RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 027801
(218 letters)
>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 155
Score = 161 bits (408), Expect = 3e-51
Identities = 118/156 (75%), Positives = 141/156 (90%), Gaps = 1/156 (0%)
Query: 63 VRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEI 122
+ L G++TK + RFA+VVARFNE VT+ L+EGAL+TFKKYSV E+ DVVWVPG++E+
Sbjct: 1 MNELEGYVTKAQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDI-DVVWVPGAYEL 59
Query: 123 GVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCD 182
GV AQ LGKSGKY A++C+GAVV+GDT+HYDAV NSA+SGVLSAG+NSGVPC+FGVLTCD
Sbjct: 60 GVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCD 119
Query: 183 NMDQALNRAGGKSGNKGAEAALTAIEMASLFEHHLK 218
NMDQA+NRAGGK+GNKGAE+ALTAIEMASLFEHHLK
Sbjct: 120 NMDQAINRAGGKAGNKGAESALTAIEMASLFEHHLK 155
>d1c41a_ c.16.1.1 (A:) Lumazine synthase {Rice blast fungus
(Magnaporthe grisea) [TaxId: 148305]}
Length = 195
Score = 152 bits (385), Expect = 3e-47
Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 38/177 (21%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLG--- 130
LR +V AR+NE + + LL G VKE NI V VPGS+E+ + Q+L
Sbjct: 10 SALRIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRLYSAS 69
Query: 131 ---------------------------------KSGKYTAVLCIGAVVRGDTTHYDAVAN 157
+G + A++ IG +++G+T H++ +A+
Sbjct: 70 QLQTPSSGPSLSAGDLLGSSTTDLTALPTTTASSTGPFDALIAIGVLIKGETMHFEYIAD 129
Query: 158 SAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGKSG--NKGAEAALTAIEMASL 212
S + G++ +++GVP IFGVLT DQA RAG G N G + L A+EM
Sbjct: 130 SVSHGLMRVQLDTGVPVIFGVLTVLTDDQAKARAGVIEGSHNHGEDWGLAAVEMGVR 186
>d1ejba_ c.16.1.1 (A:) Lumazine synthase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 168
Score = 143 bits (361), Expect = 5e-44
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 9/150 (6%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQL---- 129
+R ++ AR+N ++ L++GA+E V+E NI + VPGS+E+ ++
Sbjct: 15 SKIRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQ 74
Query: 130 -GKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQAL 188
V+ IG +++G T H++ +++S +++ +P IFG+LTC +QAL
Sbjct: 75 AKLGKPLDVVIPIGVLIKGSTMHFEYISDSTTHALMNLQEKVDMPVIFGLLTCMTEEQAL 134
Query: 189 NRAGGKSG----NKGAEAALTAIEMASLFE 214
RAG N G + A+EMA F
Sbjct: 135 ARAGIDEAHSMHNHGEDWGAAAVEMAVKFG 164
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId:
63363]}
Length = 154
Score = 140 bits (355), Expect = 3e-43
Identities = 64/141 (45%), Positives = 95/141 (67%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSG 133
EGLRF +V +RFN + L+EGA++ ++ +EE+I +V VPGS+EI V A +L +
Sbjct: 11 EGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKE 70
Query: 134 KYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGG 193
AV+ IG ++RG T H+D +A+ + G+ + + P FGV+T D ++QA+ RAG
Sbjct: 71 DIDAVIAIGVLIRGATPHFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERAGT 130
Query: 194 KSGNKGAEAALTAIEMASLFE 214
K GNKG EAAL+AIEMA+LF+
Sbjct: 131 KHGNKGWEAALSAIEMANLFK 151
>d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId:
1423]}
Length = 154
Score = 139 bits (352), Expect = 7e-43
Identities = 67/139 (48%), Positives = 98/139 (70%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSG 133
GL+ +VV RFN+ +T LL GA + ++ V +IDV WVPG+FEI A+++ ++
Sbjct: 11 TGLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETK 70
Query: 134 KYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGG 193
KY A++ +G V+RG TTHYD V N AA G+ A +GVP IFG++T +N++QA+ RAG
Sbjct: 71 KYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAGT 130
Query: 194 KSGNKGAEAALTAIEMASL 212
K+GNKG + A++AIEMA+L
Sbjct: 131 KAGNKGVDCAVSAIEMANL 149
>d1kz1a_ c.16.1.1 (A:) Lumazine synthase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 150
Score = 138 bits (350), Expect = 1e-42
Identities = 54/139 (38%), Positives = 82/139 (58%), Gaps = 2/139 (1%)
Query: 74 EGLRFALVVARFNELVTKLLLEGALETF-KKYSVKEENIDVVWVPGSFEIGVVAQQLGKS 132
LR +V AR N + L++GA+ET +K+ VK ENID+ VPGS+E+ +
Sbjct: 8 PELRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIAR 67
Query: 133 GKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAG 192
Y AV+ IG +++G T H++ ++ + G++ G++SGVP I G+LT N +QAL RAG
Sbjct: 68 NTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALYRAG 127
Query: 193 GKSG-NKGAEAALTAIEMA 210
G N G + A+EM
Sbjct: 128 LNGGHNHGNDWGSAAVEMG 146
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId:
235]}
Length = 148
Score = 133 bits (337), Expect = 1e-40
Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 75 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGK 134
+ A + AR++ + + + + +++ VPG++EI + A+ L ++G+
Sbjct: 2 SFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGR 61
Query: 135 YTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGVPCIFGVLTCDNMDQALNRAGGK 194
Y A++ V+ G +D VA + +G++ + + VP + VLT + ++
Sbjct: 62 YAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFF 121
Query: 195 SGN---KGAEAALTAIEMASLFE 214
+ KG EAA A+++ S
Sbjct: 122 HAHFKVKGVEAAHAALQIVSERS 144
>d1pyfa_ c.1.7.1 (A:) Putative oxidoreductase IolS {Bacillus
subtilis [TaxId: 1423]}
Length = 311
Score = 28.0 bits (61), Expect = 0.78
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 128 QLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGVNSGV 172
+LGKS + +G G Y + ++ + +GV
Sbjct: 4 KLGKSDLQVFPIGLGTNAVGGHNLYPNLNEETGKELVREAIRNGV 48
>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional
pleiotropic repressor CodY, C-terminal domain {Bacillus
subtilis [TaxId: 1423]}
Length = 91
Score = 25.9 bits (57), Expect = 1.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 46 QIAIERKERLSFVQTEAVRHLTGFLTKNEGLRFALVVA 83
Q+AI LS+ + EA+ H+ L NEGL A +A
Sbjct: 7 QMAISS---LSYSELEAIEHIFEELDGNEGLLVASKIA 41
>d2bw0a1 b.46.1.1 (A:204-307) 10-formyltetrahydrofolate
dehydrogenase domain 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 104
Score = 24.7 bits (53), Expect = 4.4
Identities = 10/59 (16%), Positives = 18/59 (30%)
Query: 21 FINGFSPKPTSMSFSRSSSLKGFGTQIAIERKERLSFVQTEAVRHLTGFLTKNEGLRFA 79
+I G P + + + L F + + H G +TK + F
Sbjct: 20 WIRGNDKVPGAWTEACEQKLTFFNSTLNTSGLVPEGDALPIPGAHRPGVVTKAGLILFG 78
>d1k0ra4 d.202.1.1 (A:-4-99) Transcription factor NusA, N-terminal
domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 104
Score = 24.7 bits (54), Expect = 5.6
Identities = 5/37 (13%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 94 LEGALET-FKKYSVKEENIDVVWVPGSFEIGVVAQQL 129
++ AL T ++ + + + + + V+A++
Sbjct: 31 IKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIARET 67
>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens),
calgranulin C, s100a12 [TaxId: 9606]}
Length = 87
Score = 24.0 bits (52), Expect = 8.1
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 90 TKLL--LEGALETFKKYSVKEEN 110
TKL LEG + F +YSV++ +
Sbjct: 1 TKLEEHLEGIVNIFHQYSVRKGH 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.370
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 726,098
Number of extensions: 30997
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 13
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)