHHHHHHHHHHHHTCC--CEEE
T ss_pred hHHHHHHHHHHHCCCC--CcEE
Confidence 1233566666666654 6754
No 137
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=82.04 E-value=11 Score=31.08 Aligned_cols=96 Identities=11% Similarity=0.099 Sum_probs=58.2
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
...||+++...-+......-.+|..+.|++.|+.. ..+ +++.+... -+++.+++. .++|||+|..
T Consensus 122 G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~--~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~------- 190 (313)
T 2h3h_A 122 GKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEI--VDI--LNDEEDGARAVSLAEAALNAHPDLDAFFGVY------- 190 (313)
T ss_dssp SCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEE--EEE--EECSSCHHHHHHHHHHHHHHCTTCCEEEECS-------
T ss_pred CCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEE--EEe--ecCCCCHHHHHHHHHHHHHHCcCceEEEEcC-------
Confidence 34699999987555556667799999999988741 222 34445432 233444443 5799999853
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
|.++-.+.+++.+..+-.+++ |++.++...+
T Consensus 191 ---d~~a~g~~~al~~~G~p~dv~----vvg~d~~~~~ 221 (313)
T 2h3h_A 191 ---AYNGPAQALVVKNAGKVGKVK----IVCFDTTPDI 221 (313)
T ss_dssp ---TTHHHHHHHHHHHTTCTTTSE----EEEECCCHHH
T ss_pred ---CCccHHHHHHHHHcCCCCCeE----EEEeCCCHHH
Confidence 235666777777766433333 3445555443
No 138
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=81.90 E-value=7.9 Score=32.26 Aligned_cols=86 Identities=12% Similarity=-0.004 Sum_probs=58.7
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEE-EEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDV-VWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~v-v~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
...||++|. -+......+.++..+.|+++|+.. ... ..-+|..+.--.++++.+ .+.|+|++.+-.
T Consensus 138 g~~~ia~i~--~~~~~~~~~~~~~~~~l~~~g~~v--~~~~~~~~~~~~~~~~~~~l~~-~~~d~i~~~~~~-------- 204 (358)
T 3hut_A 138 GFTSVAVIG--VTTDWGLSSAQAFRKAFELRGGAV--VVNEEVPPGNRRFDDVIDEIED-EAPQAIYLAMAY-------- 204 (358)
T ss_dssp TCCEEEEEE--ESSHHHHHHHHHHHHHHHHTTCEE--EEEEEECTTCCCCHHHHHHHHH-HCCSEEEEESCH--------
T ss_pred CCCEEEEEe--cCcHHHHHHHHHHHHHHHHcCCEE--EEEEecCCCCccHHHHHHHHHh-cCCCEEEEccCc--------
Confidence 346999997 355667888999999999999852 222 234566776667777754 568999886531
Q ss_pred HHHHHHHHHHHHHhchhcCCceE
Q 027801 153 DAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
-.+-.+.+.+.+..+ .+|++
T Consensus 205 -~~a~~~~~~~~~~g~--~~p~~ 224 (358)
T 3hut_A 205 -EDAAPFLRALRARGS--ALPVY 224 (358)
T ss_dssp -HHHHHHHHHHHHTTC--CCCEE
T ss_pred -hHHHHHHHHHHHcCC--CCcEE
Confidence 244566677777666 47764
No 139
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=81.78 E-value=16 Score=30.67 Aligned_cols=86 Identities=12% Similarity=0.092 Sum_probs=57.1
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
...||++|... ......++++..+.|+++|+.. ......-+|..+.--.++++. ..+.|+|++.+. +
T Consensus 140 g~~~iaii~~~--~~~g~~~~~~~~~~~~~~G~~v-~~~~~~~~~~~d~~~~~~~l~-~~~~d~v~~~~~---------~ 206 (364)
T 3lop_A 140 GVTRIGVLYQE--DALGKEAITGVERTLKAHALAI-TAMASYPRNTANVGPAVDKLL-AADVQAIFLGAT---------A 206 (364)
T ss_dssp TCCCEEEEEET--THHHHHHHHHHHHHHHTTTCCC-SEEEEECTTSCCCHHHHHHHH-HSCCSEEEEESC---------H
T ss_pred CCceEEEEEeC--chhhHHHHHHHHHHHHHcCCcE-EEEEEecCCCccHHHHHHHHH-hCCCCEEEEecC---------c
Confidence 34689999764 4667788999999999999863 223333467777666667764 467899988653 1
Q ss_pred HHHHHHHHHHHHhchhcCCce
Q 027801 154 AVANSAASGVLSAGVNSGVPC 174 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPV 174 (218)
-.+..+.+.+.+..+ .+|+
T Consensus 207 ~~a~~~~~~~~~~g~--~~~~ 225 (364)
T 3lop_A 207 EPAAQFVRQYRARGG--EAQL 225 (364)
T ss_dssp HHHHHHHHHHHHTTC--CCEE
T ss_pred HHHHHHHHHHHHcCC--CCeE
Confidence 234556666666655 4564
No 140
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=81.47 E-value=3.1 Score=34.96 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=71.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
..||+++...-+......-++|..+.|+++|++. +...++|.|...- +++.+++..++|||+|.
T Consensus 172 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~---~~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~---------- 238 (330)
T 3ctp_A 172 CRKILHIKGPEVFEATELRYKGFLDGARAKDLEI---DFIEFQHDFQVKMLEEDINSMKDIVNYDGIFVF---------- 238 (330)
T ss_dssp CCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCC---EEEECSSSCCGGGGGCCCTTGGGGGGSSEEEES----------
T ss_pred CCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCc---ceeEEcCCCCHHHHHHHHHHHhcCCCCcEEEEC----------
Confidence 4589999887554445566799999999999863 2223466554321 22344433579999983
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCC-------CCCCcHHHHHHHHHHHHH
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGG-------KSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~-------k~gnKG~EAA~aAleM~~ 211 (218)
.|.++-.+.+++.+..++ +|==..|++.++.+.+.. ..+ ....-|..|+...+++++
T Consensus 239 ~d~~A~g~~~al~~~G~~--vP~disvvg~D~~~~~~~-~~p~lttv~~~~~~~g~~a~~~l~~~i~ 302 (330)
T 3ctp_A 239 NDIAAATVMRALKKRGVS--IPQEVQIIGFDNSFIGEL-LYPSLTTINQPIEALAYTIIELLIKIIN 302 (330)
T ss_dssp SHHHHHHHHHHHHHTTCC--TTTTCEEECSBCCTHHHH-SSSCCBEEECCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC--CCCCeEEEEECChHHHhc-CCCCcceEECCHHHHHHHHHHHHHHHhc
Confidence 355777788888877664 442224556666555421 111 122345556655555543
No 141
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=81.46 E-value=16 Score=30.70 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=74.8
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
...||+|+...-... .....+...+.++++|+. +..+.+....|+.-+++.+. ++.|++.+.. +.
T Consensus 139 ~~k~vgvi~~~~~~~-s~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~~~~l~--~~~d~i~~~~---------d~ 203 (302)
T 3lkv_A 139 NVKSIGVVYNPGEAN-AVSLMELLKLSAAKHGIK---LVEATALKSADVQSATQAIA--EKSDVIYALI---------DN 203 (302)
T ss_dssp TCCEEEEEECTTCHH-HHHHHHHHHHHHHHTTCE---EEEEECSSGGGHHHHHHHHH--TTCSEEEECS---------CH
T ss_pred CCCEEEEEeCCCccc-HHHHHHHHHHHHHHcCCE---EEEEecCChHHHHHHHHhcc--CCeeEEEEeC---------Cc
Confidence 346899997654322 234567788888898984 77788999999999988885 5688886532 22
Q ss_pred HHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCC------CCCCcHHHHHHHHHHHH
Q 027801 154 AVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGG------KSGNKGAEAALTAIEMA 210 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~------k~gnKG~EAA~aAleM~ 210 (218)
.+. .....+..++.+.++||+-+ + +..+. .|. ....-|..||..|.+++
T Consensus 204 ~~~-~~~~~i~~~~~~~~iPv~~~-----~-~~~v~-~G~l~~~~~~~~~~G~~aa~~a~~IL 258 (302)
T 3lkv_A 204 TVA-SAIEGMIVAANQAKTPVFGA-----A-TSYVE-RGAIASLGFDYYQIGVQTADYVAAIL 258 (302)
T ss_dssp HHH-HTHHHHHHHHHHTTCCEEES-----S-HHHHH-TTCSEEEECCHHHHHHHHHHHHHHHH
T ss_pred chh-hHHHHHHHHHhhcCCceeec-----c-ccccc-CCceEEEecCHHHHHHHHHHHHHHHH
Confidence 233 35678889999999998643 1 12222 231 12234666666666654
No 142
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=81.25 E-value=8.3 Score=32.20 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=63.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchHH---HHHHHhhh--cCCccEEEEEeeeeeCC
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIG---VVAQQLGK--SGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~ELP---~aak~L~~--~~~yDaVIaLG~VIrGe 148 (218)
..||+++...-+......-.+|..+.|+++ |+. +.. .+.|.+... -+++.+++ ..++|||+|.
T Consensus 136 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~---~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~aI~~~------- 204 (332)
T 2rjo_A 136 KGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQ---LLD-FQVADWNSQKAFPIMQAWMTRFNSKIKGVWAA------- 204 (332)
T ss_dssp CEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEE---EEE-EEECTTCHHHHHHHHHHHHHHHGGGEEEEEES-------
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcE---EEe-eccCCCCHHHHHHHHHHHHHhcCCCeeEEEEC-------
Confidence 458999988765555667789999999998 764 221 134555433 23445554 3579999973
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~ 188 (218)
.|.++-.+.+++.+..++.+++ |++.++...+.
T Consensus 205 ---nd~~A~g~~~al~~~G~~~di~----vvg~D~~~~~~ 237 (332)
T 2rjo_A 205 ---NDDMALGAIEALRAEGLAGQIP----VTGMDGTQPGL 237 (332)
T ss_dssp ---SHHHHHHHHHHHHHTTCBTTBC----EECSBCCHHHH
T ss_pred ---CCchHHHHHHHHHHcCCCCCCE----EEeecCCHHHH
Confidence 3567888888998888764444 45667766654
No 143
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=81.24 E-value=3.9 Score=33.87 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=43.2
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~ 143 (218)
.+|++|...+.. .-..+++++.+.++++|+. +.++ .+...+.. -.++.+. ..++||||..+.
T Consensus 2 ~~Ig~i~~~~~~-~~~~~~~gi~~~~~~~g~~---~~~~-~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~ 66 (313)
T 2h3h_A 2 LTIGVIGKSVHP-YWSQVEQGVKAAGKALGVD---TKFF-VPQKEDINAQLQMLESFI-AEGVNGIAIAPS 66 (313)
T ss_dssp CEEEEECSCSSH-HHHHHHHHHHHHHHHHTCE---EEEE-CCSSSCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred eEEEEEeCCCcH-HHHHHHHHHHHHHHHcCCE---EEEE-CCCCCCHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 579999988888 8889999999999999873 3333 24333322 2344454 467999998765
No 144
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=81.02 E-value=8.5 Score=32.12 Aligned_cols=92 Identities=7% Similarity=-0.052 Sum_probs=61.4
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhh-cCCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGK-SGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~-~~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++....+. ....-.+|..+.|+++|. .+ .. ..++|.+..-- +++.+++ ..++|||+|.
T Consensus 175 ~~~I~~i~~~~~~-~~~~R~~Gf~~~l~~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~--------- 241 (342)
T 1jx6_A 175 HTYYSVLYFSEGY-ISDVRGDTFIHQVNRDNN-FE-LQ-SAYYTKATKQSGYDAAKASLAKHPDVDFIYAC--------- 241 (342)
T ss_dssp TCEEEEECCSTTH-HHHHHHHHHHHHHHHHHC-CE-EE-EEECCCSSHHHHHHHHHHHHHHCCCCSEEEES---------
T ss_pred CceEEEEEcCCcc-hhhHHHHHHHHHHHhCCC-cE-EE-EEecCCCCHHHHHHHHHHHHHhCCCccEEEEC---------
Confidence 5799999877664 455667999999999986 21 22 23456554332 3344554 4579999984
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMD 185 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~e 185 (218)
.|.++-.+.+++.+..+ .++. |++.++..
T Consensus 242 -nd~~A~g~~~al~~~g~-~di~----vvg~D~~~ 270 (342)
T 1jx6_A 242 -STDVALGAVDALAELGR-EDIM----INGWGGGS 270 (342)
T ss_dssp -SHHHHHHHHHHHHHHTC-TTSE----EBCSBCCH
T ss_pred -CChhHHHHHHHHHHcCC-CCcE----EEEeCCCH
Confidence 35678888888888888 4554 45666665
No 145
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=80.98 E-value=9 Score=31.52 Aligned_cols=99 Identities=19% Similarity=0.180 Sum_probs=65.3
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE--eCCcchHH---HHHHHhhhc--CCccEEEEEeeeeeCC
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW--VPGSFEIG---VVAQQLGKS--GKYTAVLCIGAVVRGD 148 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~--VPGA~ELP---~aak~L~~~--~~yDaVIaLG~VIrGe 148 (218)
.||+++...-.......-.+|..+.|+++|.. .++.++. ..+.+... -+++.+++. .++|||+|..
T Consensus 124 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~------ 196 (313)
T 3m9w_A 124 GNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDS-GKIKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVASN------ 196 (313)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHHHT-TSEEEEEEEECGGGCHHHHHHHHHHHHHHTTTCCCEEEESS------
T ss_pred CcEEEEECCCCCccHHHHHHHHHHHHHhhccC-CCEEEEeeccCCCcCHHHHHHHHHHHHHhCCCCeeEEEECC------
Confidence 39999987766666666679999999998432 1344432 25555433 334555554 5899999853
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHH
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALN 189 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~ 189 (218)
|.++-.+.++|.+..+..++ .|++.++...+..
T Consensus 197 ----d~~a~g~~~al~~~G~~~di----~vig~d~~~~~~~ 229 (313)
T 3m9w_A 197 ----DATAGGAIQALSAQGLSGKV----AISGQDADLAGIK 229 (313)
T ss_dssp ----HHHHHHHHHHHHTTTCTTTS----EECCCSCCHHHHH
T ss_pred ----CchHHHHHHHHHHcCCCCCc----EEEecCCCHHHHH
Confidence 56888888888888887344 3556676665543
No 146
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=80.71 E-value=20 Score=32.65 Aligned_cols=120 Identities=19% Similarity=0.110 Sum_probs=80.6
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc-c-h-HHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS-F-E-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA-~-E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
+|++++.- -.|.-...+.++.+|..+.|.-- +-|. . | +--+.+.+++..++|+|++. |=|....++
T Consensus 265 ~Ig~~~nG------aGlam~t~D~i~~~Gg~paNflD--vgG~a~~e~~~~al~~il~d~~v~~ilvn---i~ggi~~~d 333 (395)
T 2fp4_B 265 NIACFVNG------AGLAMATCDIIFLNGGKPANFLD--LGGGVKESQVYQAFKLLTADPKVEAILVN---IFGGIVNCA 333 (395)
T ss_dssp SEEEEESS------HHHHHHHHHHHHHTTCCBCEEEE--CCSSCCHHHHHHHHHHHHHCTTCCEEEEE---EEESSSCHH
T ss_pred eEEEEecC------chHHHHHHHHHHHcCCCcCCcEE--ECCCCCHHHHHHHHHHHhCCCCCCEEEEE---ecCCccCcH
Confidence 89888742 14444677889999987655433 3333 2 2 34456667778899999973 335667789
Q ss_pred HHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHh---hCCCCC--CcHHHHHHHHHHHH
Q 027801 154 AVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR---AGGKSG--NKGAEAALTAIEMA 210 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~R---ag~k~g--nKG~EAA~aAleM~ 210 (218)
.|++.+.+++.+++ .++||+.- |...|.+++.+. +|-..- +-=.|||+.+++++
T Consensus 334 ~vA~gii~a~~~~~--~~~Pivvr-l~G~n~~~g~~~L~~~gl~~~~~~~~~~Aa~~~v~~~ 392 (395)
T 2fp4_B 334 IIANGITKACRELE--LKVPLVVR-LEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVASV 392 (395)
T ss_dssp HHHHHHHHHHHHHT--CCSCEEEE-EEETTHHHHHHHHHHTCSCCEECSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcC--CCCeEEEE-cCCCCHHHHHHHHHHCCCceEeCCCHHHHHHHHHHHh
Confidence 99999999998874 68999974 455778776554 332222 34578888887754
No 147
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=80.45 E-value=5.5 Score=32.31 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=64.1
Q ss_pred CCCCEEEEEEcccCHHHHHHHH----------HHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEE
Q 027801 73 NEGLRFALVVARFNELVTKLLL----------EGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCI 141 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll----------~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaL 141 (218)
-..+|++|+.+- +++++.+. ....+.|++.|.. .+....||.-.| |=-+++++++..++|.||+-
T Consensus 13 ~~~~rv~IittG--de~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~--v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 13 PKSLNFYVITIS--TSRYEKLLKKEPIVDESGDIIKQLLIENGHK--IIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CCCCEEEEEEEC--HHHHHHHHTTCCCCCHHHHHHHHHHHHTTCE--EEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CCCCEEEEEEeC--cccccccccCCeEeehHHHHHHHHHHHCCCE--EEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 356899998754 11111111 2234567778874 456667999877 44556666655569999999
Q ss_pred eeeeeCCchhHHHHHHHHHH-----------HHHHhchhc---CCc-----eEEEEc
Q 027801 142 GAVVRGDTTHYDAVANSAAS-----------GVLSAGVNS---GVP-----CIFGVL 179 (218)
Q Consensus 142 G~VIrGeT~H~e~Va~~vs~-----------gLm~lsL~~---~vP-----VifGVL 179 (218)
|-+=-|+ +|++.+++.. -+-.++++- +.| .++|++
T Consensus 89 GG~s~g~---~D~t~eal~~~~~~~l~G~~~~~~~v~~~p~~~G~pa~lsr~~~G~~ 142 (178)
T 2pjk_A 89 GGTGYSP---TDITVETIRKLFDREIEGFSDVFRLVSFNDPEVKAAAYLTKASAGII 142 (178)
T ss_dssp SCCSSST---TCCHHHHHGGGCSEECHHHHHHHHHHHHTSTTTGGGGGGCCCEEEEE
T ss_pred CCCCCCC---CcchHHHHHHHhcccCcchHHHhheeeccCCCCCCcchhheeEEEEE
Confidence 9984443 4555555443 356788887 888 788876
No 148
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=80.23 E-value=11 Score=31.86 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=54.1
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
..||+++...-.......-++|..+.|+++|+.+ +.+ ++|.|...- +++.+++.+++ ||+|.
T Consensus 184 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~---~~v-~~~~~~~~~~~~~~~~ll~~~~~-ai~~~---------- 248 (348)
T 3bil_A 184 ALPIGYLSGPMDTSTGRERLEDFKAACANSKIGE---QLV-FLGGYEQSVGFEGATKLLDQGAK-TLFAG---------- 248 (348)
T ss_dssp CCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCC---CEE-ECCCSSHHHHHHHHHHHHHTTCS-EEEES----------
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcCc---cEE-EcCCCCHHHHHHHHHHHHcCCCC-EEEEc----------
Confidence 4589999877555556667799999999999832 222 356655332 34555554446 77763
Q ss_pred HHHHHHHHHHHHHHhchh
Q 027801 152 YDAVANSAASGVLSAGVN 169 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~ 169 (218)
.|.++-.+.+++.+..++
T Consensus 249 nD~~A~g~~~al~~~G~~ 266 (348)
T 3bil_A 249 DSMMTIGVIEACHKAGLV 266 (348)
T ss_dssp SHHHHHHHHHHHHHTTCC
T ss_pred ChHHHHHHHHHHHHcCCC
Confidence 466888888888887764
No 149
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=80.22 E-value=8.4 Score=34.95 Aligned_cols=121 Identities=19% Similarity=0.176 Sum_probs=79.8
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc-h-HHHHHHHhhhcCCccEEEEEeeeeeCCchhHHH
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF-E-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDA 154 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~-E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~ 154 (218)
+|++++.- -.|.-...+.++.+|..+.|.--+. -|+- | +=-+.+.+++..++|+|+.. + =|....++.
T Consensus 258 ~Ig~~~nG------aGl~m~t~D~i~~~Gg~~aNflD~g-G~a~~~~~~~~~~~il~d~~v~~ilvn--i-~ggi~~~~~ 327 (388)
T 2nu8_B 258 NIGCMVNG------AGLAMGTMDIVKLHGGEPANFLDVG-GGATKERVTEAFKIILSDDKVKAVLVN--I-FGGIVRCDL 327 (388)
T ss_dssp SEEEEESS------HHHHHHHHHHHHHTTCCBCEEEECC-SCCCHHHHHHHHHHHHTSTTCCEEEEE--E-ESCSSCHHH
T ss_pred EEEEEeCC------CchhhhhhHHHHHcCCCcCceeEec-CCCCHHHHHHHHHHHhcCCCCCEEEEE--e-cCCcCCchH
Confidence 78888632 1344456788999998665543331 2222 2 33455666777889999983 2 277778899
Q ss_pred HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh---CCCCC--CcHHHHHHHHHHHH
Q 027801 155 VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA---GGKSG--NKGAEAALTAIEMA 210 (218)
Q Consensus 155 Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra---g~k~g--nKG~EAA~aAleM~ 210 (218)
|++.+.+.+.++ +.++||+.- |...|.+++.+.- |-... +-=.+||+.+++++
T Consensus 328 vA~gii~a~~~~--~~~~pivvr-l~G~n~~~g~~~l~~~g~~~~~~~~~~~aa~~~v~~~ 385 (388)
T 2nu8_B 328 IADGIIGAVAEV--GVNVPVVVR-LEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAV 385 (388)
T ss_dssp HHHHHHHHHHHH--TCCSCEEEE-EESTTHHHHHHHHHTTCSSEEECSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc--CCCCeEEEE-eCCCCHHHHHHHHHHCCCceecCCCHHHHHHHHHHHh
Confidence 999999888886 468999984 4557788875543 22211 33477888877764
No 150
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=80.09 E-value=5.8 Score=33.16 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=44.7
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHH---HHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGV---VAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~---aak~L~~~~~yDaVIaLG~ 143 (218)
+..+||++........-..+++++.+.++++|+ ++... |...+..- .++.|+ ..++||+|..+.
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~-----~~~~~~~~~~d~~~q~~~i~~li-~~~vdgiii~~~ 69 (316)
T 1tjy_A 2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGI-----DVTYDGPTEPSVSGQVQLVNNFV-NQGYDAIIVSAV 69 (316)
T ss_dssp CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTC-----EEEECCCSSCCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHhCC-----EEEEECCCCCCHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 346899999888777788899999999999886 34433 44444332 234454 467999987653
No 151
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=79.20 E-value=6.7 Score=31.23 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=62.4
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchHHHH---HHHhhhc-CCccEEEEEeeeeeCC
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIGVV---AQQLGKS-GKYTAVLCIGAVVRGD 148 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~ELP~a---ak~L~~~-~~yDaVIaLG~VIrGe 148 (218)
...||+++....+......-.+|..+.|+++ |+. +. ..+++.+...-+ ++.+++. .++|||+|.
T Consensus 126 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~------- 194 (276)
T 3ksm_A 126 KERNIALLRLRAGNASTDQREQGFLDVLRKHDKIR---II-AAPYAGDDRGAARSEMLRLLKETPTIDGLFTP------- 194 (276)
T ss_dssp SCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEE---EE-ECCBCCSSHHHHHHHHHHHHHHCSCCCEEECC-------
T ss_pred CCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcE---EE-EEecCCCcHHHHHHHHHHHHHhCCCceEEEEC-------
Confidence 4568999988766666777789999999988 653 22 235566654433 3444443 579999864
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.|.++-.+.+++.+..+-.++ .|++.++.+.+
T Consensus 195 ---~d~~a~g~~~al~~~g~p~di----~vig~d~~~~~ 226 (276)
T 3ksm_A 195 ---NESTTIGALVAIRQSGMSKQF----GFIGFDQTEEL 226 (276)
T ss_dssp ---SHHHHHHHHHHHHHTTCTTSS----EEEEESCCHHH
T ss_pred ---CchhhhHHHHHHHHcCCCCCe----EEEEeCCCHHH
Confidence 455777778888877762222 34455666555
No 152
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=79.19 E-value=7.7 Score=32.97 Aligned_cols=123 Identities=23% Similarity=0.238 Sum_probs=72.2
Q ss_pred CCCEEEEEEccc---------C--------HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc--hHHH-HHHHhhh-c
Q 027801 74 EGLRFALVVARF---------N--------ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF--EIGV-VAQQLGK-S 132 (218)
Q Consensus 74 ~~~RIaIV~Srf---------n--------~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~--ELP~-aak~L~~-~ 132 (218)
...||++|..++ + ......=++|..+.|+++|+..+...++. +|.+ |--+ +++.+++ .
T Consensus 188 G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~ 266 (366)
T 3h5t_A 188 GHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIME-CWINNRQHNFEVAKELLETH 266 (366)
T ss_dssp TCCSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEE-ESSCCHHHHHHHHHHHHHHC
T ss_pred CCCcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEE-cCCCCHHHHHHHHHHHHcCC
Confidence 345899998321 1 22344556899999999998754433443 3333 3222 4455554 4
Q ss_pred CCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCC-----CCCCcHHHHHHHHH
Q 027801 133 GKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGG-----KSGNKGAEAALTAI 207 (218)
Q Consensus 133 ~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~-----k~gnKG~EAA~aAl 207 (218)
.++|||+|. .|.++-.+.++|.+..++ +|==..|++.++.+.+. ..+. ....-|..|+...+
T Consensus 267 ~~~~ai~~~----------nD~~A~g~~~al~~~G~~--vP~disvigfD~~~~~~-~~~lttv~q~~~~~G~~Av~~L~ 333 (366)
T 3h5t_A 267 PDLTAVLCT----------VDALAFGVLEYLKSVGKS--APADLSLTGFDGTHMAL-ARDLTTVIQPNKLKGFKAGETLL 333 (366)
T ss_dssp TTCCEEEES----------SHHHHHHHHHHHHHTTCC--TTTTCEEEEEECCHHHH-HTTCCEEECCHHHHHHHHHHHHH
T ss_pred CCCcEEEEC----------CcHHHHHHHHHHHHcCCC--CCCceEEEEECCChhhc-CCCccEEEeCHHHHHHHHHHHHH
Confidence 579999985 366888888999888775 33222344556655554 2221 12234555555555
Q ss_pred HHH
Q 027801 208 EMA 210 (218)
Q Consensus 208 eM~ 210 (218)
+++
T Consensus 334 ~~i 336 (366)
T 3h5t_A 334 KMI 336 (366)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 153
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=77.74 E-value=9.1 Score=30.81 Aligned_cols=94 Identities=13% Similarity=0.160 Sum_probs=57.9
Q ss_pred CCCEEEEEEccc------CHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeee
Q 027801 74 EGLRFALVVARF------NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVR 146 (218)
Q Consensus 74 ~~~RIaIV~Srf------n~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIr 146 (218)
+.+|++|+..-= -.+-...++...+++|.+.|+. +....||.-.| |=-+++.+++..++|.||+-|-+
T Consensus 4 ~~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~---v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~-- 78 (178)
T 2pbq_A 4 KKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFE---VEYRVIPDERDLIEKTLIELADEKGCSLILTTGGT-- 78 (178)
T ss_dssp -CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCE---EEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC--
T ss_pred CCCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCE---EEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCC--
Confidence 457888887421 0111234455544455578985 35567998876 55566666654579999999998
Q ss_pred CCchhHHHHHHHHHHH-----------HHHhchhcCCce
Q 027801 147 GDTTHYDAVANSAASG-----------VLSAGVNSGVPC 174 (218)
Q Consensus 147 GeT~H~e~Va~~vs~g-----------Lm~lsL~~~vPV 174 (218)
|-| ++|++.+++.+. +..++++. +|.
T Consensus 79 g~g-~~D~t~ea~~~~~~~~l~g~~~~~~~v~~~~-~p~ 115 (178)
T 2pbq_A 79 GPA-PRDVTPEATEAVCEKMLPGFGELMRQVSLKQ-VPT 115 (178)
T ss_dssp SSS-TTCCHHHHHHHHCSEECHHHHHHHHHHHHTT-CGG
T ss_pred CCC-CCCchHHHHHHHhCCCCCChHHHHHHHhccc-Ccc
Confidence 333 466666666543 55666655 565
No 154
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=77.70 E-value=13 Score=30.96 Aligned_cols=92 Identities=18% Similarity=0.132 Sum_probs=59.8
Q ss_pred CCCCEEEEEEccc--CHHHHHHHHHHHHHHHHHCCC--CCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEeeee
Q 027801 73 NEGLRFALVVARF--NELVTKLLLEGALETFKKYSV--KEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGAVV 145 (218)
Q Consensus 73 ~~~~RIaIV~Srf--n~~It~~Ll~gA~~~L~~~Gv--~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~VI 145 (218)
.+..|||++...- .......+++++...+++.|. .-..++++..-...+-. -.+++|++.++.|+|| |..
T Consensus 4 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~i~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~ii--G~~- 80 (368)
T 4eyg_A 4 EDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDTVAGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIA--GFG- 80 (368)
T ss_dssp CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEE--ECS-
T ss_pred CCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEE--CCC-
Confidence 3568999999753 456677888898888888663 33355666555444332 3456677778899988 432
Q ss_pred eCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 146 RGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 146 rGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
+...+..+.++.-+.++|++..
T Consensus 81 ----------~s~~~~~~~~~~~~~~ip~i~~ 102 (368)
T 4eyg_A 81 ----------ITPAALAAAPLATQAKVPEIVM 102 (368)
T ss_dssp ----------SHHHHHHHHHHHHHHTCCEEES
T ss_pred ----------ccHHHHHHHHHHHhCCceEEec
Confidence 1223445556666789998864
No 155
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=77.10 E-value=3.2 Score=34.93 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=36.9
Q ss_pred CCCCEEEEEEcc-cCH-HHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCC-cchHHHHHHHhhhcCCccEEEEEe
Q 027801 73 NEGLRFALVVAR-FNE-LVTKLLLEGALETFKKYSVKEENIDVVW-VPG-SFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 73 ~~~~RIaIV~Sr-fn~-~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPG-A~ELP~aak~L~~~~~yDaVIaLG 142 (218)
++..+||+|... .++ .....+++|..+.++++|+. +.++. .+. .-+. -.++.|+ ..++|+||+.|
T Consensus 3 ~~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~~---~~~~~~~~~~~~~~-~~l~~l~-~~~vdgIi~~~ 71 (296)
T 2hqb_A 3 GGGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVD---VVLEEGVNSEQKAH-RRIKELV-DGGVNLIFGHG 71 (296)
T ss_dssp ---CEEEEECCCC----CCTHHHHHHHHHHHHHSCCE---EEEECCCCSHHHHH-HHHHHHH-HTTCCEEEECS
T ss_pred CCCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCCe---EEEEeCCCCHHHHH-HHHHHHH-HCCCCEEEEcC
Confidence 345689998862 433 45567778888888998863 33321 122 2122 2455554 46799999865
No 156
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=77.05 E-value=4.1 Score=34.64 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=55.6
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch--H--------HHH---HHHhhhcCCccEEEEE
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE--I--------GVV---AQQLGKSGKYTAVLCI 141 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E--L--------P~a---ak~L~~~~~yDaVIaL 141 (218)
+.||+|+.+..-- . ... .+.++++|... .+..+.-++..+ + -.. +.++.+.++.|+ |+|
T Consensus 109 ~~rigVlaT~~t~--~-~~~---~~~l~~~g~~~-~~~~v~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~gad~-IVL 180 (245)
T 3qvl_A 109 ATRFSIVTTLPRT--L-IIA---RHLLHQYGFHQ-HCAALHAIDLPVLALEDGSGLAQEKVRERCIRALKEDGSGA-IVL 180 (245)
T ss_dssp CSCEEEEESCGGG--H-HHH---HHHHHHHTCGG-GEEEEEECCSCGGGGGSSSSHHHHHHHHHHHHHHHHSCCSE-EEE
T ss_pred CCEEEEEEcchhH--H-HHH---HHHHHHcCCCC-eEEEEeCCCCCHHHHcCCcHHHHHHHHHHHHHHHHhcCCCE-EEE
Confidence 3699999988742 1 333 33445567642 333344443321 1 111 222334467776 568
Q ss_pred eeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCCCC
Q 027801 142 GAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGKS 195 (218)
Q Consensus 142 G~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~k~ 195 (218)
|| .||-++.+.+.+.+ ++||+.++-.+-.+-+.+-|.|.+.
T Consensus 181 GC------Th~p~l~~~i~~~~-------gVpvID~~~a~~~~~~~l~~~gl~~ 221 (245)
T 3qvl_A 181 GS------GGMATLAQQLTREL-------RVPVIDGVSAAVKMVESLVALGLAT 221 (245)
T ss_dssp CC------GGGGGGHHHHHHHH-------TSCEECHHHHHHHHHHHHHHTTCCC
T ss_pred CC------CChHHHHHHHHHHc-------CCeEEccHHHHHHHHHHHHhCCCCC
Confidence 88 38877777665432 6999988776654555555555443
No 157
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=77.02 E-value=12 Score=34.30 Aligned_cols=63 Identities=14% Similarity=0.218 Sum_probs=41.7
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc-----chHH-HHHHHhhhcCCc---cEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS-----FEIG-VVAQQLGKSGKY---TAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA-----~ELP-~aak~L~~~~~y---DaVIaLG~ 143 (218)
.+.|+.||..+.-.. ...+...+.|++.|+. +.++.+|+- +|.= -+++.+ ...++ |.||++|=
T Consensus 61 ~~~rvlIVtd~~v~~---~~~~~v~~~L~~~g~~---~~~~~~~~gE~~kt~~~v~~~~~~l-~~~~~~R~d~IIAvGG 132 (390)
T 3okf_A 61 AKQKVVIVTNHTVAP---LYAPAIISLLDHIGCQ---HALLELPDGEQYKTLETFNTVMSFL-LEHNYSRDVVVIALGG 132 (390)
T ss_dssp TTCEEEEEEETTTHH---HHHHHHHHHHHHHTCE---EEEEEECSSGGGCBHHHHHHHHHHH-HHTTCCTTCEEEEEES
T ss_pred CCCEEEEEECCcHHH---HHHHHHHHHHHHcCCe---EEEEEECCCcCCchHHHHHHHHHHH-HhcCCCcCcEEEEECC
Confidence 456899998776554 3677788888888874 667778883 3322 222333 33444 89999983
No 158
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=76.55 E-value=9.9 Score=31.70 Aligned_cols=64 Identities=6% Similarity=-0.037 Sum_probs=43.1
Q ss_pred CCCCEEEEEEcc-cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC----cch-HHHHHHHhhhcCCccEEEE
Q 027801 73 NEGLRFALVVAR-FNELVTKLLLEGALETFKKYSVKEENIDVVWVPG----SFE-IGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 73 ~~~~RIaIV~Sr-fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG----A~E-LP~aak~L~~~~~yDaVIa 140 (218)
.+..+||+|... .....-..+++++.+.++++|+. +.++.... ..+ ---.++.+. ..++||||.
T Consensus 41 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi 110 (342)
T 1jx6_A 41 QRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNIN---YQLNQVFTRPNADIKQQSLSLMEAL-KSKSDYLIF 110 (342)
T ss_dssp SSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEECCTTCCHHHHHHHHHHHH-HTTCSEEEE
T ss_pred CCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCe---EEEEecCCCCccCHHHHHHHHHHHH-hcCCCEEEE
Confidence 344579999988 66666778999999999999974 55553222 222 112345554 467999997
No 159
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=75.96 E-value=9.9 Score=31.30 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=55.3
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
..||++|... ......+.++..+.|+++|+.. ....++ +|..+.--.++++.+ .+.|+|++.+. +
T Consensus 138 ~~~i~~i~~~--~~~~~~~~~~~~~~l~~~g~~v--~~~~~~~~~~~d~~~~~~~l~~-~~~d~i~~~~~---------~ 203 (346)
T 1usg_A 138 PQRIAIIHDK--QQYGEGLARSVQDGLKAANANV--VFFDGITAGEKDFSALIARLKK-ENIDFVYYGGY---------Y 203 (346)
T ss_dssp CSSEEEEECS--SHHHHHHHHHHHHHHHHTTCCE--EEEEECCTTCCCCHHHHHHHHH-TTCCEEEEESC---------H
T ss_pred CCeEEEEECC--CchHHHHHHHHHHHHHHcCCEE--EEEeccCCCCcCHHHHHHHHHh-cCCCEEEEcCc---------c
Confidence 4689999874 4566778899999999999851 222333 566665556677754 46899988652 1
Q ss_pred HHHHHHHHHHHHhchhcCCceE
Q 027801 154 AVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVi 175 (218)
-.+-.+.+.+.+..+ .+|++
T Consensus 204 ~~a~~~~~~~~~~g~--~~~~~ 223 (346)
T 1usg_A 204 PEMGQMLRQARSVGL--KTQFM 223 (346)
T ss_dssp HHHHHHHHHHHHTTC--CCEEE
T ss_pred hHHHHHHHHHHHcCC--CCeEE
Confidence 124455666666554 45744
No 160
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=75.60 E-value=15 Score=30.66 Aligned_cols=119 Identities=15% Similarity=0.131 Sum_probs=67.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchHH---HHHHHhhh-cCCccEEEEEeeeeeCCc
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIG---VVAQQLGK-SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~ELP---~aak~L~~-~~~yDaVIaLG~VIrGeT 149 (218)
..||+++...-.......-++|..+.|+++ |+. +.. .++|.|... -+++.+++ ..++|||+|..
T Consensus 128 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~---~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~aI~~~n------- 196 (325)
T 2x7x_A 128 KGNIVELTGLSGSTPAMERHQGFMAAISKFPDIK---LID-KADAAWERGPAEIEMDSMLRRHPKIDAVYAHN------- 196 (325)
T ss_dssp EEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEE---EEE-EEECTTSHHHHHHHHHHHHHHCSCCCEEEESS-------
T ss_pred CceEEEEECCCCCccHHHHHHHHHHHHHhCCCCE---EEe-eecCCCCHHHHHHHHHHHHHhCCCCCEEEECC-------
Confidence 358999987755555556679999999998 753 221 234555432 23344544 45799999752
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCH------HHHHHh----hCCCCCCcHHHHHHHHHHHHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNM------DQALNR----AGGKSGNKGAEAALTAIEMAS 211 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~------eQA~~R----ag~k~gnKG~EAA~aAleM~~ 211 (218)
|.++-.+.+++.+..+-.++.|+ | .++. -+++.. +......-|..|+..+++++.
T Consensus 197 ---d~~A~g~~~al~~~Gip~dv~vi-g---~D~~~~~~~~l~~i~~g~~~~tv~~p~~g~~av~~l~~~i~ 261 (325)
T 2x7x_A 197 ---DRIAPGAYQAAKMAGREKEMIFV-G---IDALPGKGNGLELVLDSVLDATFIYPTNGDKVLQLAMDILE 261 (325)
T ss_dssp ---TTHHHHHHHHHHHTTCTTSSEEE-E---EECCCSTTSHHHHHHTTSCSEEEECCCCHHHHHHHHHHHHT
T ss_pred ---CchHHHHHHHHHHcCCCCCeEEE-E---ECCCcchHHHHHHHHcCCcEEEEcCcHHHHHHHHHHHHHHc
Confidence 34666677777766543333332 2 2222 223322 100112358888888887763
No 161
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=75.57 E-value=15 Score=33.80 Aligned_cols=86 Identities=14% Similarity=0.075 Sum_probs=55.8
Q ss_pred HHHHHhhhcCCccEEEEEeeee-eCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHh---hCCCCCCcH
Q 027801 124 VVAQQLGKSGKYTAVLCIGAVV-RGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR---AGGKSGNKG 199 (218)
Q Consensus 124 ~aak~L~~~~~yDaVIaLG~VI-rGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~R---ag~k~gnKG 199 (218)
-+++.+++..++|+|++.=+.- -|++. .+.+++.+.+.+.++. .++||+...+..++.+++.++ +|.-.-.--
T Consensus 358 ~al~~~l~dp~vd~vlv~~~~~~~Gg~~-~~~~a~~i~~al~~~~--~~kPvvv~~~~g~~~~~~~~~L~~~Gip~~~sp 434 (457)
T 2csu_A 358 RTAKLLLQDPNVDMLIAICVVPTFAGMT-LTEHAEGIIRAVKEVN--NEKPVLAMFMAGYVSEKAKELLEKNGIPTYERP 434 (457)
T ss_dssp HHHHHHHHSTTCSEEEEEEECCCSTTCC-SSHHHHHHHHHHHHHC--CCCCEEEEEECTTTTHHHHHHHHTTTCCEESSH
T ss_pred HHHHHHhcCCCCCEEEEEccccccccCC-chhHHHHHHHHHHHhc--CCCCEEEEeCCCcchHHHHHHHHhCCCCccCCH
Confidence 3455567788999999853321 12232 4567888888888876 789998877776655555433 443333445
Q ss_pred HHHHHHHHHHHHH
Q 027801 200 AEAALTAIEMASL 212 (218)
Q Consensus 200 ~EAA~aAleM~~L 212 (218)
.+|++++..|+..
T Consensus 435 e~Av~al~~l~~~ 447 (457)
T 2csu_A 435 EDVASAAYALVEQ 447 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7788877777664
No 162
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=75.30 E-value=15 Score=30.71 Aligned_cols=86 Identities=10% Similarity=-0.016 Sum_probs=56.1
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDA 154 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~ 154 (218)
..||+||... +......+.++..+.|+++|+.. .....-+|..+.--.++++. ..+.|+|++.+. +-
T Consensus 149 ~~~iaii~~~-~~~~~~~~~~~~~~~~~~~G~~v--~~~~~~~~~~d~~~~~~~l~-~~~~d~v~~~~~---------~~ 215 (366)
T 3td9_A 149 AKRVVVFTDV-EQDYSVGLSNFFINKFTELGGQV--KRVFFRSGDQDFSAQLSVAM-SFNPDAIYITGY---------YP 215 (366)
T ss_dssp CCEEEEEEET-TCHHHHHHHHHHHHHHHHTTCEE--EEEEECTTCCCCHHHHHHHH-HTCCSEEEECSC---------HH
T ss_pred CcEEEEEEeC-CCcHHHHHHHHHHHHHHHCCCEE--EEEEeCCCCccHHHHHHHHH-hcCCCEEEEccc---------hh
Confidence 4699999643 33445667899999999999852 22224467777666677774 457999998553 12
Q ss_pred HHHHHHHHHHHhchhcCCceE
Q 027801 155 VANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 155 Va~~vs~gLm~lsL~~~vPVi 175 (218)
.+..+.+.+.+..+ .+|++
T Consensus 216 ~a~~~~~~~~~~g~--~~~~~ 234 (366)
T 3td9_A 216 EIALISRQARQLGF--TGYIL 234 (366)
T ss_dssp HHHHHHHHHHHTTC--CSEEE
T ss_pred HHHHHHHHHHHcCC--CceEE
Confidence 34445666666665 46764
No 163
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=75.25 E-value=20 Score=28.86 Aligned_cols=95 Identities=18% Similarity=0.222 Sum_probs=58.9
Q ss_pred CCE--EEEEEcccCHHHHHHHHHHHHHHHHHC-CCCCCCeEEEEeCCcchHH---HHHHHhhhc-CCccEEEEEeeeeeC
Q 027801 75 GLR--FALVVARFNELVTKLLLEGALETFKKY-SVKEENIDVVWVPGSFEIG---VVAQQLGKS-GKYTAVLCIGAVVRG 147 (218)
Q Consensus 75 ~~R--IaIV~Srfn~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~VPGA~ELP---~aak~L~~~-~~yDaVIaLG~VIrG 147 (218)
..| |+++...-+......-.+|..+.|+++ |+. +.. ..++.+... -+++.+++. .++|||+|..
T Consensus 129 ~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~---~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~~----- 199 (290)
T 2fn9_A 129 AKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFK---MVA-QQSAEFDRDTAYKVTEQILQAHPEIKAIWCGN----- 199 (290)
T ss_dssp CSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEE---EEE-EEECTTCHHHHHHHHHHHHHHCTTCCEEEESS-----
T ss_pred ccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCE---EEE-eccCCCCHHHHHHHHHHHHHhCCCCcEEEECC-----
Confidence 346 677766544444556679999999998 653 211 235555433 234555543 5799999752
Q ss_pred CchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHH
Q 027801 148 DTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188 (218)
Q Consensus 148 eT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~ 188 (218)
|.++-.+.+++.+..+ .+++| ++.++...+.
T Consensus 200 -----d~~a~g~~~al~~~g~-~dv~v----ig~d~~~~~~ 230 (290)
T 2fn9_A 200 -----DAMALGAMKACEAAGR-TDIYI----FGFDGAEDVI 230 (290)
T ss_dssp -----HHHHHHHHHHHHHTTC-TTCEE----ECCBCCHHHH
T ss_pred -----chHHHHHHHHHHHCCC-CCeEE----EEeCCCHHHH
Confidence 4577788888888877 45544 4566665553
No 164
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=73.94 E-value=12 Score=30.23 Aligned_cols=93 Identities=14% Similarity=0.057 Sum_probs=59.3
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE--eCCcchHHH---HHHHhhhc-CCccEEEEEeeeeeCCc
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW--VPGSFEIGV---VAQQLGKS-GKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~--VPGA~ELP~---aak~L~~~-~~yDaVIaLG~VIrGeT 149 (218)
.||+++...-+......-.+|..+.|++++.. ++++. .++.+...- +++.+++. .++|||+|..
T Consensus 128 ~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~------- 197 (303)
T 3d02_A 128 GGYVIYVGSLTVPQHNLWADLLVKYQKEHYPD---MHEVTRRMPVAESVDDSRRTTLDLMKTYPDLKAVVSFG------- 197 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHHCTT---EEESSSCBSCTTCHHHHHHHHHHHHHHCTTEEEEEESS-------
T ss_pred ceEEEEecCCCCccHHHHHHHHHHHHHhhCCC---CEEEEeecCCCCCHHHHHHHHHHHHHhCCCCCEEEEeC-------
Confidence 38999987665556667789999999987643 44332 244554332 33444443 4789998853
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHH
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMD 185 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~e 185 (218)
|.++..+.+++.+..++.+++|+ +.++..
T Consensus 198 ---d~~a~g~~~al~~~g~~~dv~vi----g~d~~~ 226 (303)
T 3d02_A 198 ---SNGPIGAGRAVKEKRAKNKVAVY----GMMIPS 226 (303)
T ss_dssp ---TTHHHHHHHHHHHTTCTTTCEEE----ECCCHH
T ss_pred ---CcchhHHHHHHHhcCCCCCeEEE----EeCCCH
Confidence 34677788888888876445443 446644
No 165
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=73.04 E-value=13 Score=29.53 Aligned_cols=92 Identities=13% Similarity=0.045 Sum_probs=59.6
Q ss_pred CCEEEEEEccc-CHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHH---HHhhhcCCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVA---QQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srf-n~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aa---k~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
..||+++.... +......-.+|..+.|+++|+.. +. +++.+...-+. +.+++ .++|||+|.
T Consensus 115 ~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~---~~--~~~~~~~~~~~~~~~~~l~-~~~~ai~~~--------- 179 (255)
T 1byk_A 115 HRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHP---VA--ALPGLAMKQGYENVAKVIT-PETTALLCA--------- 179 (255)
T ss_dssp CCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCC---EE--ECCCSCHHHHHHHSGGGCC-TTCCEEEES---------
T ss_pred CCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCc---ce--eecCCccchHHHHHHHHhc-CCCCEEEEe---------
Confidence 45899998652 32333455689999999999852 32 46666544333 33443 579999874
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA 187 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA 187 (218)
.|.++-.+.+++.+..+ .++.| ++.++...+
T Consensus 180 -~d~~A~g~~~al~~~g~-~di~v----ig~d~~~~~ 210 (255)
T 1byk_A 180 -TDTLALGASKYLQEQRI-DTLQL----ASVGNTPLM 210 (255)
T ss_dssp -SHHHHHHHHHHHHHTTC-CSCEE----EEECCCHHH
T ss_pred -ChHHHHHHHHHHHHcCC-CcEEE----EEeCCchhh
Confidence 35688888888888888 45554 334555444
No 166
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=72.36 E-value=17 Score=30.28 Aligned_cols=122 Identities=12% Similarity=0.116 Sum_probs=76.3
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhh---cCCccEEEEEeeeeeCCc
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~---~~~yDaVIaLG~VIrGeT 149 (218)
.+..||+||.+.-.+. .-.+.|.+.|++.|++ + .+.|-|+.-.|--...+++ ..+++.||+.. |..
T Consensus 10 ~~~P~V~IimGS~SD~---~v~~~a~~~l~~~gi~---~-ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~A----G~a 78 (173)
T 4grd_A 10 HSAPLVGVLMGSSSDW---DVMKHAVAILQEFGVP---Y-EAKVVSAHRMPDEMFDYAEKARERGLRAIIAGA----GGA 78 (173)
T ss_dssp CSSCSEEEEESSGGGH---HHHHHHHHHHHHTTCC---E-EEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEE----ESS
T ss_pred CCCCeEEEEeCcHhHH---HHHHHHHHHHHHcCCC---E-EEEEEccccCHHHHHHHHHHHHhcCCeEEEEec----ccc
Confidence 4567999999887766 5568899999999996 4 4679999999977766653 46788777642 556
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCC---CHHHHHHhhC--------CCCCC--cHHHHHHHHHHHHHHHhh
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCD---NMDQALNRAG--------GKSGN--KGAEAALTAIEMASLFEH 215 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~---n~eQA~~Rag--------~k~gn--KG~EAA~aAleM~~L~~~ 215 (218)
.|--=|. +-.+.+|||-.=.... ..+--+.-.. .-.-| -|..||.-|.+++.+...
T Consensus 79 ahLpgvv----------A~~t~~PVIgVPv~~~~l~G~dsLlSivqMP~Gvpvatv~i~~~~a~NAallA~~ILa~~d~ 147 (173)
T 4grd_A 79 AHLPGML----------AAKTTVPVLGVPVASKYLKGVDSLHSIVQMPKGVPVATFAIGEAGAANAALFAVSILSGNSV 147 (173)
T ss_dssp CCHHHHH----------HHHCCSCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHTTSCH
T ss_pred ccchhhh----------eecCCCCEEEEEcCCCCCCchhHHHHHHhCCCCCCceEEecCCcchHHHHHHHHHHHcCCCH
Confidence 6654221 1125667664433222 1222122111 01234 467888888888776543
No 167
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=71.74 E-value=11 Score=31.66 Aligned_cols=63 Identities=8% Similarity=0.039 Sum_probs=48.3
Q ss_pred CEEEEEEcccC-----HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 76 LRFALVVARFN-----ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 76 ~RIaIV~Srfn-----~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
+||+||.+--+ .-.+..|++.+.+.|++.|. +++++.+...+++.-..+++. ..|+||..-=+
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~---ev~~~dL~~~~Dv~~~~~~l~---~aD~iv~~~P~ 93 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGH---QVKITTVDQGYDIESEIENYL---WADTIIYQMPA 93 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTC---CEEEEEGGGCCCHHHHHHHHH---HCSEEEEEEEC
T ss_pred cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCC---EEEEEECCCccCHHHHHHHHH---hCCEEEEECCh
Confidence 37889887653 47888999999999999887 488888887788776666664 58888765443
No 168
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=70.95 E-value=13 Score=31.51 Aligned_cols=86 Identities=15% Similarity=0.177 Sum_probs=56.4
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
..||+||... ......++++..+.|+++|+. .+....+ +|..+.--.++++. ..+.|+|++.+. +
T Consensus 143 ~~~iaii~~~--~~~g~~~~~~~~~~l~~~G~~--v~~~~~~~~~~~d~~~~~~~l~-~~~~dav~~~~~---------~ 208 (392)
T 3lkb_A 143 GAKVALVVHP--SPFGRAPVEDARKAARELGLQ--IVDVQEVGSGNLDNTALLKRFE-QAGVEYVVHQNV---------A 208 (392)
T ss_dssp TCEEEEEECS--SHHHHTTHHHHHHHHHHHTCE--EEEEEECCTTCCCCHHHHHHHH-HTTCCEEEEESC---------H
T ss_pred CCEEEEEEeC--CchhhhHHHHHHHHHHHcCCe--EEEEEeeCCCCcCHHHHHHHHH-hcCCCEEEEecC---------c
Confidence 4799999853 456778889999999999975 2233333 45566555566664 457999997652 2
Q ss_pred HHHHHHHHHHHHhchhcCCceEE
Q 027801 154 AVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVif 176 (218)
-.+-.+.+.+.+..+ .+|++.
T Consensus 209 ~~a~~~~~~~~~~g~--~~~~~~ 229 (392)
T 3lkb_A 209 GPVANILKDAKRLGL--KMRHLG 229 (392)
T ss_dssp HHHHHHHHHHHHTTC--CCEEEE
T ss_pred chHHHHHHHHHHcCC--CceEEE
Confidence 345556666666655 456543
No 169
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=70.92 E-value=14 Score=33.67 Aligned_cols=122 Identities=17% Similarity=0.133 Sum_probs=77.2
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc---hHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF---EIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~---ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
-||+|+..- ..|---+.+.+..+|..+.| .+.+-|.- .+=-+++.+++..++|+|++ .+. |.....
T Consensus 248 g~I~ii~Ng------~Gl~~~t~D~i~~~G~~~aN--~lD~gG~a~~e~~~~al~~~l~d~~v~~ilv--~i~-ggi~~~ 316 (397)
T 3ufx_B 248 GNIGIIGNG------AGLVMYTLDLVNRVGGKPAN--FLDIGGGAKADVVYNALKVVLKDPDVKGVFI--NIF-GGITRA 316 (397)
T ss_dssp SSEEEEESS------HHHHHHHHHHHHHTTCCBSE--EEECCSCCCHHHHHHHHHHHHTCTTCCEEEE--EEE-EEEEES
T ss_pred CcEEEEecC------ccHHHHHHHHHHHcCCCcCC--cEecCCCCCHHHHHHHHHHHHcCCCCCEEEE--ECC-CCCCCH
Confidence 489999753 25556688999999987655 44554432 25556677777888999996 122 333444
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCCC---CCCcHHHHHHHHHHHHH
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGK---SGNKGAEAALTAIEMAS 211 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~k---~gnKG~EAA~aAleM~~ 211 (218)
+-|++.+.+.+.+. +.++||+-....+ |.+++.+.-... .-.-=.+||++++++++
T Consensus 317 ~~vA~~i~~a~~~~--~~~kPvvv~~~G~-~~~~~~~~l~~~gip~~~~~e~Aa~~~~~l~~ 375 (397)
T 3ufx_B 317 DEVAKGVIRALEEG--LLTKPVVMRVAGT-AEEEAKKLLEGKPVYMYPTSIEAAKVTVAMKG 375 (397)
T ss_dssp HHHHHHHHHHHTTT--CCCSCEEEEEEEE-CHHHHHHHTTTSSEEECSSHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhh--CCCCcEEEEccCC-CHHHHHHHHHhCCCcccCCHHHHHHHHHHHHH
Confidence 55665555554433 2489999988886 888877653211 22233577777776543
No 170
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=70.90 E-value=23 Score=28.61 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=53.9
Q ss_pred CEEEEEE-cccCHHHHHHHHHHHHHHHHHCCCCCCCeEEE-EeCCcchHHHH---HHHhhh-cCCccE--EEEEeeeeeC
Q 027801 76 LRFALVV-ARFNELVTKLLLEGALETFKKYSVKEENIDVV-WVPGSFEIGVV---AQQLGK-SGKYTA--VLCIGAVVRG 147 (218)
Q Consensus 76 ~RIaIV~-Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv-~VPGA~ELP~a---ak~L~~-~~~yDa--VIaLG~VIrG 147 (218)
.||+++. +.-.......-.+|..+.|+++|.+. ++++ ...+.+...-+ ++.+++ ..++|| |+|.
T Consensus 133 ~~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~------ 204 (306)
T 8abp_A 133 KESAVMAITANELDTARRRTTGSMDALKAAGFPE--KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGM------ 204 (306)
T ss_dssp GGEEEEEEECTTSHHHHHHHHHHHHHHHHHTCCG--GGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEEECS------
T ss_pred cceEEEEecCCCChHHHHHHHHHHHHHHhcCCCC--cEEEeeccCCCChHHHHHHHHHHHHhCCCCceEEEEeC------
Confidence 4899985 55555555666799999999998753 3333 34566665433 333443 457898 4442
Q ss_pred CchhHHHHHHHHHHHHHHhchh
Q 027801 148 DTTHYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 148 eT~H~e~Va~~vs~gLm~lsL~ 169 (218)
.|.++-.+.+++.+..++
T Consensus 205 ----nD~~A~g~~~al~~~g~~ 222 (306)
T 8abp_A 205 ----NDSTVLGGVRATEGQGFK 222 (306)
T ss_dssp ----SHHHHHHHHHHHHHTTCC
T ss_pred ----CcHHHHHHHHHHHHcCCC
Confidence 366788888888887775
No 171
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=70.59 E-value=17 Score=30.34 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=56.6
Q ss_pred CCCCEEEEEEcc--cCHHHHHHHHHHHHHHHHHCC--CCCCCeEEEEeCCcchHHH---HHHHhhhcCCccEEEEEeeee
Q 027801 73 NEGLRFALVVAR--FNELVTKLLLEGALETFKKYS--VKEENIDVVWVPGSFEIGV---VAQQLGKSGKYTAVLCIGAVV 145 (218)
Q Consensus 73 ~~~~RIaIV~Sr--fn~~It~~Ll~gA~~~L~~~G--v~~e~I~vv~VPGA~ELP~---aak~L~~~~~yDaVIaLG~VI 145 (218)
.+..|||++... ........+++++...+++.| +.-..++++..-...+--- .+++|++.++.|+||...+
T Consensus 14 ~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~-- 91 (375)
T 4evq_A 14 AGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGTVH-- 91 (375)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEECSS--
T ss_pred CCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcCCc--
Confidence 467899999875 345667788899999999876 2222356655544443332 3445555568999875321
Q ss_pred eCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 146 RGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 146 rGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
...+..+.++.-+.++|++..
T Consensus 92 -----------s~~~~~~~~~~~~~~iP~v~~ 112 (375)
T 4evq_A 92 -----------SGVAMAMVKIAREDGIPTIVP 112 (375)
T ss_dssp -----------HHHHHHHHHHHHHHCCCEEES
T ss_pred -----------cHHHHHHHHHHHHcCceEEec
Confidence 122334455556678998854
No 172
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=70.56 E-value=24 Score=26.77 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchh
Q 027801 90 TKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 90 t~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~ 169 (218)
.+..++.+.+.+.+.|++ +++...+.|. ..-.+-..++..++|- |++|. +|.+.--+++-..+++.+.+-
T Consensus 79 ~~~~l~~~~~~~~~~gv~--~v~~~v~~G~--~~~~I~~~a~~~~~DL-IV~G~--~g~~~~~~~~lGSva~~vl~~--- 148 (163)
T 1tq8_A 79 IYEILHDAKERAHNAGAK--NVEERPIVGA--PVDALVNLADEEKADL-LVVGN--VGLSTIAGRLLGSVPANVSRR--- 148 (163)
T ss_dssp HHHHHHHHHHHHHTTTCC--EEEEEEECSS--HHHHHHHHHHHTTCSE-EEEEC--CCCCSHHHHHTBBHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCC--eEEEEEecCC--HHHHHHHHHHhcCCCE-EEECC--CCCCcccceeeccHHHHHHHh---
Confidence 456778888888888874 3666667783 3445555667788995 56787 466666677777788777764
Q ss_pred cCCceEE
Q 027801 170 SGVPCIF 176 (218)
Q Consensus 170 ~~vPVif 176 (218)
..+||..
T Consensus 149 a~~PVlv 155 (163)
T 1tq8_A 149 AKVDVLI 155 (163)
T ss_dssp TTCEEEE
T ss_pred CCCCEEE
Confidence 4688764
No 173
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=69.97 E-value=28 Score=28.95 Aligned_cols=98 Identities=9% Similarity=-0.007 Sum_probs=61.4
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHHH---HHHhhh-cCCccEEEEEeeeeeCCc
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVV---AQQLGK-SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~a---ak~L~~-~~~yDaVIaLG~VIrGeT 149 (218)
..||+++...-...-...-.+|+.+.|++++. .++++. ..+.|...-+ ++.+++ ..++|||+|..
T Consensus 128 ~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI~~~n------- 197 (316)
T 1tjy_A 128 KAKVAFFYSSPTVTDQNQWVKEAKAKISQEHP---GWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPD------- 197 (316)
T ss_dssp SEEEEEEESCSSCHHHHHHHHHHHHHHHHHCT---TEEEEEEEECTTCHHHHHHHHHHHHHHCSSCCEEEECS-------
T ss_pred CCEEEEEEcCCCChhHHHHHHHHHHHHHhhCC---CcEEEEeccCCCCHHHHHHHHHHHHHhCCCCCEEEECC-------
Confidence 34899998776655566778999999987653 244433 3455544322 334444 35799999842
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHh
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~R 190 (218)
|.++-.+.++|.+.. ..+++| ++.++..++.+.
T Consensus 198 ---D~~A~g~~~al~~~G-~~dv~V----vG~D~~~~~~~~ 230 (316)
T 1tjy_A 198 ---ANALPAAAQAAENLK-RNNLAI----VGFSTPNVMRPY 230 (316)
T ss_dssp ---TTHHHHHHHHHHHTT-CCSCEE----EEBCCHHHHHHH
T ss_pred ---CccHHHHHHHHHHcC-CCCEEE----EEeCCCHHHHHH
Confidence 457778888888887 534443 334665544333
No 174
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=69.64 E-value=31 Score=29.17 Aligned_cols=91 Identities=11% Similarity=-0.078 Sum_probs=54.8
Q ss_pred CCCCEEEEEEcc--cCHHHHHHHHHHHHHHHHH---C-CCCCCCeEEEEeCCcchH---HHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVAR--FNELVTKLLLEGALETFKK---Y-SVKEENIDVVWVPGSFEI---GVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Sr--fn~~It~~Ll~gA~~~L~~---~-Gv~~e~I~vv~VPGA~EL---P~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..|||++... -+..+...+.+++...+++ . |+.-..++++..-...+- --++++|++..++|+||..+
T Consensus 5 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig~~- 83 (392)
T 3lkb_A 5 QQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLSYA- 83 (392)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEECC-
T ss_pred CCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEeCC-
Confidence 356799999864 3455566666666655554 2 343345777665544443 23456677767899998421
Q ss_pred eeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 144 VVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 144 VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
+ ..+..+.++.-+.++|++..
T Consensus 84 -----s--------~~~~~~~~~~~~~~iP~i~~ 104 (392)
T 3lkb_A 84 -----T--------GANLQLKPLIQELRIPTIPA 104 (392)
T ss_dssp -----H--------HHHHHHHHHHHHHTCCEEES
T ss_pred -----c--------HHHHHHHHHHHhCCceEEec
Confidence 1 22344455556679999873
No 175
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=68.58 E-value=23 Score=29.13 Aligned_cols=121 Identities=12% Similarity=0.190 Sum_probs=79.9
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhh---cCCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~---~~~yDaVIaLG~VIrGeT~H 151 (218)
..+|+||.+.--+. .-.+.|.+.|++.|++ + .+.|-++.-+|--...+++ ..+++.||+.. |...|
T Consensus 3 ~~~V~Iimgs~SD~---~v~~~a~~~l~~~gi~---~-ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A----G~aa~ 71 (163)
T 3ors_A 3 AMKVAVIMGSSSDW---KIMQESCNMLDYFEIP---Y-EKQVVSAHRTPKMMVQFASEARERGINIIIAGA----GGAAH 71 (163)
T ss_dssp CCCEEEEESCGGGH---HHHHHHHHHHHHTTCC---E-EEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEE----ESSCC
T ss_pred CCeEEEEECcHHHH---HHHHHHHHHHHHcCCC---E-EEEEECCcCCHHHHHHHHHHHHhCCCcEEEEEC----Cchhh
Confidence 46899999888766 5567899999999996 4 4679999999988888764 35688776643 66677
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCCH--HHH-HHh---hCC-----CCCC--cHHHHHHHHHHHHHHHhhh
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDNM--DQA-LNR---AGG-----KSGN--KGAEAALTAIEMASLFEHH 216 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~--eQA-~~R---ag~-----k~gn--KG~EAA~aAleM~~L~~~~ 216 (218)
--=|.. =.+.+|||..=....+. .++ +.- ..+ -.-| -|..||.-|.+++.+..+.
T Consensus 72 LpgvvA----------~~t~~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~~~d~~ 139 (163)
T 3ors_A 72 LPGMVA----------SLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPS 139 (163)
T ss_dssp HHHHHH----------HHCSSCEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHHTTCTH
T ss_pred hHHHHH----------hccCCCEEEeeCCCCCCCCHHHHHHHhhCCCCCceEEEEcCCcccHHHHHHHHHHHhCCCHH
Confidence 543322 23678888543332221 222 211 111 1234 6889999999998875544
No 176
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=68.41 E-value=11 Score=33.74 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=41.9
Q ss_pred CCEEEEEEcccCHHHHHH-HHHHHHHHHHHCCCCCCCeEEE-EeCCcchHHHHH--HHhhhcCCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVARFNELVTKL-LLEGALETFKKYSVKEENIDVV-WVPGSFEIGVVA--QQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~-Ll~gA~~~L~~~Gv~~e~I~vv-~VPGA~ELP~aa--k~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
..|+.||..+. +.+. +++...+.|++.|+. +.++ .|.+--.+-.+- -.+++..++|.||++| |.+.
T Consensus 31 ~~~~liVtd~~---~~~~g~~~~v~~~L~~~gi~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG----GGsv 100 (383)
T 3ox4_A 31 FKNALIVSDAF---MNKSGVVKQVADLLKAQGIN---SAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLG----GGSP 100 (383)
T ss_dssp CCEEEEEEEHH---HHHTTHHHHHHHHHHTTTCE---EEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEE----SHHH
T ss_pred CCEEEEEECCc---hhhCchHHHHHHHHHHcCCe---EEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeC----CcHH
Confidence 36898888753 4444 688888899988874 3333 243332333322 2234567899999999 5554
Q ss_pred hH
Q 027801 151 HY 152 (218)
Q Consensus 151 H~ 152 (218)
.+
T Consensus 101 ~D 102 (383)
T 3ox4_A 101 HD 102 (383)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 177
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=68.06 E-value=18 Score=30.33 Aligned_cols=127 Identities=12% Similarity=0.195 Sum_probs=74.4
Q ss_pred ccCCCCCCCE--EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhh---hcCCccEEEEEe
Q 027801 68 GFLTKNEGLR--FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLG---KSGKYTAVLCIG 142 (218)
Q Consensus 68 ~~~~~~~~~R--IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~---~~~~yDaVIaLG 142 (218)
+.++.+..+| |+||...-.+. .-.+.|.+.|++.|++ ..++|-++--.|--...++ +..+++.||+.
T Consensus 13 ~~~p~~~~mkp~V~IimGS~SD~---~v~~~a~~~L~~~gI~----~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~- 84 (181)
T 4b4k_A 13 GLVPRGSHMKSLVGVIMGSTSDW---ETMKYACDILDELNIP----YEKKVVSAHRTPDYMFEYAETARERGLKVIIAG- 84 (181)
T ss_dssp ---------CCSEEEEESSGGGH---HHHHHHHHHHHHTTCC----EEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEE-
T ss_pred ccccCCCCCCccEEEEECCHhHH---HHHHHHHHHHHHcCCC----eeEEEEccccChHHHHHHHHHHHhcCceEEEEe-
Confidence 3333344444 99999877765 4568999999999996 3567999999997776665 34678877764
Q ss_pred eeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCC---HHHHHHhh----CC----CCCCcH--HHHHHHHHHH
Q 027801 143 AVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDN---MDQALNRA----GG----KSGNKG--AEAALTAIEM 209 (218)
Q Consensus 143 ~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n---~eQA~~Ra----g~----k~gnKG--~EAA~aAleM 209 (218)
-|...|--=+. +-.+.+|||-.=+.... ++--+.-. |. -.-|+| ..||.-|.++
T Consensus 85 ---AG~aahLpGvv----------Aa~T~~PVIGVPv~s~~l~G~DsLlSivQMP~GvpVaTvaig~~ga~NAallA~qI 151 (181)
T 4b4k_A 85 ---AGGAAHLPGMV----------AAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQI 151 (181)
T ss_dssp ---ECSSCCHHHHH----------HTTCCSCEEEEECCCTTTTTHHHHHHHHTCCTTCCCEECCSSHHHHHHHHHHHHHH
T ss_pred ---ccccccchhhH----------HhcCCCCEEEEecCCCCccchhhHHHHHhCCCCCceEEEecCCccHHHHHHHHHHH
Confidence 26666654221 22467787744332221 22222211 10 123443 6688889998
Q ss_pred HHHHhh
Q 027801 210 ASLFEH 215 (218)
Q Consensus 210 ~~L~~~ 215 (218)
+.+..+
T Consensus 152 La~~d~ 157 (181)
T 4b4k_A 152 LGSFHD 157 (181)
T ss_dssp HTTTCH
T ss_pred HccCCH
Confidence 876544
No 178
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=68.03 E-value=22 Score=29.39 Aligned_cols=121 Identities=13% Similarity=0.177 Sum_probs=79.1
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhh---cCCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~---~~~yDaVIaLG~VIrGeT~H 151 (218)
..+|+||.+.--+. .-.+.|.+.|++.|++ + .+.|-|+.-.|--...+++ ..+++.||+.. |...|
T Consensus 6 ~~~V~IimgS~SD~---~v~~~a~~~l~~~gi~---~-ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A----G~aa~ 74 (169)
T 3trh_A 6 KIFVAILMGSDSDL---STMETAFTELKSLGIP---F-EAHILSAHRTPKETVEFVENADNRGCAVFIAAA----GLAAH 74 (169)
T ss_dssp CCEEEEEESCGGGH---HHHHHHHHHHHHTTCC---E-EEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEE----CSSCC
T ss_pred CCcEEEEECcHHhH---HHHHHHHHHHHHcCCC---E-EEEEEcccCCHHHHHHHHHHHHhCCCcEEEEEC----Chhhh
Confidence 35899999888765 5567899999999996 4 4779999999988888764 36788766643 66777
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCC---HHHHHHhhC---C-----CCCC--cHHHHHHHHHHHHHHHhhh
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDN---MDQALNRAG---G-----KSGN--KGAEAALTAIEMASLFEHH 216 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n---~eQA~~Rag---~-----k~gn--KG~EAA~aAleM~~L~~~~ 216 (218)
--=+. +=.+.+|||..=....+ .+--+.-.. + -.-+ -|..||.-|.+++.+..+.
T Consensus 75 Lpgvv----------A~~t~~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~~~d~~ 142 (169)
T 3trh_A 75 LAGTI----------AAHTLKPVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAIGKAGAKNAAILAAQIIALQDKS 142 (169)
T ss_dssp HHHHH----------HHTCSSCEEEEECCCSTTTTHHHHHHHHCCCTTSCCEECCSTHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHH----------HhcCCCCEEEeecCCCCCCCHHHHHHhhcCCCCCceEEEecCCccchHHHHHHHHHHcCCCHH
Confidence 54332 22467888854332222 222222211 1 1234 4668999999998875543
No 179
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=67.88 E-value=18 Score=30.45 Aligned_cols=82 Identities=16% Similarity=0.064 Sum_probs=53.3
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
...||+||.. +......+.++..+.|+++|+. .+...++ +|..+.--.++++. ..+.|+|++.+.-
T Consensus 139 g~~~vaii~~--~~~~g~~~~~~~~~~~~~~G~~--v~~~~~~~~~~~d~~~~l~~i~-~~~~d~v~~~~~~-------- 205 (375)
T 3i09_A 139 GGKTWFFLTA--DYAFGKALEKNTADVVKANGGK--VLGEVRHPLSASDFSSFLLQAQ-SSKAQILGLANAG-------- 205 (375)
T ss_dssp TCCEEEEEEE--SSHHHHHHHHHHHHHHHHTTCE--EEEEEEECTTCSCCHHHHHHHH-HTCCSEEEEECCH--------
T ss_pred CCceEEEEec--ccHHHHHHHHHHHHHHHHcCCE--EeeeeeCCCCCccHHHHHHHHH-hCCCCEEEEecCc--------
Confidence 3569999965 4456778899999999999974 2233334 47777666666664 4579999875531
Q ss_pred HHHHHHHHHHHHHhchh
Q 027801 153 DAVANSAASGVLSAGVN 169 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~ 169 (218)
+ .+..+.+.+.+..++
T Consensus 206 ~-~~~~~~~~~~~~g~~ 221 (375)
T 3i09_A 206 G-DTVNAIKAAKEFGIT 221 (375)
T ss_dssp H-HHHHHHHHHHHTTGG
T ss_pred h-hHHHHHHHHHHcCCC
Confidence 1 122345555665554
No 180
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=67.88 E-value=12 Score=31.33 Aligned_cols=86 Identities=10% Similarity=-0.004 Sum_probs=56.2
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
...||++|.. +......+.++..+.|+++|+.... ....-+|..+.--.++++. ..+.|+|++.+.- .
T Consensus 158 g~~~ia~i~~--~~~~~~~~~~~~~~~l~~~g~~v~~-~~~~~~~~~d~~~~~~~~~-~~~~dav~~~~~~----~---- 225 (386)
T 3sg0_A 158 GAKKVGYIGF--SDAYGEGYYKVLAAAAPKLGFELTT-HEVYARSDASVTGQVLKII-ATKPDAVFIASAG----T---- 225 (386)
T ss_dssp TCCEEEEEEE--SSHHHHHHHHHHHHHHHHHTCEECC-CEEECTTCSCCHHHHHHHH-HTCCSEEEEECCS----G----
T ss_pred CCCEEEEEec--CchHHHHHHHHHHHHHHHcCCEEEE-EEeeCCCCCcHHHHHHHHH-hcCCCEEEEecCc----c----
Confidence 4569999954 5667788999999999999975211 2334567777666667764 3578999886641 1
Q ss_pred HHHHHHHHHHHHhchhcCCce
Q 027801 154 AVANSAASGVLSAGVNSGVPC 174 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPV 174 (218)
.+..+.+.+.+..++ .|+
T Consensus 226 -~a~~~~~~~~~~g~~--~~~ 243 (386)
T 3sg0_A 226 -PAVLPQKALRERGFK--GAI 243 (386)
T ss_dssp -GGHHHHHHHHHTTCC--SEE
T ss_pred -hHHHHHHHHHHcCCC--CcE
Confidence 233445555665554 454
No 181
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=67.87 E-value=43 Score=28.32 Aligned_cols=91 Identities=10% Similarity=0.050 Sum_probs=49.8
Q ss_pred CCCCEEEEEEccc--CHHHHHHHHHHHHHHHHHC----CCCCCCeEEEEeCCcchH---HHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARF--NELVTKLLLEGALETFKKY----SVKEENIDVVWVPGSFEI---GVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srf--n~~It~~Ll~gA~~~L~~~----Gv~~e~I~vv~VPGA~EL---P~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..+||++...- +...-..+++++...+++. |+.-..++++......+- --++++|++..++|+||...+
T Consensus 5 ~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 84 (385)
T 1pea_A 5 QERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYM 84 (385)
T ss_dssp ---CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECCS
T ss_pred CCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCCc
Confidence 3567999998653 2456667777777777764 121124556555433322 234566766688999874321
Q ss_pred eeeCCchhHHHHHHHHHHHHHHhchhcCCceEE
Q 027801 144 VVRGDTTHYDAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 144 VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
+. .+..+.++..+.++|++.
T Consensus 85 -----s~--------~~~~~~~~~~~~~iP~v~ 104 (385)
T 1pea_A 85 -----SH--------TRKAVMPVVERADALLCY 104 (385)
T ss_dssp -----HH--------HHHHHHHHHHHTTCEEEE
T ss_pred -----hH--------HHHHHHHHHHhcCceEEE
Confidence 11 122234444456888875
No 182
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=67.81 E-value=27 Score=29.55 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=56.6
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHC--CCCCCCeEEEEe-CCcchHHHHHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKY--SVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~--Gv~~e~I~vv~V-PGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
...||+||.. +......+.++..+.|+++ |+. .+....+ +|..+.--.++++. ..+.|+|++.+. ++ .
T Consensus 141 g~~~vaii~~--~~~~g~~~~~~~~~~l~~~~~g~~--vv~~~~~~~~~~d~~~~~~~i~-~~~~d~v~~~~~---~~-~ 211 (387)
T 3i45_A 141 PITRWATIAP--NYEYGQSAVARFKELLLAARPEVT--FVAEQWPALYKLDAGPTVQALQ-QAEPEGLFNVLF---GA-D 211 (387)
T ss_dssp SCCEEEEECC--SSHHHHHHHHHHHHHHHHHCTTCE--EEEEECCCTTCCCHHHHHHHHH-HTCCSEEEECCC---TT-H
T ss_pred CCCeEEEEeC--CchHhHHHHHHHHHHHHHhCCCcE--EEeeecCCCCCcCHHHHHHHHH-hCCCCEEEEcCc---cH-H
Confidence 3579999984 4567788899999999998 553 2233333 47778777777764 467899988765 22 2
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceE
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
+..+.+.+.+..+..++||+
T Consensus 212 -----~~~~~~~~~~~g~~~~~~i~ 231 (387)
T 3i45_A 212 -----LPKFVREGRVRGLFAGRQVV 231 (387)
T ss_dssp -----HHHHHHHHHHHTSSTTCEEE
T ss_pred -----HHHHHHHHHHcCCCCCCeEE
Confidence 23344445555554445554
No 183
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=66.87 E-value=17 Score=30.19 Aligned_cols=123 Identities=13% Similarity=0.169 Sum_probs=81.0
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhh---cCCccEEEEEeeeeeCCc
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIGAVVRGDT 149 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~---~~~yDaVIaLG~VIrGeT 149 (218)
....+|+||.+.--+. .-.+.|.+.|++.|++ + .+.|-|+.-.|--...+++ ..+++.||+.. |..
T Consensus 5 ~~~~~V~IimgS~SD~---~v~~~a~~~L~~~gi~---~-ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A----G~a 73 (174)
T 3lp6_A 5 GERPRVGVIMGSDSDW---PVMADAAAALAEFDIP---A-EVRVVSAHRTPEAMFSYARGAAARGLEVIIAGA----GGA 73 (174)
T ss_dssp -CCCSEEEEESCGGGH---HHHHHHHHHHHHTTCC---E-EEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEE----ESS
T ss_pred CCCCeEEEEECcHHhH---HHHHHHHHHHHHcCCC---E-EEEEECCCCCHHHHHHHHHHHHhCCCCEEEEec----Cch
Confidence 3456899999888876 5567899999999996 3 4779999999988888753 35788776643 666
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCH--HHHHH-h---hCC-----CCCCcHHHHHHHHHHHHHHHhhh
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNM--DQALN-R---AGG-----KSGNKGAEAALTAIEMASLFEHH 216 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~--eQA~~-R---ag~-----k~gnKG~EAA~aAleM~~L~~~~ 216 (218)
.|--=|.. =.+.+|||..=....+. .+++- - ..+ -.-|-|..||.-|.+++.+..+.
T Consensus 74 a~LpgvvA----------~~t~~PVIgVP~~~~~l~G~daLlS~vqmp~GvpVatV~I~~~~nAa~lAa~Il~~~d~~ 141 (174)
T 3lp6_A 74 AHLPGMVA----------AATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNAGLLAVRMLGAANPQ 141 (174)
T ss_dssp CCHHHHHH----------HHCSSCEEEEEECCSSGGGHHHHHHHHCCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hhhHHHHH----------hccCCCEEEeeCCCCCCCCHHHHHHHhhCCCCCeeEEEEcCcchHHHHHHHHHHhCCCHH
Confidence 67543221 23678888543322221 22211 1 111 12347899999999999875544
No 184
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=66.40 E-value=50 Score=27.30 Aligned_cols=91 Identities=13% Similarity=0.177 Sum_probs=53.3
Q ss_pred CCCEEEEEEccc--CHHHHHHHHHHHHHHHHHC----CCCCCCeEEEEeCCcchH---HHHHHHhhhcCCccEEEEEeee
Q 027801 74 EGLRFALVVARF--NELVTKLLLEGALETFKKY----SVKEENIDVVWVPGSFEI---GVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 74 ~~~RIaIV~Srf--n~~It~~Ll~gA~~~L~~~----Gv~~e~I~vv~VPGA~EL---P~aak~L~~~~~yDaVIaLG~V 144 (218)
+..+||++...- ....-..+++++...+++. |+.-..++++......+- --.+++|++..+.|+||. ..
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig--~~ 80 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLG--DF 80 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEE--CS
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEc--CC
Confidence 467999999753 2345556666666555554 232234666655443332 234566776788999873 32
Q ss_pred eeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 145 VRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 145 IrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
+...+..+.++.-+.++|++..
T Consensus 81 -----------~s~~~~~~~~~~~~~~iP~v~~ 102 (358)
T 3hut_A 81 -----------SSTVSMAAGSIYGKEGMPQLSP 102 (358)
T ss_dssp -----------SHHHHHHHHHHHHHHTCCEEES
T ss_pred -----------CcHHHHHHHHHHHHCCCcEEec
Confidence 1122334445555678998874
No 185
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=65.86 E-value=43 Score=28.95 Aligned_cols=84 Identities=15% Similarity=0.077 Sum_probs=48.9
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAV 155 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~V 155 (218)
.|++||+-.....- +.++...+.|++.|++ ++++.--..-+..-.++.+.. .++|.||++| ||=.
T Consensus 30 ~~~~vi~Np~sg~~--~~~~~i~~~l~~~g~~---~~~~~t~~~~~~~~~~~~~~~-~~~d~vvv~G----GDGT----- 94 (332)
T 2bon_A 30 PASLLILNGKSTDN--LPLREAIMLLREEGMT---IHVRVTWEKGDAARYVEEARK-FGVATVIAGG----GDGT----- 94 (332)
T ss_dssp CCEEEEECSSSTTC--HHHHHHHHHHHTTTCC---EEEEECCSTTHHHHHHHHHHH-HTCSEEEEEE----SHHH-----
T ss_pred ceEEEEECCCCCCC--chHHHHHHHHHHcCCc---EEEEEecCcchHHHHHHHHHh-cCCCEEEEEc----cchH-----
Confidence 36777765433221 3446677889988874 555543333344333444433 4699999998 4432
Q ss_pred HHHHHHHHHHhchhcCCce
Q 027801 156 ANSAASGVLSAGVNSGVPC 174 (218)
Q Consensus 156 a~~vs~gLm~lsL~~~vPV 174 (218)
-++++++|++.....++|+
T Consensus 95 l~~v~~~l~~~~~~~~~pl 113 (332)
T 2bon_A 95 INEVSTALIQCEGDDIPAL 113 (332)
T ss_dssp HHHHHHHHHHCCSSCCCEE
T ss_pred HHHHHHHHhhcccCCCCeE
Confidence 2456667775443567884
No 186
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=65.81 E-value=10 Score=30.15 Aligned_cols=98 Identities=16% Similarity=0.043 Sum_probs=57.6
Q ss_pred CCCEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
..+|++|+..-=- ..+.|.=-.-..+.|++.|+. -+....||.-.| |=-+++.+++..++|.||+-|-+ |-| +
T Consensus 12 ~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~--v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~--g~g-~ 86 (169)
T 1y5e_A 12 KEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHK--VTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGT--GIT-K 86 (169)
T ss_dssp CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCE--EEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCC--SSS-T
T ss_pred cCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCe--EeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCC--CCC-C
Confidence 4678888874100 111111112233456667874 466777998876 44566666554589999999998 444 6
Q ss_pred HHHHHHHHHH-----------HHHHhch--hcCCceEE
Q 027801 152 YDAVANSAAS-----------GVLSAGV--NSGVPCIF 176 (218)
Q Consensus 152 ~e~Va~~vs~-----------gLm~lsL--~~~vPVif 176 (218)
+|+..+++.. -+-.+++ +-+.|.++
T Consensus 87 ~D~t~ea~~~~~~~~l~g~~~~~~~~~~~~~pG~~~~~ 124 (169)
T 1y5e_A 87 RDVTIEAVSALLDKEIVGFGELFRMISYLEDIGSSAML 124 (169)
T ss_dssp TCCHHHHHHTTCSEECHHHHHHHHHHHHHHSSGGGGGG
T ss_pred CCCcHHHHHHHcCCCCCChHHHHhhhhcccCCCcceec
Confidence 6666665553 2335555 55666543
No 187
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=65.80 E-value=47 Score=27.16 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=48.1
Q ss_pred CCEEEEEEcccC--HHHHHHHHHHHHHHHHH---CC-CCCCCeEEEEeCCcchH---HHHHHHhhhcCCccEEEEEeeee
Q 027801 75 GLRFALVVARFN--ELVTKLLLEGALETFKK---YS-VKEENIDVVWVPGSFEI---GVVAQQLGKSGKYTAVLCIGAVV 145 (218)
Q Consensus 75 ~~RIaIV~Srfn--~~It~~Ll~gA~~~L~~---~G-v~~e~I~vv~VPGA~EL---P~aak~L~~~~~yDaVIaLG~VI 145 (218)
..+||++...-+ ......+++++...+++ .| +.-..++++......+- --.+++|++ .++|+|| |..
T Consensus 2 ~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~-~~v~~ii--g~~- 77 (346)
T 1usg_A 2 DIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVN-DGIKYVI--GHL- 77 (346)
T ss_dssp CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHH-TTCCEEE--CCS-
T ss_pred cEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHh-CCCCEEE--cCC-
Confidence 468999987643 34566677777666666 22 21124555544333332 234455654 6899986 432
Q ss_pred eCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 146 RGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 146 rGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
.+. .+..+.++.-+.++|++.-
T Consensus 78 --~s~--------~~~~~~~~~~~~~ip~v~~ 99 (346)
T 1usg_A 78 --CSS--------STQPASDIYEDEGILMISP 99 (346)
T ss_dssp --SHH--------HHHHHHHHHHHHTCEEEEC
T ss_pred --CcH--------HHHHHHHHHHHCCCeEEee
Confidence 111 1223344445568887753
No 188
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=64.95 E-value=26 Score=29.18 Aligned_cols=121 Identities=16% Similarity=0.195 Sum_probs=78.7
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhh---cCCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~---~~~yDaVIaLG~VIrGeT~H 151 (218)
..||+||.+.--+. .-.+.|.+.|++.|++ + .+.|-++.-.|--...+++ ..+++.||+.. |...|
T Consensus 12 ~~~V~IimGS~SD~---~v~~~a~~~L~~~Gi~---~-ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A----G~aa~ 80 (174)
T 3kuu_A 12 GVKIAIVMGSKSDW---ATMQFAADVLTTLNVP---F-HVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGN----GGAAH 80 (174)
T ss_dssp CCCEEEEESSGGGH---HHHHHHHHHHHHTTCC---E-EEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEE----ESSCC
T ss_pred CCcEEEEECcHHHH---HHHHHHHHHHHHcCCC---E-EEEEEcccCCHHHHHHHHHHHHhCCCcEEEEEC----Chhhh
Confidence 45799999888766 5567899999999996 3 4779999999988888864 36688776643 55666
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCC---HHHHHHhhC---C-----CCCC--cHHHHHHHHHHHHHHHhhh
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDN---MDQALNRAG---G-----KSGN--KGAEAALTAIEMASLFEHH 216 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n---~eQA~~Rag---~-----k~gn--KG~EAA~aAleM~~L~~~~ 216 (218)
--=|. +=.+.+|||..=....+ .+--+.-.. + -.-+ -|..||.-|.+++.+..+.
T Consensus 81 Lpgvv----------A~~t~~PVIgVP~~~~~l~G~dsLlS~vqmP~GvPVatV~I~~a~~~nAa~lAa~ILa~~d~~ 148 (174)
T 3kuu_A 81 LPGML----------AAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILALHDTE 148 (174)
T ss_dssp HHHHH----------HHTCSSCEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSSHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHH----------HhccCCCEEEeeCCCCCCCCHHHHHHhhhCCCCCeeEEEEeCCccchHHHHHHHHHHcCCCHH
Confidence 54222 22467888754332221 222222211 1 1224 4678999999998875543
No 189
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=64.60 E-value=6.8 Score=33.48 Aligned_cols=86 Identities=7% Similarity=0.032 Sum_probs=57.0
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHH--hhhcCCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQ--LGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~--L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
..||+||... +......+.++..+.|+++|+. .+....+ +|..+.--.+++ + +..+.|+|++.+.-
T Consensus 141 ~~~iaii~~~-~~~~g~~~~~~~~~~l~~~G~~--v~~~~~~~~~~~d~~~~~~~~~l-~~~~~dav~~~~~~------- 209 (391)
T 3eaf_A 141 QGKLALAYDS-KVAYSRSPIGAIKKAAPSLGLQ--VVGDYDLPLRATEADAERIAREM-LAADPDYVWCGNTI------- 209 (391)
T ss_dssp SEEEEEEECT-TCHHHHTTHHHHHHHTGGGTEE--EEEEEECCTTCCHHHHHHHHHHH-HTTCCSEEEECSCH-------
T ss_pred CCEEEEEEec-CChhHHHHHHHHHHHHHHcCCc--eeeeeccCCCCcCHHHHHHHHHH-HHcCCCEEEEecCc-------
Confidence 4689999987 7777888999999999999974 2222333 466676656666 5 45689999886541
Q ss_pred HHHHHHHHHHHHHHhchhcCCceE
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
-.+..+.+.+.+..+ .+|++
T Consensus 210 --~~~~~~~~~~~~~g~--~~~~~ 229 (391)
T 3eaf_A 210 --SSCSLLGRAMAKVGL--DAFLL 229 (391)
T ss_dssp --HHHHHHHHHHHHHTC--CCEEE
T ss_pred --HHHHHHHHHHHHCCC--CceEE
Confidence 123345555555554 45653
No 190
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=64.51 E-value=30 Score=30.97 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=36.4
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHC------CCCCCCeEEEEeCC---cchHHH--HHHHhhhcCC--c---cEEE
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKY------SVKEENIDVVWVPG---SFEIGV--VAQQLGKSGK--Y---TAVL 139 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~------Gv~~e~I~vv~VPG---A~ELP~--aak~L~~~~~--y---DaVI 139 (218)
.|+.||... .+.+..++...+.|++. |+. +.++.+|+ .-.+.. -+-..+...+ + |.||
T Consensus 37 ~k~liVtd~---~v~~~~~~~v~~~L~~~~~~~~~g~~---~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iI 110 (393)
T 1sg6_A 37 TTYVLVTDT---NIGSIYTPSFEEAFRKRAAEITPSPR---LLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVI 110 (393)
T ss_dssp SEEEEEEEH---HHHHHHHHHHHHHHHHHHHHSSSCCE---EEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEE
T ss_pred CeEEEEECC---cHHHHHHHHHHHHHHhhhccccCCce---eEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEE
Confidence 588888764 33334566666777665 552 45567887 222222 2222234455 7 9999
Q ss_pred EEee
Q 027801 140 CIGA 143 (218)
Q Consensus 140 aLG~ 143 (218)
++|=
T Consensus 111 alGG 114 (393)
T 1sg6_A 111 ALGG 114 (393)
T ss_dssp EEES
T ss_pred EECC
Confidence 9983
No 191
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=64.06 E-value=15 Score=32.20 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=40.5
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCC-cchHHHHHHHhhhcCCccEEEEEe
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPG-SFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPG-A~ELP~aak~L~~~~~yDaVIaLG 142 (218)
.|+.||..+.-. +...+...+.|++.|+. +.++. +|. .+|.=--+ ..++..++|.||++|
T Consensus 35 ~~~livtd~~~~---~~~~~~v~~~L~~~g~~---~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavG 96 (354)
T 3ce9_A 35 KRVSLYFGEGIY---ELFGETIEKSIKSSNIE---IEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIG 96 (354)
T ss_dssp SEEEEEEETTHH---HHHHHHHHHHHHTTTCE---EEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEE
T ss_pred CeEEEEECccHH---HHHHHHHHHHHHHcCCe---EEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEEC
Confidence 388888865432 34667778888888874 44554 554 55544444 555668899999998
No 192
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=63.78 E-value=11 Score=29.24 Aligned_cols=40 Identities=10% Similarity=-0.042 Sum_probs=30.3
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS 119 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA 119 (218)
.||+||...-+ --++.|.+...+.|++.|+ +++++.++..
T Consensus 6 ~kilii~~S~~-g~T~~la~~i~~~l~~~g~---~v~~~~l~~~ 45 (200)
T 2a5l_A 6 PYILVLYYSRH-GATAEMARQIARGVEQGGF---EARVRTVPAV 45 (200)
T ss_dssp CEEEEEECCSS-SHHHHHHHHHHHHHHHTTC---EEEEEBCCCE
T ss_pred ceEEEEEeCCC-ChHHHHHHHHHHHHhhCCC---EEEEEEhhhc
Confidence 38888887754 3588888888888988886 4777777664
No 193
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=63.38 E-value=35 Score=28.86 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=51.5
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEE-EeCCcchHHH----HHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVV-WVPGSFEIGV----VAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv-~VPGA~ELP~----aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
.|||+|.+.-...+ ..-++|..+.++++|.+ +++. ...|.|.-|- +++.|++. ++|+|+|..
T Consensus 130 r~Ig~i~g~~~~~~-~~r~~Gf~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~a~~ll~~-~~daI~~~~-------- 196 (318)
T 2fqx_A 130 SAVGFIVGMELGMM-PLFEAGFEAGVKAVDPD---IQVVVEVANTFSDPQKGQALAAKLYDS-GVNVIFQVA-------- 196 (318)
T ss_dssp CEEEEEESCCSTTT-HHHHHHHHHHHHHHCTT---CEEEEEECSCSSCHHHHHHHHHHHHHT-TCCEEEEEC--------
T ss_pred cEEEEEeCcccHHH-HHHHHHHHHHHHHHCCC---CEEEEEEccCccCHHHHHHHHHHHHHC-CCcEEEECC--------
Confidence 59999987644333 34579999999999874 3332 2467774332 34555554 589988752
Q ss_pred hHHHHHHHHHHHHHHhchh
Q 027801 151 HYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~ 169 (218)
|.++..+.+++.+..++
T Consensus 197 --d~~a~Gv~~a~~e~g~~ 213 (318)
T 2fqx_A 197 --GGTGNGVIKEARDRRLN 213 (318)
T ss_dssp --GGGHHHHHHHHHHHHHT
T ss_pred --CCCchHHHHHHHhhhhc
Confidence 33566777777777665
No 194
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=63.38 E-value=21 Score=28.98 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=42.5
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.+++||+|+....| ..+ -.+.|++.|+ +++.+|-. +.+ ..||+||.-|-- .+...
T Consensus 21 ~~~~~I~il~~~~~--~~~-----~~~~l~~~G~-----~~~~~~~~-------~~l---~~~Dglil~GG~---~~~~~ 75 (219)
T 1q7r_A 21 QSNMKIGVLGLQGA--VRE-----HVRAIEACGA-----EAVIVKKS-------EQL---EGLDGLVLPGGE---STTMR 75 (219)
T ss_dssp CCCCEEEEESCGGG--CHH-----HHHHHHHTTC-----EEEEECSG-------GGG---TTCSEEEECCCC---HHHHH
T ss_pred CCCCEEEEEeCCCC--cHH-----HHHHHHHCCC-----EEEEECCH-------HHH---hhCCEEEECCCC---hHHHH
Confidence 45689999954332 222 1366777776 34445531 112 479999988852 12222
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
++-.+.-...+++-.++.++||. ||
T Consensus 76 ~~~~~~~~~~~i~~~~~~~~Pil-GI 100 (219)
T 1q7r_A 76 RLIDRYGLMEPLKQFAAAGKPMF-GT 100 (219)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCEE-EE
T ss_pred HHhhhhHHHHHHHHHHHcCCeEE-EE
Confidence 22212222344555567789964 44
No 195
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=61.47 E-value=29 Score=31.38 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=41.4
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH------HHHHHhhhc--CCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG------VVAQQLGKS--GKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP------~aak~L~~~--~~yDaVIaLG~ 143 (218)
.|+.||....-.. +.+...+.|++.|+. +.++.+|+--+-| -+++.+.+. .+.|.||++|=
T Consensus 44 ~rvlIVtd~~v~~----~~~~v~~~L~~~g~~---~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGG 112 (368)
T 3qbe_A 44 HKVAVVHQPGLAE----TAEEIRKRLAGKGVD---AHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGG 112 (368)
T ss_dssp SEEEEEECGGGHH----HHHHHHHHHHHTTCE---EEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEES
T ss_pred CEEEEEECccHHH----HHHHHHHHHHhcCCc---ceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC
Confidence 6899998776444 367788889998874 6677788754322 233344333 46899999983
No 196
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=61.27 E-value=29 Score=28.36 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=75.4
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhc----CCccEEEEEeeeeeCCchh
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKS----GKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~----~~yDaVIaLG~VIrGeT~H 151 (218)
.+|+||.+.--+. .-.+.|.+.|++.|++ + .+.|-|+.-+|--...++++ ++++.||+.. |...|
T Consensus 3 ~~V~Iimgs~SD~---~v~~~a~~~l~~~gi~---~-ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~A----G~aa~ 71 (159)
T 3rg8_A 3 PLVIILMGSSSDM---GHAEKIASELKTFGIE---Y-AIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIA----GRSNA 71 (159)
T ss_dssp CEEEEEESSGGGH---HHHHHHHHHHHHTTCE---E-EEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEEC----CSSCC
T ss_pred CeEEEEECcHHHH---HHHHHHHHHHHHcCCC---E-EEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEEC----Cchhh
Confidence 4799999887765 5567899999999996 3 47799999999888777632 3589888754 55666
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCC---HHHHHHhhC---CC---CCCcHHHHHHHHHHHHHHHhhh
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDN---MDQALNRAG---GK---SGNKGAEAALTAIEMASLFEHH 216 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n---~eQA~~Rag---~k---~gnKG~EAA~aAleM~~L~~~~ 216 (218)
--=+.. =.+.+|||-.=....+ ++ -+.-.. +- .-+-|..||.-|.+++.+..+.
T Consensus 72 LpgvvA----------~~t~~PVIgVP~~~~~l~G~d-LlS~vqmp~GvpVatv~~~~nAa~lA~~Il~~~d~~ 134 (159)
T 3rg8_A 72 LSGFVD----------GFVKGATIACPPPSDSFAGAD-IYSSLRMPSGISPALVLEPKNAALLAARIFSLYDKE 134 (159)
T ss_dssp HHHHHH----------HHSSSCEEECCCCCCGGGGTH-HHHHHCCCTTCCCEECCSHHHHHHHHHHHHTTTCHH
T ss_pred hHHHHH----------hccCCCEEEeeCCCCCCCCcc-HHHHHhCCCCCceEEecCchHHHHHHHHHHhCCCHH
Confidence 542221 1256677632111111 12 221111 10 1267889999999988765443
No 197
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=60.88 E-value=16 Score=29.10 Aligned_cols=97 Identities=13% Similarity=0.019 Sum_probs=58.2
Q ss_pred CCCEEEEEEcc-cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchh
Q 027801 74 EGLRFALVVAR-FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 74 ~~~RIaIV~Sr-fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H 151 (218)
..+|++|+..- --..+.|.=-.-..+.|++.|+. .+....||.-.| |=-+++.+++.+++|.||+-|-+ |-| +
T Consensus 9 ~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~--v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~--g~~-~ 83 (172)
T 1mkz_A 9 IPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHH--VVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGT--GLT-E 83 (172)
T ss_dssp CCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCE--EEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCC--SSS-T
T ss_pred CCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCe--EeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCC--CCC-C
Confidence 45789888741 11122222222345567778874 456677998876 44566666655579999999998 433 4
Q ss_pred HHHHHHHHHH-----------HHHHhchhc-CCceE
Q 027801 152 YDAVANSAAS-----------GVLSAGVNS-GVPCI 175 (218)
Q Consensus 152 ~e~Va~~vs~-----------gLm~lsL~~-~vPVi 175 (218)
+|+..+++.. .+-.++++. +.|..
T Consensus 84 ~D~t~ea~~~~~~~~l~g~~~~~~~i~~~p~G~~~~ 119 (172)
T 1mkz_A 84 GDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTL 119 (172)
T ss_dssp TCCHHHHHGGGCSEECHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCHHHHHHHHhcccCCccHHHHHHHhhcccCccee
Confidence 6666555543 244556654 66654
No 198
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=60.60 E-value=16 Score=30.89 Aligned_cols=65 Identities=8% Similarity=0.043 Sum_probs=45.3
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC-CcchHHHHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP-GSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP-GA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
...||+||.. +......+.++..+.|+++|+. .+....+| |..+.--.++++. ..+.|+|++.+.
T Consensus 141 g~~~vaii~~--~~~~g~~~~~~~~~~~~~~G~~--v~~~~~~~~~~~d~~~~l~~i~-~~~~d~v~~~~~ 206 (379)
T 3n0w_A 141 GYKTWFLMLP--DAAYGDLMNAAIRRELTAGGGQ--IVGSVRFPFETQDFSSYLLQAK-ASGAQLIVSTSG 206 (379)
T ss_dssp TCCEEEEEEE--SSHHHHHHHHHHHHHHHHHTCE--EEEEEEECTTCCCCHHHHHHHH-HHTCSEEEECCC
T ss_pred CCcEEEEEec--ccchhHHHHHHHHHHHHHcCCE--EEEEEeCCCCCCCHHHHHHHHH-HCCCCEEEEecc
Confidence 3568999965 4556778889999999999974 23333444 7777655666664 356899987543
No 199
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=60.41 E-value=22 Score=29.96 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=59.5
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch--HHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE--IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E--LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
.+|.++++. ..|.+-+.+.+.+++. ..++..+-|.|| ++. ++.+.+.+++|.||+ ||.|..+
T Consensus 13 ~~ii~i~~~------~~L~~~~~~i~~e~~~---~~~I~vi~~~le~av~~-a~~~~~~~~~dVIIS-----RGgta~~- 76 (225)
T 2pju_A 13 KPVIWTVSV------TRLFELFRDISLEFDH---LANITPIQLGFEKAVTY-IRKKLANERCDAIIA-----AGSNGAY- 76 (225)
T ss_dssp CCEEEEECC------HHHHHHHHHHHTTTTT---TCEEEEECCCHHHHHHH-HHHHTTTSCCSEEEE-----EHHHHHH-
T ss_pred CCEEEEEch------HHHHHHHHHHHHhhCC---CceEEEecCcHHHHHHH-HHHHHhcCCCeEEEe-----CChHHHH-
Confidence 356666664 2455555566665554 356666778888 444 455556667998887 4545432
Q ss_pred HHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCCC
Q 027801 154 AVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGK 194 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~k 194 (218)
| + -..++||+.-=+|..+.-+|+.+|...
T Consensus 77 ---------L-r--~~~~iPVV~I~vs~~Dil~aL~~a~~~ 105 (225)
T 2pju_A 77 ---------L-K--SRLSVPVILIKPSGYDVLQFLAKAGKL 105 (225)
T ss_dssp ---------H-H--TTCSSCEEEECCCHHHHHHHHHHTTCT
T ss_pred ---------H-H--hhCCCCEEEecCCHHHHHHHHHHHHhh
Confidence 2 2 235799999999999999999998643
No 200
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=60.18 E-value=22 Score=31.41 Aligned_cols=110 Identities=18% Similarity=0.119 Sum_probs=62.7
Q ss_pred CCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHH-hh---------hcCCccEEEE
Q 027801 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQ-LG---------KSGKYTAVLC 140 (218)
Q Consensus 72 ~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~-L~---------~~~~yDaVIa 140 (218)
+-..+||||+--.=.+.-++.++...+ .. .+.++++..+ ++.-+-|-.... |. +..+|||+|.
T Consensus 32 ~irplkI~ILnlmp~k~~te~qf~rlL---~~---~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglII 105 (301)
T 2vdj_A 32 DIRALKIAILNLMPTKQETEAQLLRLI---GN---TPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLII 105 (301)
T ss_dssp TSCCEEEEEECCCSSHHHHHHHHHHHH---TC---SSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEE
T ss_pred CCCCceEEEEeCCCCcCchHHHHHHHh---cC---CCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEE
Confidence 467899999998777766665543332 22 2234554332 455564432211 11 2368999999
Q ss_pred Eeeee-eCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH-HHhhCC
Q 027801 141 IGAVV-RGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA-LNRAGG 193 (218)
Q Consensus 141 LG~VI-rGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA-~~Rag~ 193 (218)
.|.-+ ..+...+.|+-. ...+++-..+.++|+..-=+. .|+ +..++|
T Consensus 106 TGap~~~~~~ed~~yw~e--l~~li~~~~~~~~~~lgIC~G----aQ~~l~~~~G 154 (301)
T 2vdj_A 106 TGAPVETLSFEEVDYWEE--LKRIMEYSKTNVTSTLHICWG----AQAGLYHHYG 154 (301)
T ss_dssp CCCTTTTSCGGGSTTHHH--HHHHHHHHHHHEEEEEEETHH----HHHHHHHHHC
T ss_pred CCCCCcCCCcccCchHHH--HHHHHHHHHHcCCcEEEEcHH----HHHHHHHhCC
Confidence 99976 345555666633 556777777888888765444 455 555554
No 201
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=59.62 E-value=32 Score=24.69 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhc
Q 027801 88 LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAG 167 (218)
Q Consensus 88 ~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~ls 167 (218)
.-.+..++.+.+.+++.|++.+.++.....| +..-.+-+.++..++|-|| +|.= |.+.-.+++-..++..+.+
T Consensus 66 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~g--~~~~~I~~~a~~~~~dliV-~G~~--~~~~~~~~~~Gs~~~~vl~-- 138 (147)
T 3hgm_A 66 DYATEIAVQAKTRATELGVPADKVRAFVKGG--RPSRTIVRFARKRECDLVV-IGAQ--GTNGDKSLLLGSVAQRVAG-- 138 (147)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEES--CHHHHHHHHHHHTTCSEEE-ECSS--CTTCCSCCCCCHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhcCCCccceEEEEecC--CHHHHHHHHHHHhCCCEEE-EeCC--CCccccceeeccHHHHHHh--
Confidence 5567888999999999998754557777778 4455555666777898654 6663 4333333334445554444
Q ss_pred hhcCCceE
Q 027801 168 VNSGVPCI 175 (218)
Q Consensus 168 L~~~vPVi 175 (218)
+..+||.
T Consensus 139 -~~~~pVl 145 (147)
T 3hgm_A 139 -SAHCPVL 145 (147)
T ss_dssp -HCSSCEE
T ss_pred -hCCCCEE
Confidence 3456764
No 202
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=59.48 E-value=13 Score=28.50 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=47.8
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
.+..|..|...+.- ....|...|++.+.+-.+..+..-+.=+++.+.++++.|.+||+
T Consensus 32 ~~r~ilwi~pp~~~---------~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~ 89 (119)
T 1ofu_X 32 DARWLTLIAPPASL---------THEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVS 89 (119)
T ss_dssp SSSEEEEESCCTTS---------CHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCccEEEECCCCCC---------CHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEE
Confidence 34567777765421 24578889999999999999999999999999999999999987
No 203
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=59.26 E-value=72 Score=26.46 Aligned_cols=92 Identities=15% Similarity=0.180 Sum_probs=59.1
Q ss_pred CCCEEEEEEcc--cCHHHHHHHHHHHHHHHHHCC-CCCCCeEEEEeCCcch---HHHHHHHhhhcCCccEEEEEeeeeeC
Q 027801 74 EGLRFALVVAR--FNELVTKLLLEGALETFKKYS-VKEENIDVVWVPGSFE---IGVVAQQLGKSGKYTAVLCIGAVVRG 147 (218)
Q Consensus 74 ~~~RIaIV~Sr--fn~~It~~Ll~gA~~~L~~~G-v~~e~I~vv~VPGA~E---LP~aak~L~~~~~yDaVIaLG~VIrG 147 (218)
.+.|||++... -...+...+++++...+++.+ +.-..++++..-...+ ---++++|++.++.|+||. ..
T Consensus 15 ~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG--~~--- 89 (366)
T 3td9_A 15 KVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPTVLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIG--EV--- 89 (366)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEE--CS---
T ss_pred ceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhhcCCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEc--cC---
Confidence 56799999854 346778889999999999876 2222355655544333 2344567777778999884 32
Q ss_pred CchhHHHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 148 DTTHYDAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 148 eT~H~e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
+...+..+.++.-+.++|++..-
T Consensus 90 --------~s~~~~~~~~~~~~~~iP~i~~~ 112 (366)
T 3td9_A 90 --------ASAHSLAIAPIAEENKVPMVTPA 112 (366)
T ss_dssp --------SHHHHHHHHHHHHHTTCCEEESS
T ss_pred --------CchhHHHHHHHHHhCCCeEEecC
Confidence 12234445566667899998754
No 204
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=58.48 E-value=39 Score=27.98 Aligned_cols=120 Identities=10% Similarity=0.113 Sum_probs=77.9
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhh---cCCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~---~~~yDaVIaLG~VIrGeT~H 151 (218)
..+|+||.+.--+. .-.+.|.+.|++.|++ + .+.|-|+.-.|--..++++ ..+++.||+.. |...|
T Consensus 11 ~~~V~IimGS~SD~---~v~~~a~~~L~~~Gi~---~-dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~A----G~aa~ 79 (170)
T 1xmp_A 11 KSLVGVIMGSTSDW---ETMKYACDILDELNIP---Y-EKKVVSAHRTPDYMFEYAETARERGLKVIIAGA----GGAAH 79 (170)
T ss_dssp CCSEEEEESSGGGH---HHHHHHHHHHHHTTCC---E-EEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEE----ESSCC
T ss_pred CCcEEEEECcHHHH---HHHHHHHHHHHHcCCC---E-EEEEEeccCCHHHHHHHHHHHHhCCCcEEEEEC----Cchhh
Confidence 35799999888776 5567899999999996 4 4679999999988888764 35588776643 55666
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCC--HHHH-HH--h--hCC----CCCC--cHHHHHHHHHHHHHHHhh
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDN--MDQA-LN--R--AGG----KSGN--KGAEAALTAIEMASLFEH 215 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n--~eQA-~~--R--ag~----k~gn--KG~EAA~aAleM~~L~~~ 215 (218)
--=| ++-.+.+|||..=....+ -.++ +. . .|. -.-+ -|..||..|.+++.+...
T Consensus 80 Lpgv----------vA~~t~~PVIgVP~~~~~l~G~daLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla~~d~ 146 (170)
T 1xmp_A 80 LPGM----------VAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHD 146 (170)
T ss_dssp HHHH----------HHTTCCSCEEEEEECCTTTTTHHHHHHHHCCCTTCCCEECCSSHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHH----------HHhccCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHHHHHccCCH
Confidence 5422 223467788754443222 1222 11 1 111 1234 678999999999876544
No 205
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=57.80 E-value=38 Score=29.73 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=37.5
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHH---hhhcCCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQ---LGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~---L~~~~~yDaVIaLG~ 143 (218)
.|+.||.... +.+.+.+...+.|++.|+. +.+...+|--..+.+ .+ .++..++|.||++|=
T Consensus 32 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~---~~~~~~~ge~~~~~v-~~~~~~~~~~~~d~IIavGG 95 (370)
T 1jq5_A 32 NKTVVIADEI---VWKIAGHTIVNELKKGNIA---AEEVVFSGEASRNEV-ERIANIARKAEAAIVIGVGG 95 (370)
T ss_dssp SEEEEEECHH---HHHHTHHHHHHHHHTTTCE---EEEEECCSSCBHHHH-HHHHHHHHHTTCSEEEEEES
T ss_pred CeEEEEEChH---HHHHHHHHHHHHHHHcCCe---EEEEeeCCCCCHHHH-HHHHHHHHhcCCCEEEEeCC
Confidence 6898887653 3335677788888888874 332334552222222 22 234567999999983
No 206
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=57.11 E-value=9.2 Score=23.13 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=16.5
Q ss_pred EcccCHHHHHHHHHHHHHHHHH
Q 027801 82 VARFNELVTKLLLEGALETFKK 103 (218)
Q Consensus 82 ~Srfn~~It~~Ll~gA~~~L~~ 103 (218)
++||.+.-.+.|++.|++++..
T Consensus 6 vtrfdekqieelldncietfva 27 (31)
T 4h62_V 6 VTRFDEKQIEELLDNCIETFVA 27 (31)
T ss_dssp ----CHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999864
No 207
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=55.89 E-value=46 Score=27.84 Aligned_cols=121 Identities=9% Similarity=0.092 Sum_probs=78.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhh---cCCccEEEEEeeeeeCCchh
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIGAVVRGDTTH 151 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~---~~~yDaVIaLG~VIrGeT~H 151 (218)
..+|+||.+.--+. .-.+.|.+.|++.|++ + -+.|-|+.-.|--...+++ ..+++.||+.. |...|
T Consensus 21 ~~~V~IimGS~SD~---~v~~~a~~~L~~~Gi~---~-dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~A----G~aa~ 89 (182)
T 1u11_A 21 APVVGIIMGSQSDW---ETMRHADALLTELEIP---H-ETLIVSAHRTPDRLADYARTAAERGLNVIIAGA----GGAAH 89 (182)
T ss_dssp CCSEEEEESSGGGH---HHHHHHHHHHHHTTCC---E-EEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEE----ESSCC
T ss_pred CCEEEEEECcHHHH---HHHHHHHHHHHHcCCC---e-EEEEEcccCCHHHHHHHHHHHHhCCCcEEEEec----Cchhh
Confidence 35799999888776 5567899999999996 4 5679999999988888764 35588766643 56666
Q ss_pred HHHHHHHHHHHHHHhchhcCCceEEEEcCCCC--HHHH-HHh----hCC----CCCC--cHHHHHHHHHHHHHHHhhh
Q 027801 152 YDAVANSAASGVLSAGVNSGVPCIFGVLTCDN--MDQA-LNR----AGG----KSGN--KGAEAALTAIEMASLFEHH 216 (218)
Q Consensus 152 ~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n--~eQA-~~R----ag~----k~gn--KG~EAA~aAleM~~L~~~~ 216 (218)
--=|.. -.+.+|||..=....+ -.++ +.- .|. -.-+ -|..||.-|.+++.+....
T Consensus 90 LpgvvA----------~~t~~PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla~~d~~ 157 (182)
T 1u11_A 90 LPGMCA----------AWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLAASILALYNPA 157 (182)
T ss_dssp HHHHHH----------HHCSSCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHGGGCHH
T ss_pred hHHHHH----------hccCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHHHccCCHH
Confidence 543321 2357788754443222 1222 111 111 1234 6789999999998775543
No 208
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=53.78 E-value=20 Score=31.67 Aligned_cols=79 Identities=20% Similarity=0.218 Sum_probs=51.6
Q ss_pred HHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCc--hhHHHHHHHHHHHHHHhchhcCCc
Q 027801 96 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDT--THYDAVANSAASGVLSAGVNSGVP 173 (218)
Q Consensus 96 gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT--~H~e~Va~~vs~gLm~lsL~~~vP 173 (218)
.+.+.|.+.|+. +-.+.+|- |..++++.+ -++|+|+.+|..|-+.. .-+++| +-+.+ +.++|
T Consensus 126 ~aa~~L~~~Gf~---Vlpy~~dd----~~~akrl~~-~G~~aVmPlg~pIGsG~Gi~~~~lI-----~~I~e---~~~vP 189 (265)
T 1wv2_A 126 KAAEQLVKDGFD---VMVYTSDD----PIIARQLAE-IGCIAVMPLAGLIGSGLGICNPYNL-----RIILE---EAKVP 189 (265)
T ss_dssp HHHHHHHTTTCE---EEEEECSC----HHHHHHHHH-SCCSEEEECSSSTTCCCCCSCHHHH-----HHHHH---HCSSC
T ss_pred HHHHHHHHCCCE---EEEEeCCC----HHHHHHHHH-hCCCEEEeCCccCCCCCCcCCHHHH-----HHHHh---cCCCC
Confidence 455667776763 11134444 888888854 46999999999774431 236666 33333 45789
Q ss_pred eEE--EEcCCCCHHHHHHh
Q 027801 174 CIF--GVLTCDNMDQALNR 190 (218)
Q Consensus 174 Vif--GVLT~~n~eQA~~R 190 (218)
|+. ||-|+++..+|++-
T Consensus 190 VI~eGGI~TPsDAa~AmeL 208 (265)
T 1wv2_A 190 VLVDAGVGTASDAAIAMEL 208 (265)
T ss_dssp BEEESCCCSHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHc
Confidence 887 68888888888775
No 209
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=53.06 E-value=24 Score=30.39 Aligned_cols=70 Identities=11% Similarity=0.066 Sum_probs=40.8
Q ss_pred CcchHHHH---HHHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 118 GSFEIGVV---AQQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 118 GA~ELP~a---ak~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
|..+.+.. ++.+++..+.||++++|.- ||..+... =-.++.+...+. ....+||+.|+-+ ++.+++++.+
T Consensus 19 g~iD~~~l~~lv~~li~~~Gv~gl~~~Gtt--GE~~~Ls~~Er~~v~~~~~~~-~~grvpviaGvg~-~~t~~ai~la 92 (293)
T 1f6k_A 19 GTINEKGLRQIIRHNIDKMKVDGLYVGGST--GENFMLSTEEKKEIFRIAKDE-AKDQIALIAQVGS-VNLKEAVELG 92 (293)
T ss_dssp SCBCHHHHHHHHHHHHHTSCCSEEEESSGG--GTGGGSCHHHHHHHHHHHHHH-HTTSSEEEEECCC-SCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhhCCCcEEEeCccc--cchhhCCHHHHHHHHHHHHHH-hCCCCeEEEecCC-CCHHHHHHHH
Confidence 44554433 3445543689999999986 87665311 011223333332 2347999999866 5666666554
No 210
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=52.55 E-value=77 Score=24.35 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=53.4
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDA 154 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~ 154 (218)
..||+||...-+ -=|+.|.+...+.|.+.|+ +++++.++-..+..-....+ .+||+|| +|+-+-+....
T Consensus 4 ~~kv~IvY~S~~-GnT~~iA~~ia~~l~~~g~---~v~~~~~~~~~~~~~~~~~~---~~~d~ii-~Gspty~g~~p--- 72 (159)
T 3fni_A 4 ETSIGVFYVSEY-GYSDRLAQAIINGITKTGV---GVDVVDLGAAVDLQELRELV---GRCTGLV-IGMSPAASAAS--- 72 (159)
T ss_dssp CCEEEEEECTTS-TTHHHHHHHHHHHHHHTTC---EEEEEESSSCCCHHHHHHHH---HTEEEEE-EECCBTTSHHH---
T ss_pred CCEEEEEEECCC-hHHHHHHHHHHHHHHHCCC---eEEEEECcCcCCHHHHHHHH---HhCCEEE-EEcCcCCCCcc---
Confidence 358899987665 3366777777777888887 37888887542333333333 3688665 56655554322
Q ss_pred HHHHHHHHHHHhchhcCCceE-EE
Q 027801 155 VANSAASGVLSAGVNSGVPCI-FG 177 (218)
Q Consensus 155 Va~~vs~gLm~lsL~~~vPVi-fG 177 (218)
. ......|....+. ++|+. ||
T Consensus 73 ~-~~~l~~l~~~~~~-~k~va~fg 94 (159)
T 3fni_A 73 I-QGALSTILGSVNE-KQAVGIFE 94 (159)
T ss_dssp H-HHHHHHHHHHCCT-TSEEEEEC
T ss_pred H-HHHHHHHHhhccc-CCEEEEEE
Confidence 2 4455556555554 56653 44
No 211
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=52.12 E-value=18 Score=30.68 Aligned_cols=44 Identities=18% Similarity=0.350 Sum_probs=31.4
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
+||+||.- -.+ -...+++...+.|+++|++ + ...++|.||++|=
T Consensus 1 mki~ii~n-~~~-~~~~~~~~l~~~l~~~g~~-----v-----------------~~~~~D~vv~lGG 44 (272)
T 2i2c_A 1 MKYMITSK-GDE-KSDLLRLNMIAGFGEYDME-----Y-----------------DDVEPEIVISIGG 44 (272)
T ss_dssp CEEEEEEC-CSH-HHHHHHHHHHHHHTTSSCE-----E-----------------CSSSCSEEEEEES
T ss_pred CEEEEEEC-CCH-HHHHHHHHHHHHHHHCCCE-----e-----------------CCCCCCEEEEEcC
Confidence 47888877 233 3456778888889988873 2 0357999999983
No 212
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=52.09 E-value=1e+02 Score=25.58 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=53.5
Q ss_pred CCCCEEEEEEcc--cCHHHHHHHHHHHHHHHHHC----CCCCCCeEEEEeCCcchH---HHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVAR--FNELVTKLLLEGALETFKKY----SVKEENIDVVWVPGSFEI---GVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Sr--fn~~It~~Ll~gA~~~L~~~----Gv~~e~I~vv~VPGA~EL---P~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..|||++... -.......+++++...+++. |+.-..++++..-...+- --++++|++..++|+||. .
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig--~ 80 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLT--V 80 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEC--C
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEe--c
Confidence 456899999975 34555566666666655553 233345777766544432 345567776678888763 2
Q ss_pred eeeCCchhHHHHHHHHHHHHHH--hchhcCCceEEE
Q 027801 144 VVRGDTTHYDAVANSAASGVLS--AGVNSGVPCIFG 177 (218)
Q Consensus 144 VIrGeT~H~e~Va~~vs~gLm~--lsL~~~vPVifG 177 (218)
. +...+..+.+ +.-+.++|++..
T Consensus 81 ~-----------~s~~~~~~~~~~~~~~~~iP~v~~ 105 (364)
T 3lop_A 81 V-----------GTANVEALMREGVLAEARLPLVGP 105 (364)
T ss_dssp C-----------CHHHHHHHHHTTHHHHHTCCEESC
T ss_pred C-----------CCHHHHhhCchhhHHhcCCcEEEc
Confidence 2 1123344455 555678998754
No 213
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=51.60 E-value=25 Score=31.74 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=34.3
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHH--hhhcCCccEEEEEe
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQ--LGKSGKYTAVLCIG 142 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~--L~~~~~yDaVIaLG 142 (218)
.|+.||..+.-.. .+.+...+.|++ |+. +....++|--....+-+- .++..++|.||++|
T Consensus 53 ~r~liVtd~~~~~---~~~~~v~~~L~~-g~~---~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG 114 (387)
T 3uhj_A 53 KRALVLIDRVLFD---ALSERIGKSCGD-SLD---IRFERFGGECCTSEIERVRKVAIEHGSDILVGVG 114 (387)
T ss_dssp SEEEEEECTTTHH---HHHHHC-------CCE---EEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEES
T ss_pred CEEEEEECchHHH---HHHHHHHHHHHc-CCC---eEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeC
Confidence 6899998876544 367777888888 874 333456654444433222 23456799999998
No 214
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=51.43 E-value=58 Score=26.83 Aligned_cols=120 Identities=10% Similarity=0.113 Sum_probs=78.8
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhh---cCCccEEEEEeeeeeCCchhH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~---~~~yDaVIaLG~VIrGeT~H~ 152 (218)
.||+||.+.--+. .-.+.|.+.|++.|+. ..+.|-++.-.|--...+++ ..+++.||+.. |...|-
T Consensus 6 p~V~IimgS~SD~---~v~~~a~~~l~~~gi~----~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A----G~aa~L 74 (166)
T 3oow_A 6 VQVGVIMGSKSDW---STMKECCDILDNLGIG----YECEVVSAHRTPDKMFDYAETAKERGLKVIIAGA----GGAAHL 74 (166)
T ss_dssp EEEEEEESSGGGH---HHHHHHHHHHHHTTCE----EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEE----CSSCCH
T ss_pred CeEEEEECcHHhH---HHHHHHHHHHHHcCCC----EEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEEC----Ccchhh
Confidence 4799999888766 5567899999999994 45779999999977777653 35688877654 667775
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCCCC---HHHHHHh----hC-C---CCCCc--HHHHHHHHHHHHHHHhhh
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTCDN---MDQALNR----AG-G---KSGNK--GAEAALTAIEMASLFEHH 216 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n---~eQA~~R----ag-~---k~gnK--G~EAA~aAleM~~L~~~~ 216 (218)
-=|. +=.+.+|||..=....+ ++--+.- +| + -.-++ |..||.-|.+++.+..+.
T Consensus 75 pgvv----------A~~t~~PVIgVP~~~~~l~G~dsLlS~vqmp~gvpVatV~I~~ag~~nAa~lAa~Il~~~d~~ 141 (166)
T 3oow_A 75 PGMV----------AAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDIN 141 (166)
T ss_dssp HHHH----------HHTCSSCEEEEECCCTTTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHH----------HhccCCCEEEeecCcCCCCCHHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHHHcCCCHH
Confidence 4322 22468899854332222 2222211 11 0 12344 889999999998876544
No 215
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=51.04 E-value=30 Score=29.07 Aligned_cols=92 Identities=14% Similarity=0.226 Sum_probs=54.4
Q ss_pred CEEEEEEcccCH-----------HHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchH----------------------
Q 027801 76 LRFALVVARFNE-----------LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI---------------------- 122 (218)
Q Consensus 76 ~RIaIV~Srfn~-----------~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~EL---------------------- 122 (218)
.||+||.|..+. +..+. -...+.|++.|+ +++++..-|...+
T Consensus 4 ~kvlivlt~~~~~~~~~g~~tG~~~~E~--~~p~~~l~~aG~---~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~ 78 (244)
T 3kkl_A 4 KRALISLTSYHGPFYKDGAKTGVFVVEI--LRSFDTFEKHGF---EVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKN 78 (244)
T ss_dssp CEEEEECCCCCCCCSTTSCCCCBCHHHH--HHHHHHHHTTTC---EEEEEESSSCCCBCTTC------------------
T ss_pred CEEEEEECCCCcccCCCCCcCcccHHHH--HHHHHHHHHCCC---EEEEEeCCCCCCcCCccccccccCHHHHHHHHHhh
Confidence 589999986421 11222 267889999998 4888876554311
Q ss_pred -----HHHHHH-hh--hcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEE
Q 027801 123 -----GVVAQQ-LG--KSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 123 -----P~aak~-L~--~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
.+.... +. ....||+|+.-|- -..-+++..+.-...+.+-..+.++||+-
T Consensus 79 ~~~~~~l~~~~~l~~v~~~~yD~l~vpGG----~~~~~~l~~~~~l~~~l~~~~~~gk~iaa 136 (244)
T 3kkl_A 79 SAFNKALARIKTANEVNASDYKVFFASAG----HGALFDYPKAKNLQDIASKIYANGGVIAA 136 (244)
T ss_dssp --CHHHHHTCEEGGGCCGGGCSEEEECCS----TTHHHHGGGCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhcCCCChHHCCHhhCCEEEEcCC----CchhhhcccCHHHHHHHHHHHHcCCEEEE
Confidence 111101 11 1246999998884 33334445555566666666677888864
No 216
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=50.53 E-value=61 Score=26.45 Aligned_cols=116 Identities=21% Similarity=0.298 Sum_probs=73.8
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHH
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVAN 157 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~ 157 (218)
|+||.+.--+. .-.+.|.+.|++.|++ .-+.|-|+.-.|--...+.++...+.||+.. |...|--=|
T Consensus 2 V~Iimgs~SD~---~v~~~a~~~l~~~gi~----~dv~V~saHR~p~~~~~~~~~a~~~ViIa~A----G~aa~Lpgv-- 68 (157)
T 2ywx_A 2 ICIIMGSESDL---KIAEKAVNILKEFGVE----FEVRVASAHRTPELVEEIVKNSKADVFIAIA----GLAAHLPGV-- 68 (157)
T ss_dssp EEEEESSGGGH---HHHHHHHHHHHHTTCC----EEEEECCTTTCHHHHHHHHHHCCCSEEEEEE----ESSCCHHHH--
T ss_pred EEEEEccHHHH---HHHHHHHHHHHHcCCC----eEEEEEcccCCHHHHHHHHHhcCCCEEEEEc----CchhhhHHH--
Confidence 67777766655 4557899999999996 4567999999999888887654447777653 556665322
Q ss_pred HHHHHHHHhchhcCCceEEEEcCCCCH--HHHH-Hhh----C----CCCCCcHHHHHHHHHHHHHHHhh
Q 027801 158 SAASGVLSAGVNSGVPCIFGVLTCDNM--DQAL-NRA----G----GKSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 158 ~vs~gLm~lsL~~~vPVifGVLT~~n~--eQA~-~Ra----g----~k~gnKG~EAA~aAleM~~L~~~ 215 (218)
++-.+.+|||-.=. ..+. .+++ .-. | .-.-|-|..||.-|.+++.+...
T Consensus 69 --------va~~t~~PVIgVP~-~~~l~G~daLlS~vqmP~gvpVatV~I~~~~nAa~lA~~Il~~~d~ 128 (157)
T 2ywx_A 69 --------VASLTTKPVIAVPV-DAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAILALEILALKDE 128 (157)
T ss_dssp --------HHTTCSSCEEEEEE-CSSGGGHHHHHHHHSCCTTSCCEECCTTCHHHHHHHHHHHHTTTCH
T ss_pred --------HHhccCCCEEEecC-CCccCcHHHHHHHhcCCCCCeeEEEecCCcHHHHHHHHHHHhcCCH
Confidence 12236778775444 2221 2221 111 1 11235789999999988876543
No 217
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=50.40 E-value=85 Score=26.48 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=63.3
Q ss_pred CCCCCEEEEEEcc--cCHHHHHHHHHHHHHHHHHCC--CCCCCeEEEEeCC-cc---hHHHHHHHhhhcCCccEEEEEee
Q 027801 72 KNEGLRFALVVAR--FNELVTKLLLEGALETFKKYS--VKEENIDVVWVPG-SF---EIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 72 ~~~~~RIaIV~Sr--fn~~It~~Ll~gA~~~L~~~G--v~~e~I~vv~VPG-A~---ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
+++.+|||++... -+..+-..+..++.-.+++.+ +.-..|+++..-. .. +---++++|+..++.++|| |+
T Consensus 2 ~Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~nggi~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aii--G~ 79 (371)
T 4f06_A 2 NADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGNKVAGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLA--GL 79 (371)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHCSEETTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEE--EC
T ss_pred CCCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhCCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEE--ec
Confidence 3567899999864 345667778888777777654 4445677776642 23 2345568888888899876 44
Q ss_pred eeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 144 VVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 144 VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
+ +..++..+.++.-+.++|++..-
T Consensus 80 ~-----------~S~~~~a~~~~~~~~~vp~i~~~ 103 (371)
T 4f06_A 80 Y-----------FTPNAMAVAPLLQEAKVPMVVMN 103 (371)
T ss_dssp C-----------SHHHHHHHGGGHHHHTCCEEESS
T ss_pred c-----------cccchHHHHHHHHhhcCCccccc
Confidence 3 34567777888888899988653
No 218
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=50.32 E-value=34 Score=26.32 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=30.0
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHH-CCCCCCCeEEEEeCCc
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKK-YSVKEENIDVVWVPGS 119 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~-~Gv~~e~I~vv~VPGA 119 (218)
+||+||...- .--++.|.+...+.|++ .|+ +++++.+...
T Consensus 2 mkilii~~S~-~g~t~~la~~i~~~l~~~~g~---~v~~~~l~~~ 42 (198)
T 3b6i_A 2 AKVLVLYYSM-YGHIETMARAVAEGASKVDGA---EVVVKRVPET 42 (198)
T ss_dssp CEEEEEECCS-SSHHHHHHHHHHHHHHTSTTC---EEEEEECCCC
T ss_pred CeEEEEEeCC-CcHHHHHHHHHHHHHhhcCCC---EEEEEEcccc
Confidence 3788887764 34578888888888888 776 4788888765
No 219
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=50.04 E-value=32 Score=31.03 Aligned_cols=65 Identities=9% Similarity=-0.105 Sum_probs=45.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC---CcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP---GSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP---GA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
-.+|+||.+ +.+.....++...+++++.|+.- ..+..+| +..+.--.+.+.++..+.|.||..|.
T Consensus 185 w~~V~ii~~--dd~~G~~~~~~~~~~~~~~Gi~v--~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~~~~ 252 (479)
T 3sm9_A 185 WTYVSTVAS--EGDYGETGIEAFEQEARLRNISI--ATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMR 252 (479)
T ss_dssp CCEEEEEEE--SSHHHHHHHHHHHHHHHTTTCEE--EEEEEECC--CHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred CeEEEEEEe--cchhhHHHHHHHHHHHHHCCceE--EEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 468999998 56677888899999999999741 2223455 44555555544456677899998874
No 220
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=49.80 E-value=21 Score=28.12 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=42.3
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHH
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAAS 161 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~ 161 (218)
.+.|+++|+. ......||.-.| |=-+++.+++..++|.||+-|-+ |-| ++|++.+++.+
T Consensus 27 ~~~l~~~G~~--v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~--g~g-~~D~t~ea~~~ 86 (164)
T 2is8_A 27 REVLAGGPFE--VAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGT--GLA-PRDRTPEATRE 86 (164)
T ss_dssp HHHHTTSSEE--EEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC--SSS-TTCCHHHHHHT
T ss_pred HHHHHHCCCe--EeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCC--CCC-CCCChHHHHHH
Confidence 3456677874 456677998876 55566666654579999999998 444 77888777766
No 221
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=49.44 E-value=45 Score=28.74 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=48.6
Q ss_pred EEEEEEcccCH-HHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHH
Q 027801 77 RFALVVARFNE-LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAV 155 (218)
Q Consensus 77 RIaIV~Srfn~-~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~V 155 (218)
|++||+-..-. .-..++++...+.|++.|++ ++++.--..-+..-.++.+. ..++|.||++| |+=.
T Consensus 26 ~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~---~~~~~t~~~~~a~~~~~~~~-~~~~d~vvv~G----GDGT----- 92 (337)
T 2qv7_A 26 RARIIYNPTSGKEQFKRELPDALIKLEKAGYE---TSAYATEKIGDATLEAERAM-HENYDVLIAAG----GDGT----- 92 (337)
T ss_dssp EEEEEECTTSTTSCHHHHHHHHHHHHHHTTEE---EEEEECCSTTHHHHHHHHHT-TTTCSEEEEEE----CHHH-----
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHHHHcCCe---EEEEEecCcchHHHHHHHHh-hcCCCEEEEEc----CchH-----
Confidence 58888654432 12335667788899998873 45444333224433344443 35799999998 4432
Q ss_pred HHHHHHHHHHhchhcCCceE
Q 027801 156 ANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 156 a~~vs~gLm~lsL~~~vPVi 175 (218)
-++++++|++ .+.++|++
T Consensus 93 v~~v~~~l~~--~~~~~pl~ 110 (337)
T 2qv7_A 93 LNEVVNGIAE--KPNRPKLG 110 (337)
T ss_dssp HHHHHHHHTT--CSSCCEEE
T ss_pred HHHHHHHHHh--CCCCCcEE
Confidence 2345666654 24566754
No 222
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=48.69 E-value=25 Score=29.20 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=35.8
Q ss_pred CCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 72 ~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
|-++.||++........ ++ ...|+++|++.++++.+.++ .+-+...| ..++.|+++.
T Consensus 128 DLkGk~i~v~~gs~~~~----~~---~~~l~~~Gl~~~~v~~v~~~----~~~~~~al-~~G~vDa~~~ 184 (324)
T 3ksx_A 128 DLKGKRIAFQKGSSAHN----LL---LRVLAKSGLSMRDITPLYLS----PANARAAF-AAGQVDAWAI 184 (324)
T ss_dssp GGTTCEEEECTTSHHHH----HH---HHHHHHTTCCGGGSEEEECC----HHHHHHHH-HTTCCSEEEE
T ss_pred HhCCCEEEecCCChHHH----HH---HHHHHHcCCCHHHeEEEeCC----HHHHHHHH-HcCCCCEEEE
Confidence 45788998753322222 22 23567889988888887764 23344444 6789999665
No 223
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=48.66 E-value=23 Score=28.83 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=48.2
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
.+..|..|...+. =....|...|++.+.+-+++.+..-|.=+++.+.++++.|.+||+
T Consensus 74 ~~r~vlwI~Pp~~---------l~~~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALrsG~~~aVl~ 131 (161)
T 1oft_A 74 DARWLTLIAPPAS---------LTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVS 131 (161)
T ss_dssp SSSEEEEESCCTT---------SCHHHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cCccEEEECCCCC---------CCHHHHHHcCCCHHHEEEEECCChHHHHHHHHHHHhcCCccEEEE
Confidence 3456777776652 134578889999999999999999999999999999999999987
No 224
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=48.37 E-value=32 Score=29.06 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=55.5
Q ss_pred CEEEEEEcccCH-----------HHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-----------------------
Q 027801 76 LRFALVVARFNE-----------LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE----------------------- 121 (218)
Q Consensus 76 ~RIaIV~Srfn~-----------~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E----------------------- 121 (218)
.||+||.+..+. +..+.+ ...+.|++.|++ ++++..-|...
T Consensus 10 kkvlvvlt~~~~~~~~~g~~tG~~~~E~~--~p~~~l~~aG~~---V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~ 84 (247)
T 3n7t_A 10 RKALLAITSAHPPFWPDGKRTGLFFSEAL--HPFNELTAAGFE---VDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEH 84 (247)
T ss_dssp SEEEEECCCCCCBCSTTSCBCCBCHHHHH--HHHHHHHHTTCE---EEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSS
T ss_pred CeEEEEECCCCcccCCCCCCCcccHHHHH--HHHHHHHHCCCE---EEEEeCCCCcccCcccccccccCHHHHHHHHhhh
Confidence 589999997432 133333 678999999984 88887655431
Q ss_pred ----HHHHH--HHhh--hcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEE
Q 027801 122 ----IGVVA--QQLG--KSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 122 ----LP~aa--k~L~--~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
.++.. ..+. ....||+|+.-|-. -..+++-.+.-...+.+-..+.++||.-
T Consensus 85 ~~~~~~l~~~~~~l~~v~~~~yD~l~ipGG~----g~~~~l~~~~~l~~~l~~~~~~gk~iaa 143 (247)
T 3n7t_A 85 NHFMEKMNKQVFKAGDLAPHDYGLMFVCGGH----GALYDFPHAKHLQNIAQDIYKRGGVIGA 143 (247)
T ss_dssp CHHHHHHHHCCEEGGGSCGGGCSEEEECCST----THHHHGGGCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhccCCCHHHCChhhCCEEEEeCCC----chhhhcccCHHHHHHHHHHHHcCCEEEE
Confidence 11111 1121 13579999988842 2224444455555666666677888764
No 225
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=48.26 E-value=32 Score=30.06 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=31.7
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..+||+||.-...+ .+...+.|+++|+. ++..+-..+. -+.+|.||+||=
T Consensus 28 ~~mki~iv~~~~~~------~~~l~~~L~~~g~~-----v~~~~~~~~~---------~~~~DlvIvlGG 77 (278)
T 1z0s_A 28 GGMRAAVVYKTDGH------VKRIEEALKRLEVE-----VELFNQPSEE---------LENFDFIVSVGG 77 (278)
T ss_dssp --CEEEEEESSSTT------HHHHHHHHHHTTCE-----EEEESSCCGG---------GGGSSEEEEEEC
T ss_pred cceEEEEEeCCcHH------HHHHHHHHHHCCCE-----EEEccccccc---------cCCCCEEEEECC
Confidence 45799988765555 55667888988863 4433322221 137899999984
No 226
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=47.95 E-value=95 Score=26.07 Aligned_cols=92 Identities=13% Similarity=0.024 Sum_probs=53.6
Q ss_pred CCCCEEEEEEcccCH-HHHHHHHHHHHHHHHH---CC-CCC-CCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVARFNE-LVTKLLLEGALETFKK---YS-VKE-ENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~-~It~~Ll~gA~~~L~~---~G-v~~-e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~ 143 (218)
++..|||++...-.. .+...+..++...+++ .| +.. ..++++..-...+-. -.+++|+...+.|+||. .
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG--~ 80 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAG--T 80 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEE--C
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEC--C
Confidence 467899999874221 3445566666555554 33 333 357777665544433 34566666668898764 3
Q ss_pred eeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 144 VVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 144 VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
. +...+..+.++.-+.++|++..
T Consensus 81 ~-----------~s~~~~a~~~~~~~~~ip~i~~ 103 (387)
T 3i45_A 81 F-----------LSHVGLAVSDFARQRKVLFMAS 103 (387)
T ss_dssp C-----------SHHHHHHHHHHHHHHTCCEEEC
T ss_pred c-----------chHHHHHHHHHHHHcCceEEec
Confidence 2 1223444556666778998874
No 227
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=47.68 E-value=75 Score=27.55 Aligned_cols=96 Identities=14% Similarity=-0.052 Sum_probs=57.9
Q ss_pred CCCEEEEEEcccCHH--HHHHHHHHHHHHHHHCCCCCCCeEEEEeCC----cch-HHHHHHHhh-hcCCccEEEEEeeee
Q 027801 74 EGLRFALVVARFNEL--VTKLLLEGALETFKKYSVKEENIDVVWVPG----SFE-IGVVAQQLG-KSGKYTAVLCIGAVV 145 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~--It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG----A~E-LP~aak~L~-~~~~yDaVIaLG~VI 145 (218)
...||++|....... ....-.+|..+.|+++|++. .++..+- .++ .--+++.++ +..++|||+|..
T Consensus 138 G~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~~~n--- 211 (412)
T 4fe7_A 138 GVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRG---VVYQGLETAPENWQHAQNRLADWLQTLPPQTGIIAVT--- 211 (412)
T ss_dssp TCCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCC---EEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEEEESS---
T ss_pred CCceEEEecccccccccHHHHHHHHHHHHHHHcCCCc---cccccccccccchhhHHHHHHHHHHhCCCCeEEEEEe---
Confidence 446899998765432 35566789999999999852 3332211 222 222333444 446899999863
Q ss_pred eCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCH
Q 027801 146 RGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNM 184 (218)
Q Consensus 146 rGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~ 184 (218)
|.++-.+.+++.+..++ +|==..|++.++.
T Consensus 212 -------D~~A~g~~~al~~~G~~--vP~disvig~D~~ 241 (412)
T 4fe7_A 212 -------DARARHILQVCEHLHIP--VPEKLCVIGIDNE 241 (412)
T ss_dssp -------HHHHHHHHHHHHHHTCC--TTTTSEEEESSCC
T ss_pred -------cHHHHHHHHHHHHcCCC--CCceEEEEeecch
Confidence 56777788888877764 3322234444443
No 228
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=47.44 E-value=25 Score=29.04 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=23.9
Q ss_pred CCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceE
Q 027801 133 GKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 133 ~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
..||+||.-|- ....+++..+.-...+.+-..+.++||.
T Consensus 97 ~~~D~livpGG----~~~~~~l~~~~~l~~~l~~~~~~gk~va 135 (243)
T 1rw7_A 97 DDYQIFFASAG----HGTLFDYPKAKDLQDIASEIYANGGVVA 135 (243)
T ss_dssp GGEEEEEECCS----TTHHHHGGGCHHHHHHHHHHHHTTCEEE
T ss_pred hhCcEEEECCC----CCchhhcccCHHHHHHHHHHHHcCCEEE
Confidence 46999988873 3334555545545555555556677775
No 229
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=47.26 E-value=44 Score=26.75 Aligned_cols=84 Identities=17% Similarity=0.289 Sum_probs=38.7
Q ss_pred ccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeC
Q 027801 68 GFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRG 147 (218)
Q Consensus 68 ~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrG 147 (218)
|.+.....+||+|+.-.+|-. .-.+.|++.|+ ++..++-. + .+ ..||+||.-|-
T Consensus 13 ~~~~~~~~~~I~ii~~~~~~~-------~~~~~l~~~g~-----~~~~~~~~-~------~l---~~~d~iil~GG---- 66 (208)
T 2iss_D 13 GLVPRGSHMKIGVLGVQGDVR-------EHVEALHKLGV-----ETLIVKLP-E------QL---DMVDGLILPGG---- 66 (208)
T ss_dssp -------CCEEEEECSSSCHH-------HHHHHHHHTTC-----EEEEECSG-G------GG---GGCSEEEECSS----
T ss_pred CccCCCCCcEEEEEECCCchH-------HHHHHHHHCCC-----EEEEeCCh-H------HH---hhCCEEEECCC----
Confidence 444445678999996433321 13445566675 34444421 1 12 36999988773
Q ss_pred CchhHH-HHHHHHHHHHHHhchhcCCceEEEE
Q 027801 148 DTTHYD-AVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 148 eT~H~e-~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
...-++ +..+.-...+.+-.++.++||. ||
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~~~g~Pil-GI 97 (208)
T 2iss_D 67 ESTTMIRILKEMDMDEKLVERINNGLPVF-AT 97 (208)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHTTCCEE-EE
T ss_pred cHHHHHhhhhhhhHHHHHHHHHHCCCeEE-EE
Confidence 222222 1111111233344456789975 54
No 230
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=46.82 E-value=1.2e+02 Score=24.75 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchh
Q 027801 90 TKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 90 t~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~ 169 (218)
.+..++.+.+.|+++|++ ++.....| +..-++...++..++| .|++|.- |.+.--+++-..+++.+.+ +
T Consensus 212 ~~~~l~~~~~~l~~~~~~---~~~~~~~g--~~~~~I~~~a~~~~~d-LlV~G~~--~~~~~~~~~~Gs~~~~vl~---~ 280 (294)
T 3loq_A 212 KTADLRVMEEVIGAEGIE---VHVHIESG--TPHKAILAKREEINAT-TIFMGSR--GAGSVMTMILGSTSESVIR---R 280 (294)
T ss_dssp CHHHHHHHHHHHHHTTCC---EEEEEECS--CHHHHHHHHHHHTTCS-EEEEECC--CCSCHHHHHHHCHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHcCCc---EEEEEecC--CHHHHHHHHHHhcCcC-EEEEeCC--CCCCccceeeCcHHHHHHh---c
Confidence 456778888899999885 55555667 5555666666777888 5677774 6666667777788887765 4
Q ss_pred cCCceEE
Q 027801 170 SGVPCIF 176 (218)
Q Consensus 170 ~~vPVif 176 (218)
..+||..
T Consensus 281 ~~~pvLv 287 (294)
T 3loq_A 281 SPVPVFV 287 (294)
T ss_dssp CSSCEEE
T ss_pred CCCCEEE
Confidence 5678753
No 231
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=46.70 E-value=77 Score=26.50 Aligned_cols=121 Identities=11% Similarity=0.138 Sum_probs=79.0
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhh---cCCccEEEEEeeeeeCCch
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~---~~~yDaVIaLG~VIrGeT~ 150 (218)
.-..|+||.+.--+. .-.+.|.+.|++.|++ ..+.|-|+.-+|--...+++ ..+++.||+.. |...
T Consensus 12 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~Gi~----~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~A----G~aa 80 (183)
T 1o4v_A 12 HVPRVGIIMGSDSDL---PVMKQAAEILEEFGID----YEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGA----GGAA 80 (183)
T ss_dssp --CEEEEEESCGGGH---HHHHHHHHHHHHTTCE----EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEE----ESSC
T ss_pred CCCeEEEEeccHHHH---HHHHHHHHHHHHcCCC----eEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEec----Cccc
Confidence 345899999888876 5567899999999996 45679999999988888764 35688776643 5566
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCC--HHHH-HH--hh--C----CCCCCcHHHHHHHHHHHHHHHhh
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDN--MDQA-LN--RA--G----GKSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n--~eQA-~~--Ra--g----~k~gnKG~EAA~aAleM~~L~~~ 215 (218)
|--=|. +-.+.+|||-.=....+ -.++ +. .. | .-.-+-|..||..|.+++.+...
T Consensus 81 ~Lpgvv----------A~~t~~PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~Id~~~nAa~lAaqIla~~d~ 146 (183)
T 1o4v_A 81 HLPGMV----------ASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAASILGIKYP 146 (183)
T ss_dssp CHHHHH----------HHHCSSCEEEEEECCTTTTTHHHHHHHHTCCTTCCCEECCTTCHHHHHHHHHHHHHTTCH
T ss_pred ccHHHH----------HhccCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCchHHHHHHHHHHhcCCH
Confidence 654322 12367888855443322 1222 21 11 1 01236799999999999876543
No 232
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=46.52 E-value=70 Score=28.59 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=35.9
Q ss_pred CEEEEEEc-ccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc-----chHHHHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVA-RFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS-----FEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~S-rfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA-----~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.|+.||.. ..-+. ..+++...+.|++.|+. +...+|. +|.-..+-..++..++|.||++|=
T Consensus 44 ~r~liVtd~~~~~~--~g~~~~v~~~L~~~g~~-----~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG 110 (407)
T 1vlj_A 44 RKVLFLYGGGSIKK--NGVYDQVVDSLKKHGIE-----WVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGG 110 (407)
T ss_dssp CEEEEEECSSHHHH--SSHHHHHHHHHHHTTCE-----EEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred CeEEEEECchHHhh--ccHHHHHHHHHHHcCCe-----EEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 58888886 32221 02566667788887763 3344552 232222233346678999999983
No 233
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=46.33 E-value=44 Score=30.44 Aligned_cols=65 Identities=9% Similarity=-0.146 Sum_probs=44.4
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC---CcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP---GSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP---GA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
-.+|+||.+.- +.....++...+++++.|+. ......+| +.-++.-.++++.+..+.|.||..|-
T Consensus 186 w~~V~ii~~d~--~~g~~~~~~~~~~~~~~gi~--v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~~ 253 (555)
T 2e4u_A 186 WTYVSTVASEG--DYGETGIEAFEQEARLRNIC--IATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMR 253 (555)
T ss_dssp CCEEEEEEESS--TTHHHHHHHHHHHHHTTTCE--EEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred CeEEEEEEeeC--hHHHHHHHHHHHHHHHCCcc--EEEEEEeCCCCChHHHHHHHHHHhccCCCCEEEEEcC
Confidence 36899999853 45566777888899999974 12234455 55566556777755567899888764
No 234
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=45.50 E-value=48 Score=27.58 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=38.6
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHH----HHHHhhhcCCccEEEEE
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGV----VAQQLGKSGKYTAVLCI 141 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~----aak~L~~~~~yDaVIaL 141 (218)
..|||+|.+.-... -++|..+.++++|.+ ++.+ ...|.|.-|- +++.|++. ++|+|+|.
T Consensus 126 ~~~Ig~i~g~~~~~----r~~Gf~~~~~~~~~~--~~~~-~~~~~~~~~~~g~~~a~~ll~~-~~daI~~~ 188 (296)
T 2hqb_A 126 THKVGVIAAFPWQP----EVEGFVDGAKYMNES--EAFV-RYVGEWTDADKALELFQELQKE-QVDVFYPA 188 (296)
T ss_dssp SSEEEEEESCTTCH----HHHHHHHHHHHTTCC--EEEE-EECSSSSCHHHHHHHHHHHHTT-TCCEEECC
T ss_pred CCeEEEEcCcCchh----hHHHHHHHHHHhCCC--eEEE-EeeccccCHHHHHHHHHHHHHC-CCcEEEEC
Confidence 46999998753332 468999999999874 2333 2467774332 34556553 58998864
No 235
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=45.45 E-value=45 Score=28.46 Aligned_cols=87 Identities=11% Similarity=0.121 Sum_probs=53.1
Q ss_pred CEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHH
Q 027801 76 LRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDA 154 (218)
Q Consensus 76 ~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~ 154 (218)
.|+.||+-..- ..-..+.++...+.|++.|++ ++++..-..-+.--.++.+. .+||.||++| |+-.-
T Consensus 9 ~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~---~~~~~t~~~~~a~~~~~~~~--~~~d~vv~~G----GDGTl--- 76 (304)
T 3s40_A 9 EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPD---LHILHTKEQGDATKYCQEFA--SKVDLIIVFG----GDGTV--- 76 (304)
T ss_dssp SSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSE---EEEEECCSTTHHHHHHHHHT--TTCSEEEEEE----CHHHH---
T ss_pred CEEEEEECcccCCCchHHHHHHHHHHHHHcCCe---EEEEEccCcchHHHHHHHhh--cCCCEEEEEc----cchHH---
Confidence 46777764432 111234556778888888874 67776666666666667664 3899999998 44332
Q ss_pred HHHHHHHHHHHhchhcCCceEEEEcC
Q 027801 155 VANSAASGVLSAGVNSGVPCIFGVLT 180 (218)
Q Consensus 155 Va~~vs~gLm~lsL~~~vPVifGVLT 180 (218)
+++.++|+.. +.++|+ |+|-
T Consensus 77 --~~v~~~l~~~--~~~~~l--~iiP 96 (304)
T 3s40_A 77 --FECTNGLAPL--EIRPTL--AIIP 96 (304)
T ss_dssp --HHHHHHHTTC--SSCCEE--EEEE
T ss_pred --HHHHHHHhhC--CCCCcE--EEec
Confidence 2456666553 345554 4443
No 236
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=45.12 E-value=18 Score=28.10 Aligned_cols=39 Identities=5% Similarity=-0.051 Sum_probs=30.7
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS 119 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA 119 (218)
+||+||... +. -++.|.+...+.|++.|+ +++++.++..
T Consensus 5 mkilii~~S-~g-~T~~la~~i~~~l~~~g~---~v~~~~l~~~ 43 (199)
T 2zki_A 5 PNILVLFYG-YG-SIVELAKEIGKGAEEAGA---EVKIRRVRET 43 (199)
T ss_dssp CEEEEEECC-SS-HHHHHHHHHHHHHHHHSC---EEEEEECCCC
T ss_pred cEEEEEEeC-cc-HHHHHHHHHHHHHHhCCC---EEEEEehhHh
Confidence 589999988 44 588999999999988786 4777777654
No 237
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=44.95 E-value=1.1e+02 Score=28.15 Aligned_cols=87 Identities=8% Similarity=0.020 Sum_probs=56.9
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCce
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPC 174 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPV 174 (218)
+-..+.|++.|+++.-+.++ +|. +-+.+.|.++.++|.|.-- |.|.--..|...+++-+..+.|+.|=--
T Consensus 205 ~l~~~al~~aGlP~gvv~vv--~g~---~~~g~~L~~~~~vd~I~FT-----GS~~~g~~i~~~aa~~l~~v~lELGGk~ 274 (500)
T 2j6l_A 205 KIIAKVLEDNKLPGAICSLT--CGG---ADIGTAMAKDERVNLLSFT-----GSTQVGKQVGLMVQERFGRSLLELGGNN 274 (500)
T ss_dssp HHHHHHHHHTTCCGGGEEEE--CCS---HHHHHHHHHCTTCSEEEEE-----SCHHHHHHHHHHHHHTTCEEEEECCCCE
T ss_pred HHHHHHHHhhcCCcCeEEEE--eCC---HHHHHHHhcCCCcCEEEEE-----CCHHHHHHHHHHhccCCCceEEEcCCCC
Confidence 33445577889886655554 773 2345777778889998654 5677777888877777777777765333
Q ss_pred EEEEcCCCCHHHHHHhh
Q 027801 175 IFGVLTCDNMDQALNRA 191 (218)
Q Consensus 175 ifGVLT~~n~eQA~~Ra 191 (218)
-.-|+-.-|.++|.+++
T Consensus 275 p~iV~~dADl~~Aa~~i 291 (500)
T 2j6l_A 275 AIIAFEDADLSLVVPSA 291 (500)
T ss_dssp EEEECTTCCHHHHHHHH
T ss_pred ceEECCCCCHHHHHHHH
Confidence 23344445888887664
No 238
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=44.63 E-value=66 Score=29.55 Aligned_cols=59 Identities=7% Similarity=0.154 Sum_probs=36.9
Q ss_pred EEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHh---hhcCCccEEEEEee
Q 027801 77 RFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL---GKSGKYTAVLCIGA 143 (218)
Q Consensus 77 RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L---~~~~~yDaVIaLG~ 143 (218)
|+.||.... +.+.+++...+.|++.|+. +.+...+|--..+. +.++ ++. ++|.||++|=
T Consensus 93 rvlIVtd~~---~~~~~~~~v~~~L~~~gi~---~~~~~~~ge~~~~~-v~~~~~~~~~-~~D~IIAvGG 154 (450)
T 1ta9_A 93 SAVVLADQN---VWNICANKIVDSLSQNGMT---VTKLVFGGEASLVE-LDKLRKQCPD-DTQVIIGVGG 154 (450)
T ss_dssp EEEEEEEHH---HHHHTHHHHHHHHHHTTCE---EEEEEECSCCCHHH-HHHHHTTSCT-TCCEEEEEES
T ss_pred EEEEEECcc---HHHHHHHHHHHHHHHCCCe---EEEEeeCCCCCHHH-HHHHHHHHhh-CCCEEEEeCC
Confidence 898987653 3335677888889888874 33344556222222 3333 345 8999999983
No 239
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=44.56 E-value=43 Score=28.88 Aligned_cols=88 Identities=18% Similarity=0.286 Sum_probs=68.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeC--CcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVP--GSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VP--GA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
+.||-|+-. -..+.+..-||+.+..+|++--|.|.+-+.| |--||--|+.-..+-.+.-..|--|.+.-|
T Consensus 87 gkrvii~gg---gaqv~qva~gai~eadrhnirgerisvdt~p~vge~~l~~av~av~~lpr~~~lvlags~mgg----- 158 (223)
T 1y7p_A 87 GKRVIILGG---GALVSQVAIGAISEADRHNLRGERISVDTMPVVGEEEIAEAVKAVSRLHRAEVLVLAGGIMGG----- 158 (223)
T ss_dssp CEEEEEEEC---HHHHHHHHHHHHHHHHHHHHTSCCEEEEEEECCSHHHHHHHHHHGGGSTTEEEEEEESSBCCT-----
T ss_pred CcEEEEECC---cHHHHHHHHhhcchhhhcccccceeeeecceecCHHHHHHHHHHHhhccccceeeEecccccc-----
Confidence 456655543 3456677789999999999877776665555 878888888888877899999999998654
Q ss_pred HHHHHHHHHHHHHhchhcCCceEE
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
.++..+.++.-+ ++||+.
T Consensus 159 -----~i~~~v~~~~~~-~i~vi~ 176 (223)
T 1y7p_A 159 -----KITEEVKKLRKS-GIRVIS 176 (223)
T ss_dssp -----HHHHHHHHHGGG-TCEEEE
T ss_pred -----hHHHHHHHHHHC-CCeEEE
Confidence 577888899988 999985
No 240
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=44.55 E-value=22 Score=31.51 Aligned_cols=67 Identities=6% Similarity=0.035 Sum_probs=34.6
Q ss_pred CCCCEEEEEEcc-cC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEe---CCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVAR-FN-ELVTKLLLEGALETFKKYSVKEENIDVVWV---PGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Sr-fn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V---PGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..|||+|..- .+ ......+.+|..+..+++|. .+++..+ |-.-+.--.++.|++ .+||.||+.|.
T Consensus 24 ~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~---~~~~~~~e~~~~~~d~~~~l~~l~~-~g~d~Ii~~g~ 95 (356)
T 3s99_A 24 EEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGD---KVETTFLENVAEGADAERSIKRIAR-AGNKLIFTTSF 95 (356)
T ss_dssp --CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTT---TEEEEEECSCCTTHHHHHHHHHHHH-TTCSEEEECSG
T ss_pred CCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCC---ceEEEEEecCCCHHHHHHHHHHHHH-CCCCEEEECCH
Confidence 345678877752 33 24555666777777777662 1333332 221122234455554 45787777653
No 241
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=44.22 E-value=30 Score=27.68 Aligned_cols=93 Identities=11% Similarity=0.094 Sum_probs=57.0
Q ss_pred CCCEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC-cc---h-HHHHHHHhhhcCCccEEEEEeeeeeC
Q 027801 74 EGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPG-SF---E-IGVVAQQLGKSGKYTAVLCIGAVVRG 147 (218)
Q Consensus 74 ~~~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG-A~---E-LP~aak~L~~~~~yDaVIaLG~VIrG 147 (218)
...||+++...-+ ......-++|..+.|++++. +.+++ .| + .-.+.+.|....++|||+|.
T Consensus 122 G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~------ 188 (276)
T 3jy6_A 122 GYQHVVVLTSELELSRTRQERYRGILAAAQDVDV-------LEVSESSYNHSEVHQRLTQLITQNDQKTVAFAL------ 188 (276)
T ss_dssp TCCEEEEEEECSTTCHHHHHHHHHHHTTCSEEEE-------EEECSSSCCHHHHHHHHHHHHHSSSSCEEEEES------
T ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHHhCCc-------EEEeccccCCcHHHHHHHHHHhcCCCCcEEEEe------
Confidence 4569999998876 45556667888888887731 23342 22 2 12223334344789999973
Q ss_pred CchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHH
Q 027801 148 DTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMD 185 (218)
Q Consensus 148 eT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~e 185 (218)
.|.++-.+.+++.+..++ +|==..|++.++.+
T Consensus 189 ----~d~~a~g~~~al~~~g~~--vP~di~vig~d~~~ 220 (276)
T 3jy6_A 189 ----KERWLLEFFPNLIISGLI--DNQTVTATGFADTD 220 (276)
T ss_dssp ----SHHHHHHHSHHHHHSSSC--CSSSEEEEEBCCCS
T ss_pred ----CcHHHHHHHHHHHHcCCC--CCCcEEEEEECChH
Confidence 356788888888877764 44223445555543
No 242
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=44.15 E-value=28 Score=28.42 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=35.9
Q ss_pred CCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEE
Q 027801 71 TKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVL 139 (218)
Q Consensus 71 ~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVI 139 (218)
.|.++.||++....... .+ ....|+++|+++++++.+.++ +++ ...| .+++.|+++
T Consensus 102 ~DL~Gk~i~~~~~~~~~----~~---~~~~l~~~Gl~~~~v~~~~~~--~~~---~~al-~~G~vDa~~ 157 (302)
T 3ix1_A 102 ADLVGLTVGYPGIPVNE----PI---LKTMVEAAGGDYEQVHLMDVG--FEL---GASI-VSGRADAVV 157 (302)
T ss_dssp GGGTTSEEEECSCTTHH----HH---HHHHHHHTTCCGGGCEEEECT--TCH---HHHH-HHSSSSEEE
T ss_pred HHcCCCEEEeCCCcchH----HH---HHHHHHHcCCCHHHeEEEecC--ccH---HHHH-hCCCCCEEE
Confidence 35678899886554322 22 334567789988888888775 332 2333 468999876
No 243
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=44.12 E-value=63 Score=30.35 Aligned_cols=85 Identities=22% Similarity=0.116 Sum_probs=47.3
Q ss_pred HHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhc--CCce-EEEEcCCC-----CH---HHHHHhh
Q 027801 123 GVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNS--GVPC-IFGVLTCD-----NM---DQALNRA 191 (218)
Q Consensus 123 P~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~--~vPV-ifGVLT~~-----n~---eQA~~Ra 191 (218)
--+++.+++...+|+|++.- +-|.+.|.+- +.++++.|.++.-++ ++|+ +..-+... .. .+.++.+
T Consensus 317 ~~al~~~l~D~~vd~vlv~~--v~~~~~~~d~-~~~~a~ai~~~~~~~~~~kp~v~v~~~~g~~~~~~~~~~~~~~L~~a 393 (480)
T 3dmy_A 317 NQLIADLGAKPQVRVLLLDV--VIGFGATADP-AASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDA 393 (480)
T ss_dssp HHHHHHGGGCTTEEEEEEEE--ECSTTSCSCH-HHHHHHHHHHHHHTSCTTSCCEEEEEEESCTTSTTCHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCEEEEEe--ecCCCCCCCh-HHHHHHHHHHHHHhccCCCCeEEEEEecCcccchhhHHHHHHHHHhC
Confidence 34566677888999888752 2244444331 345566666666556 7995 33333321 11 1345566
Q ss_pred CCCCCCcHHHHHHHHHHHH
Q 027801 192 GGKSGNKGAEAALTAIEMA 210 (218)
Q Consensus 192 g~k~gnKG~EAA~aAleM~ 210 (218)
|.-.-.-=.+|++++..|+
T Consensus 394 GIp~f~spe~Av~a~~~l~ 412 (480)
T 3dmy_A 394 GIAVVSSLPEATLLAAALI 412 (480)
T ss_dssp TCEECSSHHHHHHHHHHHT
T ss_pred CCcccCCHHHHHHHHHHHH
Confidence 6433334466777666664
No 244
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=43.95 E-value=80 Score=25.31 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=42.8
Q ss_pred CCEEEEEEcccC-----HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 75 GLRFALVVARFN-----ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 75 ~~RIaIV~Srfn-----~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
.-||+||.+.=+ .-.+..|++.+.+.+++.|. +++++.+....++--..+++. ..|+||-
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~---~v~~~dL~~~~d~~~~~~~l~---~AD~iV~ 76 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGH---DVRIVRADSDYDVKAEVQNFL---WADVVIW 76 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTC---EEEEEESSSCCCHHHHHHHHH---HCSEEEE
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCC---EEEEEeCCccccHHHHHHHHH---hCCEEEE
Confidence 458888876433 26889999999999998875 477777766566665556664 5787764
No 245
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=43.84 E-value=26 Score=29.66 Aligned_cols=56 Identities=23% Similarity=0.191 Sum_probs=34.4
Q ss_pred CCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEE
Q 027801 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVL 139 (218)
Q Consensus 72 ~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVI 139 (218)
|-++.||++..+.-... + ....|+++|++.++++++.++. +-+...| ..++.|+++
T Consensus 116 DLkGk~I~v~~gs~~~~----~---~~~~l~~~Gl~~~~v~~v~~~~----~~~~~al-~~G~vDa~~ 171 (348)
T 3uif_A 116 DLKGKKIALHRGRPWEL----A---FSNLLQSEGLTFKDFKIVNVNP----QVGAAAL-ASGTVDGFF 171 (348)
T ss_dssp GGTTSEEEECTTSTHHH----H---HHHHHHHTTCCGGGSEEECCCH----HHHHHHH-HHTSSSEEE
T ss_pred HcCCCEEEecCCChHHH----H---HHHHHHHcCCCHHHeEEEECCH----HHHHHHH-HcCCCCEEE
Confidence 55788999853222222 2 2345678899887888775542 3333333 578999964
No 246
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=43.40 E-value=68 Score=28.06 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=31.1
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch---HHH---HHHHhhhcCCc---cEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE---IGV---VAQQLGKSGKY---TAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E---LP~---aak~L~~~~~y---DaVIaLG~ 143 (218)
.|+.||..+ .+.+..++...+.| +.| . ++++.+|+--. +.. +++. +...++ |.||++|=
T Consensus 32 ~~~liVtd~---~~~~~~~~~v~~~L-~~g-~---~~~~~~~~~e~~p~~~~v~~~~~~-~~~~~~~r~d~iIavGG 99 (354)
T 1xah_A 32 DQSFLLIDE---YVNQYFANKFDDIL-SYE-N---VHKVIIPAGEKTKTFEQYQETLEY-ILSHHVTRNTAIIAVGG 99 (354)
T ss_dssp SCEEEEEEH---HHHHHHHHHHC--------C---EEEEEECSGGGGCSHHHHHHHHHH-HHTTCCCTTCEEEEEES
T ss_pred CeEEEEECC---cHHHHHHHHHHHHH-hcC-C---eEEEEECCCCCCCCHHHHHHHHHH-HHHcCCCCCceEEEECC
Confidence 478888764 33344566666667 655 2 56666776533 222 2233 344556 99999983
No 247
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=43.39 E-value=32 Score=30.57 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=65.6
Q ss_pred CCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHH----HHHHh----h--hcCCccEEEE
Q 027801 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGV----VAQQL----G--KSGKYTAVLC 140 (218)
Q Consensus 72 ~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~----aak~L----~--~~~~yDaVIa 140 (218)
+-..+||||+--.=.+.-++.++...+ ..... ++++..+ ++.-+-|- -++++ - +..+|||+|.
T Consensus 44 dirplkI~ILnlmp~k~~te~qf~rlL---~~~~~---qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglII 117 (312)
T 2h2w_A 44 DIRPLEILILNLMPDKIKTEIQLLRLL---GNTPL---QVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFII 117 (312)
T ss_dssp -CCCEEEEEECCCSSHHHHHHHHHHHH---HSSSS---CEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEE
T ss_pred CCCCceEEEEeCCCCcCchHHHHHHHh---cCCCC---cEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEE
Confidence 467899999998888876665544433 33332 3444322 44344221 22222 1 2378999999
Q ss_pred Eeeee-eCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHH-HHhhCC
Q 027801 141 IGAVV-RGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQA-LNRAGG 193 (218)
Q Consensus 141 LG~VI-rGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA-~~Rag~ 193 (218)
.|.-+ ..+...+.|+-. ...+++-..+.++|+..-=+. .|| +..++|
T Consensus 118 TGsP~~~~~~ed~~yw~e--l~~li~~~~~~~~p~LGIC~G----aQ~~l~~~~G 166 (312)
T 2h2w_A 118 TGAPVELLPFEEVDYWEE--LTEIMEWSRHNVYSTMFICWA----AQAGLYYFYG 166 (312)
T ss_dssp CCCSCTTSCGGGSTTHHH--HHHHHHHHHHHEEEEEEETHH----HHHHHHHHHC
T ss_pred CCCCCCCCCCccCchHHH--HHHHHHHHHHcCCcEEEECHH----HHHHHHHhCC
Confidence 99986 355555666633 556777777888888765444 455 555554
No 248
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=43.28 E-value=43 Score=29.13 Aligned_cols=69 Identities=9% Similarity=0.107 Sum_probs=40.2
Q ss_pred CcchHHHH---HHHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 118 GSFEIGVV---AQQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 118 GA~ELP~a---ak~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
|..+.+.. ++.++ ..+.||++++|.- ||..+... =-.++.+...+.. ...+||+.|+-. ++.+++++.+
T Consensus 24 g~iD~~~l~~lv~~li-~~Gv~gl~v~GtT--GE~~~Ls~~Er~~v~~~~~~~~-~grvpviaGvg~-~~t~~ai~la 96 (309)
T 3fkr_A 24 GDLDLASQKRAVDFMI-DAGSDGLCILANF--SEQFAITDDERDVLTRTILEHV-AGRVPVIVTTSH-YSTQVCAARS 96 (309)
T ss_dssp SSBCHHHHHHHHHHHH-HTTCSCEEESSGG--GTGGGSCHHHHHHHHHHHHHHH-TTSSCEEEECCC-SSHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH-HcCCCEEEECccc--cCcccCCHHHHHHHHHHHHHHh-CCCCcEEEecCC-chHHHHHHHH
Confidence 44554433 33343 4679999999986 88665411 0112222222222 357999999854 6777777665
No 249
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=43.16 E-value=43 Score=29.57 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=36.2
Q ss_pred CEEEEEEcc-cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCC--cchHHHHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVAR-FNELVTKLLLEGALETFKKYSVKEENIDVVW-VPG--SFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Sr-fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPG--A~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.|+.||..+ ..+. ..+++...+.|++.|+. +.++. |.+ .+|.=..+-..++..++|.||++|=
T Consensus 41 ~~~liVtd~~~~~~--~g~~~~v~~~L~~~g~~---~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 107 (371)
T 1o2d_A 41 KRALVVTGKSSSKK--NGSLDDLKKLLDETEIS---YEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGG 107 (371)
T ss_dssp SEEEEEEESSGGGT--SSHHHHHHHHHHHTTCE---EEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEES
T ss_pred CEEEEEECchHHhh--ccHHHHHHHHHHHcCCe---EEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 689999876 3222 02445556677877863 33332 333 2332222333345678999999983
No 250
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=43.16 E-value=75 Score=25.69 Aligned_cols=88 Identities=22% Similarity=0.195 Sum_probs=54.1
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
..||+++++. + .|.+-+.+.+.+++. ++++ +-|.|| -.-.++.+ .+++|.||+ ||.|..+
T Consensus 4 ~~~I~~iapy--~----~l~~~~~~i~~e~~~---~i~i--~~~~l~~~v~~a~~~--~~~~dVIIS-----RGgta~~- 64 (196)
T 2q5c_A 4 SLKIALISQN--E----NLLNLFPKLALEKNF---IPIT--KTASLTRASKIAFGL--QDEVDAIIS-----RGATSDY- 64 (196)
T ss_dssp CCEEEEEESC--H----HHHHHHHHHHHHHTC---EEEE--EECCHHHHHHHHHHH--TTTCSEEEE-----EHHHHHH-
T ss_pred CCcEEEEEcc--H----HHHHHHHHHHhhhCC---ceEE--EECCHHHHHHHHHHh--cCCCeEEEE-----CChHHHH-
Confidence 3577777764 2 444444555555433 4554 335576 33334455 578998887 4555432
Q ss_pred HHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCC
Q 027801 154 AVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGG 193 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~ 193 (218)
| + -..++||+.-=+|..+.-+|+.+|..
T Consensus 65 ---------l-r--~~~~iPVV~I~~s~~Dil~al~~a~~ 92 (196)
T 2q5c_A 65 ---------I-K--KSVSIPSISIKVTRFDTMRAVYNAKR 92 (196)
T ss_dssp ---------H-H--TTCSSCEEEECCCHHHHHHHHHHHGG
T ss_pred ---------H-H--HhCCCCEEEEcCCHhHHHHHHHHHHh
Confidence 2 2 23579999988888899899888863
No 251
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=43.08 E-value=46 Score=28.71 Aligned_cols=63 Identities=8% Similarity=0.024 Sum_probs=46.2
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..|++|+.. |....+.+.+...+++++.|.+.-..+.+ -++ -+.-..++++ ..+.|+|+..|.
T Consensus 122 ~k~vail~~--~~~yG~~~~~~F~~~~~~~Gg~vv~~~~y-~~~-~d~~~~l~~i--~~~pDaV~~~~~ 184 (325)
T 2h4a_A 122 VRNPLVAMP--QNDLGQRVGNAFNVRWQQLAGTDANIRYY-NLP-ADVTYFVQEN--NSNTTALYAVAS 184 (325)
T ss_dssp CCSCEEEEE--SSHHHHHHHHHHHHHHHHHHSSCCEEEEE-SST-THHHHHHHHS--TTCCCEEEECCC
T ss_pred CCeEEEEEc--CCcHHHHHHHHHHHHHHHcCCCcceeEec-CCH-HHHHHHHHhc--CCCCCEEEEeCC
Confidence 357899874 78899999999999999999863233333 344 5776666666 368999998653
No 252
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=42.27 E-value=42 Score=28.18 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=36.0
Q ss_pred CC-CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 72 KN-EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 72 ~~-~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
|. ++.||++....-... .++ ...|+++|+++++++++.++. -+ +...| ..++.||+++
T Consensus 150 DL~kGk~i~v~~~~s~~~---~~~---~~~l~~~Gl~~~dv~~~~~~~-~~---~~~al-~~G~vDa~~~ 208 (341)
T 3un6_A 150 NNGDDYHFGIPHRYSTHY---LLL---EELRKQLKIKPGHFSYHEMSP-AE---MPAAL-SEHRITGYSV 208 (341)
T ss_dssp SSSSCEEEEESCSSSHHH---HHH---HHHHHHTTCCTTSEEEEECCG-GG---HHHHH-HTTSCSEEEE
T ss_pred HhCCCCEEEECCCCCHHH---HHH---HHHHHHcCCCHHHeEEEEcCh-HH---HHHHH-HcCCCCEEEe
Confidence 44 777888864222222 122 235677899988999988852 23 23333 6789998765
No 253
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=42.09 E-value=47 Score=28.45 Aligned_cols=65 Identities=8% Similarity=0.017 Sum_probs=45.7
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
...||+||.. +......+.+...+.+++.|+. .+..... +|.-+.--.++++. ..+.|+|+..|.
T Consensus 163 ~~~~vail~~--~~~~g~~~~~~~~~~~~~~g~~--vv~~~~~~~~~~d~~~~l~~i~-~~~~d~v~~~~~ 228 (419)
T 3h5l_A 163 PNNKIAIITG--PGIYSVNIANAIRDGAGEYGYD--VSLFETVAIPVSDWGPTLAKLR-ADPPAVIVVTHF 228 (419)
T ss_dssp SSSEEEEEEC--SSHHHHHHHHHHHHHGGGGTCE--EEEEEECCSSCSCCHHHHHHHH-HSCCSEEEECCC
T ss_pred CCCEEEEEEc--CcchhHHHHHHHHHHHHHcCCe--EEEEecCCCCCccHHHHHHHHH-hcCCCEEEEccc
Confidence 3479999986 4577788899999999999975 2222333 46667666667763 457898887654
No 254
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=40.99 E-value=29 Score=28.42 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=36.4
Q ss_pred CCCCCEEEEEE-cccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 72 KNEGLRFALVV-ARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 72 ~~~~~RIaIV~-Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
|-++.||++.. ..-.. .+ ....|+++|+++++++++.+++.-|+.-+ +..+..|+++.
T Consensus 135 DL~Gk~i~~~~~gs~~~----~~---~~~~l~~~G~~~~~v~~~~~~~~~~~~~a----l~~G~vDa~~~ 193 (346)
T 3qsl_A 135 DLKGRKIGVTAPGSSTN----MV---VNFFLAKHGLKASDVSFIGVGAGAGAVTA----LRSGQIDAISN 193 (346)
T ss_dssp GGTTCEEEESSTTSHHH----HH---HHHHHHHTTCCGGGSEEEECCSSHHHHHH----HHHTSCSEEEE
T ss_pred HcCCCEEEECCCCcHHH----HH---HHHHHHHcCCCHHHeEEEecCCcHHHHHH----HHcCCccEEEe
Confidence 44677887752 22112 22 24456778998888999988766444433 24678888876
No 255
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=40.45 E-value=75 Score=27.23 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=42.0
Q ss_pred CCcchHHHHH---HHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 117 PGSFEIGVVA---QQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 117 PGA~ELP~aa---k~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
-|..+.+... +.++ ..+.||++++|.- ||..+... =-.++.+...+. ....+||+.|+-. ++.+++++.+
T Consensus 15 dg~iD~~~l~~lv~~li-~~Gv~gl~~~Gtt--GE~~~Ls~~Er~~v~~~~~~~-~~grvpviaGvg~-~~t~~ai~la 88 (294)
T 2ehh_A 15 EGEVDYEALGNLIEFHV-DNGTDAILVCGTT--GESPTLTFEEHEKVIEFAVKR-AAGRIKVIAGTGG-NATHEAVHLT 88 (294)
T ss_dssp TTEECHHHHHHHHHHHH-TTTCCEEEESSTT--TTGGGSCHHHHHHHHHHHHHH-HTTSSEEEEECCC-SCHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH-HCCCCEEEECccc--cChhhCCHHHHHHHHHHHHHH-hCCCCcEEEecCC-CCHHHHHHHH
Confidence 4777766543 3333 4679999999986 77765411 011233333333 2347999999966 5666666554
No 256
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=40.41 E-value=60 Score=23.13 Aligned_cols=80 Identities=18% Similarity=0.099 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHh
Q 027801 87 ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSA 166 (218)
Q Consensus 87 ~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~l 166 (218)
++..+..++...+.+++.|+...+++.....| +..-.+-..++..++|-| ++|.= | +.--+++-..+++.+.+
T Consensus 61 ~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~g--~~~~~I~~~a~~~~~dli-V~G~~--~-~~~~~~~~Gs~~~~v~~- 133 (143)
T 3fdx_A 61 DELREGSETQLKEIAKKFSIPEDRMHFHVAEG--SPKDKILALAKSLPADLV-IIASH--R-PDITTYLLGSNAAAVVR- 133 (143)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCGGGEEEEEEES--CHHHHHHHHHHHTTCSEE-EEESS--C-TTCCSCSSCHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEEEec--ChHHHHHHHHHHhCCCEE-EEeCC--C-CCCeeeeeccHHHHHHH-
Confidence 45566777777778888887766677777777 455555666777789954 56764 3 33334444555555554
Q ss_pred chhcCCceE
Q 027801 167 GVNSGVPCI 175 (218)
Q Consensus 167 sL~~~vPVi 175 (218)
+..+||.
T Consensus 134 --~~~~pVl 140 (143)
T 3fdx_A 134 --HAECSVL 140 (143)
T ss_dssp --HCSSEEE
T ss_pred --hCCCCEE
Confidence 3467765
No 257
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=40.32 E-value=36 Score=30.09 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHH
Q 027801 88 LVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVA 156 (218)
Q Consensus 88 ~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va 156 (218)
.++..+++.+.+.|+..|+. ++..|| |-=..+..|++.+..|+|+. ++.+=+.|++
T Consensus 123 ~vt~~~~~~~~~lL~~~gi~-----~i~ap~--EADa~ia~La~~g~~~~I~S------~D~D~l~~~~ 178 (346)
T 2izo_A 123 RLSNIMVEESKKLLRAMGIP-----IVQAPS--EGEAEAAYLNKLGLSWAAAS------QDYDAILFGA 178 (346)
T ss_dssp --CHHHHHHHHHHHHHHTCC-----EEECSS--CHHHHHHHHHHTTSSSEEEC------SSSHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHCCCC-----EEEcCC--cHHHHHHHHHhCCCeEEEEC------CCCCcceecC
Confidence 45567889999999999874 889999 88778888887776676643 4555444444
No 258
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=40.12 E-value=1.5e+02 Score=24.22 Aligned_cols=89 Identities=15% Similarity=0.061 Sum_probs=51.3
Q ss_pred CCEEEEEEccc--CHHHHHHHHHHHHHHHHH---CC-CCCCCeEEEEeCCcchH---HHHHHHhhhcCCccEEEEEeeee
Q 027801 75 GLRFALVVARF--NELVTKLLLEGALETFKK---YS-VKEENIDVVWVPGSFEI---GVVAQQLGKSGKYTAVLCIGAVV 145 (218)
Q Consensus 75 ~~RIaIV~Srf--n~~It~~Ll~gA~~~L~~---~G-v~~e~I~vv~VPGA~EL---P~aak~L~~~~~yDaVIaLG~VI 145 (218)
.+|||++...- .......+++++...+++ .| +.-..++++..-...+- --++++|++ .++|+||...+
T Consensus 2 ~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~~-- 78 (356)
T 3ipc_A 2 DVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVA-DGVKFVVGHAN-- 78 (356)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCEEEEEEECTTCHHHHHHHHHHHHH-TTCCEEEECSS--
T ss_pred eEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHH-CCCcEEEcCCC--
Confidence 36899998642 234455566666544444 43 33345777665544432 234566665 78999764321
Q ss_pred eCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 146 RGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 146 rGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
...+..+.++.-+.++|++..
T Consensus 79 -----------s~~~~~~~~~~~~~~ip~v~~ 99 (356)
T 3ipc_A 79 -----------SGVSIPASEVYAENGILEITP 99 (356)
T ss_dssp -----------HHHHHHHHHHHHTTTCEEEES
T ss_pred -----------cHHHHHHHHHHHhCCCeEEec
Confidence 223444556666789998863
No 259
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=40.08 E-value=70 Score=27.69 Aligned_cols=70 Identities=17% Similarity=0.327 Sum_probs=42.0
Q ss_pred CCcchHHHHH---HHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 117 PGSFEIGVVA---QQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 117 PGA~ELP~aa---k~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
-|..+.+... +.++ ..+.||++++|.- ||..+... =-.++.+...+. ....+||+.|+-+ ++.+++++.+
T Consensus 27 dg~iD~~~l~~lv~~li-~~Gv~gl~v~GtT--GE~~~Ls~eEr~~vi~~~~~~-~~grvpViaGvg~-~st~~ai~la 100 (306)
T 1o5k_A 27 NGELDLESYERLVRYQL-ENGVNALIVLGTT--GESPTVNEDEREKLVSRTLEI-VDGKIPVIVGAGT-NSTEKTLKLV 100 (306)
T ss_dssp TTEECHHHHHHHHHHHH-HTTCCEEEESSGG--GTGGGCCHHHHHHHHHHHHHH-HTTSSCEEEECCC-SCHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH-HcCCCEEEeCccc--cchhhCCHHHHHHHHHHHHHH-hCCCCeEEEcCCC-ccHHHHHHHH
Confidence 5777766543 3343 3679999999996 77765321 011222222232 2247999999866 5666666654
No 260
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=40.03 E-value=1.4e+02 Score=25.01 Aligned_cols=92 Identities=7% Similarity=-0.019 Sum_probs=52.8
Q ss_pred CCCCEEEEEEcccC--HHH-HHHHHHHHHHHHHHCC--CCCCCeEEEEeCCcch---HHHHHHHhhhcCCccEEEEEeee
Q 027801 73 NEGLRFALVVARFN--ELV-TKLLLEGALETFKKYS--VKEENIDVVWVPGSFE---IGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 73 ~~~~RIaIV~Srfn--~~I-t~~Ll~gA~~~L~~~G--v~~e~I~vv~VPGA~E---LP~aak~L~~~~~yDaVIaLG~V 144 (218)
.+..|||++...=. ..+ ...+.+++.-.+++.+ +.-..++++..-...+ ---++++|++..+.|+||. ..
T Consensus 4 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG--~~ 81 (379)
T 3n0w_A 4 TGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGKALGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFD--VV 81 (379)
T ss_dssp --CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTTEETTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEE--CC
T ss_pred CCcEEEEEEeCCccccccccCHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEc--CC
Confidence 45789999987411 222 4456667776766652 2223455555443333 2334566776688998864 22
Q ss_pred eeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 145 VRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 145 IrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
+...+..+.++.-+.++|++.-
T Consensus 82 -----------~s~~~~a~~~~~~~~~ip~i~~ 103 (379)
T 3n0w_A 82 -----------NSGTALAINNLVKDKKKLAFIT 103 (379)
T ss_dssp -----------CHHHHHHHHHHHHHHTCEEEEC
T ss_pred -----------CcHHHHHHHHHHHHcCceEEEc
Confidence 1233445566666789998875
No 261
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=39.75 E-value=1.7e+02 Score=24.60 Aligned_cols=90 Identities=14% Similarity=0.034 Sum_probs=53.3
Q ss_pred CCCEEEEEEcc--cCHHHHHHHHHHHHHHHHH---CC-C--CCC--CeEEEEeCCcchHH---HHHHHhhhcCCccEEEE
Q 027801 74 EGLRFALVVAR--FNELVTKLLLEGALETFKK---YS-V--KEE--NIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 74 ~~~RIaIV~Sr--fn~~It~~Ll~gA~~~L~~---~G-v--~~e--~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIa 140 (218)
+..|||++... -+......+++++.-.+++ .| + .-. .++++..-...+-. -++++|+...+.|+||.
T Consensus 3 ~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~iiG 82 (391)
T 3eaf_A 3 LTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAIIG 82 (391)
T ss_dssp EEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEE
Confidence 34689999853 2345556666666655555 22 2 223 46666665555433 34567776788999875
Q ss_pred EeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 141 IGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 141 LG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
. + +. .+..+.++.-+.++|++..
T Consensus 83 ~-~-----s~--------~~~a~~~~~~~~~iP~i~~ 105 (391)
T 3eaf_A 83 W-G-----TA--------DTEKLSDQVDTDKITYISA 105 (391)
T ss_dssp C-C-----HH--------HHHHHHHHHHHHTCEEEES
T ss_pred c-C-----cH--------HHHHHHHHHhhcCCeEEec
Confidence 2 1 11 2334455556679999873
No 262
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=39.75 E-value=61 Score=27.85 Aligned_cols=69 Identities=22% Similarity=0.358 Sum_probs=40.4
Q ss_pred CcchHHHH---HHHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 118 GSFEIGVV---AQQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 118 GA~ELP~a---ak~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
|..+.+.. ++.++ ..+.||++++|.- ||..+... =-.++.+...+.. ...+||+.|+-. ++.+++++.+
T Consensus 19 g~iD~~~l~~lv~~li-~~Gv~gl~~~Gtt--GE~~~Ls~~Er~~v~~~~~~~~-~gr~pviaGvg~-~~t~~ai~la 91 (294)
T 3b4u_A 19 GTVDIDAMIAHARRCL-SNGCDSVTLFGTT--GEGCSVGSRERQAILSSFIAAG-IAPSRIVTGVLV-DSIEDAADQS 91 (294)
T ss_dssp SSBCHHHHHHHHHHHH-HTTCSEEEESSTT--TTGGGSCHHHHHHHHHHHHHTT-CCGGGEEEEECC-SSHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH-HcCCCEEEECccc--cChhhCCHHHHHHHHHHHHHHh-CCCCcEEEeCCC-ccHHHHHHHH
Confidence 55555543 33344 3679999999986 77665421 1123333333332 347999999876 5666666554
No 263
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=39.61 E-value=51 Score=28.27 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=36.4
Q ss_pred HHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 127 QQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 127 k~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
+.++ ..+.||++++|.- ||..+... =-.++.+...+. ....+||+.|+-+ ++.+++++.+
T Consensus 29 ~~li-~~Gv~gl~~~Gtt--GE~~~Ls~~Er~~v~~~~~~~-~~gr~pvi~Gvg~-~~t~~ai~la 89 (291)
T 3a5f_A 29 EWHI-KSKTDAIIVCGTT--GEATTMTETERKETIKFVIDK-VNKRIPVIAGTGS-NNTAASIAMS 89 (291)
T ss_dssp HHHH-HTTCCEEEESSGG--GTGGGSCHHHHHHHHHHHHHH-HTTSSCEEEECCC-SSHHHHHHHH
T ss_pred HHHH-HcCCCEEEECccc--cChhhCCHHHHHHHHHHHHHH-hCCCCcEEEeCCc-ccHHHHHHHH
Confidence 3444 3679999999986 77765311 011223333333 2347999999866 5666676664
No 264
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=39.43 E-value=71 Score=27.31 Aligned_cols=70 Identities=14% Similarity=0.252 Sum_probs=42.0
Q ss_pred CCcchHHHHHH---HhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 117 PGSFEIGVVAQ---QLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 117 PGA~ELP~aak---~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
-|..+.+...+ .++ ..+.||++++|.- ||..+... =-.++.+...+. ....+||+.|+-+ ++.+++++.+
T Consensus 15 dg~iD~~~l~~lv~~li-~~Gv~gl~~~Gtt--GE~~~Ls~~Er~~v~~~~~~~-~~gr~pviaGvg~-~~t~~ai~la 88 (289)
T 2yxg_A 15 NKEVDFDGLEENINFLI-ENGVSGIVAVGTT--GESPTLSHEEHKKVIEKVVDV-VNGRVQVIAGAGS-NCTEEAIELS 88 (289)
T ss_dssp TTEECHHHHHHHHHHHH-HTTCSEEEESSTT--TTGGGSCHHHHHHHHHHHHHH-HTTSSEEEEECCC-SSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH-HCCCCEEEECccc--cChhhCCHHHHHHHHHHHHHH-hCCCCcEEEeCCC-CCHHHHHHHH
Confidence 57777665433 333 4679999999986 88775421 011222222222 2347999999866 5666666654
No 265
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=38.89 E-value=60 Score=28.07 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=40.2
Q ss_pred CcchHHHH---HHHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 118 GSFEIGVV---AQQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 118 GA~ELP~a---ak~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
|..+.+.. ++.++ ..+.||++++|.- ||..+... =-.++.+...+. ....+||+.|+-. ++.+++++.+
T Consensus 32 g~iD~~~l~~lv~~li-~~Gv~gl~v~Gtt--GE~~~Ls~~Er~~v~~~~~~~-~~grvpviaGvg~-~st~~ai~la 104 (304)
T 3cpr_A 32 GDIDIAAGREVAAYLV-DKGLDSLVLAGTT--GESPTTTAAEKLELLKAVREE-VGDRAKLIAGVGT-NNTRTSVELA 104 (304)
T ss_dssp SCBCHHHHHHHHHHHH-HTTCCEEEESSTT--TTTTTSCHHHHHHHHHHHHHH-HTTTSEEEEECCC-SCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH-HcCCCEEEECccc--cChhhCCHHHHHHHHHHHHHH-hCCCCcEEecCCC-CCHHHHHHHH
Confidence 44554433 33444 3579999999996 77765311 011223333333 2347999999865 6666676654
No 266
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=38.22 E-value=1e+02 Score=25.95 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=46.0
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
...||+|+... ......+.+...+.+++.|.. .+...++ +|.-+.--.+.++. ..+.|+|+++..
T Consensus 138 g~k~vaii~~~--~~~g~~~~~~~~~~~~~~g~~--vv~~~~~~~~~~d~~~~l~~i~-~~~pd~v~~~~~ 203 (371)
T 4f06_A 138 GATKVAIAVSD--YGPGIDAETAFKKTFEAEGGK--VVEAVRMPLSTTDFGPIMQRIK-NSGADMIFTFLP 203 (371)
T ss_dssp TCCEEEEEEES--SHHHHHHHHHHHHHHHHTTCE--EEEEEEECTTCCCCHHHHHHHH-HHTCSEEEEECC
T ss_pred CceEEEEEcCC--cccchhHHHHHHHHHHhcCCc--eEEEEecCcccccHHHHHHHHH-hcCCCEEEEEec
Confidence 35699999864 456677888999999999985 3444444 57777666667763 457899876554
No 267
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=38.21 E-value=30 Score=30.57 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=35.9
Q ss_pred CEEEEEEcccCHHHHHH-HHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHHH--HHHhhhcCCccEEEEEe
Q 027801 76 LRFALVVARFNELVTKL-LLEGALETFKKYSVKEENIDVVW-VPGSFEIGVV--AQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~-Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~a--ak~L~~~~~yDaVIaLG 142 (218)
.|+.||..+ .+.+. +++...+.|++.|+. +.++. |++--.+-.+ +-..++..++|.||++|
T Consensus 32 ~~~livtd~---~~~~~g~~~~v~~~L~~~g~~---~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG 96 (386)
T 1rrm_A 32 QKALIVTDK---TLVQCGVVAKVTDKMDAAGLA---WAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIG 96 (386)
T ss_dssp CEEEEECBH---HHHHTTHHHHHHHHHHHTTCE---EEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CEEEEEECc---chhhchHHHHHHHHHHHcCCe---EEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeC
Confidence 488888754 33333 677788888888863 33332 3222222222 22234567889999998
No 268
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=38.18 E-value=34 Score=29.86 Aligned_cols=45 Identities=22% Similarity=0.209 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 89 VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 89 It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
++..++..+.+.|+..|++ ++..|| |-=..+..|++.+..|+|+.
T Consensus 127 vt~~~~~~~~~lL~~~gi~-----~i~apg--EAD~~ia~La~~g~~~~I~S 171 (326)
T 1a76_A 127 LTPKMVENCKYLLSLMGIP-----YVEAPS--EGEAQASYMAKKGDVWAVVS 171 (326)
T ss_dssp SCHHHHHHHHHHHHHHTCC-----EEECSS--CHHHHHHHHHHTTSSSEEEC
T ss_pred CCHHHHHHHHHHHHHcCCC-----eEECCc--cHHHHHHHHHHCCCEEEEec
Confidence 3456888999999999874 889999 88888888887776676643
No 269
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=37.97 E-value=48 Score=28.43 Aligned_cols=69 Identities=13% Similarity=0.222 Sum_probs=40.7
Q ss_pred CcchHHHH---HHHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 118 GSFEIGVV---AQQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 118 GA~ELP~a---ak~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
|..+.+.. ++.+++ .+.||++++|.- ||..+... =-.++.+...+. ....+||+.|+-+ ++.+++++.+
T Consensus 17 g~iD~~~l~~lv~~li~-~Gv~gl~~~Gtt--GE~~~Ls~~Er~~v~~~~~~~-~~gr~pviaGvg~-~~t~~ai~la 89 (292)
T 2ojp_A 17 GNVCRASLKKLIDYHVA-SGTSAIVSVGTT--GESATLNHDEHADVVMMTLDL-ADGRIPVIAGTGA-NATAEAISLT 89 (292)
T ss_dssp SCBCHHHHHHHHHHHHH-HTCCEEEESSTT--TTGGGSCHHHHHHHHHHHHHH-HTTSSCEEEECCC-SSHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH-cCCCEEEECccc--cchhhCCHHHHHHHHHHHHHH-hCCCCcEEEecCC-ccHHHHHHHH
Confidence 45555533 344443 579999999986 87765421 012233333333 2347999999865 6667776665
No 270
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=37.71 E-value=70 Score=27.60 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=39.4
Q ss_pred CcchHHHH---HHHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 118 GSFEIGVV---AQQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 118 GA~ELP~a---ak~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
|..+.+.. ++.++ ..+.||++++|.- ||..+... =-.++.+...+. ....+||+.|+-. ++.+++++.+
T Consensus 28 g~iD~~~l~~lv~~li-~~Gv~gl~v~GtT--GE~~~Ls~eEr~~v~~~~~~~-~~grvpViaGvg~-~~t~~ai~la 100 (301)
T 1xky_A 28 GNIDFAKTTKLVNYLI-DNGTTAIVVGGTT--GESPTLTSEEKVALYRHVVSV-VDKRVPVIAGTGS-NNTHASIDLT 100 (301)
T ss_dssp SSBCHHHHHHHHHHHH-HTTCCEEEESSTT--TTGGGSCHHHHHHHHHHHHHH-HTTSSCEEEECCC-SCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH-HcCCCEEEECccc--cChhhCCHHHHHHHHHHHHHH-hCCCceEEeCCCC-CCHHHHHHHH
Confidence 44444433 34444 3579999999986 77765311 011222222222 2347999999866 5666666554
No 271
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=37.63 E-value=69 Score=27.98 Aligned_cols=69 Identities=13% Similarity=0.163 Sum_probs=39.9
Q ss_pred CcchHHHH---HHHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 118 GSFEIGVV---AQQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 118 GA~ELP~a---ak~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
|..+.+.. ++.++ ..+.||++++|.- ||..+... =-.++.+-..+.. ...+||+.|+-. ++.+++++.+
T Consensus 27 g~iD~~~l~~lv~~li-~~Gv~gl~v~GtT--GE~~~Ls~~Er~~v~~~~~~~~-~grvpviaGvg~-~~t~~ai~la 99 (318)
T 3qfe_A 27 DTLDLASQERYYAYLA-RSGLTGLVILGTN--AEAFLLTREERAQLIATARKAV-GPDFPIMAGVGA-HSTRQVLEHI 99 (318)
T ss_dssp TEECHHHHHHHHHHHH-TTTCSEEEESSGG--GTGGGSCHHHHHHHHHHHHHHH-CTTSCEEEECCC-SSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-HcCCCEEEeCccc--cChhhCCHHHHHHHHHHHHHHh-CCCCcEEEeCCC-CCHHHHHHHH
Confidence 44554443 33343 4689999999996 77655311 0012222222222 457999999855 6777776664
No 272
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=37.43 E-value=70 Score=27.48 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=39.3
Q ss_pred CcchHHHH---HHHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 118 GSFEIGVV---AQQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 118 GA~ELP~a---ak~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
|..+.+.. ++.++ ..+.||++++|.- ||..+... =-.++.+...+.. ...+||+.|+-+ ++.+++++++
T Consensus 23 g~iD~~~l~~lv~~li-~~Gv~gl~~~Gtt--GE~~~Ls~~Er~~v~~~~~~~~-~grvpviaGvg~-~~t~~ai~la 95 (297)
T 3flu_A 23 GSIHYEQLRDLIDWHI-ENGTDGIVAVGTT--GESATLSVEEHTAVIEAVVKHV-AKRVPVIAGTGA-NNTVEAIALS 95 (297)
T ss_dssp SCBCHHHHHHHHHHHH-HTTCCEEEESSTT--TTGGGSCHHHHHHHHHHHHHHH-TTSSCEEEECCC-SSHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH-HcCCCEEEeCccc--cCcccCCHHHHHHHHHHHHHHh-CCCCcEEEeCCC-cCHHHHHHHH
Confidence 44444433 33343 4679999999986 87655411 0112222222222 247999999865 6666776654
No 273
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=37.43 E-value=74 Score=30.83 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=45.8
Q ss_pred CCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhH
Q 027801 73 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHY 152 (218)
Q Consensus 73 ~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~ 152 (218)
..+.||+||. ++...+..+ .+.|.+.|+. +++++..-. .+..+||+||..|-. |.....
T Consensus 444 ~~Gk~IlviD--~gdsf~~~l----~~~l~~~G~~---v~Vv~~d~~----------~~~~~~DgIIlsGGP--g~p~d~ 502 (645)
T 3r75_A 444 LSGCRALIVD--AEDHFTAMI----AQQLSSLGLA---TEVCGVHDA----------VDLARYDVVVMGPGP--GDPSDA 502 (645)
T ss_dssp STTCEEEEEE--SSCTHHHHH----HHHHHHTTCE---EEEEETTCC----------CCGGGCSEEEECCCS--SCTTCT
T ss_pred CCCCEEEEEE--CCccHHHHH----HHHHHHCCCE---EEEEECCCc----------ccccCCCEEEECCCC--CChhhh
Confidence 3567898886 444444443 3344556763 555543321 122479999998765 443333
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
+.-.-.....+.+-.++.++|| +||
T Consensus 503 ~~p~i~~~~~lI~~a~~~~iPi-LGI 527 (645)
T 3r75_A 503 GDPRIARLYAWLRHLIDEGKPF-MAV 527 (645)
T ss_dssp TSHHHHHHHHHHHHHHHHTCCE-EEE
T ss_pred hhhhHHHHHHHHHHHHHCCCCE-EEE
Confidence 2212222334555556779995 566
No 274
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=37.28 E-value=49 Score=26.84 Aligned_cols=60 Identities=15% Similarity=0.056 Sum_probs=41.6
Q ss_pred HHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHH
Q 027801 97 ALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGV 163 (218)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gL 163 (218)
..+.|++.|+. -.....||.-.| |=-+++++++ ++|.||+-|-+ | -.|+|+..+++...+
T Consensus 28 l~~~L~~~G~~--v~~~~iv~Dd~~~I~~~l~~a~~--~~DlVittGG~--g-~~~~D~T~ea~a~~~ 88 (172)
T 3kbq_A 28 IGNFLTYHGYQ--VRRGFVVMDDLDEIGWAFRVALE--VSDLVVSSGGL--G-PTFDDMTVEGFAKCI 88 (172)
T ss_dssp HHHHHHHTTCE--EEEEEEECSCHHHHHHHHHHHHH--HCSEEEEESCC--S-SSTTCCHHHHHHHHH
T ss_pred HHHHHHHCCCE--EEEEEEeCCCHHHHHHHHHHHHh--cCCEEEEcCCC--c-CCcccchHHHHHHHc
Confidence 45677888984 455667898877 4445566554 49999999998 3 456777777766543
No 275
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=37.05 E-value=64 Score=26.34 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=53.2
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE--------eCCcchHH---HHHHHhhhc----CCccEEE
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW--------VPGSFEIG---VVAQQLGKS----GKYTAVL 139 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~--------VPGA~ELP---~aak~L~~~----~~yDaVI 139 (218)
..||+++...-.......=.+|..+.|++++-. .++.+.. ..+.|... -+++.+++. .++|||+
T Consensus 131 ~~~i~~i~g~~~~~~~~~R~~Gf~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~ 209 (330)
T 3uug_A 131 PFNIELFGGSPDDNNAFFFYDGAMSVLKPYIDS-GKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVL 209 (330)
T ss_dssp CEEEEECBCCTTCHHHHHHHHHHHHHHHHHHHH-TSEECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEEE
T ss_pred ceEEEEEECCCCCchHHHHHHHHHHHHHhcccc-CceEEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 348999987766666666779999999987210 0122210 23555432 234555553 6899998
Q ss_pred EEeeeeeCCchhHHHHHHHHHHHHHHhchh
Q 027801 140 CIGAVVRGDTTHYDAVANSAASGVLSAGVN 169 (218)
Q Consensus 140 aLG~VIrGeT~H~e~Va~~vs~gLm~lsL~ 169 (218)
|.. |.++-.+.+++.+..++
T Consensus 210 ~~n----------d~~A~g~~~al~~~g~~ 229 (330)
T 3uug_A 210 SPY----------DGLSIGIISSLKGVGYG 229 (330)
T ss_dssp CSS----------HHHHHHHHHHHHHTTCS
T ss_pred ECC----------CchHHHHHHHHHHcCCC
Confidence 643 56788888888887775
No 276
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=37.05 E-value=1.6e+02 Score=23.68 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=55.6
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE--eCC-cchHHHHHHHhhhcCCccEEEEEeeeee----CC
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW--VPG-SFEIGVVAQQLGKSGKYTAVLCIGAVVR----GD 148 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~--VPG-A~ELP~aak~L~~~~~yDaVIaLG~VIr----Ge 148 (218)
+||+|-...|..+.... ++.+++.+++.|++ -|++.. .|. .-+-+-.++++++..+.....+.|..-. +.
T Consensus 2 Mkigi~~~~~~~~~~~~-~~~~l~~~~~~G~~--~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~l~~~ 78 (294)
T 3vni_A 2 MKHGIYYAYWEQEWEAD-YKYYIEKVAKLGFD--ILEIAASPLPFYSDIQINELKACAHGNGITLTVGHGPSAEQNLSSP 78 (294)
T ss_dssp CCEEEEGGGGCSSSCCC-HHHHHHHHHHHTCS--EEEEESTTGGGCCHHHHHHHHHHHHHTTCEEEEEECCCGGGCTTCS
T ss_pred eeEEEehhhhcCCcCcC-HHHHHHHHHHcCCC--EEEecCcccCCcCHHHHHHHHHHHHHcCCeEEEeecCCCCcCCCCC
Confidence 68899988888632212 46778888999985 455442 111 1122334455556666655443433210 00
Q ss_pred chhHHHHHHHHHHHHHHhchhcCCceEEEEcC
Q 027801 149 TTHYDAVANSAASGVLSAGVNSGVPCIFGVLT 180 (218)
Q Consensus 149 T~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT 180 (218)
.+-.---+-+..+..+++.-+.|.+.+.+++.
T Consensus 79 d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~ 110 (294)
T 3vni_A 79 DPDIRKNAKAFYTDLLKRLYKLDVHLIGGALY 110 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCEEEESTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeeecccc
Confidence 11100112234556777888889999986653
No 277
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=36.56 E-value=73 Score=27.52 Aligned_cols=69 Identities=10% Similarity=-0.009 Sum_probs=39.6
Q ss_pred CcchHHHH---HHHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 118 GSFEIGVV---AQQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 118 GA~ELP~a---ak~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
|..+.... ++.++ ..+.||++++|.- ||..+... =-.++.+...+. ....+||+.|+-+ ++.+++++.+
T Consensus 27 g~iD~~~l~~lv~~li-~~Gv~Gl~v~GtT--GE~~~Ls~eEr~~v~~~~~~~-~~grvpViaGvg~-~~t~~ai~la 99 (303)
T 2wkj_A 27 QALDKASLRRLVQFNI-QQGIDGLYVGGST--GEAFVQSLSEREQVLEIVAEE-AKGKIKLIAHVGC-VSTAESQQLA 99 (303)
T ss_dssp SSBCHHHHHHHHHHHH-HTTCSEEEESSTT--TTGGGSCHHHHHHHHHHHHHH-HTTTSEEEEECCC-SSHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH-HcCCCEEEECeec--cChhhCCHHHHHHHHHHHHHH-hCCCCcEEEecCC-CCHHHHHHHH
Confidence 44444433 34444 3679999999986 77765311 011222323332 2347999999865 5666666654
No 278
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=36.55 E-value=25 Score=31.19 Aligned_cols=65 Identities=8% Similarity=0.054 Sum_probs=35.5
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCc--chHHHHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVW-VPGS--FEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA--~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.|+.||..+.-......+++...+.|++.|+. +.++. |.+- +|.=..+-..++..++|.||++|=
T Consensus 34 ~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~---~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 101 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIE---VAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGG 101 (387)
T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHHTTCE---EEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CEEEEEECcchhhccchHHHHHHHHHHHcCCe---EEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 58888886543221001466677788888863 32221 2222 222222233346678999999983
No 279
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=36.42 E-value=60 Score=26.62 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=46.1
Q ss_pred CCEEEEEEcc---cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVAR---FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Sr---fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
.+|++||..- ....+.|.=-....+.|++.|.....+....||.-.| |=-+++.+++..++|-||+-|-+ |- .
T Consensus 3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGt--g~-g 79 (195)
T 1di6_A 3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGT--GP-A 79 (195)
T ss_dssp CEEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCC--SS-S
T ss_pred CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC--CC-C
Confidence 4577777631 1112222111223445666786411255677898876 44566666665689999999988 33 3
Q ss_pred hHHHHHHHHHH
Q 027801 151 HYDAVANSAAS 161 (218)
Q Consensus 151 H~e~Va~~vs~ 161 (218)
++|+.-+++..
T Consensus 80 ~~D~T~ea~~~ 90 (195)
T 1di6_A 80 RRDVTPDATLA 90 (195)
T ss_dssp TTCCHHHHHHH
T ss_pred CCccHHHHHHH
Confidence 44555555443
No 280
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=35.96 E-value=44 Score=29.57 Aligned_cols=56 Identities=7% Similarity=0.135 Sum_probs=35.4
Q ss_pred CCCCEEEEEE-cccCHHHHHHHHHHHHHHHHHCCCCCC-CeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 73 NEGLRFALVV-ARFNELVTKLLLEGALETFKKYSVKEE-NIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 73 ~~~~RIaIV~-Srfn~~It~~Ll~gA~~~L~~~Gv~~e-~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
.++.|||+.. +.-+. .++ ...|+++|++++ +++++.+|.. + +...| +.++.||+++
T Consensus 153 LkGk~iav~~~gs~~~----~~l---~~~L~~~Gl~~~~dv~~v~~~~~-~---~~~aL-~~G~vDa~~~ 210 (417)
T 2g29_A 153 VTDPKVAMTFPGGTHD----MWI---RYWLAAGGMEPGKDFSTIVVPPA-Q---MVANV-KVNAMESFCV 210 (417)
T ss_dssp SSSCEEEESSTTSHHH----HHH---HHHHHHTTCCBTTTBEEEECCGG-G---HHHHH-HTTSCSEEEE
T ss_pred cCCCEEEEeCCCCHHH----HHH---HHHHHHcCCCCCCceEEEECCHH-H---HHHHH-HcCCCCEEEe
Confidence 4578998863 22222 232 346777899876 8999888642 3 33333 5789999854
No 281
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=35.82 E-value=85 Score=27.13 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=34.6
Q ss_pred cCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 132 SGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 132 ~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
..+.||++++|.- ||..+... =-.++.+...+. ....+||+.|+-. ++.+++++.+
T Consensus 46 ~~Gv~Gl~v~GtT--GE~~~Ls~~Er~~v~~~~~~~-~~gr~pviaGvg~-~~t~~ai~la 102 (307)
T 3s5o_A 46 TFPFRGFVVQGSN--GEFPFLTSSERLEVVSRVRQA-MPKNRLLLAGSGC-ESTQATVEMT 102 (307)
T ss_dssp TSCCSEEEESSGG--GTGGGSCHHHHHHHHHHHHHT-SCTTSEEEEECCC-SSHHHHHHHH
T ss_pred HcCCCEEEECccc--cchhhCCHHHHHHHHHHHHHH-cCCCCcEEEecCC-CCHHHHHHHH
Confidence 4679999999986 77655311 112233333333 2358999999855 6667776654
No 282
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=35.77 E-value=1.8e+02 Score=23.84 Aligned_cols=93 Identities=18% Similarity=0.250 Sum_probs=60.6
Q ss_pred CCCCEEEEEEcc--cCHHHHHHHHHHH---HHHHHHCC-CCCCCeEEEEeCCcchH---HHHHHHhhhcCCccEEEEEee
Q 027801 73 NEGLRFALVVAR--FNELVTKLLLEGA---LETFKKYS-VKEENIDVVWVPGSFEI---GVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 73 ~~~~RIaIV~Sr--fn~~It~~Ll~gA---~~~L~~~G-v~~e~I~vv~VPGA~EL---P~aak~L~~~~~yDaVIaLG~ 143 (218)
.+..|||++... -+..+-..+++++ ++++.+.| +.-..++++..-...+- --++++|++.++.++++ |.
T Consensus 5 ~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~--g~ 82 (353)
T 4gnr_A 5 EKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVV--GP 82 (353)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEE--CC
T ss_pred CCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEe--cc
Confidence 566899999864 3556666666665 45555553 55557888877555443 34557777777777766 33
Q ss_pred eeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 144 VVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 144 VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
. +..++..+..+.-+.++|.+...
T Consensus 83 ~-----------~s~~~~a~~~~~~~~~vp~i~~~ 106 (353)
T 4gnr_A 83 A-----------TSGATAAAVANATKAGVPLISPS 106 (353)
T ss_dssp C-----------SHHHHHHHHHHHHHTTCCEEESS
T ss_pred c-----------cCcccceehhhhhccCcceEeec
Confidence 2 34556667788888899988754
No 283
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=35.49 E-value=56 Score=26.57 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=33.8
Q ss_pred CCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEE
Q 027801 71 TKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLC 140 (218)
Q Consensus 71 ~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIa 140 (218)
.+-++.||++..... .+.++ ...|+++|++++++.++.++ .+-+.+. +..++.|+++.
T Consensus 101 ~dL~Gk~i~~~~gs~----~~~~l---~~~l~~~Gl~~~~v~~~~~~----~~~~~~a-l~~G~vDa~~~ 158 (308)
T 2x26_A 101 ADLKGHKVAFQKGSS----SHNLL---LRALRQAGLKFTDIQPTYLT----PADARAA-FQQGNVDAWAI 158 (308)
T ss_dssp GGGTTSEEEECTTSH----HHHHH---HHHHHHTTCCGGGSEEEECC----HHHHHHH-HHTTSSSEEEE
T ss_pred HHcCCCEEeeeCCCc----HHHHH---HHHHHHcCCCHHHeEEEecC----hHHHHHH-HHcCCCCEEEe
Confidence 345678998842221 22333 34567789987777665443 2333333 46789999764
No 284
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=35.48 E-value=1e+02 Score=26.36 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=36.6
Q ss_pred HHHhhhcCCccEEEEEeeeeeCCchhH--HHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 126 AQQLGKSGKYTAVLCIGAVVRGDTTHY--DAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 126 ak~L~~~~~yDaVIaLG~VIrGeT~H~--e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
++.++ ..+.||++++|.- ||..+. |-- .++.+...+.. ...+||+.|+-. ++.+++++.+
T Consensus 29 v~~li-~~Gv~gl~v~Gtt--GE~~~Lt~~Er-~~v~~~~~~~~-~grvpviaGvg~-~~t~~ai~la 90 (292)
T 3daq_A 29 VNFLL-ENNAQAIIVNGTT--AESPTLTTDEK-ELILKTVIDLV-DKRVPVIAGTGT-NDTEKSIQAS 90 (292)
T ss_dssp HHHHH-HTTCCEEEESSGG--GTGGGSCHHHH-HHHHHHHHHHH-TTSSCEEEECCC-SCHHHHHHHH
T ss_pred HHHHH-HcCCCEEEECccc--cccccCCHHHH-HHHHHHHHHHh-CCCCcEEEeCCc-ccHHHHHHHH
Confidence 34444 4679999999986 886663 211 12222222222 357999999755 6667777665
No 285
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=35.22 E-value=43 Score=28.80 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=25.7
Q ss_pred CCEEEEEEcccC-------------HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC
Q 027801 75 GLRFALVVARFN-------------ELVTKLLLEGALETFKKYSVKEENIDVVWVPG 118 (218)
Q Consensus 75 ~~RIaIV~Srfn-------------~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG 118 (218)
+.||+||.+..+ -+..+. -+..+.|.+.|+ +++++..-|
T Consensus 48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~--~~p~~vL~~ag~---~v~i~S~~g 99 (291)
T 1n57_A 48 KHKILVIAADERYLPTDNGKLFSTGNHPIET--LLPLYHLHAAGF---EFEVATISG 99 (291)
T ss_dssp SCEEEEECCSCCEEECTTSCEEECCBCHHHH--HHHHHHHHHTTC---CEEEEESSS
T ss_pred CCEEEEEeCCcccccccCCccCCCCCcHHHH--HHHHHHHHHCCC---EEEEEeCCC
Confidence 359999999731 111222 367788988887 488887644
No 286
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=34.96 E-value=81 Score=27.28 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=35.5
Q ss_pred HHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 127 QQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 127 k~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
+.++ ..+.||++++|.- ||..+... =-.++.+...+.. ...+||+.|+-+ ++.+++++++
T Consensus 43 ~~li-~~Gv~gi~v~Gtt--GE~~~Lt~~Er~~v~~~~~~~~-~grvpviaGvg~-~~t~~ai~la 103 (304)
T 3l21_A 43 NHLV-DQGCDGLVVSGTT--GESPTTTDGEKIELLRAVLEAV-GDRARVIAGAGT-YDTAHSIRLA 103 (304)
T ss_dssp HHHH-HTTCSEEEESSTT--TTGGGSCHHHHHHHHHHHHHHH-TTTSEEEEECCC-SCHHHHHHHH
T ss_pred HHHH-HcCCCEEEeCccc--cchhhCCHHHHHHHHHHHHHHh-CCCCeEEEeCCC-CCHHHHHHHH
Confidence 4444 3679999999986 77655310 0112222222221 347999999744 6777777765
No 287
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=34.87 E-value=1.5e+02 Score=22.55 Aligned_cols=88 Identities=11% Similarity=0.080 Sum_probs=48.8
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAV 155 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~V 155 (218)
+||.||...-+- =|+.|.+...+.|.+.|++ ++++.++.. +..-....+ .+||+|| +|+-+-|...- +
T Consensus 1 Mkv~IvY~S~tG-nT~~~A~~ia~~l~~~g~~---v~~~~~~~~-~~~~~~~~~---~~~d~ii-~Gspty~g~~p-~-- 68 (161)
T 3hly_A 1 MSVLIGYLSDYG-YSDRLSQAIGRGLVKTGVA---VEMVDLRAV-DPQELIEAV---SSARGIV-LGTPPSQPSEA-V-- 68 (161)
T ss_dssp -CEEEEECTTST-THHHHHHHHHHHHHHTTCC---EEEEETTTC-CHHHHHHHH---HHCSEEE-EECCBSSCCHH-H--
T ss_pred CEEEEEEECCCh-HHHHHHHHHHHHHHhCCCe---EEEEECCCC-CHHHHHHHH---HhCCEEE-EEcCCcCCchh-H--
Confidence 467788765542 2667777777888888874 778877643 222222233 3589765 55554443322 1
Q ss_pred HHHHHHHHHHhchhcCCceE-EE
Q 027801 156 ANSAASGVLSAGVNSGVPCI-FG 177 (218)
Q Consensus 156 a~~vs~gLm~lsL~~~vPVi-fG 177 (218)
.....-+....++ ++|++ ||
T Consensus 69 -~~fl~~l~~~~l~-gk~v~~fg 89 (161)
T 3hly_A 69 -ATALSTIFAAAHN-KQAIGLFD 89 (161)
T ss_dssp -HHHHHHHHHHCCT-TSEEEEEC
T ss_pred -HHHHHHHHhhhhC-CCEEEEEE
Confidence 3333444444454 66664 44
No 288
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=34.87 E-value=1.4e+02 Score=23.52 Aligned_cols=79 Identities=9% Similarity=0.005 Sum_probs=46.4
Q ss_pred CCEEEEEEcc---cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 75 GLRFALVVAR---FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 75 ~~RIaIV~Sr---fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
..|++|+.+- ..-.+.|.=-.-..+.|++.|.. .+....||.- | |=-+++++++ .++|.||+-|-+=-|
T Consensus 7 ~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~--v~~~~iv~Dd-~~i~~al~~a~~-~~~DlVittGG~s~g--- 79 (164)
T 3pzy_A 7 TRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFS--SAQPEVVADG-SPVGEALRKAID-DDVDVILTSGGTGIA--- 79 (164)
T ss_dssp CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCE--ECCCEEECSS-HHHHHHHHHHHH-TTCSEEEEESCCSSS---
T ss_pred CCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCE--EEEEEEeCCH-HHHHHHHHHHHh-CCCCEEEECCCCCCC---
Confidence 5688888642 22223333233445667778875 3445568988 6 4455555553 479999999998443
Q ss_pred hHHHHHHHHH
Q 027801 151 HYDAVANSAA 160 (218)
Q Consensus 151 H~e~Va~~vs 160 (218)
++|++-+++.
T Consensus 80 ~~D~t~eal~ 89 (164)
T 3pzy_A 80 PTDSTPDQTV 89 (164)
T ss_dssp TTCCHHHHHH
T ss_pred CCccHHHHHH
Confidence 4455555444
No 289
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=34.72 E-value=41 Score=28.29 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=51.6
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHH
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDA 154 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~ 154 (218)
+.|||+|.-. + ++..+ ..+..+ .|+ +++.+.+-..-|+.-.++++. ..+||.||+=|.+
T Consensus 106 ~~kIavVg~~--~-~~~~~--~~i~~l--l~~---~i~~~~~~~~ee~~~~i~~l~-~~G~~vVVG~~~~---------- 164 (225)
T 2pju_A 106 TSSIGVVTYQ--E-TIPAL--VAFQKT--FNL---RLDQRSYITEEDARGQINELK-ANGTEAVVGAGLI---------- 164 (225)
T ss_dssp TSCEEEEEES--S-CCHHH--HHHHHH--HTC---CEEEEEESSHHHHHHHHHHHH-HTTCCEEEESHHH----------
T ss_pred CCcEEEEeCc--h-hhhHH--HHHHHH--hCC---ceEEEEeCCHHHHHHHHHHHH-HCCCCEEECCHHH----------
Confidence 3599999542 2 12221 112222 245 589999999999999999985 4669998763322
Q ss_pred HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHh
Q 027801 155 VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 155 Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~R 190 (218)
.++.-++|+|-++-- +.++..||++.
T Consensus 165 ---------~~~A~~~Gl~~vlI~-s~eSI~~Ai~e 190 (225)
T 2pju_A 165 ---------TDLAEEAGMTGIFIY-SAATVRQAFSD 190 (225)
T ss_dssp ---------HHHHHHTTSEEEESS-CHHHHHHHHHH
T ss_pred ---------HHHHHHcCCcEEEEC-CHHHHHHHHHH
Confidence 345567888865533 23444555544
No 290
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=34.29 E-value=33 Score=29.60 Aligned_cols=31 Identities=10% Similarity=-0.031 Sum_probs=22.2
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCC
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVK 107 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~ 107 (218)
.||+||.-...... ...++...+.|++.|+.
T Consensus 5 ~ki~iI~n~~~~~~-~~~~~~l~~~L~~~g~~ 35 (307)
T 1u0t_A 5 RSVLLVVHTGRDEA-TETARRVEKVLGDNKIA 35 (307)
T ss_dssp CEEEEEESSSGGGG-SHHHHHHHHHHHTTTCE
T ss_pred CEEEEEEeCCCHHH-HHHHHHHHHHHHHCCCE
Confidence 47888876555443 45678888999998873
No 291
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=33.77 E-value=25 Score=26.83 Aligned_cols=90 Identities=14% Similarity=0.041 Sum_probs=48.0
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC-----cchHHHHHHHhhh---cCCccEEEEEeeeee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG-----SFEIGVVAQQLGK---SGKYTAVLCIGAVVR 146 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG-----A~ELP~aak~L~~---~~~yDaVIaLG~VIr 146 (218)
++||+|+...=-+. .=+.+..+.|++.|+ +++++..-| +.-+.+......+ ...||++|.-|--
T Consensus 2 ~~ki~il~~~g~~~---~e~~~~~~~l~~ag~---~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-- 73 (168)
T 3l18_A 2 SMKVLFLSADGFED---LELIYPLHRIKEEGH---EVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGK-- 73 (168)
T ss_dssp CCEEEEECCTTBCH---HHHHHHHHHHHHTTC---EEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBS--
T ss_pred CcEEEEEeCCCccH---HHHHHHHHHHHHCCC---EEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCc--
Confidence 57899987653222 223477788888886 366665433 2211111111111 2359999998842
Q ss_pred CCchhHHHHHHHHHHHHHHhchhcCCceE
Q 027801 147 GDTTHYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 147 GeT~H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
| . .++..+.-...+.+-..+.++||.
T Consensus 74 ~--~-~~~~~~~~l~~~l~~~~~~~k~i~ 99 (168)
T 3l18_A 74 A--P-EIVRLNEKAVMITRRMFEDDKPVA 99 (168)
T ss_dssp H--H-HHHTTCHHHHHHHHHHHHTTCCEE
T ss_pred C--H-HHhccCHHHHHHHHHHHHCCCEEE
Confidence 2 1 222233334444455556788875
No 292
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=33.74 E-value=1e+02 Score=24.08 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=48.6
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc--c--------hHHHHHHHhhhcCCccEEEEEeeee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS--F--------EIGVVAQQLGKSGKYTAVLCIGAVV 145 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA--~--------ELP~aak~L~~~~~yDaVIaLG~VI 145 (218)
.||+|+...=.+. .=+.+..+.|.+.|+ +++++...|- . .-............||++|..|--
T Consensus 4 ~~v~ill~~g~~~---~e~~~~~~~l~~ag~---~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~- 76 (197)
T 2rk3_A 4 KRALVILAKGAEE---METVIPVDVMRRAGI---KVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN- 76 (197)
T ss_dssp CEEEEEECTTCCH---HHHHHHHHHHHHTTC---EEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCH-
T ss_pred CEEEEEECCCCcH---HHHHHHHHHHHHCCC---EEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCc-
Confidence 5899988642222 223467788888886 4666665432 1 100111121133689999988842
Q ss_pred eCCchhHHHHHHHHHHHHHHhchhcCCceEE
Q 027801 146 RGDTTHYDAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 146 rGeT~H~e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
....++-.+.-...+.+-..+.++||..
T Consensus 77 ---~~~~~l~~~~~~~~~l~~~~~~gk~i~a 104 (197)
T 2rk3_A 77 ---LGAQNLSESAAVKEILKEQENRKGLIAT 104 (197)
T ss_dssp ---HHHHHHHHCHHHHHHHHHHHHTTCEEEE
T ss_pred ---hhHHHhhhCHHHHHHHHHHHHcCCEEEE
Confidence 1223334344444444445566777653
No 293
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=33.69 E-value=63 Score=27.86 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=40.4
Q ss_pred CcchHHHHH---HHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 118 GSFEIGVVA---QQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 118 GA~ELP~aa---k~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
|..+.+... +.++ ..+.||++++|.- ||..+... =-.++.+...+.. ...+||+.|+-+ ++.+++++.+
T Consensus 16 g~iD~~~l~~lv~~li-~~Gv~gi~v~Gtt--GE~~~Ls~~Er~~v~~~~~~~~-~grvpviaGvg~-~~t~~ai~la 88 (297)
T 2rfg_A 16 GQVDEKALAGLVDWQI-KHGAHGLVPVGTT--GESPTLTEEEHKRVVALVAEQA-QGRVPVIAGAGS-NNPVEAVRYA 88 (297)
T ss_dssp TEECHHHHHHHHHHHH-HTTCSEEECSSGG--GTGGGSCHHHHHHHHHHHHHHH-TTSSCBEEECCC-SSHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH-HcCCCEEEECccc--cchhhCCHHHHHHHHHHHHHHh-CCCCeEEEccCC-CCHHHHHHHH
Confidence 556655443 3343 3679999999986 77765311 0112222222322 347999999966 5666666654
No 294
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=33.48 E-value=85 Score=28.38 Aligned_cols=69 Identities=10% Similarity=0.112 Sum_probs=40.0
Q ss_pred CcchHHHHH---HHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 118 GSFEIGVVA---QQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 118 GA~ELP~aa---k~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
|..+..... +.++ ..+.||++++|.- ||...... =-.++.+...+. ....+||+.|+-. ++.+++++.+
T Consensus 75 g~ID~~al~~lv~~li-~~Gv~Gl~v~GTT--GE~~~Ls~eEr~~vi~~~ve~-~~grvpViaGvg~-~st~eai~la 147 (360)
T 4dpp_A 75 GRFDLEAYDDLVNIQI-QNGAEGVIVGGTT--GEGQLMSWDEHIMLIGHTVNC-FGGSIKVIGNTGS-NSTREAIHAT 147 (360)
T ss_dssp SSBCHHHHHHHHHHHH-HTTCCEEEESSTT--TTGGGSCHHHHHHHHHHHHHH-HTTTSEEEEECCC-SSHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH-HcCCCEEEecccc--cChhhCCHHHHHHHHHHHHHH-hCCCCeEEEecCC-CCHHHHHHHH
Confidence 555555432 3333 4689999999986 87654311 011222222222 2357999999854 6777776664
No 295
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=33.46 E-value=43 Score=29.79 Aligned_cols=54 Identities=19% Similarity=0.104 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHH
Q 027801 90 TKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVA 156 (218)
Q Consensus 90 t~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va 156 (218)
+..++.-+.+.|+..|++ ++..|| |-=-.+..|++.+..|+|+ -|+.+-+.+++
T Consensus 133 t~~q~~~~~~lL~~~gip-----~i~ap~--EADd~ia~La~~g~v~~i~------s~D~D~l~~~~ 186 (341)
T 3q8k_A 133 TKQHNDECKHLLSLMGIP-----YLDAPS--EAEASCAALVKAGKVYAAA------TEDMDCLTFGS 186 (341)
T ss_dssp CHHHHHHHHHHHHHHTCC-----EEECSS--CHHHHHHHHHHTTSSSEEE------CSCTHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCC-----EEECCc--cHHHHHHHHHhcCCeEEEE------cCCccccccCC
Confidence 357888999999999975 888998 9888888888877666543 35555555554
No 296
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=33.12 E-value=39 Score=27.43 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=43.5
Q ss_pred CeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHH
Q 027801 110 NIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALN 189 (218)
Q Consensus 110 ~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~ 189 (218)
+++.+.+-...|+.-+++++. ..+||.||+=+.+ .++.-++|+|-++---..++..||++
T Consensus 119 ~i~~~~~~~~~e~~~~i~~l~-~~G~~vvVG~~~~-------------------~~~A~~~Gl~~vli~sg~eSI~~Ai~ 178 (196)
T 2q5c_A 119 KIKEFLFSSEDEITTLISKVK-TENIKIVVSGKTV-------------------TDEAIKQGLYGETINSGEESLRRAIE 178 (196)
T ss_dssp EEEEEEECSGGGHHHHHHHHH-HTTCCEEEECHHH-------------------HHHHHHTTCEEEECCCCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHH-HCCCeEEECCHHH-------------------HHHHHHcCCcEEEEecCHHHHHHHHH
Confidence 589999999999999999985 5779998763322 34556788886653333355667765
Q ss_pred hh
Q 027801 190 RA 191 (218)
Q Consensus 190 Ra 191 (218)
.|
T Consensus 179 eA 180 (196)
T 2q5c_A 179 EA 180 (196)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 297
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=32.93 E-value=1.5e+02 Score=24.59 Aligned_cols=91 Identities=11% Similarity=0.090 Sum_probs=51.5
Q ss_pred CCCEEEEEEcccCH--HH-HHHHHHHHHHHHHHC--CCCCCCeEEEEeCCcchHH---HHHHHhhhcCCccEEEEEeeee
Q 027801 74 EGLRFALVVARFNE--LV-TKLLLEGALETFKKY--SVKEENIDVVWVPGSFEIG---VVAQQLGKSGKYTAVLCIGAVV 145 (218)
Q Consensus 74 ~~~RIaIV~Srfn~--~I-t~~Ll~gA~~~L~~~--Gv~~e~I~vv~VPGA~ELP---~aak~L~~~~~yDaVIaLG~VI 145 (218)
+..|||++...=.. .+ ...+++++...+++. |+.-..++++..-...+-. -++++|++..+.|+||. ..
T Consensus 3 ~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG--~~- 79 (375)
T 3i09_A 3 DSVKIGFITDMSGLYADIDGQGGLEAIKMAVADFGGKVNGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVG--GT- 79 (375)
T ss_dssp SSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTSEETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEE--CS-
T ss_pred CCeEEEEEeCCCcccccccCHHHHHHHHHHHHHhCCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEEC--CC-
Confidence 56799999874211 12 334555555555554 2333346666554444322 34566776678888863 32
Q ss_pred eCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 146 RGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 146 rGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
+...+..+.++.-+.++|++.-
T Consensus 80 ----------~s~~~~a~~~~~~~~~ip~i~~ 101 (375)
T 3i09_A 80 ----------NSATALSMNQVAAEKKKVYINI 101 (375)
T ss_dssp ----------CHHHHHHHHHHHHHHTCEEEEC
T ss_pred ----------CcHHHHHHHHHHHHcCceEEEe
Confidence 1223445566666789998875
No 298
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=32.75 E-value=63 Score=28.12 Aligned_cols=68 Identities=9% Similarity=0.082 Sum_probs=39.6
Q ss_pred CcchHHHHH---HHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 118 GSFEIGVVA---QQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 118 GA~ELP~aa---k~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
|..+.+... +.++ ..+.||++++|.- ||...... =-.++.+...+.. ...+||+.|+= . +.+++++++
T Consensus 28 g~iD~~~l~~lv~~li-~~Gv~Gl~v~GtT--GE~~~Ls~eEr~~v~~~~v~~~-~grvpViaGvg-~-~t~~ai~la 99 (316)
T 3e96_A 28 GSIDWHHYKETVDRIV-DNGIDVIVPCGNT--SEFYALSLEEAKEEVRRTVEYV-HGRALVVAGIG-Y-ATSTAIELG 99 (316)
T ss_dssp CCBCHHHHHHHHHHHH-TTTCCEECTTSGG--GTGGGSCHHHHHHHHHHHHHHH-TTSSEEEEEEC-S-SHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-HcCCCEEEeCccc--cCcccCCHHHHHHHHHHHHHHh-CCCCcEEEEeC-c-CHHHHHHHH
Confidence 455555433 3343 4789999999986 77554311 0112222222222 24799999994 4 888887775
No 299
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=32.60 E-value=75 Score=28.14 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=36.0
Q ss_pred HHHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 126 AQQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 126 ak~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
++.+++ .+.||++++|.- ||..+... =-.++.+...+. ....+||+.|+-. ++.+++++.+
T Consensus 58 v~~li~-~Gv~Gl~v~GtT--GE~~~Ls~eEr~~vi~~~ve~-~~grvpViaGvg~-~st~eai~la 119 (343)
T 2v9d_A 58 IDDLIK-AGVDGLFFLGSG--GEFSQLGAEERKAIARFAIDH-VDRRVPVLIGTGG-TNARETIELS 119 (343)
T ss_dssp HHHHHH-TTCSCEEESSTT--TTGGGSCHHHHHHHHHHHHHH-HTTSSCEEEECCS-SCHHHHHHHH
T ss_pred HHHHHH-cCCCEEEeCccc--cChhhCCHHHHHHHHHHHHHH-hCCCCcEEEecCC-CCHHHHHHHH
Confidence 344443 579999999986 77665311 011222222332 2347999999876 5666666654
No 300
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=32.49 E-value=14 Score=37.06 Aligned_cols=93 Identities=14% Similarity=0.020 Sum_probs=55.9
Q ss_pred CCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC-----cchHHHHHHHhhh---cCCccEEEEEee
Q 027801 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG-----SFEIGVVAQQLGK---SGKYTAVLCIGA 143 (218)
Q Consensus 72 ~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG-----A~ELP~aak~L~~---~~~yDaVIaLG~ 143 (218)
...+.||+|+.+.--+++ -+...++.|++.|+. ++++..-+ +.-+++.+...+. ...||+||..|-
T Consensus 597 ti~grKVaILlaDGfEe~---El~~pvdaLr~AG~~---V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG 670 (753)
T 3ttv_A 597 DVKGRVVAILLNDEVRSA---DLLAILKALKAKGVH---AKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG 670 (753)
T ss_dssp CCTTCEEEEECCTTCCHH---HHHHHHHHHHHHTCE---EEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS
T ss_pred CCCCCEEEEEecCCCCHH---HHHHHHHHHHHCCCE---EEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC
Confidence 356789999998866664 356788999999973 56654322 2222222222222 235999999886
Q ss_pred eeeCCchhHHHHHHHHHHHHHHhchhcCCceEE
Q 027801 144 VVRGDTTHYDAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 144 VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
| +.+ +..+.-...+.+=..+.++||+.
T Consensus 671 ---g-~~~--Lr~d~~vl~~Vre~~~~gKpIAA 697 (753)
T 3ttv_A 671 ---N-IAD--IADNGDANYYLMEAYKHLKPIAL 697 (753)
T ss_dssp ---C-GGG--TTTCHHHHHHHHHHHHTTCCEEE
T ss_pred ---C-hHH--hhhCHHHHHHHHHHHhcCCeEEE
Confidence 2 222 23344455555556667888764
No 301
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=32.22 E-value=71 Score=27.89 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=35.2
Q ss_pred HHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 127 QQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 127 k~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
+.++ ..+.||++++|.- ||...... =-.++.+...+.. ...+||+.|+-+ ++.+++++++
T Consensus 50 ~~li-~~Gv~Gl~v~GtT--GE~~~Ls~~Er~~v~~~~v~~~-~grvpViaGvg~-~st~~ai~la 110 (315)
T 3si9_A 50 EWQI-TQGINGVSPVGTT--GESPTLTHEEHKRIIELCVEQV-AKRVPVVAGAGS-NSTSEAVELA 110 (315)
T ss_dssp HHHH-HTTCSEEECSSTT--TTGGGSCHHHHHHHHHHHHHHH-TTSSCBEEECCC-SSHHHHHHHH
T ss_pred HHHH-HcCCCEEEeCccc--cCccccCHHHHHHHHHHHHHHh-CCCCcEEEeCCC-CCHHHHHHHH
Confidence 3444 3679999999986 77665411 0012222222222 247999999866 6666666654
No 302
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=32.11 E-value=48 Score=28.43 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=40.5
Q ss_pred CcchHHHH---HHHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 118 GSFEIGVV---AQQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 118 GA~ELP~a---ak~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
|..+.+.. ++.++ ..+.||++++|.- ||..+... =-.++.+...+.. ...+||+.|+-. ++.+++++.+
T Consensus 16 g~iD~~~l~~lv~~li-~~Gv~gl~~~Gtt--GE~~~Ls~~Er~~v~~~~~~~~-~gr~pviaGvg~-~~t~~ai~la 88 (292)
T 2vc6_A 16 DRIDEVALHDLVEWQI-EEGSFGLVPCGTT--GESPTLSKSEHEQVVEITIKTA-NGRVPVIAGAGS-NSTAEAIAFV 88 (292)
T ss_dssp TEECHHHHHHHHHHHH-HTTCSEEETTSGG--GTGGGSCHHHHHHHHHHHHHHH-TTSSCBEEECCC-SSHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH-HcCCCEEEECccc--cChhhCCHHHHHHHHHHHHHHh-CCCCcEEEecCC-ccHHHHHHHH
Confidence 55565543 33344 3679999999986 77765421 0112233333322 247999999966 5556666554
No 303
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=32.00 E-value=80 Score=27.77 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=35.7
Q ss_pred HHHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 126 AQQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 126 ak~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
++.+++ .+.||++++|.- ||..+... =-.++.+...+. ....+||+.|+-+ ++.+++++.+
T Consensus 61 v~~li~-~Gv~Gl~v~GtT--GE~~~Ls~eEr~~vi~~~ve~-~~grvpViaGvg~-~st~eai~la 122 (332)
T 2r8w_A 61 IARLDA-AEVDSVGILGST--GIYMYLTREERRRAIEAAATI-LRGRRTLMAGIGA-LRTDEAVALA 122 (332)
T ss_dssp HHHHHH-HTCSEEEESSTT--TTGGGSCHHHHHHHHHHHHHH-HTTSSEEEEEECC-SSHHHHHHHH
T ss_pred HHHHHH-cCCCEEEECccc--cChhhCCHHHHHHHHHHHHHH-hCCCCcEEEecCC-CCHHHHHHHH
Confidence 344443 579999999986 77765311 011222222232 2347999999876 5666666554
No 304
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=31.98 E-value=46 Score=29.92 Aligned_cols=55 Identities=18% Similarity=0.075 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHH
Q 027801 90 TKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVAN 157 (218)
Q Consensus 90 t~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~ 157 (218)
+..|+..+.+.|+..|++ ++..|| |-=..+..|++.+..|+|+. ++++-+.|++.
T Consensus 142 t~~~~~~i~~lL~~~GIp-----~i~apg--EADaqiA~La~~g~~~~I~S------~D~D~l~fg~~ 196 (363)
T 3ory_A 142 TEEMVRDAKSLLDAMGIP-----WVQAPA--EGEAQAAYIVKKGDAYASAS------QDYDSLLFGSP 196 (363)
T ss_dssp CHHHHHHHHHHHHHHTCC-----EEECSS--CHHHHHHHHHHTTSCSEEEC------SSSHHHHTTCS
T ss_pred CHHHHHHHHHHHHHCCCC-----EEEeCc--cHHHHHHHHHHCCCeEEEEC------CCcCccccCCC
Confidence 345788899999999875 889999 65555677777777777553 55555555544
No 305
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=31.93 E-value=40 Score=28.07 Aligned_cols=37 Identities=11% Similarity=-0.075 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhchhc--CCceEEEEcCCCCHHHHHHh
Q 027801 153 DAVANSAASGVLSAGVNS--GVPCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~--~vPVifGVLT~~n~eQA~~R 190 (218)
.|+||.+.+..+...-+. ..+.+|-=+- .-.+|+.++
T Consensus 139 ~ylCN~i~Y~sL~~~~~~~~~~~~gFIHVP-~~~~~~~~~ 177 (208)
T 1x10_A 139 LYLSNYVMYLSLHHSATKGYPKMSGFIHVP-YIPEQIIDK 177 (208)
T ss_dssp SSHHHHHHHHHHHHHHHHSCCSEEEEEEEC-BCGGGTHHH
T ss_pred cchhhHHHHHHHHHHHhccCCCceEEEEcC-CCchhhhcc
Confidence 489999999999887553 2266665443 445677665
No 306
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=31.23 E-value=2.2e+02 Score=23.50 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=52.9
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc---h--------HHHHHHH-hhhcCCccEEEEEe
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF---E--------IGVVAQQ-LGKSGKYTAVLCIG 142 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~---E--------LP~aak~-L~~~~~yDaVIaLG 142 (218)
..||+|+.. |-.++++.+ .+.|++.|++ +....-.|-. | +--++++ +....+.|+|| ||
T Consensus 117 ~~rvglltp-y~~~~~~~~----~~~l~~~Gie---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaiv-L~ 187 (240)
T 3ixl_A 117 VRRVALATA-YIDDVNERL----AAFLAEESLV---PTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGIL-LS 187 (240)
T ss_dssp CSEEEEEES-SCHHHHHHH----HHHHHHTTCE---EEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEE-EE
T ss_pred CCEEEEEeC-ChHHHHHHH----HHHHHHCCCE---EeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEE-Ee
Confidence 469999965 666655444 5667777873 2222222211 1 2223455 32556788876 67
Q ss_pred eeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhCCC
Q 027801 143 AVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGK 194 (218)
Q Consensus 143 ~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag~k 194 (218)
|- +-+-++. +-++.-+.++||+...-. ..-+++.++|.+
T Consensus 188 CT---~l~~l~~--------i~~le~~lg~PVids~~a--~~w~~lr~~g~~ 226 (240)
T 3ixl_A 188 SG---GLLTLDA--------IPEVERRLGVPVVSSSPA--GFWDAVRLAGGG 226 (240)
T ss_dssp CT---TSCCTTH--------HHHHHHHHSSCEEEHHHH--HHHHHHHHTTSC
T ss_pred CC---CCchhhh--------HHHHHHHhCCCEEeHHHH--HHHHHHHHcCCC
Confidence 84 3333321 223445668999654322 446667777654
No 307
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=31.15 E-value=97 Score=24.26 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=38.3
Q ss_pred CEEEEEEcc--cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchh-H
Q 027801 76 LRFALVVAR--FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTH-Y 152 (218)
Q Consensus 76 ~RIaIV~Sr--fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H-~ 152 (218)
+||+||.-. ....+++ .|++.|....++++..|+-. | + ..+|++|.-|- |.... .
T Consensus 1 m~I~iid~~~g~~~s~~~--------~l~~~G~~~~~~~~~~~~~~-~---------~-~~~dglilpG~---g~~~~~~ 58 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNLYR--------GVKRASENFEDVSIELVESP-R---------N-DLYDLLFIPGV---GHFGEGM 58 (201)
T ss_dssp CEEEEECCSSSCCHHHHH--------HHHHHSTTBSSCEEEEECSC-C---------S-SCCSEEEECCC---SCSHHHH
T ss_pred CEEEEEecCCchHHHHHH--------HHHHcCCCCCceEEEEECCC-c---------c-cCCCEEEECCC---CcHHHHH
Confidence 488998733 3355553 34445621011334445431 1 3 68999999883 44221 1
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
+.+.+.-...+.+-.++.++||. ||
T Consensus 59 ~~l~~~~~~~~i~~~~~~~~Pil-GI 83 (201)
T 1gpw_B 59 RRLRENDLIDFVRKHVEDERYVV-GV 83 (201)
T ss_dssp HHHHHTTCHHHHHHHHHTTCEEE-EE
T ss_pred HHHHhhCHHHHHHHHHHcCCeEE-EE
Confidence 22211012233333446789964 54
No 308
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=31.14 E-value=1.1e+02 Score=24.26 Aligned_cols=89 Identities=9% Similarity=0.058 Sum_probs=48.9
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc----c----hHHH----HHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS----F----EIGV----VAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA----~----ELP~----aak~L~~~~~yDaVIaLG~ 143 (218)
.||+|+...=.+. .=+.+..+.|.+.|+ +++++...|. . -+.+ ....+ ....||++|..|-
T Consensus 3 ~kV~ill~~g~~~---~e~~~~~~~l~~ag~---~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~-~~~~~D~livpGG 75 (205)
T 2ab0_A 3 ASALVCLAPGSEE---TEAVTTIDLLVRGGI---KVTTASVASDGNLAITCSRGVKLLADAPLVEV-ADGEYDVIVLPGG 75 (205)
T ss_dssp CEEEEEECTTCCH---HHHHHHHHHHHHTTC---EEEEEECSSTTCCEEECTTSCEEECSEEHHHH-TTSCCSEEEECCC
T ss_pred cEEEEEEcCCCcH---HHHHHHHHHHHHCCC---EEEEEeCCCCCCceeecCCCeEEecCCCHHHC-CcccCCEEEECCC
Confidence 5899988753322 123467788988886 4777765542 1 0111 11111 2357999988874
Q ss_pred eeeCCchhHHHHHHHHHHHHHHhchhcCCceE
Q 027801 144 VVRGDTTHYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 144 VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
- -.-.++-.+.-...+.+-..+.++||.
T Consensus 76 ~----~~~~~l~~~~~l~~~l~~~~~~gk~i~ 103 (205)
T 2ab0_A 76 I----KGAECFRDSTLLVETVKQFHRSGRIVA 103 (205)
T ss_dssp H----HHHHHHHHCHHHHHHHHHHHHTTCEEE
T ss_pred c----ccHHHhccCHHHHHHHHHHHHcCCEEE
Confidence 2 112333334444444455556777765
No 309
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=31.00 E-value=84 Score=25.46 Aligned_cols=38 Identities=11% Similarity=-0.079 Sum_probs=27.5
Q ss_pred CEEEEEEcccC-HHHHHHHHHHHHHHHHHC-CCCCCCeEEEEe
Q 027801 76 LRFALVVARFN-ELVTKLLLEGALETFKKY-SVKEENIDVVWV 116 (218)
Q Consensus 76 ~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~-Gv~~e~I~vv~V 116 (218)
+||+||.+.-+ .-.+..|++.+.+.|++. |.+ ++++.+
T Consensus 2 mkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~---v~~~dl 41 (242)
T 1sqs_A 2 NKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVD---ISFRTP 41 (242)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCE---EEEECT
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCe---EEEEEc
Confidence 37888887755 356888888888888877 763 566553
No 310
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=30.86 E-value=1e+02 Score=27.79 Aligned_cols=64 Identities=11% Similarity=0.029 Sum_probs=41.6
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe---CCcchHHHHHHHhhhc-CCccEEEEEe
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV---PGSFEIGVVAQQLGKS-GKYTAVLCIG 142 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V---PGA~ELP~aak~L~~~-~~yDaVIaLG 142 (218)
-.+|+||.+ +.+..+..++...+++++.|+.- ..+..+ ++.-+.--.++++.+. .+.+.||+.|
T Consensus 197 w~~V~li~~--dd~~G~~~~~~~~~~~~~~Gi~v--~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~ 264 (496)
T 3ks9_A 197 WTYVSAVHT--EGNYGESGMDAFKELAAQEGLSI--AHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFC 264 (496)
T ss_dssp CCEEEEEEE--SSHHHHHHHHHHHHHHHHTTCEE--EEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEEC
T ss_pred CcEEEEEEe--ccHHHHHHHHHHHHHHHHcCceE--EEEEEECCCCCHHHHHHHHHHHHhccCceEEEEEec
Confidence 468999986 56677788889999999999741 112234 4555666666776432 3455555544
No 311
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=30.82 E-value=62 Score=28.19 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=35.2
Q ss_pred HHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 127 QQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 127 k~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
+.+++ .+.||++++|.- ||..+... =-.++.+...+. ....+||+.|+-+ +.+++++.+
T Consensus 40 ~~li~-~Gv~gl~v~GtT--GE~~~Ls~eEr~~vi~~~~~~-~~grvpViaGvg~--st~~ai~la 99 (314)
T 3d0c_A 40 EFLLQ-NGIEVIVPNGNT--GEFYALTIEEAKQVATRVTEL-VNGRATVVAGIGY--SVDTAIELG 99 (314)
T ss_dssp HHHHH-TTCSEECTTSGG--GTGGGSCHHHHHHHHHHHHHH-HTTSSEEEEEECS--SHHHHHHHH
T ss_pred HHHHH-cCCCEEEECccc--CChhhCCHHHHHHHHHHHHHH-hCCCCeEEecCCc--CHHHHHHHH
Confidence 34443 679999999986 77665311 011222222332 2347999999977 666676654
No 312
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=30.63 E-value=31 Score=30.58 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=43.3
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCC-----cchHHHHHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPG-----SFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPG-----A~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
.|+.||....- ..+.+...+.|++.+ +.++ +| .+|.=.-+...++..++|.||++| |++.
T Consensus 35 ~r~liVtd~~~----~~~~~~v~~~L~~~~-----~~v~--~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG----GGs~ 99 (353)
T 3hl0_A 35 SRALVLSTPQQ----KGDAEALASRLGRLA-----AGVF--SEAAMHTPVEVTKTAVEAYRAAGADCVVSLG----GGST 99 (353)
T ss_dssp CCEEEECCGGG----HHHHHHHHHHHGGGE-----EEEE--CCCCTTCBHHHHHHHHHHHHHTTCSEEEEEE----SHHH
T ss_pred CEEEEEecCch----hhHHHHHHHHHhhCC-----cEEe--cCcCCCCcHHHHHHHHHHHhccCCCEEEEeC----CcHH
Confidence 57888887653 245666677777643 3333 34 223222222334667899999999 5554
Q ss_pred hH--HHHHHHHHHHHHHhchhcCCceEE
Q 027801 151 HY--DAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 151 H~--e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
.+ ++|+. ..++|++.
T Consensus 100 iD~aK~iA~-----------~~~~p~i~ 116 (353)
T 3hl0_A 100 TGLGKAIAL-----------RTDAAQIV 116 (353)
T ss_dssp HHHHHHHHH-----------HHCCEEEE
T ss_pred HHHHHHHHh-----------ccCCCEEE
Confidence 44 33332 35888875
No 313
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=30.48 E-value=1.4e+02 Score=25.90 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=37.7
Q ss_pred HHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 127 QQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 127 k~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
+.++ ..+.||++++|.- ||...... =-.++.+...+.. ..+||+.|+-. ++.+++++.+
T Consensus 36 ~~li-~~Gv~Gl~v~GtT--GE~~~Lt~~Er~~v~~~~v~~~--grvpViaGvg~-~~t~~ai~la 95 (313)
T 3dz1_A 36 DFYA-EVGCEGVTVLGIL--GEAPKLDAAEAEAVATRFIKRA--KSMQVIVGVSA-PGFAAMRRLA 95 (313)
T ss_dssp HHHH-HTTCSEEEESTGG--GTGGGSCHHHHHHHHHHHHHHC--TTSEEEEECCC-SSHHHHHHHH
T ss_pred HHHH-HCCCCEEEeCccC--cChhhCCHHHHHHHHHHHHHHc--CCCcEEEecCC-CCHHHHHHHH
Confidence 4444 3679999999986 77655421 1123444444444 48999999865 6777776665
No 314
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=30.31 E-value=83 Score=27.42 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=35.8
Q ss_pred HHHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 126 AQQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 126 ak~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
++.++ ..+.||++++|.- ||...... =-.++.+...+.. ...+||+.|+-+ ++.+++++.+
T Consensus 51 v~~li-~~Gv~Gi~v~GtT--GE~~~Ls~~Er~~v~~~~v~~~-~grvpViaGvg~-~~t~~ai~la 112 (315)
T 3na8_A 51 IERLI-DGGVHAIAPLGST--GEGAYLSDPEWDEVVDFTLKTV-AHRVPTIVSVSD-LTTAKTVRRA 112 (315)
T ss_dssp HHHHH-HTTCSEEECSSGG--GTGGGSCHHHHHHHHHHHHHHH-TTSSCBEEECCC-SSHHHHHHHH
T ss_pred HHHHH-HcCCCEEEECccc--cChhhCCHHHHHHHHHHHHHHh-CCCCcEEEecCC-CCHHHHHHHH
Confidence 34444 3679999999986 77654311 0112222222222 347999999765 5666676654
No 315
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=30.14 E-value=89 Score=29.02 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHH
Q 027801 92 LLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (218)
Q Consensus 92 ~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak 127 (218)
...+.-.+.|+++||. +++-+||...+|+.-.
T Consensus 12 ~~a~~lv~~L~~~GV~----~vFg~PG~~~~~l~da 43 (578)
T 3lq1_A 12 DYLAAFIEELVQAGVK----EAIISPGSRSTPLALM 43 (578)
T ss_dssp HHHHHHHHHHHHTTCC----EEEECCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCC----EEEECCCCccHHHHHH
Confidence 3455667889999997 7999999999998743
No 316
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=29.70 E-value=71 Score=29.51 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=24.2
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHH
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak 127 (218)
+.-.+.|+++||. .++-+||...+|+.-.
T Consensus 7 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a 35 (568)
T 2wvg_A 7 TYLAERLVQIGLK----HHFAVAGDYNLVLLDN 35 (568)
T ss_dssp HHHHHHHHHTTCS----EEEECCCTTTHHHHHH
T ss_pred HHHHHHHHHcCCC----EEEeCCCCccHHHHHH
Confidence 4457889999997 7999999999998754
No 317
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=29.66 E-value=34 Score=28.69 Aligned_cols=39 Identities=18% Similarity=0.025 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCC-CCHHHHHHhh
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTC-DNMDQALNRA 191 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~-~n~eQA~~Ra 191 (218)
-|+||.+.++.+...-+.+.|+-.|.+=+ .-.||+.++-
T Consensus 140 ~yvCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~~q~~~~~ 179 (215)
T 3lac_A 140 TFVCNHLFYGLMHELEKHDTKMKGGFIHIPFLPEQASNYP 179 (215)
T ss_dssp SSHHHHHHHHHHHHHGGGTTSSEEEEEEECCCHHHHTTST
T ss_pred ccccHHHHHHHHHHHHhcCCCceEEEEEeCCChHHhccCC
Confidence 68999999998887766554544444433 5668887553
No 318
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=29.63 E-value=88 Score=26.72 Aligned_cols=69 Identities=12% Similarity=0.258 Sum_probs=39.1
Q ss_pred CcchHHHH---HHHhhhcCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 118 GSFEIGVV---AQQLGKSGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 118 GA~ELP~a---ak~L~~~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
|..+.... ++.++ ..+.||++++|.- ||..+... =-.++.+...+.. ...+||+.|+-+ ++.+++++.+
T Consensus 17 g~iD~~~l~~lv~~li-~~Gv~gl~~~Gtt--GE~~~Ls~~Er~~v~~~~~~~~-~gr~pviaGvg~-~~t~~ai~la 89 (291)
T 3tak_A 17 GGVDWKSLEKLVEWHI-EQGTNSIVAVGTT--GEASTLSMEEHTQVIKEIIRVA-NKRIPIIAGTGA-NSTREAIELT 89 (291)
T ss_dssp SCBCHHHHHHHHHHHH-HHTCCEEEESSTT--TTGGGSCHHHHHHHHHHHHHHH-TTSSCEEEECCC-SSHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH-HCCCCEEEECccc--cccccCCHHHHHHHHHHHHHHh-CCCCeEEEeCCC-CCHHHHHHHH
Confidence 44444433 33343 3679999999986 87554311 0012222222222 246999999766 5667776654
No 319
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=29.60 E-value=2.2e+02 Score=22.99 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=48.2
Q ss_pred ccCCCCCCCEEEEEE----cccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc-hHHHHHHHhhhcCCccEEEEEe
Q 027801 68 GFLTKNEGLRFALVV----ARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF-EIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 68 ~~~~~~~~~RIaIV~----Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~-ELP~aak~L~~~~~yDaVIaLG 142 (218)
|.++-...+|+++-. ..|.....+.=++.+++.+++.|++ .|++. .+..+ +-+-.++++++..+.. +.+++
T Consensus 13 ~~~~~~~~mklg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~--~vEl~-~~~~~~~~~~~~~~~l~~~gl~-~~~~~ 88 (290)
T 2zvr_A 13 GLVPRGSHMKLSLVISTSDAAFDALAFKGDLRKGMELAKRVGYQ--AVEIA-VRDPSIVDWNEVKILSEELNLP-ICAIG 88 (290)
T ss_dssp --------CEEEEEECCCC-------CHHHHHHHHHHHHHHTCS--EEEEE-CSCGGGSCHHHHHHHHHHHTCC-EEEEE
T ss_pred CcCcCCCCceeEEecccchhhccccccccCHHHHHHHHHHhCCC--EEEEc-CCCcchhhHHHHHHHHHHcCCe-EEEEe
Confidence 334334567999998 5565433233456778888888985 45554 44322 2223345555544444 22343
Q ss_pred e---------eeeCCchhHHHHHHHHHHHHHHhchhcCCceEE
Q 027801 143 A---------VVRGDTTHYDAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 143 ~---------VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
+ -+-+..+...--.-+..+..+++.-+.|.|.+.
T Consensus 89 ~~~p~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~ 131 (290)
T 2zvr_A 89 TGQAYLADGLSLTHPNDEIRKKAIERVVKHTEVAGMFGALVII 131 (290)
T ss_dssp CTHHHHTTCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred ccCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3 111111110011223456677778888999887
No 320
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=29.59 E-value=29 Score=29.62 Aligned_cols=38 Identities=18% Similarity=0.099 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCC-CCHHHHHHh
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTC-DNMDQALNR 190 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~-~n~eQA~~R 190 (218)
-||||.+..+.+...-+.+.|+-.|.+=+ .-.+|+.++
T Consensus 162 tYvCN~iyY~sL~~~~~~~~~~~~gFIHVP~l~eq~~~~ 200 (228)
T 4hps_A 162 TFVCNHVMYGLLHYLAQNTPSVRGGFIHVPYLPEQAVKD 200 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHCTTSEEEEEEECCCGGGGCSS
T ss_pred cchhHHHHHHHHHHHHhcCCCceEEEEEcCCchHhhccC
Confidence 68899999998887655554444444433 456777654
No 321
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=29.59 E-value=1.7e+02 Score=21.65 Aligned_cols=75 Identities=15% Similarity=0.069 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhc
Q 027801 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNS 170 (218)
Q Consensus 91 ~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~ 170 (218)
+..++.+.+.+.+.|+. ++...+.|. ..-.+-..++..++|-| ++|.- |.+.--+++-..++..+.+- .
T Consensus 86 ~~~l~~~~~~~~~~g~~---~~~~v~~G~--~~~~I~~~a~~~~~DLI-VmG~~--g~~~~~~~~~Gsva~~vl~~---a 154 (175)
T 2gm3_A 86 LHLLEFFVNKCHEIGVG---CEAWIKTGD--PKDVICQEVKRVRPDFL-VVGSR--GLGRFQKVFVGTVSAFCVKH---A 154 (175)
T ss_dssp HHHHHHHHHHHHHHTCE---EEEEEEESC--HHHHHHHHHHHHCCSEE-EEEEC--CCC--------CHHHHHHHH---C
T ss_pred HHHHHHHHHHHHHCCCc---eEEEEecCC--HHHHHHHHHHHhCCCEE-EEeCC--CCChhhhhhcCchHHHHHhC---C
Confidence 45677777778888874 555555673 33344455566678854 56764 55554556666777766664 3
Q ss_pred CCceEE
Q 027801 171 GVPCIF 176 (218)
Q Consensus 171 ~vPVif 176 (218)
.+||..
T Consensus 155 ~~pVlv 160 (175)
T 2gm3_A 155 ECPVMT 160 (175)
T ss_dssp SSCEEE
T ss_pred CCCEEE
Confidence 688764
No 322
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=29.51 E-value=43 Score=28.22 Aligned_cols=37 Identities=16% Similarity=0.040 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhchhc--CCceEEEEcCCCCHHHHHHh
Q 027801 153 DAVANSAASGVLSAGVNS--GVPCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~--~vPVifGVLT~~n~eQA~~R 190 (218)
.|+||.+.+..+...-+. +++.+|-=+- .-.+|+.++
T Consensus 140 ~ylCN~i~Y~sL~~~~~~~~~~~~gFIHVP-~l~~~~~~~ 178 (220)
T 1a2z_A 140 TYLCNYVMFKTLHFSKIEGYPLKAGFIHVP-YTPDQVVNK 178 (220)
T ss_dssp SSHHHHHHHHHHHHHHHHCCCSEEEEEEEC-CCGGGGTTC
T ss_pred cchhhHHHHHHHHHHHhccCCceeEEEEeC-CChhhhhhh
Confidence 489999999999887664 6666665443 445666543
No 323
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*
Probab=29.40 E-value=1.9e+02 Score=26.68 Aligned_cols=92 Identities=20% Similarity=0.179 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhch
Q 027801 89 VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGV 168 (218)
Q Consensus 89 It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL 168 (218)
....|.+-..+.|+++|+++.-+.+ |+|.=+ -+.+.|.++.++|.|.- .|.|.--..|+..++ +..+.+
T Consensus 172 t~~~l~~l~~~al~~~GlP~gvv~v--v~g~~~--~~g~~L~~~p~vd~V~f-----TGS~~~g~~i~~~aa--~~~v~l 240 (486)
T 3pqa_A 172 VCIELAKIIENALKKYNVPLGVYNL--LTGAGE--VVGDEIVVNEKVNMISF-----TGSSKVGELITKKAG--FKKIAL 240 (486)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEE--CCSCTT--THHHHHHHCTTCCEEEE-----ESCHHHHHHHHHHCC--SSEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEE--EeCCch--HHHHHHHhCCCccEEEE-----ECChHHHHHHHHHcC--CCceee
Confidence 3445555566677788998655554 566321 23466777788998864 466766666766554 555555
Q ss_pred hcCCceEEEEcCCCCHHHHHHhh
Q 027801 169 NSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 169 ~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
+.|=---.-|+-.-|.++|.+++
T Consensus 241 ELGGk~p~iV~~dADl~~Aa~~i 263 (486)
T 3pqa_A 241 ELGGVNPNIVLKDADLNKAVNAL 263 (486)
T ss_dssp ECCCCEEEEECTTSCHHHHHHHH
T ss_pred ccCCcCcEEEcCCCCHHHHHHHH
Confidence 54322222244456788886664
No 324
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=29.32 E-value=1.9e+02 Score=25.49 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=36.2
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHH------HHHHHhhhc--CCccEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIG------VVAQQLGKS--GKYTAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP------~aak~L~~~--~~yDaVIaLG~ 143 (218)
+.|+.||..+.-... .++...+.|++. + +++++.+|+--+-| -+++.+.+. .+.|.||++|=
T Consensus 34 ~~k~liVtd~~v~~~---~~~~v~~~L~~~-~---~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGG 103 (368)
T 2gru_A 34 FDQYIMISDSGVPDS---IVHYAAEYFGKL-A---PVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGG 103 (368)
T ss_dssp CSEEEEEEETTSCHH---HHHHHHHHHTTT-S---CEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEES
T ss_pred CCEEEEEECCcHHHH---HHHHHHHHHHhc-c---ceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECC
Confidence 468989886654332 355556666654 4 35666677653322 222333332 35899999973
No 325
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=29.29 E-value=89 Score=27.22 Aligned_cols=56 Identities=16% Similarity=0.284 Sum_probs=33.6
Q ss_pred cCCccEEEEEeeeeeCCchhHHH-HHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 132 SGKYTAVLCIGAVVRGDTTHYDA-VANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 132 ~~~yDaVIaLG~VIrGeT~H~e~-Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
..+.||++++|.- ||..+... =-.++.+...+.. ...+||+.|+-+ ++.+++++++
T Consensus 55 ~~Gv~Gl~v~GtT--GE~~~Ls~~Er~~v~~~~v~~~-~grvpViaGvg~-~st~eai~la 111 (314)
T 3qze_A 55 QEGTNAIVAVGTT--GESATLDVEEHIQVIRRVVDQV-KGRIPVIAGTGA-NSTREAVALT 111 (314)
T ss_dssp HHTCCEEEESSGG--GTGGGCCHHHHHHHHHHHHHHH-TTSSCEEEECCC-SSHHHHHHHH
T ss_pred HcCCCEEEECccc--cChhhCCHHHHHHHHHHHHHHh-CCCCcEEEeCCC-cCHHHHHHHH
Confidence 3579999999986 77655411 0112222222222 346999999776 5666666654
No 326
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=28.47 E-value=1.5e+02 Score=21.04 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHH-hhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhc
Q 027801 89 VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQ-LGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAG 167 (218)
Q Consensus 89 It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~-L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~ls 167 (218)
-.+..++.+.+.+.+.|+. +++...+.| +..-.+-. .++..++|-|| +|.= |.+.-.+++-..++..+.+
T Consensus 66 ~~~~~l~~~~~~~~~~g~~--~~~~~~~~g--~~~~~I~~~~a~~~~~dliV-~G~~--~~~~~~~~~~Gs~~~~vl~-- 136 (146)
T 3s3t_A 66 HAKDAMRQRQQFVATTSAP--NLKTEISYG--IPKHTIEDYAKQHPEIDLIV-LGAT--GTNSPHRVAVGSTTSYVVD-- 136 (146)
T ss_dssp HHHHHHHHHHHHHTTSSCC--CCEEEEEEE--CHHHHHHHHHHHSTTCCEEE-EESC--CSSCTTTCSSCHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhcCCc--ceEEEEecC--ChHHHHHHHHHhhcCCCEEE-ECCC--CCCCcceEEEcchHHHHhc--
Confidence 3445667777777777872 355555667 34444555 66778899765 6763 4444444444555555554
Q ss_pred hhcCCceE
Q 027801 168 VNSGVPCI 175 (218)
Q Consensus 168 L~~~vPVi 175 (218)
+..+||.
T Consensus 137 -~~~~pVl 143 (146)
T 3s3t_A 137 -HAPCNVI 143 (146)
T ss_dssp -HCSSEEE
T ss_pred -cCCCCEE
Confidence 3457765
No 327
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=28.31 E-value=27 Score=29.26 Aligned_cols=64 Identities=9% Similarity=-0.038 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhc
Q 027801 89 VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAG 167 (218)
Q Consensus 89 It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~ls 167 (218)
+...+++.|.+.+++.|+. .+++++ +-...++| ...+.||.|++.+++ .|.+ ...+.+.+.++-
T Consensus 148 ~s~~~~~~a~~~~~~~~~~-~~v~~~-~~d~~~~~------~~~~~fD~V~~~~~l-----~~~~--~~~~l~~~~~~L 211 (312)
T 3vc1_A 148 LSAAQADFGNRRARELRID-DHVRSR-VCNMLDTP------FDKGAVTASWNNEST-----MYVD--LHDLFSEHSRFL 211 (312)
T ss_dssp SCHHHHHHHHHHHHHTTCT-TTEEEE-ECCTTSCC------CCTTCEEEEEEESCG-----GGSC--HHHHHHHHHHHE
T ss_pred CCHHHHHHHHHHHHHcCCC-CceEEE-ECChhcCC------CCCCCEeEEEECCch-----hhCC--HHHHHHHHHHHc
Confidence 3456788889999988875 356554 44445555 235689999987665 2333 444444444443
No 328
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=28.23 E-value=1.1e+02 Score=25.75 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=28.1
Q ss_pred CCCEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 027801 74 EGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWV 116 (218)
Q Consensus 74 ~~~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V 116 (218)
..+||+||.+.=+ .-.+..|++.+.+.+++.|++ ++++.+
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~e---ve~idL 73 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAE---VKVFDP 73 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCE---EEECCC
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCE---EEEEEh
Confidence 3468888887644 466778888888888887764 555554
No 329
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=27.87 E-value=2.2e+02 Score=26.50 Aligned_cols=121 Identities=14% Similarity=0.084 Sum_probs=77.2
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhh---cCCc-cEEEEEeeeeeCCc
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGK---SGKY-TAVLCIGAVVRGDT 149 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~---~~~y-DaVIaLG~VIrGeT 149 (218)
...+|+||.+.--+. .-.+.|.+.|+..|++ .-+.|-|+.-+|--...+++ ...+ +.|||.. |..
T Consensus 264 ~~~~V~Ii~gs~SD~---~~~~~a~~~l~~~gi~----~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~A----G~~ 332 (425)
T 2h31_A 264 SQCRVVVLMGSTSDL---GHCEKIKKACGNFGIP----CELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVA----GRS 332 (425)
T ss_dssp CCCEEEEEESCGGGH---HHHHHHHHHHHHTTCC----EEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEEC----CSS
T ss_pred CCCeEEEEecCcccH---HHHHHHHHHHHHcCCc----eEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEc----Ccc
Confidence 346899999887765 5567899999999996 45679999999988877764 3456 5666543 666
Q ss_pred hhHHHHHHHHHHHHHHhchhcCCceEEEEcC-CCCHHHHHHhh-----C--CCCCCcHHHHHHHHHHHHHHHhh
Q 027801 150 THYDAVANSAASGVLSAGVNSGVPCIFGVLT-CDNMDQALNRA-----G--GKSGNKGAEAALTAIEMASLFEH 215 (218)
Q Consensus 150 ~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT-~~n~eQA~~Ra-----g--~k~gnKG~EAA~aAleM~~L~~~ 215 (218)
.|--=|.. -.+.+|||..=.. ..+-.+|+--. | ...-+-|..||..|..|+.+...
T Consensus 333 a~Lpgvva----------~~t~~PVIgvP~~~~~~G~daLls~vqmp~g~pvatv~~~~nAa~~A~~Il~~~~~ 396 (425)
T 2h31_A 333 NGLGPVMS----------GNTAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTVLSPEGSAQFAAQIFGLSNH 396 (425)
T ss_dssp CCHHHHHH----------HHCSSCEEECCCCCTTTHHHHGGGTSSCCSSCCCEECCCHHHHHHHHHHHHHTTCH
T ss_pred cchHhHHh----------ccCCCCEEEeeCccccccHHHHHHHhcCCCCCceEEecCchHHHHHHHHHHccCCH
Confidence 66543322 2356777754332 12223332211 1 00123588999999999876543
No 330
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=27.74 E-value=94 Score=26.21 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=39.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCC------------C-------eEEEE-eCCcchHHHHHHHhhhcCC
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEE------------N-------IDVVW-VPGSFEIGVVAQQLGKSGK 134 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e------------~-------I~vv~-VPGA~ELP~aak~L~~~~~ 134 (218)
-.||++|.+ +.+....+.+...+.+++.|.... . ..+.. -++.-++--.++++ +..+
T Consensus 139 w~~v~ii~~--d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i-~~~~ 215 (384)
T 3qek_A 139 WNHVILIVS--DDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEA-KELE 215 (384)
T ss_dssp CCEEEEEEE--SSHHHHHHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHH-HTSS
T ss_pred CeEEEEEEE--cCcccHHHHHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHH-HhcC
Confidence 468999987 556677788888888988886310 0 11111 25666666666776 4567
Q ss_pred ccEEEEEee
Q 027801 135 YTAVLCIGA 143 (218)
Q Consensus 135 yDaVIaLG~ 143 (218)
.|.||..|.
T Consensus 216 ~~vii~~~~ 224 (384)
T 3qek_A 216 ARVIILSAS 224 (384)
T ss_dssp CCEEEEECC
T ss_pred CcEEEEECC
Confidence 898888664
No 331
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=27.33 E-value=68 Score=29.62 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=23.8
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHH
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak 127 (218)
+.-.+.|+++||. .++-+||...+|+.-.
T Consensus 7 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a 35 (566)
T 2vbi_A 7 MYLAERLVQIGLK----HHFAVAGDYNLVLLDQ 35 (566)
T ss_dssp HHHHHHHHHHTCS----EEEECCCTTTHHHHHH
T ss_pred HHHHHHHHHcCCC----EEEeCCCCccHHHHHH
Confidence 4456788889997 7999999999998744
No 332
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=27.33 E-value=81 Score=29.03 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=24.0
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHH
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak 127 (218)
+.-.+.|+++||. +++-+||...+|+.-.
T Consensus 7 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~da 35 (549)
T 3eya_A 7 AYIAKTLESAGVK----RIWGVTGDSLNGLSDS 35 (549)
T ss_dssp HHHHHHHHHTTCC----EEEECCCGGGHHHHHH
T ss_pred HHHHHHHHHCCCC----EEEEcCCCchHHHHHH
Confidence 4456789999997 7999999999998743
No 333
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=26.79 E-value=67 Score=24.29 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 91 ~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
..+++.|.+.++..|+. .+++++ +-...++| ...+.||.|++.+++
T Consensus 76 ~~~~~~a~~~~~~~~~~-~~~~~~-~~d~~~~~------~~~~~~D~v~~~~~l 121 (219)
T 3dlc_A 76 KHMNEIALKNIADANLN-DRIQIV-QGDVHNIP------IEDNYADLIVSRGSV 121 (219)
T ss_dssp HHHHHHHHHHHHHTTCT-TTEEEE-ECBTTBCS------SCTTCEEEEEEESCG
T ss_pred HHHHHHHHHHHHhcccc-CceEEE-EcCHHHCC------CCcccccEEEECchH
Confidence 46778888899988875 356555 44445555 235689999998765
No 334
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=26.40 E-value=50 Score=27.98 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=58.9
Q ss_pred EEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe----CCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH
Q 027801 78 FALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV----PGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD 153 (218)
Q Consensus 78 IaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V----PGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e 153 (218)
|+|+...--++ ...+ .+.|.+-|+. .++| |+++|.- +.+.+. -.|.+|..|.|+. ..+.+
T Consensus 16 i~Vir~~~~~~-a~~~----a~al~~gGi~-----~iEvt~~t~~a~~~I---~~l~~~-~p~~~IGAGTVlt--~~~a~ 79 (217)
T 3lab_A 16 IPVIVIDDLVH-AIPM----AKALVAGGVH-----LLEVTLRTEAGLAAI---SAIKKA-VPEAIVGAGTVCT--ADDFQ 79 (217)
T ss_dssp EEEECCSCGGG-HHHH----HHHHHHTTCC-----EEEEETTSTTHHHHH---HHHHHH-CTTSEEEEECCCS--HHHHH
T ss_pred EEEEEcCCHHH-HHHH----HHHHHHcCCC-----EEEEeCCCccHHHHH---HHHHHH-CCCCeEeeccccC--HHHHH
Confidence 45555443333 3333 3455555874 4444 5666643 333221 2478999999983 44444
Q ss_pred HHHHH---------HHHHHHHhchhcCC------ceEEEEcCCCCHHHHHHh
Q 027801 154 AVANS---------AASGVLSAGVNSGV------PCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 154 ~Va~~---------vs~gLm~lsL~~~v------PVifGVLT~~n~eQA~~R 190 (218)
-..++ ....+.+...++++ |++=|+.|++...+|++.
T Consensus 80 ~ai~AGA~fivsP~~~~evi~~~~~~~v~~~~~~~~~PG~~TptE~~~A~~~ 131 (217)
T 3lab_A 80 KAIDAGAQFIVSPGLTPELIEKAKQVKLDGQWQGVFLPGVATASEVMIAAQA 131 (217)
T ss_dssp HHHHHTCSEEEESSCCHHHHHHHHHHHHHCSCCCEEEEEECSHHHHHHHHHT
T ss_pred HHHHcCCCEEEeCCCcHHHHHHHHHcCCCccCCCeEeCCCCCHHHHHHHHHc
Confidence 33332 34567788888999 999999998888888654
No 335
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=26.35 E-value=1.7e+02 Score=21.22 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhc
Q 027801 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNS 170 (218)
Q Consensus 91 ~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~ 170 (218)
+..++.+.+.++..|++ ++.....| +..-.+-..++..++|- |++|.= |.+.--+++-..+++.+.+- .
T Consensus 82 ~~~l~~~~~~~~~~g~~---~~~~v~~G--~~~~~I~~~a~~~~~dl-IV~G~~--g~~~~~~~~~GSv~~~vl~~---~ 150 (162)
T 1mjh_A 82 KNKMENIKKELEDVGFK---VKDIIVVG--IPHEEIVKIAEDEGVDI-IIMGSH--GKTNLKEILLGSVTENVIKK---S 150 (162)
T ss_dssp HHHHHHHHHHHHHTTCE---EEEEEEEE--CHHHHHHHHHHHTTCSE-EEEESC--CSSCCTTCSSCHHHHHHHHH---C
T ss_pred HHHHHHHHHHHHHcCCc---eEEEEcCC--CHHHHHHHHHHHcCCCE-EEEcCC--CCCCccceEecchHHHHHHh---C
Confidence 45566777777778874 55554556 34445555667778995 456763 44443344445666666553 3
Q ss_pred CCceEE
Q 027801 171 GVPCIF 176 (218)
Q Consensus 171 ~vPVif 176 (218)
.+||.-
T Consensus 151 ~~pVlv 156 (162)
T 1mjh_A 151 NKPVLV 156 (162)
T ss_dssp CSCEEE
T ss_pred CCCEEE
Confidence 678753
No 336
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A
Probab=26.05 E-value=2.4e+02 Score=25.03 Aligned_cols=15 Identities=27% Similarity=0.087 Sum_probs=12.5
Q ss_pred hhhcCCccEEEEEee
Q 027801 129 LGKSGKYTAVLCIGA 143 (218)
Q Consensus 129 L~~~~~yDaVIaLG~ 143 (218)
+++.+.+|.+++.|+
T Consensus 196 ~I~~G~~d~aLvgG~ 210 (430)
T 1ox0_A 196 SIKFGFQDVMLVGGT 210 (430)
T ss_dssp HHHTTSCSEEEEEEE
T ss_pred HHHcCCCCEEEEeee
Confidence 347899999999886
No 337
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=26.02 E-value=77 Score=27.75 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHH
Q 027801 89 VTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANS 158 (218)
Q Consensus 89 It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~ 158 (218)
++..+++.+.+.|+..|++ ++..| +|-=..+..|++.+..|+|+ -++.+=+.|.+..
T Consensus 127 vt~~~~~~~~~lL~~~gip-----~i~ap--~EADa~iA~La~~g~~~~i~------S~D~D~l~~g~~~ 183 (340)
T 1b43_A 127 VNEMLIEDAKKLLELMGIP-----IVQAP--SEGEAQAAYMAAKGSVYASA------SQDYDSLLFGAPR 183 (340)
T ss_dssp GTHHHHHHHHHHHHHHTCC-----EEECS--SCHHHHHHHHHHHTSSSEEE------CSSSHHHHTTCSE
T ss_pred CCHHHHHHHHHHHHHcCCc-----EEEcC--hhHHHHHHHHHHcCCEEEEE------ccCCCcceecCcE
Confidence 3467888999999999975 78899 78888888888877666653 4666666655543
No 338
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=25.94 E-value=1.2e+02 Score=23.63 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=21.3
Q ss_pred EEEEEEcccC-HHHHHHHHHHHHHH-HHHCCCCCCCeEEEEe
Q 027801 77 RFALVVARFN-ELVTKLLLEGALET-FKKYSVKEENIDVVWV 116 (218)
Q Consensus 77 RIaIV~Srfn-~~It~~Ll~gA~~~-L~~~Gv~~e~I~vv~V 116 (218)
||+||.+.-+ .-.++.|.+...+. |++.|. +++++.+
T Consensus 4 kilii~gS~r~~g~t~~la~~i~~~~l~~~g~---~v~~~dl 42 (197)
T 2vzf_A 4 SIVAISGSPSRNSTTAKLAEYALAHVLARSDS---QGRHIHV 42 (197)
T ss_dssp EEEEEECCSSTTCHHHHHHHHHHHHHHHHSSE---EEEEEEG
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHHHHCCC---eEEEEEc
Confidence 6666665532 34456666666666 666664 3555554
No 339
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=25.75 E-value=98 Score=28.32 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=23.5
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHH
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak 127 (218)
+.-.+.|+++||. .++-+||...+|+.-.
T Consensus 9 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a 37 (552)
T 1ovm_A 9 DYLLDRLTDCGAD----HLFGVPGDYNLQFLDH 37 (552)
T ss_dssp HHHHHHHHHTTCC----EEEECCCGGGHHHHHH
T ss_pred HHHHHHHHHcCCC----EEEECCChhHHHHHHH
Confidence 3456788899996 7999999999998643
No 340
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=25.40 E-value=99 Score=28.53 Aligned_cols=29 Identities=17% Similarity=0.513 Sum_probs=23.4
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHH
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak 127 (218)
+.-.+.|+++||+ .++-+||...+|+.-.
T Consensus 29 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a 57 (570)
T 2vbf_A 29 DYLLDRLHELGIE----EIFGVPGDYNLQFLDQ 57 (570)
T ss_dssp HHHHHHHHHTTCC----EEEECCCGGGHHHHHH
T ss_pred HHHHHHHHHcCCC----EEEECCCcchHHHHHH
Confidence 4456778889996 7999999999998643
No 341
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=25.20 E-value=72 Score=30.69 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=24.4
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHH
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak 127 (218)
+.-.+.|+++||. .++-+||...+|+.-.
T Consensus 86 ~~lv~~L~~~GV~----~vFg~PG~~~~pl~da 114 (677)
T 1t9b_A 86 QIFNEMMSRQNVD----TVFGYPGGAILPVYDA 114 (677)
T ss_dssp HHHHHHHHHTTCC----EEEECCCGGGHHHHHH
T ss_pred HHHHHHHHHcCCC----EEEEecCccHHHHHHH
Confidence 4557889999997 7999999999998744
No 342
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=25.12 E-value=51 Score=28.05 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=51.4
Q ss_pred HHHHHCCCCCCCeEE-EEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHH---------HHHHHHHhch
Q 027801 99 ETFKKYSVKEENIDV-VWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANS---------AASGVLSAGV 168 (218)
Q Consensus 99 ~~L~~~Gv~~e~I~v-v~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~---------vs~gLm~lsL 168 (218)
+.|.+-|+. -+++ ++-|++.|.--.+++- - -|.+|..|.|+. ..+.+...++ ....+.+...
T Consensus 53 ~al~~gGi~--~iEvt~~t~~a~e~I~~l~~~---~-~~~~iGaGTVlt--~~~a~~Ai~AGA~fIvsP~~~~~vi~~~~ 124 (232)
T 4e38_A 53 KVLAENGLP--AAEITFRSDAAVEAIRLLRQA---Q-PEMLIGAGTILN--GEQALAAKEAGATFVVSPGFNPNTVRACQ 124 (232)
T ss_dssp HHHHHTTCC--EEEEETTSTTHHHHHHHHHHH---C-TTCEEEEECCCS--HHHHHHHHHHTCSEEECSSCCHHHHHHHH
T ss_pred HHHHHCCCC--EEEEeCCCCCHHHHHHHHHHh---C-CCCEEeECCcCC--HHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 445556875 2333 2346666643332221 1 267888888863 4444433332 2345677778
Q ss_pred hcCCceEEEEcCCCCHHHHHHh
Q 027801 169 NSGVPCIFGVLTCDNMDQALNR 190 (218)
Q Consensus 169 ~~~vPVifGVLT~~n~eQA~~R 190 (218)
++++|++-|+.|+....+|++.
T Consensus 125 ~~gi~~ipGv~TptEi~~A~~~ 146 (232)
T 4e38_A 125 EIGIDIVPGVNNPSTVEAALEM 146 (232)
T ss_dssp HHTCEEECEECSHHHHHHHHHT
T ss_pred HcCCCEEcCCCCHHHHHHHHHc
Confidence 8899999999998888888754
No 343
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=25.04 E-value=29 Score=28.09 Aligned_cols=45 Identities=7% Similarity=0.067 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 91 ~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
..+++.|.+.++..|+. .+++++ +-...++| ...+.||.|++.++
T Consensus 79 ~~~~~~a~~~~~~~~~~-~~v~~~-~~d~~~~~------~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 79 SGFIDIFNRNARQSGLQ-NRVTGI-VGSMDDLP------FRNEELDLIWSEGA 123 (267)
T ss_dssp HHHHHHHHHHHHHTTCT-TTEEEE-ECCTTSCC------CCTTCEEEEEESSC
T ss_pred HHHHHHHHHHHHHcCCC-cCcEEE-EcChhhCC------CCCCCEEEEEEcCC
Confidence 45777888888887764 234443 22223333 12345565555544
No 344
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=24.91 E-value=1.3e+02 Score=23.31 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=26.1
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHH-CCCCCCCeEEEEeCC
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKK-YSVKEENIDVVWVPG 118 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~-~Gv~~e~I~vv~VPG 118 (218)
.||+||...-+ --++.|.+...+.|.+ .|+ +++++.+..
T Consensus 5 ~kiliiy~S~~-GnT~~~a~~i~~~l~~~~g~---~v~~~~l~~ 44 (188)
T 2ark_A 5 GKVLVIYDTRT-GNTKKMAELVAEGARSLEGT---EVRLKHVDE 44 (188)
T ss_dssp EEEEEEECCSS-SHHHHHHHHHHHHHHTSTTE---EEEEEETTT
T ss_pred CEEEEEEECCC-cHHHHHHHHHHHHHhhcCCC---eEEEEEhhh
Confidence 37888887644 4477788888888877 665 355555543
No 345
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=24.73 E-value=66 Score=25.39 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHCCCC
Q 027801 91 KLLLEGALETFKKYSVK 107 (218)
Q Consensus 91 ~~Ll~gA~~~L~~~Gv~ 107 (218)
..+++.|.+.+++.|+.
T Consensus 69 ~~~l~~a~~~~~~~~~~ 85 (256)
T 1nkv_A 69 SLFTAQAKRRAEELGVS 85 (256)
T ss_dssp HHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 45677788888777764
No 346
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=24.67 E-value=2.5e+02 Score=26.03 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=53.0
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
.+.+.+.|+++.-+.+ |+|.= +-+.+.|.++.++|.|.- .|.|.--..|...++.-+..+.|+.|=---.-
T Consensus 217 ~~l~~eaGlP~gvvnv--v~g~~--~~~g~~L~~~p~vd~V~F-----TGS~~vG~~i~~~aa~~l~~v~lELGGk~p~I 287 (520)
T 3ed6_A 217 FELMEEVGFPKGTINL--ILGAG--SEVGDVMSGHKEVDLVSF-----TGGIETGKHIMKNAANNVTNIALELGGKNPNI 287 (520)
T ss_dssp HHHHHHHCCCTTSEEE--CCSCC--TTHHHHHHHCTTCSEEEE-----ESCHHHHHHHHHHHHTTTCEEEEECCCCCEEE
T ss_pred HHHHHHhCCCCCeEEE--EeCCC--hHHHHHHHhCCCcCEEEE-----ECCHHHHHHHHHHhhhcCCCEEEEcCCCCeeE
Confidence 3556777887665555 45521 124456777778998764 46677777777777776666666654322233
Q ss_pred EcCCCCHHHHHHhh
Q 027801 178 VLTCDNMDQALNRA 191 (218)
Q Consensus 178 VLT~~n~eQA~~Ra 191 (218)
|+-.-|.++|.+++
T Consensus 288 V~~dADl~~Aa~~i 301 (520)
T 3ed6_A 288 IFDDADFELAVDQA 301 (520)
T ss_dssp ECTTSCHHHHHHHH
T ss_pred ECCCCCHHHHHHHH
Confidence 55556888887654
No 347
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=24.66 E-value=47 Score=26.53 Aligned_cols=93 Identities=15% Similarity=0.113 Sum_probs=47.4
Q ss_pred CEEEEEEcccC-------HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc-ch-----------------HHHHHHHhh
Q 027801 76 LRFALVVARFN-------ELVTKLLLEGALETFKKYSVKEENIDVVWVPGS-FE-----------------IGVVAQQLG 130 (218)
Q Consensus 76 ~RIaIV~Srfn-------~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA-~E-----------------LP~aak~L~ 130 (218)
.||+|+.+..+ ......=+.+..+.|.+.|+ +++++..-|- .. +.+.....+
T Consensus 6 ~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~---~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l 82 (224)
T 1u9c_A 6 KRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGY---DVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARL 82 (224)
T ss_dssp CEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTC---EEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEEC
T ss_pred ceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCC---eEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCCh
Confidence 48999998221 10000112367888888886 4777765431 10 111111111
Q ss_pred ---hcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceE
Q 027801 131 ---KSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 131 ---~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
....||+||..|-. -..+++..+.-...+.+-..+.++||.
T Consensus 83 ~~~~~~~~D~livpGG~----~~~~~l~~~~~l~~~l~~~~~~~k~ia 126 (224)
T 1u9c_A 83 SKDDAHGFDAIFLPGGH----GTMFDFPDNETLQYVLQQFAEDGRIIA 126 (224)
T ss_dssp CGGGGSSCSEEEECCCT----THHHHSTTCHHHHHHHHHHHHTTCEEE
T ss_pred HHcChhhCCEEEECCCc----chHHHhhcCHHHHHHHHHHHHCCCEEE
Confidence 12579999988842 222333333434444444455677765
No 348
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=24.53 E-value=3.1e+02 Score=22.85 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=55.9
Q ss_pred CCCEEEEEEcc--cCHHHHHHHHHHHHHHHHHCC-----CCCCCeEEEEeCCcchH---HHHHHHhhhcCCccEEEEEee
Q 027801 74 EGLRFALVVAR--FNELVTKLLLEGALETFKKYS-----VKEENIDVVWVPGSFEI---GVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 74 ~~~RIaIV~Sr--fn~~It~~Ll~gA~~~L~~~G-----v~~e~I~vv~VPGA~EL---P~aak~L~~~~~yDaVIaLG~ 143 (218)
+..|||++... -...+...+.+++.-.+++.+ +.-..++++..-...+- --++++|+...+.++|| |.
T Consensus 3 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aii--G~ 80 (374)
T 3n0x_A 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAI--GT 80 (374)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEE--EC
T ss_pred CCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEE--cC
Confidence 45799999853 234555666666666655531 33345777666554443 34456777777899877 54
Q ss_pred eeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 144 VVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 144 VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
. +..++..+..+.-+.++|++..
T Consensus 81 ~-----------~s~~~~a~~~~~~~~~ip~i~~ 103 (374)
T 3n0x_A 81 S-----------SSAAALADLPVAEENKKILIVE 103 (374)
T ss_dssp S-----------SHHHHHHHHHHHHHHTCCEEEC
T ss_pred C-----------CcHHHHHHHHHHHHcCccEEEc
Confidence 3 2345556667777778888764
No 349
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=24.53 E-value=38 Score=26.82 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 91 ~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
..+++.|.+.+.+.|+. .+++++ +-...++|+ ..+.||.|++.+++
T Consensus 79 ~~~~~~a~~~~~~~~~~-~~~~~~-~~d~~~~~~------~~~~fD~v~~~~~l 124 (257)
T 3f4k_A 79 PDFIEIFNENAVKANCA-DRVKGI-TGSMDNLPF------QNEELDLIWSEGAI 124 (257)
T ss_dssp HHHHHHHHHHHHHTTCT-TTEEEE-ECCTTSCSS------CTTCEEEEEEESCS
T ss_pred HHHHHHHHHHHHHcCCC-CceEEE-ECChhhCCC------CCCCEEEEEecChH
Confidence 45777888888888875 235444 333344541 24567777777654
No 350
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=24.42 E-value=2.5e+02 Score=21.73 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=38.6
Q ss_pred CEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHH-
Q 027801 76 LRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYD- 153 (218)
Q Consensus 76 ~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e- 153 (218)
+||+|+.-.-+ .+. .+.|++.|+ +++.++-. + .+ ..||++|.-|- ....++
T Consensus 2 m~I~il~~~~~~~~~--------~~~l~~~g~-----~~~~~~~~-~------~l---~~~d~iil~GG----~~~~~~~ 54 (196)
T 2nv0_A 2 LTIGVLGLQGAVREH--------IHAIEACGA-----AGLVVKRP-E------QL---NEVDGLILPGG----ESTTMRR 54 (196)
T ss_dssp CEEEEECSSSCCHHH--------HHHHHHTTC-----EEEEECSG-G------GG---GGCSEEEECCS----CHHHHHH
T ss_pred cEEEEEEccCCcHHH--------HHHHHHCCC-----EEEEeCCh-H------HH---hhCCEEEECCC----ChhhHHH
Confidence 58999963212 222 255666676 34444421 1 12 36999998884 222232
Q ss_pred HHHHHHHHHHHHhchhcCCceEEEE
Q 027801 154 AVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 154 ~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
+-.+.-...+.+-.++.++||. ||
T Consensus 55 ~~~~~~~~~~i~~~~~~~~pil-gI 78 (196)
T 2nv0_A 55 LIDTYQFMEPLREFAAQGKPMF-GT 78 (196)
T ss_dssp HHHHTTCHHHHHHHHHTTCCEE-EE
T ss_pred HhhhHHHHHHHHHHHHCCCcEE-EE
Confidence 2111111344455557789975 55
No 351
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=24.34 E-value=99 Score=28.90 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=23.4
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHH
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak 127 (218)
+...+.|+++||. .++-+||...+|+.-.
T Consensus 31 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a 59 (616)
T 2pan_A 31 DAAMYVLEKEGIT----TAFGVPGAAINPFYSA 59 (616)
T ss_dssp HHHHHHHHHTTCC----EEEECCCGGGHHHHHH
T ss_pred HHHHHHHHHCCCC----EEEECCCCccHHHHHH
Confidence 3456678899997 7999999999998744
No 352
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=24.33 E-value=1.1e+02 Score=25.55 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=43.8
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEe-CCcchHHHHHHHhhhcC----CccEEEEE
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWV-PGSFEIGVVAQQLGKSG----KYTAVLCI 141 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V-PGA~ELP~aak~L~~~~----~yDaVIaL 141 (218)
+.||+||.. +......+.+...+.+++.|+. .+....+ +|.-+.--.++++...+ +.|+|+..
T Consensus 141 ~~~v~ii~~--~~~~g~~~~~~~~~~~~~~G~~--vv~~~~~~~~~~d~~~~l~~i~~~~~~~~~~d~v~~~ 208 (374)
T 3n0x_A 141 GVTIATLAQ--DYAFGRDGVAAFKEALAKTGAT--LATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVI 208 (374)
T ss_dssp TEEEEEEEE--SSHHHHHHHHHHHHHHTTTTCE--EEEEEEECTTCCCCHHHHHHHHHHHTTCSSEEEEEEC
T ss_pred CCEEEEEeC--CchHHHHHHHHHHHHHHHcCCE--EeeeecCCCCCccHHHHHHHHHhcCCCCCCCCEEEEE
Confidence 359999975 5577788899999999999974 2333334 47777666667775433 28888775
No 353
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=24.20 E-value=1.2e+02 Score=28.32 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHh
Q 027801 93 LLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSA 166 (218)
Q Consensus 93 Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~l 166 (218)
..+.-.+.|+++||+ .++-+||...+|+.-.. .+..++.-|. .++|-.|--.+.|..++
T Consensus 33 ~a~~lv~~L~~~GV~----~vFg~PG~~~~~l~dal-~~~~~i~~i~----------~~hE~~Aa~aA~GyAr~ 91 (604)
T 2x7j_A 33 YIGSFIDEFALSGIT----DAVVCPGSRSTPLAVLC-AAHPDISVHV----------QIDERSAGFFALGLAKA 91 (604)
T ss_dssp HHHHHHHHHHHHTCC----EEEECCCSTTHHHHHHH-HHCTTCEEEE----------CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC----EEEECcCcccHHHHHHH-HhCCCceEEE----------ecChHHHHHHHHHHHHh
Confidence 345567888999997 79999999999987443 2332222221 23455555555555554
No 354
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=24.18 E-value=1.6e+02 Score=23.86 Aligned_cols=93 Identities=16% Similarity=0.052 Sum_probs=57.2
Q ss_pred CCCEEEEEEcccCHHH----HHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCC
Q 027801 74 EGLRFALVVARFNELV----TKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGD 148 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~I----t~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGe 148 (218)
..+|++|+.+- +++ .|.=-.-..+.|++.|.. ......||.-.| |=-++++++ ..++|.||+-|-+=-|
T Consensus 29 ~~~rvaIistG--dEl~~G~~Dsn~~~L~~~L~~~G~~--v~~~~iv~Dd~~~I~~al~~a~-~~~~DlVIttGGts~g- 102 (185)
T 3rfq_A 29 VVGRALVVVVD--DRTAHGDEDHSGPLVTELLTEAGFV--VDGVVAVEADEVDIRNALNTAV-IGGVDLVVSVGGTGVT- 102 (185)
T ss_dssp CCEEEEEEEEC--HHHHTTCCCSHHHHHHHHHHHTTEE--EEEEEEECSCHHHHHHHHHHHH-HTTCSEEEEESCCSSS-
T ss_pred CCCEEEEEEEC--cccCCCCcCcHHHHHHHHHHHCCCE--EEEEEEeCCCHHHHHHHHHHHH-hCCCCEEEECCCCCCC-
Confidence 56789988752 111 111112234566777874 456667998877 444555554 2579999999998333
Q ss_pred chhHHHHHHHHHH-----------HHHHhchhcCCce
Q 027801 149 TTHYDAVANSAAS-----------GVLSAGVNSGVPC 174 (218)
Q Consensus 149 T~H~e~Va~~vs~-----------gLm~lsL~~~vPV 174 (218)
++|++-+++.. -+..++++-++|.
T Consensus 103 --~~D~t~eal~~l~~~~l~G~~~~f~~v~~kpG~p~ 137 (185)
T 3rfq_A 103 --PRDVTPESTREILDREILGIAEAIRASGLSAGIID 137 (185)
T ss_dssp --TTCCHHHHHHTTCSEECHHHHHHHHHHHHHTTCHH
T ss_pred --CcccHHHHHHHHhcccCccHHHHHHHHhcCCCCCc
Confidence 44555554443 4567888888886
No 355
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=24.14 E-value=3.2e+02 Score=24.34 Aligned_cols=67 Identities=12% Similarity=-0.042 Sum_probs=40.4
Q ss_pred hhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCC-----CHHHHHHhhCCCCCCcHHHHHH
Q 027801 130 GKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCD-----NMDQALNRAGGKSGNKGAEAAL 204 (218)
Q Consensus 130 ~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~-----n~eQA~~Rag~k~gnKG~EAA~ 204 (218)
++..++||||-+..- | =..+.+....+-+- +.-+.|+|++.=-.--. +.+|..-|. .
T Consensus 330 ~~~~~~DGvI~~~~~--~-C~~~~~~~~~~~~~---~~~~~gIP~l~ie~D~~~~r~~~~~q~~TRi------------e 391 (408)
T 3o3m_A 330 LVEGKCDGAFYHMNR--S-CKLMSLIQYEMQRR---AAEETGLPYAGFDGDQADPRAFTNAQFETRI------------Q 391 (408)
T ss_dssp HHHTTCSEEEEEEES--S-CHHHHTTHHHHHHH---HHHHHCCCEEEEEECSSCGGGCCHHHHHHHH------------H
T ss_pred HHHcCCCEEEEecCC--C-CcccHHHHHHHHHH---HHHhcCCCEEEEeccCCCCCCCCHHHHHHHH------------H
Confidence 456889999987663 1 22223332222222 23478999986554433 678888886 5
Q ss_pred HHHHHHHHHh
Q 027801 205 TAIEMASLFE 214 (218)
Q Consensus 205 aAleM~~L~~ 214 (218)
|=+||+...+
T Consensus 392 AF~Eml~~~k 401 (408)
T 3o3m_A 392 GLVEVMEERK 401 (408)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 6677776554
No 356
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=24.11 E-value=94 Score=24.27 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=47.3
Q ss_pred CCCEEEEEEcccCHHHHHH-H----HHHHHHHHHHC-----CCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEe
Q 027801 74 EGLRFALVVARFNELVTKL-L----LEGALETFKKY-----SVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~-L----l~gA~~~L~~~-----Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG 142 (218)
..+|++|+.+- +++... - -....+.|+++ |+. -+....||.-.| |=-+++.+++..++|.||+-|
T Consensus 4 ~~~rv~IistG--de~~~G~~~d~n~~~l~~~l~~~~~~~~G~~--v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittG 79 (167)
T 1uuy_A 4 PEYKVAILTVS--DTVSAGAGPDRSGPRAVSVVDSSSEKLGGAK--VVATAVVPDEVERIKDILQKWSDVDEMDLILTLG 79 (167)
T ss_dssp CSEEEEEEEEC--HHHHTTSSCCSHHHHHHHHHHHTTTTTTSEE--EEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred CCcEEEEEEEC--CcccCCCCccCcHHHHHHHHHhccccCCCcE--EeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 45688888752 222110 0 01222445555 663 456677998876 555666665546899999999
Q ss_pred eeeeCCchhHHHHHHHHHH
Q 027801 143 AVVRGDTTHYDAVANSAAS 161 (218)
Q Consensus 143 ~VIrGeT~H~e~Va~~vs~ 161 (218)
-+= ..++|++.+++.+
T Consensus 80 G~g---~g~~D~t~~a~~~ 95 (167)
T 1uuy_A 80 GTG---FTPRDVTPEATKK 95 (167)
T ss_dssp CCS---SSTTCCHHHHHHH
T ss_pred CCC---CCCCCchHHHHHH
Confidence 983 3346666555554
No 357
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=29.83 E-value=16 Score=29.51 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=19.3
Q ss_pred CCCEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCC
Q 027801 74 EGLRFALVVARFN-ELVTKLLLEGALETFKKYSVK 107 (218)
Q Consensus 74 ~~~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~ 107 (218)
+.+||+||.+.=. .-.+..|++.+.+.+.+ |++
T Consensus 5 ~~mkIliI~gS~r~~s~t~~la~~~~~~~~~-g~~ 38 (199)
T 3s2y_A 5 SPLHFVTLLGSLRKASFNAAVARALPEIAPE-GIA 38 (199)
Confidence 3467777665433 34556666666666665 654
No 358
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=23.90 E-value=2.4e+02 Score=25.45 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=53.9
Q ss_pred HHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 99 ETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 99 ~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
+.|.+.|+++.-+.+ |+|.-| ..+.|+++.++|.|.- .|.|.--..|...+++.+..+.++.|=---.-|
T Consensus 174 ~~l~~aglP~gv~~v--v~g~~~---~~~~l~~~~~v~~v~f-----TGS~~~g~~i~~~aa~~~~~v~lElGGk~p~iV 243 (462)
T 3etf_A 174 RILAEAGTPAGVYGW--VNANNE---GVSQMINDPRIAAVTV-----TGSVRAGAAIGAQAGAALKKCVLELGGSDPFIV 243 (462)
T ss_dssp HHHHHTTCCBTTEEE--CCCCHH---HHHHHHTSTTEEEEEE-----ESCHHHHHHHHHHHHHTTCCEEEECCCCEEEEE
T ss_pred HHHHHhCCCcCeEEE--EECCHH---HHHHHhcCCCCCEEEE-----eCCchHHHHHHHHHhccCCceEEEcCCCCccEE
Confidence 456778887655555 477433 3467777788998764 456777777777777766666666652222334
Q ss_pred cCCCCHHHHHHhh
Q 027801 179 LTCDNMDQALNRA 191 (218)
Q Consensus 179 LT~~n~eQA~~Ra 191 (218)
+-.-|.++|.+++
T Consensus 244 ~~dADl~~Aa~~i 256 (462)
T 3etf_A 244 LNDADLELAVKAA 256 (462)
T ss_dssp CTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 5556888887664
No 359
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=23.73 E-value=67 Score=27.90 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=29.1
Q ss_pred CCCEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 027801 74 EGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWV 116 (218)
Q Consensus 74 ~~~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V 116 (218)
..+||+||.+.-. .-.+..|++.+.+.+++.|++ ++++.+
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~e---veiidL 97 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAE---TRIFDP 97 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCE---EEEBCC
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCE---EEEEeh
Confidence 4579988887654 567778888888888888874 555554
No 360
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=23.64 E-value=93 Score=25.17 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 91 KLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 91 ~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
..+++.|.+.+.+.|.. .+++++ +....++| +.||.|++.+++
T Consensus 97 ~~~~~~a~~~~~~~~~~-~~~~~~-~~d~~~~~---------~~fD~v~~~~~l 139 (287)
T 1kpg_A 97 KNQANHVQQLVANSENL-RSKRVL-LAGWEQFD---------EPVDRIVSIGAF 139 (287)
T ss_dssp HHHHHHHHHHHHTCCCC-SCEEEE-ESCGGGCC---------CCCSEEEEESCG
T ss_pred HHHHHHHHHHHHhcCCC-CCeEEE-ECChhhCC---------CCeeEEEEeCch
Confidence 46778888888887764 345544 33334444 568888887765
No 361
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=23.61 E-value=2.8e+02 Score=25.72 Aligned_cols=84 Identities=21% Similarity=0.152 Sum_probs=55.8
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
.+.+.+.|+++.-+.+ |+|.- +. .+.|+++.++|.|.- .|.|.--..|+..+++-+..+.++.+=---.-
T Consensus 209 ~~l~~eaGlP~gvv~v--v~g~~--~~-~~~L~~~p~vd~I~F-----TGS~~vG~~i~~~aa~~lkpv~lELGGk~p~I 278 (521)
T 4e4g_A 209 AELMIEAGLPAGILNV--VNGDK--GA-VDAILTHPDIAAVSF-----VGSTPIARYVYGTAAMNGKRAQCFGGAKNHMI 278 (521)
T ss_dssp HHHHHHTTCCTTSEEE--CCCCH--HH-HHHHHTCTTCCEEEE-----ESCHHHHHHHHHHHHHTTCEEEEECCCCEEEE
T ss_pred HHHHHHhCCCcCeEEE--EeCCh--HH-HHHHHhCCCcCEEEE-----ECCHHHHHHHHHHHhhcCCCeeecCCCCCeEE
Confidence 3557788888655544 67843 33 377877778998865 56677777788877776666666654333333
Q ss_pred EcCCCCHHHHHHhh
Q 027801 178 VLTCDNMDQALNRA 191 (218)
Q Consensus 178 VLT~~n~eQA~~Ra 191 (218)
|+-.-|.++|.+++
T Consensus 279 V~~dADl~~Aa~~i 292 (521)
T 4e4g_A 279 IMPDADLDQAANAL 292 (521)
T ss_dssp ECTTSCHHHHHHHH
T ss_pred EcCCCCHHHHHHHH
Confidence 55556888887664
No 362
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=23.52 E-value=1.2e+02 Score=23.29 Aligned_cols=54 Identities=13% Similarity=0.029 Sum_probs=32.7
Q ss_pred CCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEee
Q 027801 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 72 ~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
+.++.||+++....+... |++.. .++.++.++.. .-+++.| ..+++|+++.-..
T Consensus 127 dL~g~~i~v~~g~~~~~~-----------l~~~~---~~~~~~~~~~~---~~~~~~L-~~GrvDa~i~~~~ 180 (249)
T 4f3p_A 127 DLNGKVIAAKTGTATIDW-----------IKAHL---KPKEIRQFPNI---DQAYLAL-EAGRVDAAMHDTP 180 (249)
T ss_dssp GGTTSEEEEETTSHHHHH-----------HHHHC---CCSEEEEESSH---HHHHHHH-HTTSSSEEEEEHH
T ss_pred HhCCCEEEEeCCChHHHH-----------HHhcC---CCceEEEcCCH---HHHHHHH-HcCCeeEEEeCcH
Confidence 456789998876654432 22222 14567777753 3344444 6899999887443
No 363
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=23.46 E-value=44 Score=28.08 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhchhc--CCceEEEEcCCCCHHHHHHhh
Q 027801 153 DAVANSAASGVLSAGVNS--GVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~--~vPVifGVLT~~n~eQA~~Ra 191 (218)
.|+||.+.++.+...-+. +++.+|-=+- .-.||+..+.
T Consensus 141 ~ylCN~i~Y~sL~~~~~~~~~~~~gFIHVP-~lpeq~~~~~ 180 (216)
T 4gxh_A 141 TFVCNHVMYGLLHYLAQNTPSVRGGFIHVP-YLPEQAVKDG 180 (216)
T ss_dssp SSHHHHHHHHHHHHHHHHCTTSEEEEEEEC-BCHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHcCCCCeEEEEEcC-CChHhhccCC
Confidence 799999999998875544 4555654443 4568887664
No 364
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=23.43 E-value=1e+02 Score=26.59 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=30.6
Q ss_pred CCCEEEEEEcccCH-HHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 027801 74 EGLRFALVVARFNE-LVTKLLLEGALETFKKYSVKEENIDVVWV 116 (218)
Q Consensus 74 ~~~RIaIV~Srfn~-~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V 116 (218)
..+||+||.+-=++ -.+..|++.+++.|++.|. +++++.+
T Consensus 21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~---eV~v~DL 61 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGH---EVQVSDL 61 (280)
T ss_dssp -CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTC---EEEEEET
T ss_pred hCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCC---eEEEEEc
Confidence 56899999986553 4778899999999999986 3666654
No 365
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=23.41 E-value=62 Score=27.36 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=21.8
Q ss_pred CeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEee
Q 027801 110 NIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 110 ~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~ 143 (218)
.|....+|=.|+ ..-.+..+++..++|.||++|.
T Consensus 37 ~i~~~~lPv~y~~~~~~l~~~i~~~~Pd~VihvG~ 71 (223)
T 3ro0_A 37 SIVSEQVPTVFYKSLAVLREAMKKHQPDIIICVGQ 71 (223)
T ss_dssp EEEEEEECSCTTHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEEEEeeeEehhHHHHHHHHHHHhCCCEEEEecc
Confidence 366667777776 3333344445567888888886
No 366
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=23.37 E-value=76 Score=27.77 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=32.5
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch---HH---HHHHHhhhcCCc---cEEEEEee
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE---IG---VVAQQLGKSGKY---TAVLCIGA 143 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E---LP---~aak~L~~~~~y---DaVIaLG~ 143 (218)
+.|+.||... .+.+..++...+.|++. +++++.+|+--+ +. -+++. +...++ |.||++|=
T Consensus 26 ~~~~livtd~---~v~~~~~~~v~~~L~~~-----~~~~~~~~~~e~~k~~~~v~~~~~~-~~~~~~~r~d~iIavGG 94 (343)
T 3clh_A 26 KQKALIISDS---IVAGLHLPYLLERLKAL-----EVRVCVIESGEKYKNFHSLERILNN-AFEMQLNRHSLMIALGG 94 (343)
T ss_dssp SSCEEEEEEH---HHHTTTHHHHHTTEECS-----CEEEEEECSSGGGCSHHHHHHHHHH-HHHTTCCTTCEEEEEES
T ss_pred CCEEEEEECC---cHHHHHHHHHHHHHHhC-----CcEEEEeCCCCCCCCHHHHHHHHHH-HHhcCCCCCceEEEECC
Confidence 3578888754 23222333334444332 467777887643 22 22222 344556 99999983
No 367
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=23.34 E-value=44 Score=25.94 Aligned_cols=93 Identities=12% Similarity=0.130 Sum_probs=48.1
Q ss_pred CCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc-c---------hHHHHHHH-hhh--cCCccEEEE
Q 027801 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS-F---------EIGVVAQQ-LGK--SGKYTAVLC 140 (218)
Q Consensus 74 ~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA-~---------ELP~aak~-L~~--~~~yDaVIa 140 (218)
...||+|+...=.+. .=+.+..+.|.+.|+ +++++..-|- . -+++.... +.+ ...||++|.
T Consensus 8 ~~~~v~il~~~g~~~---~e~~~~~~~l~~ag~---~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liv 81 (190)
T 2vrn_A 8 TGKKIAILAADGVEE---IELTSPRAAIEAAGG---TTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLL 81 (190)
T ss_dssp TTCEEEEECCTTCBH---HHHHHHHHHHHHTTC---EEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEE
T ss_pred CCCEEEEEeCCCCCH---HHHHHHHHHHHHCCC---EEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEE
Confidence 457999997642222 123467788888886 3666654331 1 11111111 111 247999998
Q ss_pred EeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEE
Q 027801 141 IGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 141 LG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
.|- .-...++..+.-...+.+-..+.++||..
T Consensus 82 pGG----~~~~~~~~~~~~l~~~l~~~~~~gk~i~a 113 (190)
T 2vrn_A 82 PGG----TVNPDKLRLEEGAMKFVRDMYDAGKPIAA 113 (190)
T ss_dssp CCC----THHHHHHTTCHHHHHHHHHHHHTTCCEEE
T ss_pred CCC----chhHHHHhhCHHHHHHHHHHHHcCCEEEE
Confidence 883 21223333334344444445566888753
No 368
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=23.31 E-value=2.8e+02 Score=22.04 Aligned_cols=100 Identities=8% Similarity=0.075 Sum_probs=53.1
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc----hHHHHHHHhhhcCCccEEEEEeee--ee--C
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF----EIGVVAQQLGKSGKYTAVLCIGAV--VR--G 147 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~----ELP~aak~L~~~~~yDaVIaLG~V--Ir--G 147 (218)
+||+|-...|....... ++.+++.+++.|++ -|++. .+... +-+-.++++++..+..-....++- +. +
T Consensus 2 mkig~~~~~~~~~~~~~-~~~~l~~~~~~G~~--~vEl~-~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~l~~ 77 (290)
T 2qul_A 2 NKVGMFYTYWSTEWMVD-FPATAKRIAGLGFD--LMEIS-LGEFHNLSDAKKRELKAVADDLGLTVMCCIGLKSEYDFAS 77 (290)
T ss_dssp CCEEEETTSSCSSSCCC-HHHHHHHHHHTTCS--EEEEE-STTGGGSCHHHHHHHHHHHHHHTCEEEEEEEECGGGCTTC
T ss_pred cceeEEeeeecCccccc-HHHHHHHHHHhCCC--EEEEe-cCCccccchhhHHHHHHHHHHcCCceEEecCCCCCCCCCC
Confidence 46777777776532222 36778888999985 45554 44332 223344555555555544433321 00 0
Q ss_pred CchhHHHHHHHHHHHHHHhchhcCCceEEEEc
Q 027801 148 DTTHYDAVANSAASGVLSAGVNSGVPCIFGVL 179 (218)
Q Consensus 148 eT~H~e~Va~~vs~gLm~lsL~~~vPVifGVL 179 (218)
..+...--+-+..+..+++.-+.|.|.+.+.+
T Consensus 78 ~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~ 109 (290)
T 2qul_A 78 PDKSVRDAGTEYVKRLLDDCHLLGAPVFAGLT 109 (290)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEeec
Confidence 01110011224566777888888999887643
No 369
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=23.26 E-value=1.7e+02 Score=26.01 Aligned_cols=111 Identities=15% Similarity=0.145 Sum_probs=62.5
Q ss_pred hhhccchhhhhhHhhhcccCCCCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHh
Q 027801 51 RKERLSFVQTEAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFE-IGVVAQQL 129 (218)
Q Consensus 51 ~~~~~~~~~~~a~~~~~~~~~~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L 129 (218)
.-+.+.|....|..... .+.+++++..+.... .+ .+.+.|++.+++.+.. |...| +-..++.+
T Consensus 84 GsGKTtlal~la~~~~~------~g~~vlyi~~E~s~~---~~------~a~~~g~d~~~l~i~~-~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 84 SGGKTTLALAIVAQAQK------AGGTCAFIDAEHALD---PV------YARALGVNTDELLVSQ-PDNGEQALEIMELL 147 (366)
T ss_dssp TSSHHHHHHHHHHHHHH------TTCCEEEEESSCCCC---HH------HHHHTTCCGGGCEEEC-CSSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHH------CCCeEEEEECCCChh---HH------HHHHcCCCHHHceeec-CCcHHHHHHHHHHH
Confidence 33455565555544321 245788888775422 11 1456688777776654 55544 44455667
Q ss_pred hhcCCccEEE--EEeeee-eCCc------hhH---HHHHHHHHHHHHHhchhcCCceEEE
Q 027801 130 GKSGKYTAVL--CIGAVV-RGDT------THY---DAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 130 ~~~~~yDaVI--aLG~VI-rGeT------~H~---e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
.+++++|.|| .++.+. +.+. .|. .-......+.|..+.-++++||++-
T Consensus 148 ~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~ 207 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFI 207 (366)
T ss_dssp HTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 7778899887 355554 2211 111 1123455666777788999999763
No 370
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=22.92 E-value=1.4e+02 Score=27.64 Aligned_cols=92 Identities=18% Similarity=0.155 Sum_probs=56.4
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEE
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFG 177 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifG 177 (218)
.+.+.+.|+++.-+.++ +|.=| +.+.|.++.++|.|.-- |.|.--..|...+++-+..+.++.+=---.-
T Consensus 202 ~~l~~~aGlP~gvv~vv--~g~~~---~g~~L~~~p~v~~V~FT-----GS~~~G~~i~~~aa~~~~~v~lELGGk~p~I 271 (503)
T 1a4s_A 202 AEIFHEAGVPVGLVNVV--QGGAE---TGSLLCHHPNVAKVSFT-----GSVPTGKKVMEMSAKTVKHVTLELGGKSPLL 271 (503)
T ss_dssp HHHHHHTTCCTTSEEEC--CCSHH---HHHHHHHCTTCCEEEEE-----SCHHHHHHHHHHHHTTTCEEEEECCCCCEEE
T ss_pred HHHHHHhCCCcCeEEEE--ecCch---HHHHHHhCCCcCEEEEe-----CCHHHHHHHHHHhhhcCCceEEecCCcCeEE
Confidence 45677889887666554 66214 34667777889988654 5676666777666655555555543222222
Q ss_pred EcCCCCHHHHHHhhC-CCCCCcH
Q 027801 178 VLTCDNMDQALNRAG-GKSGNKG 199 (218)
Q Consensus 178 VLT~~n~eQA~~Rag-~k~gnKG 199 (218)
|+-.-|.++|.+++- ++..|-|
T Consensus 272 V~~dADl~~Aa~~i~~~~~~n~G 294 (503)
T 1a4s_A 272 IFKDCELENAVRGALMANFLTQG 294 (503)
T ss_dssp ECTTSCHHHHHHHHHHTTCGGGG
T ss_pred ECCCCCHHHHHHHHHHHHHhcCC
Confidence 444468888877743 4555555
No 371
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=22.58 E-value=1.6e+02 Score=26.15 Aligned_cols=59 Identities=24% Similarity=0.278 Sum_probs=31.5
Q ss_pred CEEEEEEccc-CHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc-----chHHHHHHHhhhcCCccEEEEEee
Q 027801 76 LRFALVVARF-NELVTKLLLEGALETFKKYSVKEENIDVVWVPGS-----FEIGVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 76 ~RIaIV~Srf-n~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA-----~ELP~aak~L~~~~~yDaVIaLG~ 143 (218)
.|+.||..+- -+. ..+++...+.|+ |+ +++..+|. +|.=..+-..++..++|.||++|=
T Consensus 51 ~r~liVtd~~~~~~--~g~~~~v~~~L~--g~-----~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG 115 (408)
T 1oj7_A 51 ARVLITYGGGSVKK--TGVLDQVLDALK--GM-----DVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGG 115 (408)
T ss_dssp CEEEEEECSSHHHH--HSHHHHHHHHTT--TS-----EEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred CEEEEEECCchhhh--ccHHHHHHHHhC--CC-----EEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6898987542 121 013444455554 54 34455654 222222222345678899999983
No 372
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=22.54 E-value=15 Score=34.77 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCe-EEEEeCCcchHHHHHHHhhhc--------CCccEEEEEeeeee
Q 027801 87 ELVTKLLLEGALETFKKYSVKEENI-DVVWVPGSFEIGVVAQQLGKS--------GKYTAVLCIGAVVR 146 (218)
Q Consensus 87 ~~It~~Ll~gA~~~L~~~Gv~~e~I-~vv~VPGA~ELP~aak~L~~~--------~~yDaVIaLG~VIr 146 (218)
+.+.+++++-+.+.|++.|+..++| .|+-|=|+-.+|++-+.+.+. .+.|-.||.||.+.
T Consensus 310 ~~~~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~ 378 (605)
T 4b9q_A 310 EDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQ 378 (605)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHH
Confidence 3445555566778888888876665 677899999999998777431 23444555555443
No 373
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=22.47 E-value=1.2e+02 Score=25.00 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=25.0
Q ss_pred CeEEEEeCCcchH-HHHHHHhhhcCCccEEEEEee
Q 027801 110 NIDVVWVPGSFEI-GVVAQQLGKSGKYTAVLCIGA 143 (218)
Q Consensus 110 ~I~vv~VPGA~EL-P~aak~L~~~~~yDaVIaLG~ 143 (218)
.|....+|=.|+- .-.+..+++..++|.||++|.
T Consensus 32 ~i~~~~lPv~~~~~~~~l~~~~~~~~Pd~vi~vG~ 66 (206)
T 1iu8_A 32 EVVGEILPVSFKRAREKLLKVLDDVRPDITINLGL 66 (206)
T ss_dssp TEEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEEEEEEeEHHHHHHHHHHHHHHhCCCEEEEccc
Confidence 5788889999973 223445555668899999996
No 374
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=22.44 E-value=1.7e+02 Score=27.00 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=24.0
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHH
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak 127 (218)
+.-.+.|+++||. +++-+||...+|+.-.
T Consensus 12 ~~lv~~L~~~GV~----~vFg~PG~~~~~l~da 40 (556)
T 3hww_A 12 AVILEALTRHGVR----HICIAPGSRSTLLTLA 40 (556)
T ss_dssp HHHHHHHHTTTCC----EEEECCCTTSHHHHHH
T ss_pred HHHHHHHHHCCCC----EEEEcCCCCcHHHHHH
Confidence 4456789999997 7999999999998743
No 375
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=22.42 E-value=1.9e+02 Score=21.23 Aligned_cols=77 Identities=13% Similarity=0.072 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCeEE--EEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHh
Q 027801 89 VTKLLLEGALETFKKYSVKEENIDV--VWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSA 166 (218)
Q Consensus 89 It~~Ll~gA~~~L~~~Gv~~e~I~v--v~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~l 166 (218)
-.+..++.+.+.+...|+. ++. ....| +..-.+-..++..++|- |++|.= |.+.-.+++-..++..+.+-
T Consensus 75 ~~~~~l~~~~~~~~~~g~~---~~~~~~~~~g--~~~~~I~~~a~~~~~Dl-IV~G~~--g~~~~~~~~~Gsv~~~vl~~ 146 (170)
T 2dum_A 75 EASRKLQEKAEEVKRAFRA---KNVRTIIRFG--IPWDEIVKVAEEENVSL-IILPSR--GKLSLSHEFLGSTVMRVLRK 146 (170)
T ss_dssp HHHHHHHHHHHHHHHHTTC---SEEEEEEEEE--CHHHHHHHHHHHTTCSE-EEEESC--CCCC--TTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCc---eeeeeEEecC--ChHHHHHHHHHHcCCCE-EEECCC--CCCccccceechHHHHHHHh
Confidence 3456777788888888885 443 44456 34445556667778995 556764 54444444455666666553
Q ss_pred chhcCCceEE
Q 027801 167 GVNSGVPCIF 176 (218)
Q Consensus 167 sL~~~vPVif 176 (218)
..+||..
T Consensus 147 ---~~~PVlv 153 (170)
T 2dum_A 147 ---TKKPVLI 153 (170)
T ss_dssp ---CSSCEEE
T ss_pred ---CCCCEEE
Confidence 4688865
No 376
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=22.33 E-value=2.3e+02 Score=23.72 Aligned_cols=38 Identities=18% Similarity=0.083 Sum_probs=28.7
Q ss_pred CEEEEEEcccCH-HHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 027801 76 LRFALVVARFNE-LVTKLLLEGALETFKKYSVKEENIDVVWV 116 (218)
Q Consensus 76 ~RIaIV~Srfn~-~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V 116 (218)
+||+||.+.-+. -.+..|.+.+.+.|++.|. +++++.+
T Consensus 3 mkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~---eV~~~dL 41 (273)
T 1d4a_A 3 RRALIVLAHSERTSFNYAMKEAAAAALKKKGW---EVVESDL 41 (273)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTC---EEEEEET
T ss_pred CEEEEEEeCCCCccHHHHHHHHHHHHHHhCCC---eEEEEEc
Confidence 488888877663 5788999999999998775 3566654
No 377
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=22.14 E-value=71 Score=29.16 Aligned_cols=75 Identities=16% Similarity=0.233 Sum_probs=48.2
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHH-H---HHHhchhcCC
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAAS-G---VLSAGVNSGV 172 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~-g---Lm~lsL~~~v 172 (218)
...|++.|.. -++...||.-.| |=-+++.+++ ++|.||+-|-+=-| ++|++-+++.+ | +-.++++=+.
T Consensus 210 ~~~l~~~G~~--v~~~~iv~Dd~~~i~~al~~a~~--~~DlvittGG~s~g---~~D~t~~al~~~G~i~f~~va~~PG~ 282 (411)
T 1g8l_A 210 HLMLEQLGCE--VINLGIIRDDPHALRAAFIEADS--QADVVISSGGVSVG---EADYTKTILEELGEIAFWKLAIKPGK 282 (411)
T ss_dssp HHHHHHTTCE--EEEEEEECSCHHHHHHHHHHHHH--HCSEEEECSSSCSS---SCSHHHHHHHHHSEEEEEEBSEESCC
T ss_pred HHHHHHCCCE--EEEEEEeCCCHHHHHHHHHHHhh--cCCEEEECCCCCCC---CcccHHHHHHhcCcEEEEEEEeeCCC
Confidence 3446677874 466777898877 4445555543 69999999998444 45555555443 1 1234555678
Q ss_pred ceEEEEc
Q 027801 173 PCIFGVL 179 (218)
Q Consensus 173 PVifGVL 179 (218)
|.++|++
T Consensus 283 p~~~g~~ 289 (411)
T 1g8l_A 283 PFAFGKL 289 (411)
T ss_dssp EEEEEEC
T ss_pred cEEEEEE
Confidence 9999986
No 378
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=22.09 E-value=43 Score=29.75 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=44.6
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCc-----chHHHHHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGS-----FEIGVVAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA-----~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
.|+.||....-. .+.+...+.|++.+ +.++ +|. +|.=.-+-..++..++|.||++| |.+.
T Consensus 37 ~r~liVtd~~~~----~~~~~v~~~L~~~~-----~~~f--~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG----GGsv 101 (358)
T 3jzd_A 37 KRALVLCTPNQQ----AEAERIADLLGPLS-----AGVY--AGAVMHVPIESARDATARAREAGADCAVAVG----GGST 101 (358)
T ss_dssp SCEEEECCGGGH----HHHHHHHHHHGGGE-----EEEE--CCCCTTCBHHHHHHHHHHHHHHTCSEEEEEE----SHHH
T ss_pred CeEEEEeCCcHH----HHHHHHHHHhccCC-----EEEe--cCCcCCCCHHHHHHHHHHhhccCCCEEEEeC----CcHH
Confidence 588888877532 34566666776543 2333 332 23222222334567899999999 5554
Q ss_pred hH--HHHHHHHHHHHHHhchhcCCceEEEEcCC
Q 027801 151 HY--DAVANSAASGVLSAGVNSGVPCIFGVLTC 181 (218)
Q Consensus 151 H~--e~Va~~vs~gLm~lsL~~~vPVifGVLT~ 181 (218)
.+ ++|+. ..++|++. |-|+
T Consensus 102 iD~aK~iA~-----------~~~~p~i~-IPTT 122 (358)
T 3jzd_A 102 TGLGKAIAL-----------ETGMPIVA-IPTT 122 (358)
T ss_dssp HHHHHHHHH-----------HHCCCEEE-EECS
T ss_pred HHHHHHHHh-----------ccCCCEEE-EeCC
Confidence 44 33332 35888875 4443
No 379
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=21.60 E-value=59 Score=27.26 Aligned_cols=38 Identities=13% Similarity=0.012 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhchhcCCceEEEEcCC-CCHHHHHHh
Q 027801 153 DAVANSAASGVLSAGVNSGVPCIFGVLTC-DNMDQALNR 190 (218)
Q Consensus 153 e~Va~~vs~gLm~lsL~~~vPVifGVLT~-~n~eQA~~R 190 (218)
-|+||.+.++.+...-+.+.|+-.|.+=+ .-.||+.++
T Consensus 141 ~yvCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~eq~~~~ 179 (215)
T 3giu_A 141 TFVCNHTLYHLGYLQDKHYPHLRFGFIHVPYIPEQVIGK 179 (215)
T ss_dssp SSHHHHHHHHHHHHHHHTCTTCEEEEEEECCCGGGGTTC
T ss_pred ccccHHHHHHHHHHHHhcCCCceEEEEEeCCCHHHhccC
Confidence 68899999998888766554444444433 455777654
No 380
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=21.33 E-value=1.4e+02 Score=22.32 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=49.0
Q ss_pred CCCCEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEE-eCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCch
Q 027801 73 NEGLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVW-VPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTT 150 (218)
Q Consensus 73 ~~~~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~-VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~ 150 (218)
...+||+||.-... ..+.. +.|++.|.. ++. +...- -|.+ +++..+||.|+. =.-..|.+.
T Consensus 6 ~r~~rILiVdD~~~~~~~l~-------~~L~~~G~~-----v~~~a~~g~---eAl~-~~~~~~~Dlvll-Di~mP~~~G 68 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAMLIE-------DTLCELGHE-----VAATASRMQ---EALD-IARKGQFDIAII-DVNLDGEPS 68 (123)
T ss_dssp CCCCCEEEESSSTTTSHHHH-------HHHHHHCCC-----CCBCSCCHH---HHHH-HHHHCCSSEEEE-CSSSSSCCS
T ss_pred CCCCEEEEEeCCHHHHHHHH-------HHHHHCCCE-----EEEEECCHH---HHHH-HHHhCCCCEEEE-ecCCCCCCH
Confidence 56789999986544 34333 334556764 221 22222 2333 346678997765 444555443
Q ss_pred hHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhhC
Q 027801 151 HYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG 192 (218)
Q Consensus 151 H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Rag 192 (218)
++ ++ +-|.+ .++||+ ++|..+.++...|+|
T Consensus 69 -~e-l~----~~lr~----~~ipvI--~lTa~~~~~~~~~~g 98 (123)
T 2lpm_A 69 -YP-VA----DILAE----RNVPFI--FATGYGSKGLDTRYS 98 (123)
T ss_dssp -HH-HH----HHHHH----TCCSSC--CBCTTCTTSCCSSSC
T ss_pred -HH-HH----HHHHc----CCCCEE--EEecCccHHHHHhCC
Confidence 34 23 33332 479987 477765544444554
No 381
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=21.27 E-value=1.1e+02 Score=27.94 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=50.5
Q ss_pred HHHHHHCCCCCCCeEEEEeCCcch-HHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHH------HHhchhc
Q 027801 98 LETFKKYSVKEENIDVVWVPGSFE-IGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGV------LSAGVNS 170 (218)
Q Consensus 98 ~~~L~~~Gv~~e~I~vv~VPGA~E-LP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gL------m~lsL~~ 170 (218)
...|++.|.. -++...||.-.| |=-+++.+++ ++|.||+-|-+=-|+ +|++-+.+.+.+ -.+.++=
T Consensus 214 ~~~l~~~G~~--v~~~~iv~Dd~~~i~~~l~~a~~--~~DlVittGG~s~g~---~D~t~~al~~~lg~~~~f~~v~~~P 286 (419)
T 2fts_A 214 LATIQEHGYP--TINLGIVGDNPDDLLNALNEGIS--RADVIITSGGVSMGE---KDYLKQVLDIDLHAQIHFGRVFMKP 286 (419)
T ss_dssp HHHHHTTTCC--EEEEEEECSSHHHHHHHHHHHHH--HCSEEEEESCCSSSC---CHHHHHHHHTTTCCEEEESEEECBS
T ss_pred HHHHHHCCCE--EEEEeecCCCHHHHHHHHHHHHh--cCCEEEEcCCCcCCC---cccHHHHHHHHcCCceEEeEEecCC
Confidence 3456778874 567778998876 4445555543 499999999984444 666666653332 3455667
Q ss_pred CCceEEEEcC
Q 027801 171 GVPCIFGVLT 180 (218)
Q Consensus 171 ~vPVifGVLT 180 (218)
+.|.++|.+.
T Consensus 287 G~p~~~g~~~ 296 (419)
T 2fts_A 287 GLPTTFATLD 296 (419)
T ss_dssp CTTCEEEEEE
T ss_pred CCceEEEEEe
Confidence 7889988763
No 382
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=21.27 E-value=1.1e+02 Score=26.63 Aligned_cols=53 Identities=13% Similarity=0.045 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHH
Q 027801 92 LLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVAN 157 (218)
Q Consensus 92 ~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~ 157 (218)
.++.-+.+.|+..|++ ++..||--|- .+..|++.+..|+|+ -|+.+=+.+++.
T Consensus 129 ~~~~~~~~lL~~~gi~-----~i~apgeAEA--~lA~la~~g~~~~I~------S~D~Dllql~~~ 181 (336)
T 1rxw_A 129 YIVDSAKTLLSYMGIP-----FVDAPSEGEA--QAAYMAAKGDVEYTG------SQDYDSLLFGSP 181 (336)
T ss_dssp HHHHHHHHHHHHTTCC-----EEECSSCHHH--HHHHHHHTTSSSEEE------CSSSHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCC-----EEEcCchHHH--HHHHHHHcCCeeEEE------cCCCCcceecCC
Confidence 4788899999999874 8899994476 344555666666654 355555555554
No 383
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=21.21 E-value=2.6e+02 Score=25.95 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=60.5
Q ss_pred HHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 99 ETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 99 ~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
+.|.+.|+++.-+.+ |+|.-| +.+.|.++.++|.|.- .|.|.--..|+..++..+..+.++.|=---.-|
T Consensus 198 ~ll~eaGlP~gvv~v--v~g~~~---~g~~L~~~p~vd~I~F-----TGS~~~G~~i~~~aa~~lk~v~lElGGk~p~IV 267 (517)
T 3r31_A 198 EILIEAGLPKGLFNV--IQGDRD---TGPLLVNHPDVAKVSL-----TGSVPTGRKVAAAAAGHLKHVTMELGGKSPMIV 267 (517)
T ss_dssp HHHHHTTCCTTSEEE--CCCCTT---HHHHHHTCTTEEEEEE-----ESCHHHHHHHHHHHHHTTCEEEEECCCCEEEEE
T ss_pred HHHHHhCcCcccEEE--EECCHH---HHHHHHhCCCcCEEec-----cCCHHHHHHHHHHhhcCCCcEEEEcCCcCeEEE
Confidence 556778887655544 577434 3466777777888764 567777778888887777777776553333335
Q ss_pred cCCCCHHHHHHhhC-CCCCCcHH
Q 027801 179 LTCDNMDQALNRAG-GKSGNKGA 200 (218)
Q Consensus 179 LT~~n~eQA~~Rag-~k~gnKG~ 200 (218)
+-.-|.++|.+++- ++..|-|.
T Consensus 268 ~~dADl~~Aa~~i~~~~f~n~GQ 290 (517)
T 3r31_A 268 FDDADIESAVGGAMLGNFYSSGQ 290 (517)
T ss_dssp CTTSCHHHHHHHHHHHHTSCCHH
T ss_pred ecCCCHHHHHHHHHHHHhcCCCc
Confidence 55568888877743 45667665
No 384
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=21.05 E-value=3.1e+02 Score=24.02 Aligned_cols=63 Identities=11% Similarity=-0.057 Sum_probs=42.0
Q ss_pred CCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHH----HHHhhhcCCccEEEEE
Q 027801 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVV----AQQLGKSGKYTAVLCI 141 (218)
Q Consensus 75 ~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~a----ak~L~~~~~yDaVIaL 141 (218)
.-|||+|.+.-...+. +-..|..+.++..+.+. ++.+.++ |+|.=|-- ++.|++ .+.|+|.+.
T Consensus 149 ~~kIGfVgg~~~p~v~-~~~~GF~~G~k~~np~i-~v~~~~~-g~~~d~~kg~~~a~~l~~-~G~DvIf~~ 215 (356)
T 3s99_A 149 KGIAGYIGSVPVPEVV-QGINSFMLGAQSVNPDF-RVKVIWV-NSWFDPGKEADAAKALID-QGVDIITQH 215 (356)
T ss_dssp SCEEEEEECCCCHHHH-HHHHHHHHHHHTTCTTC-EEEEEEC-SSSCCHHHHHHHHHHHHH-TTCSEEEES
T ss_pred CCEEEEECCCccHHHH-HHHHHHHHHHHHHCCCC-EEEEEEC-CCCCChHHHHHHHHHHHh-CCCcEEEEC
Confidence 4699999987666655 46799999999887642 3555555 66544433 344444 468988764
No 385
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=20.98 E-value=2.4e+02 Score=24.93 Aligned_cols=67 Identities=16% Similarity=0.064 Sum_probs=37.1
Q ss_pred CCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHH--------HHHHHHHHHhchhcCCceEE--EEcCCCCHHH
Q 027801 117 PGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVA--------NSAASGVLSAGVNSGVPCIF--GVLTCDNMDQ 186 (218)
Q Consensus 117 PGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va--------~~vs~gLm~lsL~~~vPVif--GVLT~~n~eQ 186 (218)
++... |-.++.+. ..+.|+|++ |. .|.+ |+.... -....-+.++.-..++||+- ||-+.++..+
T Consensus 200 ~~v~~-~~~a~~a~-~~Gad~I~v-g~--~~G~-~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ 273 (404)
T 1eep_A 200 GNIVT-KEAALDLI-SVGADCLKV-GI--GPGS-ICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVK 273 (404)
T ss_dssp EEECS-HHHHHHHH-TTTCSEEEE-CS--SCST-TSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHH
T ss_pred cCCCc-HHHHHHHH-hcCCCEEEE-CC--CCCc-CcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHH
Confidence 44333 34455554 456999998 62 3333 221110 01122222322246899998 8988899999
Q ss_pred HHH
Q 027801 187 ALN 189 (218)
Q Consensus 187 A~~ 189 (218)
+++
T Consensus 274 ala 276 (404)
T 1eep_A 274 AIA 276 (404)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 386
>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A
Probab=20.95 E-value=1e+02 Score=25.83 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=17.9
Q ss_pred CeEEEEeCCcc-------hHHHHHHHh---hhcCCccEEEEEee
Q 027801 110 NIDVVWVPGSF-------EIGVVAQQL---GKSGKYTAVLCIGA 143 (218)
Q Consensus 110 ~I~vv~VPGA~-------ELP~aak~L---~~~~~yDaVIaLG~ 143 (218)
.+.++-||||| .||--++.+ .+.++.|-|+|+-+
T Consensus 71 kVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~kGvd~I~ciSV 114 (199)
T 4h86_A 71 KVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTV 114 (199)
T ss_dssp EEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHSCCCEEEEEES
T ss_pred eEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhcCCcEEEEEEc
Confidence 35566677765 254333332 24456666666644
No 387
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=20.82 E-value=87 Score=29.13 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=24.1
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHH
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak 127 (218)
+.-.+.|+++||+ .++-+||...+|+.-.
T Consensus 16 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~a 44 (590)
T 1ybh_A 16 DILVEALERQGVE----TVFAYPGGASMEIHQA 44 (590)
T ss_dssp HHHHHHHHTTTCC----EEEECCCGGGHHHHHH
T ss_pred HHHHHHHHHcCCC----EEEEcCCCchHHHHHH
Confidence 4557788999997 7999999999998744
No 388
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=20.77 E-value=62 Score=25.48 Aligned_cols=59 Identities=8% Similarity=-0.024 Sum_probs=35.5
Q ss_pred CCCCCEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEe
Q 027801 72 KNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIG 142 (218)
Q Consensus 72 ~~~~~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG 142 (218)
+.++.|||++....+.... .+.+...|..+ +.++..++.. +-+++.| ..+++|+++.=.
T Consensus 134 dL~g~~v~v~~g~~~~~~l-------~~~~~~~g~~~-~~~~~~~~~~---~~~~~~l-~~G~vDa~~~~~ 192 (259)
T 4dz1_A 134 ELNKYSIGYPRGMAYSDLI-------KNDLEPKGYYS-LSKVKLYPTY---NETMADL-KNGNLDLAFIEE 192 (259)
T ss_dssp GGGGSCEEEETTSTHHHHH-------HHHTGGGTSCC-GGGCEEESSH---HHHHHHH-HHTSCSEEEEEH
T ss_pred HhCCCEEEEeCCcHHHHHH-------HHhcccccccc-cceeEecCCH---HHHHHHH-HcCCCCEEEecH
Confidence 4467899998776655433 22345556542 2456667753 3344444 679999988643
No 389
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=20.73 E-value=1e+02 Score=25.34 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=29.6
Q ss_pred CCEEEEEEcccC-HHHHHHHHHHHHHHHHHCCCCCCCeEEEEe
Q 027801 75 GLRFALVVARFN-ELVTKLLLEGALETFKKYSVKEENIDVVWV 116 (218)
Q Consensus 75 ~~RIaIV~Srfn-~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~V 116 (218)
++||+||.+.=+ +-.+..|++.+.+.|++.|.+ ++++.+
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~e---v~~~dL 40 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCT---VTVSDL 40 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCE---EEEEET
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCE---EEEEEh
Confidence 368888887665 457889999999999888864 666665
No 390
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=20.62 E-value=29 Score=27.51 Aligned_cols=90 Identities=14% Similarity=0.191 Sum_probs=47.3
Q ss_pred CCCEEEEEEcc-cCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcc------hH-HHHHHH-hh--hcCCccEEEEEe
Q 027801 74 EGLRFALVVAR-FNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSF------EI-GVVAQQ-LG--KSGKYTAVLCIG 142 (218)
Q Consensus 74 ~~~RIaIV~Sr-fn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~------EL-P~aak~-L~--~~~~yDaVIaLG 142 (218)
...||+|+... |... =+.+..+.|.+.|+ +++++...|-- -+ ++.... +. ....||++|..|
T Consensus 22 ~~~kV~ill~~g~~~~----e~~~~~~~l~~ag~---~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpG 94 (193)
T 1oi4_A 22 LSKKIAVLITDEFEDS----EFTSPADEFRKAGH---EVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPG 94 (193)
T ss_dssp CCCEEEEECCTTBCTH----HHHHHHHHHHHTTC---EEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECC
T ss_pred cCCEEEEEECCCCCHH----HHHHHHHHHHHCCC---EEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECC
Confidence 45689999874 3321 12466778888886 46777655421 11 111111 11 124799999988
Q ss_pred eeeeCCchhHHHHHHHHHHHHHHhchhcCCceE
Q 027801 143 AVVRGDTTHYDAVANSAASGVLSAGVNSGVPCI 175 (218)
Q Consensus 143 ~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVi 175 (218)
- .| -.++..+.-...+.+-..+.++||.
T Consensus 95 G--~~---~~~l~~~~~l~~~l~~~~~~gk~i~ 122 (193)
T 1oi4_A 95 G--HS---PDYLRGDNRFVTFTRDFVNSGKPVF 122 (193)
T ss_dssp B--TH---HHHHTTSHHHHHHHHHHHHTTCCEE
T ss_pred C--cC---HHHhhhCHHHHHHHHHHHHcCCEEE
Confidence 6 23 1333323333334444455688865
No 391
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=20.60 E-value=1e+02 Score=25.10 Aligned_cols=55 Identities=9% Similarity=0.063 Sum_probs=31.9
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeee
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAV 144 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~V 144 (218)
+||++|.-..++... .-.+.|++.|++ ++++.+--.-++|- +-.+||++|..|--
T Consensus 1 m~i~vi~h~~~e~~g-----~~~~~l~~~g~~---~~~~~~~~~~~~p~------~~~~~d~lii~GGp 55 (236)
T 3l7n_A 1 MRIHFILHETFEAPG-----AYLAWAALRGHD---VSMTKVYRYEKLPK------DIDDFDMLILMGGP 55 (236)
T ss_dssp CEEEEEECCTTSCCH-----HHHHHHHHTTCE---EEEEEGGGTCCCCS------CGGGCSEEEECCCS
T ss_pred CeEEEEeCCCCCCch-----HHHHHHHHCCCe---EEEEeeeCCCCCCC------CccccCEEEECCCC
Confidence 478888765554332 122456677874 77777621112231 12479999999964
No 392
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=20.59 E-value=2.3e+02 Score=25.83 Aligned_cols=83 Identities=22% Similarity=0.240 Sum_probs=52.4
Q ss_pred HHHHHCCCCCCCeEEEEeCC-cchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHH-HHHHHHhchhcCCceEE
Q 027801 99 ETFKKYSVKEENIDVVWVPG-SFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSA-ASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 99 ~~L~~~Gv~~e~I~vv~VPG-A~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~v-s~gLm~lsL~~~vPVif 176 (218)
+.|.+.|+++.-+.+ |+| .-| +.+.|.++.++|.|.- .|.|.--..|+..+ +..+..+.++.|=---.
T Consensus 190 ~l~~~aGlP~gvv~v--v~g~~~~---~~~~L~~~p~vd~v~f-----TGS~~~g~~i~~~a~a~~l~~v~lElGGk~p~ 259 (490)
T 2ve5_A 190 EIYTEAGVPDGVFNV--LTGSGRE---VGQWLTEHPLIEKISF-----TGGTSTGKKVMASASSSSLKEVTMELGGKSPL 259 (490)
T ss_dssp HHHHHHTCCTTSEEE--CCSCTTT---HHHHHHHCTTCCEEEE-----ESCHHHHHHHHHHHHHHHCCEEEEECCCCCEE
T ss_pred HHHHHhCcCcCeEEE--EeCCChH---HHHHHHhCCCcCEEEE-----eCCcHHHHHHHHhchhccccceEEEcCCCcee
Confidence 456677887665555 455 223 4456667778898764 56677777777777 66666666665432223
Q ss_pred EEcCCCCHHHHHHhh
Q 027801 177 GVLTCDNMDQALNRA 191 (218)
Q Consensus 177 GVLT~~n~eQA~~Ra 191 (218)
-|+-.-|.++|.+++
T Consensus 260 iV~~dADl~~Aa~~i 274 (490)
T 2ve5_A 260 IIFPDADLDRAADIA 274 (490)
T ss_dssp EECTTSCHHHHHHHH
T ss_pred EECCCCCHHHHHHHH
Confidence 355556788876653
No 393
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=20.54 E-value=90 Score=28.45 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=23.3
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHH
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVA 126 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aa 126 (218)
+.-.+.|+++||. .++-+||...+|+.-
T Consensus 6 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~~ 33 (528)
T 1q6z_A 6 GTTYELLRRQGID----TVFGNPGSNALPFLK 33 (528)
T ss_dssp HHHHHHHHHTTCC----EEEECCCGGGHHHHT
T ss_pred HHHHHHHHHCCCC----EEEECCCcchHHHHH
Confidence 4456788999997 799999999999763
No 394
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=20.41 E-value=4.8e+02 Score=23.55 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=47.8
Q ss_pred HHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEE
Q 027801 97 ALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIF 176 (218)
Q Consensus 97 A~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVif 176 (218)
..+.+.+.|+++.-+.+ |+|.= +-+.+.|+++.++|.|+.-|- |. +++...++.+|| .
T Consensus 158 l~~~~~~aG~P~gvv~v--v~g~~--~~~~~~L~~~~~vd~I~fTGs-----~~------------v~~~a~~~~kpv-l 215 (464)
T 3k9d_A 158 ISEAAEKAGCPKGAISC--MTVPT--IQGTDQLMKHKDTAVILATGG-----SA------------MVKAAYSSGTPA-I 215 (464)
T ss_dssp HHHHHHHTTCCTTSEEE--CSSCC--HHHHHHHHHCTTEEEEEECSC-----HH------------HHHHHTTSSSCE-E
T ss_pred HHHHHHHhCCCCCeEEE--EeCCC--HHHHHHHHhCCCCCEEEEeCC-----hH------------HHHHHHhcCCcE-E
Confidence 34667889998655555 55520 224566777778999877654 43 234444567887 4
Q ss_pred EEc---------CCCCHHHHHHhhC-CCCCCcH
Q 027801 177 GVL---------TCDNMDQALNRAG-GKSGNKG 199 (218)
Q Consensus 177 GVL---------T~~n~eQA~~Rag-~k~gnKG 199 (218)
+.. -.-|.++|.+++- ++..|-|
T Consensus 216 elG~G~~p~iV~~dADl~~Aa~~i~~~~~~n~G 248 (464)
T 3k9d_A 216 GVGPGNGPAFIERSANIPRAVKHILDSKTFDNG 248 (464)
T ss_dssp EBCCCCCEEEECTTSCHHHHHHHHHHHHTGGGG
T ss_pred eeCCCCCeEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 443 2346788876643 2344444
No 395
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=20.31 E-value=1.5e+02 Score=27.64 Aligned_cols=29 Identities=10% Similarity=0.311 Sum_probs=24.2
Q ss_pred HHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHH
Q 027801 95 EGALETFKKYSVKEENIDVVWVPGSFEIGVVAQ 127 (218)
Q Consensus 95 ~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak 127 (218)
+.-.+.|+++||. .++-+||...+|+.-.
T Consensus 15 ~~l~~~L~~~GV~----~vfg~PG~~~~~l~da 43 (603)
T 4feg_A 15 AAVIKVLEAWGVD----HLYGIPGGSINSIMDA 43 (603)
T ss_dssp HHHHHHHHHTTCC----EEEECCCGGGHHHHHH
T ss_pred HHHHHHHHHCCCC----EEEEeCCCchHHHHHH
Confidence 4456789999997 7999999999999844
No 396
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=20.06 E-value=2.9e+02 Score=20.99 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=40.0
Q ss_pred CEEEEEEcccCHHHHHHHHHHHHHHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHH
Q 027801 76 LRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAV 155 (218)
Q Consensus 76 ~RIaIV~Srfn~~It~~Ll~gA~~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~V 155 (218)
++|+|+.-.-|. ..-.+.|++.|+. +.++ |-. + .+ ..||++|.-|- .-.+.+..
T Consensus 3 p~Igi~~~~~~~-------~~~~~~l~~~G~~---~~~~--~~~-~------~l---~~~dglil~GG----~~~~~~~~ 56 (191)
T 2ywd_A 3 GVVGVLALQGDF-------REHKEALKRLGIE---AKEV--RKK-E------HL---EGLKALIVPGG----ESTTIGKL 56 (191)
T ss_dssp CCEEEECSSSCH-------HHHHHHHHTTTCC---CEEE--CSG-G------GG---TTCSEEEECSS----CHHHHHHH
T ss_pred cEEEEEecCCch-------HHHHHHHHHCCCE---EEEe--CCh-h------hh---ccCCEEEECCC----ChhhhHHh
Confidence 578988754332 2346777888874 3343 321 1 12 46999988774 11233332
Q ss_pred H-HHHHHHHHHhchhcC-CceEEEE
Q 027801 156 A-NSAASGVLSAGVNSG-VPCIFGV 178 (218)
Q Consensus 156 a-~~vs~gLm~lsL~~~-vPVifGV 178 (218)
. +.-...+.+-.++.+ +||. ||
T Consensus 57 ~~~~~~~~~i~~~~~~~~~Pil-Gi 80 (191)
T 2ywd_A 57 AREYGIEDEVRKRVEEGSLALF-GT 80 (191)
T ss_dssp HHHTTHHHHHHHHHHTTCCEEE-EE
T ss_pred hhhhhHHHHHHHHHHCCCCeEE-EE
Confidence 2 111223334444668 9964 54
No 397
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=20.05 E-value=64 Score=27.56 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=42.0
Q ss_pred CcchHHHH---HHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEEcCCCCHHHHHHhh
Q 027801 118 GSFEIGVV---AQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRA 191 (218)
Q Consensus 118 GA~ELP~a---ak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGVLT~~n~eQA~~Ra 191 (218)
|..+.+.. ++.+++ . .||++++|.- ||..+. ..+=-..+.+...+ .+||+.|+-. ++.+++++.+
T Consensus 14 g~iD~~~l~~lv~~li~-~-v~gl~v~Gtt--GE~~~L---s~~Er~~v~~~~~~-rvpviaGvg~-~~t~~ai~la 81 (283)
T 2pcq_A 14 GRLDEEAFRELAQALEP-L-VDGLLVYGSN--GEGVHL---TPEERARGLRALRP-RKPFLVGLME-ETLPQAEGAL 81 (283)
T ss_dssp CCBCHHHHHHHHHHHGG-G-SSCCEETCTT--TTGGGS---CHHHHHHHHHTCCC-SSCCEEEECC-SSHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHh-h-CCEEEECCcC--cCchhc---CHHHHHHHHHHHHh-CCcEEEeCCC-CCHHHHHHHH
Confidence 45555433 344444 4 9999988875 666543 33444556666666 9999999876 5666666654
No 398
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=20.02 E-value=5e+02 Score=23.70 Aligned_cols=91 Identities=19% Similarity=0.158 Sum_probs=59.8
Q ss_pred HHHHHCCCCCCCeEEEEeCCcchHHHHHHHhhhcCCccEEEEEeeeeeCCchhHHHHHHHHHHHHHHhchhcCCceEEEE
Q 027801 99 ETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGV 178 (218)
Q Consensus 99 ~~L~~~Gv~~e~I~vv~VPGA~ELP~aak~L~~~~~yDaVIaLG~VIrGeT~H~e~Va~~vs~gLm~lsL~~~vPVifGV 178 (218)
+.+.+.|+++.-+.+ |+|.- +-+-+ |.++.++|.|.- .|.|.--..|+..+++.+..+.++.|=---.-|
T Consensus 171 ~l~~~aGlP~gvv~v--v~g~~--~~~~~-L~~~p~vd~I~f-----TGS~~~G~~i~~~aa~~lk~v~lELGGk~p~iV 240 (484)
T 3ros_A 171 KIIKRAGAPEGSLIN--LYPSY--DQLAD-IIADPRIQGVAL-----TGSERGGSAVAEAAGKNLKKSTMELGGNDAFIV 240 (484)
T ss_dssp HHHHHHTCCTTSEEE--ECCCH--HHHHH-HHTSTTEEEEEE-----ESCHHHHHHHHHHHHHTTCEEEEECCCCCEEEE
T ss_pred HHHHHhCcCcCeEEE--EeCCh--HHHHH-HHhCCCcCEEEE-----ECCHHHHHHHHHHHhccCCceEeecCCCCccee
Confidence 456677887655555 56632 22344 777778888764 567777788888888777777777553333335
Q ss_pred cCCCCHHHHHHhhC-CCCCCcH
Q 027801 179 LTCDNMDQALNRAG-GKSGNKG 199 (218)
Q Consensus 179 LT~~n~eQA~~Rag-~k~gnKG 199 (218)
+-.-|.++|.+++- ++..|-|
T Consensus 241 ~~dADl~~Aa~~i~~~~~~n~G 262 (484)
T 3ros_A 241 LDDADPQVLRNVLNDARTYNDG 262 (484)
T ss_dssp CTTCCHHHHHHHHTTTTTGGGG
T ss_pred CCCCCHHHHHHHHHHHHhcCCC
Confidence 66678999988764 4566666
Done!