Query 027802
Match_columns 218
No_of_seqs 243 out of 1621
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 15:24:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03516 ppisom_GldI peptidyl 99.9 1E-24 2.3E-29 175.9 11.8 135 74-217 12-154 (177)
2 COG0545 FkpA FKBP-type peptidy 99.9 7.4E-25 1.6E-29 177.1 9.7 93 123-217 91-183 (205)
3 PRK11570 peptidyl-prolyl cis-t 99.9 2.4E-21 5.2E-26 159.9 10.4 96 120-217 89-184 (206)
4 KOG0544 FKBP-type peptidyl-pro 99.8 4.4E-21 9.6E-26 136.3 8.4 84 134-217 2-86 (108)
5 KOG0552 FKBP-type peptidyl-pro 99.8 2.9E-20 6.2E-25 153.6 9.8 88 129-217 116-205 (226)
6 PRK10902 FKBP-type peptidyl-pr 99.8 5.6E-20 1.2E-24 157.2 10.8 98 118-217 131-228 (269)
7 KOG0549 FKBP-type peptidyl-pro 99.8 8.2E-20 1.8E-24 145.1 9.9 86 132-217 67-154 (188)
8 PF00254 FKBP_C: FKBP-type pep 99.7 3.3E-17 7.2E-22 118.7 8.4 71 147-217 4-74 (94)
9 PRK15095 FKBP-type peptidyl-pr 99.7 7.9E-17 1.7E-21 127.7 8.8 72 147-218 4-75 (156)
10 COG1047 SlpA FKBP-type peptidy 99.6 9.4E-15 2E-19 116.4 9.0 72 147-218 2-73 (174)
11 PRK10737 FKBP-type peptidyl-pr 99.5 6.6E-14 1.4E-18 114.4 8.8 71 147-218 2-72 (196)
12 KOG0543 FKBP-type peptidyl-pro 99.3 4.9E-11 1.1E-15 105.7 11.1 81 132-216 83-166 (397)
13 TIGR00115 tig trigger factor. 98.8 1.4E-08 3E-13 92.0 8.5 68 146-216 145-212 (408)
14 PRK01490 tig trigger factor; P 98.7 4E-08 8.7E-13 89.7 8.7 68 146-216 156-223 (435)
15 COG0544 Tig FKBP-type peptidyl 98.6 5.6E-08 1.2E-12 88.8 6.9 65 148-215 158-222 (441)
16 KOG0543 FKBP-type peptidyl-pro 98.6 3.9E-08 8.5E-13 87.4 4.5 63 141-204 1-64 (397)
17 KOG0545 Aryl-hydrocarbon recep 98.0 2.3E-06 4.9E-11 72.1 2.1 78 132-209 9-90 (329)
18 PRK10081 entericidin B membran 79.7 1.8 4E-05 27.2 2.3 25 58-83 2-26 (48)
19 PF08139 LPAM_1: Prokaryotic m 71.8 4.7 0.0001 21.8 2.2 19 58-80 6-24 (25)
20 PRK09973 putative outer membra 69.5 6 0.00013 28.1 3.0 26 58-85 1-26 (85)
21 PRK15396 murein lipoprotein; P 62.3 10 0.00023 26.4 3.1 26 58-85 1-27 (78)
22 PRK11548 outer membrane biogen 61.3 23 0.00051 26.2 5.1 22 58-81 1-22 (113)
23 PF05481 Myco_19_kDa: Mycobact 58.8 3.4 7.5E-05 32.8 0.2 26 58-83 1-26 (160)
24 PRK09810 entericidin A; Provis 58.6 9 0.0002 23.3 2.0 22 58-83 2-23 (41)
25 TIGR02122 TRAP_TAXI TRAP trans 56.5 8.4 0.00018 32.9 2.3 24 58-81 1-24 (320)
26 PHA02122 hypothetical protein 54.8 21 0.00046 23.2 3.3 20 149-169 39-58 (65)
27 PF13627 LPAM_2: Prokaryotic l 50.0 17 0.00036 19.5 1.9 13 72-84 8-20 (24)
28 PRK02998 prsA peptidylprolyl i 49.9 13 0.00029 32.0 2.4 21 185-205 187-207 (283)
29 PRK11653 hypothetical protein; 49.3 16 0.00035 30.7 2.7 28 57-84 11-42 (225)
30 COG5510 Predicted small secret 46.2 20 0.00044 22.0 2.1 22 58-80 2-23 (44)
31 PRK00226 greA transcription el 46.1 28 0.0006 27.3 3.5 24 188-211 123-146 (157)
32 PF07172 GRP: Glycine rich pro 44.9 19 0.00041 26.0 2.2 9 69-77 12-20 (95)
33 PRK13792 lysozyme inhibitor; P 43.1 20 0.00044 27.4 2.2 24 58-84 1-24 (127)
34 PF12262 Lipase_bact_N: Bacter 42.7 19 0.0004 31.1 2.2 24 58-84 1-24 (268)
35 PF05984 Cytomega_UL20A: Cytom 39.7 32 0.0007 24.3 2.6 22 58-79 1-22 (100)
36 COG4939 Major membrane immunog 38.0 1.2E+02 0.0025 23.4 5.5 19 148-166 54-72 (147)
37 PRK10540 lipoprotein; Provisio 37.8 35 0.00077 23.4 2.5 23 58-81 4-26 (72)
38 PRK10523 lipoprotein involved 36.6 1.5E+02 0.0033 25.0 6.7 24 58-83 2-25 (234)
39 COG2980 RlpB Rare lipoprotein 36.4 25 0.00054 28.4 1.8 22 58-82 1-22 (178)
40 PF07076 DUF1344: Protein of u 36.1 77 0.0017 21.0 3.8 38 129-168 19-56 (61)
41 COG5567 Predicted small peripl 35.9 37 0.0008 22.1 2.2 11 74-84 15-25 (58)
42 PF01346 FKBP_N: Domain amino 35.1 14 0.0003 27.4 0.3 21 119-139 104-124 (124)
43 PF09122 DUF1930: Domain of un 34.7 59 0.0013 21.7 3.1 23 189-211 35-57 (68)
44 TIGR01461 greB transcription e 34.3 74 0.0016 25.0 4.2 25 187-211 119-143 (156)
45 TIGR01462 greA transcription e 33.5 99 0.0021 24.0 4.8 25 187-211 117-141 (151)
46 PF01272 GreA_GreB: Transcript 33.2 45 0.00098 22.6 2.6 24 188-211 43-66 (77)
47 PRK01326 prsA foldase protein 32.9 32 0.00069 30.1 2.2 23 185-207 197-219 (310)
48 PF05688 DUF824: Salmonella re 32.8 98 0.0021 19.4 3.8 34 146-184 7-40 (47)
49 PRK05753 nucleoside diphosphat 30.8 1E+02 0.0022 23.6 4.4 25 187-211 91-115 (137)
50 cd01090 Creatinase Creatine am 30.6 1.6E+02 0.0034 24.3 5.9 52 145-203 74-134 (228)
51 PRK00809 hypothetical protein; 30.3 63 0.0014 25.1 3.2 25 187-211 24-48 (144)
52 TIGR03042 PS_II_psbQ_bact phot 29.9 56 0.0012 25.5 2.8 11 76-86 16-26 (142)
53 PRK05892 nucleoside diphosphat 29.8 1.5E+02 0.0033 23.2 5.4 24 188-211 122-145 (158)
54 PF06788 UPF0257: Uncharacteri 29.6 95 0.002 26.3 4.3 29 58-91 1-29 (236)
55 PRK12696 flgH flagellar basal 29.3 48 0.001 28.0 2.6 16 147-162 65-80 (236)
56 PRK06760 hypothetical protein; 28.9 34 0.00074 28.6 1.6 30 58-88 1-30 (223)
57 COG2834 LolA Outer membrane li 28.9 1.9E+02 0.004 23.7 6.0 11 73-83 16-26 (211)
58 cd01089 PA2G4-like Related to 28.1 2.4E+02 0.0051 23.1 6.6 53 144-203 79-145 (228)
59 PRK10802 peptidoglycan-associa 27.5 64 0.0014 25.7 2.9 11 73-83 16-26 (173)
60 PRK15324 type III secretion sy 27.5 1.1E+02 0.0023 26.3 4.3 27 74-100 13-39 (252)
61 COG0024 Map Methionine aminope 26.8 2.2E+02 0.0049 24.3 6.2 52 145-203 84-145 (255)
62 cd01088 MetAP2 Methionine Amin 26.3 1.5E+02 0.0032 25.5 5.2 54 143-203 66-125 (291)
63 TIGR00501 met_pdase_II methion 26.1 1.6E+02 0.0035 25.4 5.4 52 144-202 71-128 (295)
64 PF10907 DUF2749: Protein of u 25.6 44 0.00095 22.4 1.3 14 58-71 1-14 (66)
65 PRK08671 methionine aminopepti 24.5 1.9E+02 0.0041 24.9 5.5 51 145-202 69-125 (291)
66 PF10518 TAT_signal: TAT (twin 24.2 1E+02 0.0022 16.6 2.4 21 58-79 3-23 (26)
67 PRK10672 rare lipoprotein A; P 24.0 65 0.0014 29.0 2.5 21 58-82 1-21 (361)
68 PRK13733 conjugal transfer pro 23.7 1.4E+02 0.003 24.0 4.1 10 74-83 14-23 (171)
69 COG4808 Uncharacterized protei 23.5 63 0.0014 25.1 2.0 18 66-83 10-27 (152)
70 PRK01885 greB transcription el 22.8 1.3E+02 0.0028 23.6 3.8 24 188-211 122-145 (157)
71 PRK11627 hypothetical protein; 21.8 76 0.0016 25.9 2.3 22 58-83 1-22 (192)
72 COG4922 Uncharacterized protei 21.4 1.6E+02 0.0035 22.2 3.7 44 147-195 70-114 (129)
73 PTZ00053 methionine aminopepti 21.3 1.5E+02 0.0033 27.8 4.4 52 145-203 231-288 (470)
74 PRK12897 methionine aminopepti 21.3 3.1E+02 0.0068 22.7 6.1 52 145-203 82-142 (248)
75 PRK01622 OxaA-like protein pre 21.2 1E+02 0.0022 26.2 3.1 24 58-83 4-27 (256)
76 PF11254 DUF3053: Protein of u 21.2 59 0.0013 27.4 1.6 15 70-84 10-24 (229)
77 PLN02354 copper ion binding / 21.1 3.7E+02 0.008 25.7 7.1 32 131-162 40-76 (552)
78 PRK04081 hypothetical protein; 20.9 3.8E+02 0.0083 22.1 6.1 13 72-84 20-32 (207)
79 TIGR01742 SA_tandem_lipo Staph 20.9 2.7E+02 0.0059 23.8 5.5 24 60-83 5-28 (255)
80 PRK10510 putative outer membra 20.8 70 0.0015 26.6 2.0 23 58-81 1-23 (219)
81 COG3056 Uncharacterized lipopr 20.3 1.1E+02 0.0023 25.1 2.8 27 58-84 10-36 (204)
82 PRK10838 spr outer membrane li 20.0 92 0.002 25.4 2.5 25 147-171 128-159 (190)
83 PRK13883 conjugal transfer pro 20.0 73 0.0016 25.1 1.8 18 152-169 102-119 (151)
No 1
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.92 E-value=1e-24 Score=175.94 Aligned_cols=135 Identities=20% Similarity=0.298 Sum_probs=104.7
Q ss_pred hhhhccCCCCCCCcch------HHHHHHHHHHhhhhcCCCCCCCcccccCcceeeeeccCceeCCCceEEEEeec--CCC
Q 027802 74 PTLSASGKTKSKNPYD------EKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEV--GKG 145 (218)
Q Consensus 74 ~~lssc~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~~~~--G~G 145 (218)
+++.+|+..+.+.|.. -..+.++|++.-+. +...|..+...+ ...++.++++|++|+++++ |+|
T Consensus 12 ~~~~~c~~~~~~~pv~~~~~~~~~~s~~rnk~l~~~--e~~~I~~~i~~~------~~~~~~~t~sGl~Y~v~~~~~g~g 83 (177)
T TIGR03516 12 LLLLGCKTPEARRPISRSSGTTIKLSAERNKKLIAA--EEAAIKRIISAD------SIVKYETSQNGFWYYYNQKDTGEG 83 (177)
T ss_pred HHHhhcCCCCCCCCcCCCCcchHHHHHHHHHHHHHH--HHHHHHHHHHhC------CCCCceECCCccEEEEEEecCCCC
Confidence 4578899888887776 23455555533211 111222223222 1245677899999999977 566
Q ss_pred CCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCCChHHHHHHHccCCCCcEEEEEeCCCCCCCCC
Q 027802 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVS 217 (218)
Q Consensus 146 ~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~~i~Gle~aL~gmk~Ge~~~~~iP~~layg~~ 217 (218)
..|+.||.|++||++++.||++|++++. ..|..|.+|.+++++||+++|.+|++||+++|+|||++|||..
T Consensus 84 ~~p~~gd~V~v~Y~~~~~dG~v~~ss~~-~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~ 154 (177)
T TIGR03516 84 TTPEFGDLVTFEYDIRALDGDVIYSEEE-LGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLFPSHKAYGYY 154 (177)
T ss_pred CcCCCCCEEEEEEEEEeCCCCEEEeCCC-CCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEECHHHcCCCC
Confidence 7899999999999999999999999987 4599999999999999999999999999999999999999974
No 2
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.4e-25 Score=177.10 Aligned_cols=93 Identities=38% Similarity=0.739 Sum_probs=87.7
Q ss_pred eeccCceeCCCceEEEEeecCCCCCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCCChHHHHHHHccCCCCc
Q 027802 123 VTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGG 202 (218)
Q Consensus 123 ~~~~~~~~~~~g~~y~~~~~G~G~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~~i~Gle~aL~gmk~Ge 202 (218)
.......++++|+.|++++.|+|..|+.+|.|++||+|++.||++|||++++++|+.|.+| .+|+||.+||.+|++|+
T Consensus 91 ~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~ 168 (205)
T COG0545 91 AKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGG 168 (205)
T ss_pred cccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCc
Confidence 3445677889999999999999999999999999999999999999999999999999996 89999999999999999
Q ss_pred EEEEEeCCCCCCCCC
Q 027802 203 KRRIIIPPELGPPVS 217 (218)
Q Consensus 203 ~~~~~iP~~layg~~ 217 (218)
+++++|||++|||..
T Consensus 169 k~~l~IP~~laYG~~ 183 (205)
T COG0545 169 KRKLTIPPELAYGER 183 (205)
T ss_pred eEEEEeCchhccCcC
Confidence 999999999999964
No 3
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.86 E-value=2.4e-21 Score=159.89 Aligned_cols=96 Identities=29% Similarity=0.475 Sum_probs=88.6
Q ss_pred eeeeeccCceeCCCceEEEEeecCCCCCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCCChHHHHHHHccCC
Q 027802 120 VKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMR 199 (218)
Q Consensus 120 ~~~~~~~~~~~~~~g~~y~~~~~G~G~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~~i~Gle~aL~gmk 199 (218)
..+...+++.++++|++|+++++|+|..|+.||.|.+||++++.||++||+++.+++|..|.++ .+++||+++|.+|+
T Consensus 89 ~~~~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~ 166 (206)
T PRK11570 89 EENAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMP 166 (206)
T ss_pred HHhhhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCC
Confidence 3334556788899999999999999999999999999999999999999999998899999994 69999999999999
Q ss_pred CCcEEEEEeCCCCCCCCC
Q 027802 200 PGGKRRIIIPPELGPPVS 217 (218)
Q Consensus 200 ~Ge~~~~~iP~~layg~~ 217 (218)
+|++++|+||++++||+.
T Consensus 167 ~G~k~~~~IP~~lAYG~~ 184 (206)
T PRK11570 167 VGSKWELTIPHELAYGER 184 (206)
T ss_pred CCCEEEEEECHHHcCCCC
Confidence 999999999999999974
No 4
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.4e-21 Score=136.32 Aligned_cols=84 Identities=30% Similarity=0.616 Sum_probs=80.5
Q ss_pred ceEEEEeecCCC-CCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCCChHHHHHHHccCCCCcEEEEEeCCCC
Q 027802 134 GLIYRDFEVGKG-DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPEL 212 (218)
Q Consensus 134 g~~y~~~~~G~G-~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~~i~Gle~aL~gmk~Ge~~~~~iP~~l 212 (218)
|+..+++..|+| ..|+.||.|++||++.+.||+.|||+.+++.|+.|.+|.+.+|.||++++..|.+||+.++.|.|++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 577899999999 5799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 027802 213 GPPVS 217 (218)
Q Consensus 213 ayg~~ 217 (218)
|||..
T Consensus 82 aYG~~ 86 (108)
T KOG0544|consen 82 AYGPR 86 (108)
T ss_pred ccCCC
Confidence 99964
No 5
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.9e-20 Score=153.61 Aligned_cols=88 Identities=40% Similarity=0.784 Sum_probs=84.1
Q ss_pred eeCCCceEEEEeecCCCCCCCCCCeEEEEEEEEeC-CCcEEeccccCCCCEE-EEeCCCCChHHHHHHHccCCCCcEEEE
Q 027802 129 TKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNE-SGRRIDSTYLQGSPAR-IRMGTNALVPGFEEGIRDMRPGGKRRI 206 (218)
Q Consensus 129 ~~~~~g~~y~~~~~G~G~~~~~gd~V~v~Y~~~~~-dG~~~dss~~~~~p~~-f~lG~~~~i~Gle~aL~gmk~Ge~~~~ 206 (218)
.+.++|++|++++.|+|+.+..|+.|.+||.+++. +|++||+++. +.|+. |.+|.+.+|+||+.++.+|++|++++|
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv 194 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFG-GKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV 194 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccC-CCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence 56789999999999999999999999999999999 9999999987 67888 999999999999999999999999999
Q ss_pred EeCCCCCCCCC
Q 027802 207 IIPPELGPPVS 217 (218)
Q Consensus 207 ~iP~~layg~~ 217 (218)
+|||++|||+.
T Consensus 195 iIPp~lgYg~~ 205 (226)
T KOG0552|consen 195 IIPPELGYGKK 205 (226)
T ss_pred EeCcccccccc
Confidence 99999999975
No 6
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.82 E-value=5.6e-20 Score=157.15 Aligned_cols=98 Identities=31% Similarity=0.722 Sum_probs=89.3
Q ss_pred cceeeeeccCceeCCCceEEEEeecCCCCCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCCChHHHHHHHcc
Q 027802 118 FEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRD 197 (218)
Q Consensus 118 ~~~~~~~~~~~~~~~~g~~y~~~~~G~G~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~~i~Gle~aL~g 197 (218)
|...+...+++.++++|++|+++++|+|..|+.||.|.|||++++.||++|++++..+.|+.|.+ +.+++||+++|.+
T Consensus 131 fl~~~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~~ 208 (269)
T PRK10902 131 YREKFAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKN 208 (269)
T ss_pred HHHHhccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHHHHhc
Confidence 33444556678889999999999999999999999999999999999999999998889999998 5699999999999
Q ss_pred CCCCcEEEEEeCCCCCCCCC
Q 027802 198 MRPGGKRRIIIPPELGPPVS 217 (218)
Q Consensus 198 mk~Ge~~~~~iP~~layg~~ 217 (218)
|++|++++|+||++++||+.
T Consensus 209 Mk~Gek~~l~IP~~laYG~~ 228 (269)
T PRK10902 209 IKKGGKIKLVIPPELAYGKA 228 (269)
T ss_pred CCCCcEEEEEECchhhCCCC
Confidence 99999999999999999964
No 7
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=8.2e-20 Score=145.07 Aligned_cols=86 Identities=33% Similarity=0.589 Sum_probs=76.8
Q ss_pred CCceEEEEeecC--CCCCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCCChHHHHHHHccCCCCcEEEEEeC
Q 027802 132 DSGLIYRDFEVG--KGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIP 209 (218)
Q Consensus 132 ~~g~~y~~~~~G--~G~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~~i~Gle~aL~gmk~Ge~~~~~iP 209 (218)
.+++...++++- -..+.+.||.|.+||++.+.||++|||||.+++|++|.+|.+++|+||+.+|.+|.+||++++.||
T Consensus 67 ~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IP 146 (188)
T KOG0549|consen 67 DEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIP 146 (188)
T ss_pred CCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecC
Confidence 355666666552 235688999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 027802 210 PELGPPVS 217 (218)
Q Consensus 210 ~~layg~~ 217 (218)
|++|||+.
T Consensus 147 p~LgYG~~ 154 (188)
T KOG0549|consen 147 PHLGYGER 154 (188)
T ss_pred ccccCccC
Confidence 99999974
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.71 E-value=3.3e-17 Score=118.67 Aligned_cols=71 Identities=39% Similarity=0.780 Sum_probs=68.4
Q ss_pred CCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCCChHHHHHHHccCCCCcEEEEEeCCCCCCCCC
Q 027802 147 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVS 217 (218)
Q Consensus 147 ~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~~i~Gle~aL~gmk~Ge~~~~~iP~~layg~~ 217 (218)
+|+.||.|++||++++.||++|++++..++|+.|.+|.+.+++||+++|.+|++||+++|+||++++||+.
T Consensus 4 ~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~ 74 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEK 74 (94)
T ss_dssp SBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTT
T ss_pred cCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCcc
Confidence 58999999999999999999999998888999999999999999999999999999999999999999964
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.69 E-value=7.9e-17 Score=127.66 Aligned_cols=72 Identities=25% Similarity=0.439 Sum_probs=68.7
Q ss_pred CCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCCChHHHHHHHccCCCCcEEEEEeCCCCCCCCCC
Q 027802 147 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVSN 218 (218)
Q Consensus 147 ~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~~i~Gle~aL~gmk~Ge~~~~~iP~~layg~~~ 218 (218)
.++.||.|.+||++++.||++||+|+..++|+.|.+|.+++++||+++|.+|++|++++|.|||++|||+.|
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 578999999999999999999999987789999999999999999999999999999999999999999864
No 10
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=9.4e-15 Score=116.37 Aligned_cols=72 Identities=28% Similarity=0.380 Sum_probs=68.4
Q ss_pred CCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCCChHHHHHHHccCCCCcEEEEEeCCCCCCCCCC
Q 027802 147 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVSN 218 (218)
Q Consensus 147 ~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~~i~Gle~aL~gmk~Ge~~~~~iP~~layg~~~ 218 (218)
.+++||.|.+||+++..||++||+|.....|+.|.+|.+++++||++||.+|.+|++.++.|||+.|||+.|
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 478999999999999999999999987678999999999999999999999999999999999999999864
No 11
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.51 E-value=6.6e-14 Score=114.36 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=67.1
Q ss_pred CCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCCChHHHHHHHccCCCCcEEEEEeCCCCCCCCCC
Q 027802 147 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVSN 218 (218)
Q Consensus 147 ~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~~i~Gle~aL~gmk~Ge~~~~~iP~~layg~~~ 218 (218)
++++++.|+++|++++.||++|++|+. ..|+.|.+|.++++|||+++|.+|++|++++|.|||+.|||+.|
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 468899999999999999999999976 67999999999999999999999999999999999999999864
No 12
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.9e-11 Score=105.68 Aligned_cols=81 Identities=27% Similarity=0.384 Sum_probs=72.8
Q ss_pred CCceEEEEeecCCC--CCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCC-CCChHHHHHHHccCCCCcEEEEEe
Q 027802 132 DSGLIYRDFEVGKG--DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGT-NALVPGFEEGIRDMRPGGKRRIII 208 (218)
Q Consensus 132 ~~g~~y~~~~~G~G--~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~-~~~i~Gle~aL~gmk~Ge~~~~~i 208 (218)
+.+|..+++++|.| ..|.+|..|.+||.+++.|+ +|++. ...+.|.+|. ..++.||+.+|..|++||...|+|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~---~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i 158 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQR---ELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTI 158 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecc---ccceEEecCCccchhHHHHHHHHhcCccceEEEEe
Confidence 78999999999999 58999999999999999777 77765 3457888887 589999999999999999999999
Q ss_pred CCCCCCCC
Q 027802 209 PPELGPPV 216 (218)
Q Consensus 209 P~~layg~ 216 (218)
+|.++||+
T Consensus 159 ~~~YayG~ 166 (397)
T KOG0543|consen 159 DPKYAYGE 166 (397)
T ss_pred CcccccCC
Confidence 99999993
No 13
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.82 E-value=1.4e-08 Score=92.03 Aligned_cols=68 Identities=19% Similarity=0.447 Sum_probs=61.8
Q ss_pred CCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCCChHHHHHHHccCCCCcEEEEEeCCCCCCCC
Q 027802 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV 216 (218)
Q Consensus 146 ~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~~i~Gle~aL~gmk~Ge~~~~~iP~~layg~ 216 (218)
+.++.||.|.++|+++. ||+.|+++. ..++.|.+|.+.+++||+++|.||++|+++.|.+|...+|+.
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~ 212 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHA 212 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCc
Confidence 46899999999999986 999999873 579999999999999999999999999999999998888875
No 14
>PRK01490 tig trigger factor; Provisional
Probab=98.73 E-value=4e-08 Score=89.75 Aligned_cols=68 Identities=19% Similarity=0.442 Sum_probs=61.2
Q ss_pred CCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCCChHHHHHHHccCCCCcEEEEEeCCCCCCCC
Q 027802 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV 216 (218)
Q Consensus 146 ~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~~i~Gle~aL~gmk~Ge~~~~~iP~~layg~ 216 (218)
..++.||.|+++|+++. ||+.|+++ ...++.|.+|.+.+++||+++|.||++|+++.|.++....|+.
T Consensus 156 ~~~~~gD~V~vd~~~~~-~g~~~~~~--~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~ 223 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI-DGEEFEGG--KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHA 223 (435)
T ss_pred ccCCCCCEEEEEEEEEE-CCEECcCC--CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccc
Confidence 45799999999999998 89999876 3468999999999999999999999999999999998878764
No 15
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=5.6e-08 Score=88.78 Aligned_cols=65 Identities=18% Similarity=0.455 Sum_probs=57.8
Q ss_pred CCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCCChHHHHHHHccCCCCcEEEEEeCCCCCCC
Q 027802 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPP 215 (218)
Q Consensus 148 ~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~~i~Gle~aL~gmk~Ge~~~~~iP~~layg 215 (218)
++.||.|+|+|.|+. ||..|.+. ..+.+.+.+|.+.+||||+++|.|||+|++..|-|.....|+
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg--~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~ 222 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGG--KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYH 222 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCc--cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccc
Confidence 899999999999976 99999987 457899999999999999999999999999997776655664
No 16
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.9e-08 Score=87.39 Aligned_cols=63 Identities=29% Similarity=0.606 Sum_probs=58.1
Q ss_pred ecCCCC-CCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCCChHHHHHHHccCCCCcEE
Q 027802 141 EVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKR 204 (218)
Q Consensus 141 ~~G~G~-~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~~i~Gle~aL~gmk~Ge~~ 204 (218)
++|+|. .|..||.|.+||++++.||+.||||.+ +.|+.|.+|.+.+|.||..++..|+.|+.-
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~g~~~ 64 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKKGEAG 64 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccccccC
Confidence 468885 799999999999999999999999998 889999999999999999999999987653
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2.3e-06 Score=72.14 Aligned_cols=78 Identities=26% Similarity=0.342 Sum_probs=70.1
Q ss_pred CCceEEEEeecCCCCCC--CCCCeEEEEEEEEeC--CCcEEeccccCCCCEEEEeCCCCChHHHHHHHccCCCCcEEEEE
Q 027802 132 DSGLIYRDFEVGKGDCP--KDGQQVIFHYIGYNE--SGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207 (218)
Q Consensus 132 ~~g~~y~~~~~G~G~~~--~~gd~V~v~Y~~~~~--dG~~~dss~~~~~p~~f~lG~~~~i~Gle~aL~gmk~Ge~~~~~ 207 (218)
-.|+..+++..|+|.-| .+|..|.+||..... .++++|+|...|+|..+.+|+.--++-||..|..|+++|...|+
T Consensus 9 ~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~EvaqF~ 88 (329)
T KOG0545|consen 9 VEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQFW 88 (329)
T ss_pred chhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHHhh
Confidence 46899999999999754 689999999999876 45789999999999999999998999999999999999998887
Q ss_pred eC
Q 027802 208 IP 209 (218)
Q Consensus 208 iP 209 (218)
+.
T Consensus 89 ~d 90 (329)
T KOG0545|consen 89 CD 90 (329)
T ss_pred hh
Confidence 75
No 18
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=79.73 E-value=1.8 Score=27.23 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCCCC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGKTK 83 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~~~ 83 (218)
|||.+.+. ++++.+++++++|-.-+
T Consensus 2 mKk~i~~i-~~~l~~~~~l~~CnTv~ 26 (48)
T PRK10081 2 VKKTIAAI-FSVLVLSTVLTACNTTR 26 (48)
T ss_pred hHHHHHHH-HHHHHHHHHHhhhhhhh
Confidence 55555443 33344455799995533
No 19
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=71.75 E-value=4.7 Score=21.85 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=10.8
Q ss_pred hhhhHHHHHHHHHhhhhhhhccC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASG 80 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~ 80 (218)
|-||+++.+++++ .|++|.
T Consensus 6 mmKkil~~l~a~~----~LagCs 24 (25)
T PF08139_consen 6 MMKKILFPLLALF----MLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHH----HHhhcc
Confidence 5556655544433 378885
No 20
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=69.52 E-value=6 Score=28.07 Aligned_cols=26 Identities=12% Similarity=-0.064 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCCCCCC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGKTKSK 85 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~~~~~ 85 (218)
||+++++..+++.. ++|+||......
T Consensus 1 mk~klll~aviLs~--~LLaGCAs~~kv 26 (85)
T PRK09973 1 MKTIFTVGAVVLAT--CLLSGCVNEQKV 26 (85)
T ss_pred CchhHHHHHHHHHH--HHHHHcCCchhH
Confidence 67788776554433 468999887543
No 21
>PRK15396 murein lipoprotein; Provisional
Probab=62.27 E-value=10 Score=26.40 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=14.3
Q ss_pred hhh-hHHHHHHHHHhhhhhhhccCCCCCC
Q 027802 58 LKR-RVVPFLLFSSGLFPTLSASGKTKSK 85 (218)
Q Consensus 58 mrr-r~ll~ll~~~~~~~~lssc~~~~~~ 85 (218)
|+| +++++.+++ + +++|++|......
T Consensus 1 m~~~kl~l~av~l-s-~~LLaGCAs~~kv 27 (78)
T PRK15396 1 MNRTKLVLGAVIL-G-STLLAGCSSNAKI 27 (78)
T ss_pred CchhHHHHHHHHH-H-HHHHHHcCCchhH
Confidence 555 444443332 2 2468999887543
No 22
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=61.32 E-value=23 Score=26.17 Aligned_cols=22 Identities=0% Similarity=-0.043 Sum_probs=11.9
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGK 81 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~ 81 (218)
||++.+..+++++ +++|++|+.
T Consensus 1 m~~~~~~~~~~~~--~~~LsgCs~ 22 (113)
T PRK11548 1 MRCKTLTAAAAVL--LMLTAGCST 22 (113)
T ss_pred CcchHHHHHHHHH--HHHHcccCC
Confidence 5555444333222 356899975
No 23
>PF05481 Myco_19_kDa: Mycobacterium 19 kDa lipoprotein antigen; InterPro: IPR008691 Most of the antigens of Mycobacterium leprae and Mycobacterium tuberculosis that have been identified are members of stress protein families, which are highly conserved throughout many diverse species. Of the M. leprae and M. tuberculosis antigens identified by monoclonal antibodies, all except the 18 kDa M. leprae antigen and the 19 kDa M. tuberculosis antigen are strongly cross-reactive between these two species and are coded within very similar genes [, ].; GO: 0016020 membrane
Probab=58.75 E-value=3.4 Score=32.83 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCCCC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGKTK 83 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~~~ 83 (218)
|||+++..++.++.+++.+++|....
T Consensus 1 m~~~~~~~v~g~a~~aa~~~GCS~~~ 26 (160)
T PF05481_consen 1 MKRGLVVAVAGAAALAAGLSGCSSGD 26 (160)
T ss_pred CceeEeeehhhHHHHHHhhccccCCC
Confidence 88998877666666678899998743
No 24
>PRK09810 entericidin A; Provisional
Probab=58.62 E-value=9 Score=23.33 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=12.2
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCCCC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGKTK 83 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~~~ 83 (218)
|||.+++.++++ ++|++|-.-+
T Consensus 2 Mkk~~~l~~~~~----~~L~aCNTv~ 23 (41)
T PRK09810 2 MKRLIVLVLLAS----TLLTGCNTAR 23 (41)
T ss_pred hHHHHHHHHHHH----HHHhhhhhcc
Confidence 666665443322 2588896543
No 25
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family. This family is one of at least three major families of extracytoplasmic solute receptor (ESR) for TRAP (Tripartite ATP-independent Periplasmic Transporter) transporters. The others are the DctP (TIGR00787) and SmoM (pfam03480) families. These transporters are secondary (driven by an ion gradient) but composed of three polypeptides, although in some species the 4-TM and 12-TM integral membrane proteins are fused. Substrates for this transporter family are not fully characterized but, besides C4 dicarboxylates, may include mannitol and other compounds.
Probab=56.48 E-value=8.4 Score=32.92 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=18.2
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGK 81 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~ 81 (218)
||||+.+.+++++.+.+++++|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (320)
T TIGR02122 1 MKKRLFLLGAALAIVGAALAACAG 24 (320)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcc
Confidence 788887776666666677899985
No 26
>PHA02122 hypothetical protein
Probab=54.82 E-value=21 Score=23.21 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.5
Q ss_pred CCCCeEEEEEEEEeCCCcEEe
Q 027802 149 KDGQQVIFHYIGYNESGRRID 169 (218)
Q Consensus 149 ~~gd~V~v~Y~~~~~dG~~~d 169 (218)
..||.|.++|..+. ||+.|-
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEE
Confidence 46899999999997 887764
No 27
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=50.01 E-value=17 Score=19.50 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=8.9
Q ss_pred hhhhhhccCCCCC
Q 027802 72 LFPTLSASGKTKS 84 (218)
Q Consensus 72 ~~~~lssc~~~~~ 84 (218)
+++.+++|+.+.+
T Consensus 8 ~~~~LsgCG~KGp 20 (24)
T PF13627_consen 8 LALALSGCGQKGP 20 (24)
T ss_pred HHHHHHhcccCCC
Confidence 3456899987653
No 28
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=49.89 E-value=13 Score=32.01 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.1
Q ss_pred CCChHHHHHHHccCCCCcEEE
Q 027802 185 NALVPGFEEGIRDMRPGGKRR 205 (218)
Q Consensus 185 ~~~i~Gle~aL~gmk~Ge~~~ 205 (218)
+.+.|.|++++..|++|+...
T Consensus 187 ~~l~~~~~~a~~~Lk~GevS~ 207 (283)
T PRK02998 187 GQTVKEFEEAAYKLDAGQVSE 207 (283)
T ss_pred CcchHHHHHHHHcCCCCCcCC
Confidence 567899999999999998654
No 29
>PRK11653 hypothetical protein; Provisional
Probab=49.32 E-value=16 Score=30.67 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=16.7
Q ss_pred chhhhH----HHHHHHHHhhhhhhhccCCCCC
Q 027802 57 KLKRRV----VPFLLFSSGLFPTLSASGKTKS 84 (218)
Q Consensus 57 ~mrrr~----ll~ll~~~~~~~~lssc~~~~~ 84 (218)
.|||++ +..+++++++++.|++|+..+.
T Consensus 11 ~~rK~~rs~~la~vala~~a~f~LagC~~~~e 42 (225)
T PRK11653 11 SFRKNWRSRHLAPVALAVAAVFMLAGCEKSDE 42 (225)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHhccCCCcc
Confidence 466653 3333444556678999987543
No 30
>COG5510 Predicted small secreted protein [Function unknown]
Probab=46.25 E-value=20 Score=22.04 Aligned_cols=22 Identities=18% Similarity=0.233 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHhhhhhhhccC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASG 80 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~ 80 (218)
|||.+++.++++++ ...+++|-
T Consensus 2 mk~t~l~i~~vll~-s~llaaCN 23 (44)
T COG5510 2 MKKTILLIALVLLA-STLLAACN 23 (44)
T ss_pred chHHHHHHHHHHHH-HHHHHHhh
Confidence 66655555433333 34688883
No 31
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=46.10 E-value=28 Score=27.26 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=21.0
Q ss_pred hHHHHHHHccCCCCcEEEEEeCCC
Q 027802 188 VPGFEEGIRDMRPGGKRRIIIPPE 211 (218)
Q Consensus 188 i~Gle~aL~gmk~Ge~~~~~iP~~ 211 (218)
..-+-.+|.|.++|+.+.+..|..
T Consensus 123 ~SPlG~aLlGk~~Gd~v~~~~p~g 146 (157)
T PRK00226 123 ESPIARALIGKKVGDTVEVTTPGG 146 (157)
T ss_pred CChHHHHHhCCCCCCEEEEEcCCC
Confidence 456889999999999999998864
No 32
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=44.92 E-value=19 Score=26.02 Aligned_cols=9 Identities=11% Similarity=-0.053 Sum_probs=3.3
Q ss_pred HHhhhhhhh
Q 027802 69 SSGLFPTLS 77 (218)
Q Consensus 69 ~~~~~~~ls 77 (218)
+++++++++
T Consensus 12 ~LA~lLlis 20 (95)
T PF07172_consen 12 LLAALLLIS 20 (95)
T ss_pred HHHHHHHHH
Confidence 333333343
No 33
>PRK13792 lysozyme inhibitor; Provisional
Probab=43.10 E-value=20 Score=27.36 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=13.8
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCCCCC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGKTKS 84 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~~~~ 84 (218)
||+. |+.+++.++ +.|++|+....
T Consensus 1 mk~~-l~~ll~~~~--~lLsaCs~~~~ 24 (127)
T PRK13792 1 MKKA-LWLLLAAVP--VVLVACGGSDD 24 (127)
T ss_pred ChhH-HHHHHHHHH--hheecccCCCC
Confidence 6655 333333333 56899988653
No 34
>PF12262 Lipase_bact_N: Bacterial virulence factor lipase N-terminal
Probab=42.74 E-value=19 Score=31.11 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCCCCC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGKTKS 84 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~~~~ 84 (218)
|||.++..+++ .++.|++|+....
T Consensus 1 Mkk~~l~~~l~---sal~L~GCg~~s~ 24 (268)
T PF12262_consen 1 MKKLLLSSALA---SALGLAGCGGDSE 24 (268)
T ss_pred CchHHHHHHHH---HHHHeeecCCCcc
Confidence 78887554433 3467999998553
No 35
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=39.75 E-value=32 Score=24.32 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHHHhhhhhhhcc
Q 027802 58 LKRRVVPFLLFSSGLFPTLSAS 79 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc 79 (218)
|-||+++..++++.+.++|++-
T Consensus 1 MaRRlwiLslLAVtLtVALAAP 22 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAP 22 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhcc
Confidence 4455544433344444445544
No 36
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=37.97 E-value=1.2e+02 Score=23.38 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=14.8
Q ss_pred CCCCCeEEEEEEEEeCCCc
Q 027802 148 PKDGQQVIFHYIGYNESGR 166 (218)
Q Consensus 148 ~~~gd~V~v~Y~~~~~dG~ 166 (218)
++.|-.|.+.|.-+..+|.
T Consensus 54 i~dGKiv~~~ydy~~k~G~ 72 (147)
T COG4939 54 IQDGKIVACTYDYRDKKGN 72 (147)
T ss_pred EeCCEEEEEEeeeecCCCC
Confidence 5778888888888876664
No 37
>PRK10540 lipoprotein; Provisional
Probab=37.82 E-value=35 Score=23.36 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGK 81 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~ 81 (218)
|+||++..++ ++.+.+.+++|..
T Consensus 4 ~~kr~~~~~~-~~~~a~~L~gC~~ 26 (72)
T PRK10540 4 TSKKMAAAVL-AITLAMSLSACSN 26 (72)
T ss_pred HHHHHHHHHH-HHHHHHHHhccCC
Confidence 4455544333 3333456899963
No 38
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=36.58 E-value=1.5e+02 Score=25.04 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCCCC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGKTK 83 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~~~ 83 (218)
|||.++. ++++++ +++|.+|....
T Consensus 2 mkk~~~~-~~~a~~-l~~l~gC~~~~ 25 (234)
T PRK10523 2 MKKAIIT-ALAAAG-LFTLMGCNNRA 25 (234)
T ss_pred chHHHHH-HHHHHH-HHHhhccCCcc
Confidence 5665444 333333 35789998765
No 39
>COG2980 RlpB Rare lipoprotein B [Cell envelope biogenesis, outer membrane]
Probab=36.39 E-value=25 Score=28.39 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCCC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGKT 82 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~~ 82 (218)
||+ +..++++++++.+++||-.
T Consensus 1 M~~---L~~~lL~~a~~~L~aCGFh 22 (178)
T COG2980 1 MRK---LKTLLLLAAVLLLAACGFH 22 (178)
T ss_pred Ccc---hHHHHHHHHHHHHhhccee
Confidence 555 3444455556789999863
No 40
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=36.08 E-value=77 Score=21.03 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=26.8
Q ss_pred eeCCCceEEEEeecCCCCCCCCCCeEEEEEEEEeCCCcEE
Q 027802 129 TKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRI 168 (218)
Q Consensus 129 ~~~~~g~~y~~~~~G~G~~~~~gd~V~v~Y~~~~~dG~~~ 168 (218)
++.++|=.|+.-.+=.=+.++.|..|.|+|.-. +|+.+
T Consensus 19 itLdDGksy~lp~ef~~~~L~~G~kV~V~yd~~--~gk~v 56 (61)
T PF07076_consen 19 ITLDDGKSYKLPEEFDFDGLKPGMKVVVFYDEV--DGKRV 56 (61)
T ss_pred EEecCCCEEECCCcccccccCCCCEEEEEEEcc--CCcEE
Confidence 456777777755444445789999999999876 45443
No 41
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=35.93 E-value=37 Score=22.06 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=8.2
Q ss_pred hhhhccCCCCC
Q 027802 74 PTLSASGKTKS 84 (218)
Q Consensus 74 ~~lssc~~~~~ 84 (218)
+.|++|+-..+
T Consensus 15 ~sLA~CG~KGP 25 (58)
T COG5567 15 FSLAGCGLKGP 25 (58)
T ss_pred HHHHhcccCCC
Confidence 37999987654
No 42
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=35.12 E-value=14 Score=27.39 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=13.9
Q ss_pred ceeeeeccCceeCCCceEEEE
Q 027802 119 EVKVVTSENYTKRDSGLIYRD 139 (218)
Q Consensus 119 ~~~~~~~~~~~~~~~g~~y~~ 139 (218)
...+...++++++++||+|+|
T Consensus 104 la~n~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 104 LAENAKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HHHHHTSTTEEE-TTS-EEEE
T ss_pred HHHHcCCCCCEECCCCCeeeC
Confidence 333345678899999999986
No 43
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=34.74 E-value=59 Score=21.72 Aligned_cols=23 Identities=9% Similarity=0.319 Sum_probs=18.4
Q ss_pred HHHHHHHccCCCCcEEEEEeCCC
Q 027802 189 PGFEEGIRDMRPGGKRRIIIPPE 211 (218)
Q Consensus 189 ~Gle~aL~gmk~Ge~~~~~iP~~ 211 (218)
+.+..|+..|..||+..+++.+.
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETTS
T ss_pred HHHHHHHHHhhcCceeEEEEecC
Confidence 57899999999999999998764
No 44
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=34.30 E-value=74 Score=25.01 Aligned_cols=25 Identities=8% Similarity=0.143 Sum_probs=21.4
Q ss_pred ChHHHHHHHccCCCCcEEEEEeCCC
Q 027802 187 LVPGFEEGIRDMRPGGKRRIIIPPE 211 (218)
Q Consensus 187 ~i~Gle~aL~gmk~Ge~~~~~iP~~ 211 (218)
...-+-.+|.|.++||.+.+..|..
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~g 143 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPAG 143 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCCC
Confidence 3456899999999999999998864
No 45
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=33.53 E-value=99 Score=23.97 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=21.5
Q ss_pred ChHHHHHHHccCCCCcEEEEEeCCC
Q 027802 187 LVPGFEEGIRDMRPGGKRRIIIPPE 211 (218)
Q Consensus 187 ~i~Gle~aL~gmk~Ge~~~~~iP~~ 211 (218)
+..-+-.+|.|.++||.+.+..|..
T Consensus 117 ~~SPlG~ALlG~~~Gd~v~v~~p~g 141 (151)
T TIGR01462 117 IDSPLGKALIGKKVGDVVEVQTPKG 141 (151)
T ss_pred CCCHHHHHHcCCCCCCEEEEEeCCC
Confidence 3456999999999999999988864
No 46
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=33.20 E-value=45 Score=22.61 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=19.0
Q ss_pred hHHHHHHHccCCCCcEEEEEeCCC
Q 027802 188 VPGFEEGIRDMRPGGKRRIIIPPE 211 (218)
Q Consensus 188 i~Gle~aL~gmk~Ge~~~~~iP~~ 211 (218)
..-+-.||.|.++||.+.+.+|..
T Consensus 43 ~SPLG~ALlG~~~Gd~v~~~~~~g 66 (77)
T PF01272_consen 43 DSPLGKALLGKKVGDEVEVELPGG 66 (77)
T ss_dssp TSHHHHHHTT-BTT-EEEEEETTB
T ss_pred cCHHHHHhcCCCCCCEEEEEeCCc
Confidence 456899999999999999999863
No 47
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=32.93 E-value=32 Score=30.09 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=18.9
Q ss_pred CCChHHHHHHHccCCCCcEEEEE
Q 027802 185 NALVPGFEEGIRDMRPGGKRRII 207 (218)
Q Consensus 185 ~~~i~Gle~aL~gmk~Ge~~~~~ 207 (218)
+.+.+.|.+++..|++|+-...+
T Consensus 197 ~~l~~~~~~a~~~Lk~GevS~pv 219 (310)
T PRK01326 197 TNVPEQVKKAAFALDEDGVSDVI 219 (310)
T ss_pred CcccHHHHHHHHcCCCCCcCCce
Confidence 45777999999999999986643
No 48
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=32.82 E-value=98 Score=19.35 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=26.1
Q ss_pred CCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCC
Q 027802 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGT 184 (218)
Q Consensus 146 ~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~ 184 (218)
.+++.|+.|.+.-+.++.+|..+.. .++.+..|.
T Consensus 7 akaK~Ge~I~ltVt~kda~G~pv~n-----~~f~l~r~~ 40 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNPVPN-----APFTLTRGD 40 (47)
T ss_pred hheecCCeEEEEEEEECCCCCCcCC-----ceEEEEecC
Confidence 3678999999999999988877653 466666654
No 49
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=30.77 E-value=1e+02 Score=23.62 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=21.2
Q ss_pred ChHHHHHHHccCCCCcEEEEEeCCC
Q 027802 187 LVPGFEEGIRDMRPGGKRRIIIPPE 211 (218)
Q Consensus 187 ~i~Gle~aL~gmk~Ge~~~~~iP~~ 211 (218)
+..-+-.||.|.++|+.+.+..|..
T Consensus 91 i~SPlG~ALlG~~~Gd~v~v~~p~G 115 (137)
T PRK05753 91 VLAPVGAALLGLSVGQSIDWPLPGG 115 (137)
T ss_pred ccCHHHHHHcCCCCCCEEEEECCCC
Confidence 3556899999999999999888764
No 50
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=30.63 E-value=1.6e+02 Score=24.33 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=33.8
Q ss_pred CCCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCC---------CChHHHHHHHccCCCCcE
Q 027802 145 GDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTN---------ALVPGFEEGIRDMRPGGK 203 (218)
Q Consensus 145 G~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~---------~~i~Gle~aL~gmk~Ge~ 203 (218)
...+++||.|.+++-+.. +|-.-|. ..+|.+|.. .+..+.+.++..+|+|-+
T Consensus 74 ~r~l~~GD~v~~d~g~~~-~GY~ad~------~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~ 134 (228)
T cd01090 74 NRKVQRGDILSLNCFPMI-AGYYTAL------ERTLFLDEVSDAHLKIWEANVAVHERGLELIKPGAR 134 (228)
T ss_pred CcccCCCCEEEEEEeEEE-CCEeeee------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 356899999999988765 6643332 345566642 134567777778888844
No 51
>PRK00809 hypothetical protein; Provisional
Probab=30.32 E-value=63 Score=25.07 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=21.4
Q ss_pred ChHHHHHHHccCCCCcEEEEEeCCC
Q 027802 187 LVPGFEEGIRDMRPGGKRRIIIPPE 211 (218)
Q Consensus 187 ~i~Gle~aL~gmk~Ge~~~~~iP~~ 211 (218)
+..|-..-|..|++||.+.+|.+.+
T Consensus 24 ~~~~~rn~lr~Mk~GD~v~fYhs~~ 48 (144)
T PRK00809 24 VPERYKNTIEKVKPGDKLIIYVSQE 48 (144)
T ss_pred cchhhhhHHhhCCCCCEEEEEECCc
Confidence 4567778888999999999999975
No 52
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=29.89 E-value=56 Score=25.47 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=8.2
Q ss_pred hhccCCCCCCC
Q 027802 76 LSASGKTKSKN 86 (218)
Q Consensus 76 lssc~~~~~~~ 86 (218)
|.+|+......
T Consensus 16 Lvsc~~p~~~~ 26 (142)
T TIGR03042 16 LVSCSGPAAAV 26 (142)
T ss_pred HHHcCCCcccC
Confidence 89999876543
No 53
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=29.81 E-value=1.5e+02 Score=23.24 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=20.8
Q ss_pred hHHHHHHHccCCCCcEEEEEeCCC
Q 027802 188 VPGFEEGIRDMRPGGKRRIIIPPE 211 (218)
Q Consensus 188 i~Gle~aL~gmk~Ge~~~~~iP~~ 211 (218)
..-+-.||.|-++||.+.+..|..
T Consensus 122 ~SPlG~ALlGk~vGD~v~v~~p~g 145 (158)
T PRK05892 122 DSPLGQALAGHQAGDTVTYSTPQG 145 (158)
T ss_pred CCHHHHHHhCCCCCCEEEEEcCCC
Confidence 346889999999999999988864
No 54
>PF06788 UPF0257: Uncharacterised protein family (UPF0257); InterPro: IPR010646 This is a group of proteins of unknown function.; GO: 0005886 plasma membrane
Probab=29.64 E-value=95 Score=26.32 Aligned_cols=29 Identities=10% Similarity=0.269 Sum_probs=18.1
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCCCCCCCcchHH
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEK 91 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~~~~~~~~~~~ 91 (218)
|||++++.+++ ++|++|.......+|.-.
T Consensus 1 ~k~~~~~~~la-----~~L~~cd~~~a~~~f~P~ 29 (236)
T PF06788_consen 1 MKKTLLLLALA-----ILLAGCDNASAPESFTPE 29 (236)
T ss_pred CceeeHHHHHH-----HHhhhcccccccccCCHH
Confidence 66776555443 458899776666566543
No 55
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=29.29 E-value=48 Score=28.03 Aligned_cols=16 Identities=13% Similarity=0.272 Sum_probs=13.2
Q ss_pred CCCCCCeEEEEEEEEe
Q 027802 147 CPKDGQQVIFHYIGYN 162 (218)
Q Consensus 147 ~~~~gd~V~v~Y~~~~ 162 (218)
.-+.||.|+|......
T Consensus 65 A~~VGDivTV~i~E~~ 80 (236)
T PRK12696 65 ARRVGDIVLVKIVENS 80 (236)
T ss_pred cccCCCEEEEEEEEee
Confidence 4578999999998775
No 56
>PRK06760 hypothetical protein; Provisional
Probab=28.92 E-value=34 Score=28.58 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCCCCCCCcc
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGKTKSKNPY 88 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~~~~~~~~ 88 (218)
|||++-+++++++. +..|+||+......|.
T Consensus 1 MKK~l~i~~~~~i~-~~~fsaCS~~~~~~Pa 30 (223)
T PRK06760 1 MKKTLTIFMLTILL-LISFSACSKKENSFPA 30 (223)
T ss_pred CceeeehHHHHHHH-HHHHhccCCCcccCCc
Confidence 77777666554443 4578999977554443
No 57
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
Probab=28.90 E-value=1.9e+02 Score=23.65 Aligned_cols=11 Identities=27% Similarity=0.235 Sum_probs=6.4
Q ss_pred hhhhhccCCCC
Q 027802 73 FPTLSASGKTK 83 (218)
Q Consensus 73 ~~~lssc~~~~ 83 (218)
.+++++|....
T Consensus 16 ~~f~~~~~~~~ 26 (211)
T COG2834 16 LLFLSACAQAG 26 (211)
T ss_pred HHHhhhhhhhh
Confidence 34577776543
No 58
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=28.13 E-value=2.4e+02 Score=23.10 Aligned_cols=53 Identities=25% Similarity=0.234 Sum_probs=34.5
Q ss_pred CCCCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCC--------------ChHHHHHHHccCCCCcE
Q 027802 144 KGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNA--------------LVPGFEEGIRDMRPGGK 203 (218)
Q Consensus 144 ~G~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~--------------~i~Gle~aL~gmk~Ge~ 203 (218)
+...+++||.|.+++-+.. +|-.-|- ..+|.+|... .....+.++..+|+|-+
T Consensus 79 ~~~~l~~Gd~v~iD~g~~~-~GY~sD~------tRT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~ 145 (228)
T cd01089 79 ATYTLKDGDVVKIDLGCHI-DGYIAVV------AHTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQ 145 (228)
T ss_pred CCcccCCCCEEEEEEEEEE-CCEEEEE------EEEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3456899999999987766 6644333 3456666421 13456777888888854
No 59
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=27.49 E-value=64 Score=25.75 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=7.5
Q ss_pred hhhhhccCCCC
Q 027802 73 FPTLSASGKTK 83 (218)
Q Consensus 73 ~~~lssc~~~~ 83 (218)
+++|++|....
T Consensus 16 ~~~laaC~s~~ 26 (173)
T PRK10802 16 VMAIAACSSNK 26 (173)
T ss_pred HHHHHHcCCCC
Confidence 44689997643
No 60
>PRK15324 type III secretion system lipoprotein PrgK; Provisional
Probab=27.49 E-value=1.1e+02 Score=26.26 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=14.8
Q ss_pred hhhhccCCCCCCCcchHHHHHHHHHHh
Q 027802 74 PTLSASGKTKSKNPYDEKRLLEQNKRM 100 (218)
Q Consensus 74 ~~lssc~~~~~~~~~~~~~~~~~~~~~ 100 (218)
+.+++|....-....++.+..+-....
T Consensus 13 ~lLs~c~~~~Lys~L~~~dAneIv~~L 39 (252)
T PRK15324 13 MTLAGCKDKDLLKGLDQEQANEVIAVL 39 (252)
T ss_pred HHHcCCCeehhhcCCCHHHHHHHHHHH
Confidence 358999865444444444444444433
No 61
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=26.76 E-value=2.2e+02 Score=24.34 Aligned_cols=52 Identities=21% Similarity=0.313 Sum_probs=37.2
Q ss_pred CCCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCC------Ch----HHHHHHHccCCCCcE
Q 027802 145 GDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNA------LV----PGFEEGIRDMRPGGK 203 (218)
Q Consensus 145 G~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~------~i----~Gle~aL~gmk~Ge~ 203 (218)
....++||.|.++..... ||-.-|+ ..+|.+|... ++ ..|+.++..+|+|-+
T Consensus 84 ~~vlk~GDiv~IDvg~~~-dG~~~Ds------a~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~ 145 (255)
T COG0024 84 KKVLKEGDIVKIDVGAHI-DGYIGDT------AITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGAR 145 (255)
T ss_pred CcccCCCCEEEEEEEEEE-CCeeeeE------EEEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 346899999999998887 7766655 3567787422 22 457788888888854
No 62
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=26.31 E-value=1.5e+02 Score=25.55 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=35.5
Q ss_pred CCCCCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCC------CChHHHHHHHccCCCCcE
Q 027802 143 GKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTN------ALVPGFEEGIRDMRPGGK 203 (218)
Q Consensus 143 G~G~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~------~~i~Gle~aL~gmk~Ge~ 203 (218)
++...+++||.|.++.-+.. ||-.-|.+ .+|.+|.. ....+++.++..||+|-+
T Consensus 66 ~d~~~l~~GDvV~iD~G~~~-dGY~sD~a------rT~~vg~~~~~l~ea~~~A~~~ai~~ikPG~~ 125 (291)
T cd01088 66 GDDTVLKEGDVVKLDFGAHV-DGYIADSA------FTVDFDPKYDDLLEAAKEALNAAIKEAGPDVR 125 (291)
T ss_pred CCCcccCCCCEEEEEEEEEE-CCEEEEEE------EEEecChhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34457899999999987655 77544433 34555542 134567778888888844
No 63
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=26.09 E-value=1.6e+02 Score=25.45 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=34.5
Q ss_pred CCCCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCC--C----ChHHHHHHHccCCCCc
Q 027802 144 KGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTN--A----LVPGFEEGIRDMRPGG 202 (218)
Q Consensus 144 ~G~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~--~----~i~Gle~aL~gmk~Ge 202 (218)
+...+++||.|.++.-+.. ||-.-|.+ .+|.+|.. . ...+++.++..+|+|-
T Consensus 71 d~~~l~~GDvV~iD~G~~~-dGY~aD~a------rT~~vG~~~~~l~~a~~~A~~aai~~~kPGv 128 (295)
T TIGR00501 71 DKTVFKDGDVVKLDLGAHV-DGYIADTA------ITVDLGDQYDNLVKAAKDALYTAIKEIRAGV 128 (295)
T ss_pred cCccCCCCCEEEEEEeEEE-CCEEEEEE------EEEEeCcHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3456899999999987665 77655443 45666642 1 2355677778888874
No 64
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=25.62 E-value=44 Score=22.44 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHHHh
Q 027802 58 LKRRVVPFLLFSSG 71 (218)
Q Consensus 58 mrrr~ll~ll~~~~ 71 (218)
|+++++++|+++++
T Consensus 1 ms~~viIaL~~ava 14 (66)
T PF10907_consen 1 MSRRVIIALVVAVA 14 (66)
T ss_pred CCcchhHHHHHHHH
Confidence 67888777666655
No 65
>PRK08671 methionine aminopeptidase; Provisional
Probab=24.54 E-value=1.9e+02 Score=24.90 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=34.0
Q ss_pred CCCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCC------CChHHHHHHHccCCCCc
Q 027802 145 GDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTN------ALVPGFEEGIRDMRPGG 202 (218)
Q Consensus 145 G~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~------~~i~Gle~aL~gmk~Ge 202 (218)
...+++||.|.++.-+.. ||-.-|.+ .++.+|.. ....+++.++..+|+|-
T Consensus 69 ~~~l~~GDvV~iD~G~~~-dGY~aD~a------rT~~vG~~~~~l~~a~~~a~~aai~~ikpG~ 125 (291)
T PRK08671 69 ERVFPEGDVVKLDLGAHV-DGYIADTA------VTVDLGGKYEDLVEASEEALEAAIEVVRPGV 125 (291)
T ss_pred CcccCCCCEEEEEEeEEE-CCEEEEEE------EEEEeChhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456899999999986654 77655543 35566632 13455777778888884
No 66
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=24.24 E-value=1e+02 Score=16.56 Aligned_cols=21 Identities=10% Similarity=0.023 Sum_probs=9.3
Q ss_pred hhhhHHHHHHHHHhhhhhhhcc
Q 027802 58 LKRRVVPFLLFSSGLFPTLSAS 79 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc 79 (218)
.||.++-. .+++++...+.+|
T Consensus 3 sRR~fLk~-~~a~~a~~~~~~~ 23 (26)
T PF10518_consen 3 SRRQFLKG-GAAAAAAAALGGC 23 (26)
T ss_pred cHHHHHHH-HHHHHHHHHhccc
Confidence 35555444 3333333444444
No 67
>PRK10672 rare lipoprotein A; Provisional
Probab=23.99 E-value=65 Score=29.03 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCCC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGKT 82 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~~ 82 (218)
||+++++.++++ ++|++|...
T Consensus 1 mr~~~l~~~~~~----~~l~~Cs~~ 21 (361)
T PRK10672 1 MRKQWLGIGIAA----GLLAACTSD 21 (361)
T ss_pred CchhHHHHHHHH----HHHhhhcCC
Confidence 788886655443 357889654
No 68
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=23.69 E-value=1.4e+02 Score=24.02 Aligned_cols=10 Identities=30% Similarity=0.199 Sum_probs=5.8
Q ss_pred hhhhccCCCC
Q 027802 74 PTLSASGKTK 83 (218)
Q Consensus 74 ~~lssc~~~~ 83 (218)
+.|++|....
T Consensus 14 LlL~GCAg~~ 23 (171)
T PRK13733 14 LLLSGCAGTN 23 (171)
T ss_pred HHhccccCCC
Confidence 3477776543
No 69
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.49 E-value=63 Score=25.09 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=11.4
Q ss_pred HHHHHhhhhhhhccCCCC
Q 027802 66 LLFSSGLFPTLSASGKTK 83 (218)
Q Consensus 66 ll~~~~~~~~lssc~~~~ 83 (218)
+++++.+++.|++|+..+
T Consensus 10 ~~~alil~~sl~gCgdkE 27 (152)
T COG4808 10 LVVALVLVFSLAGCGDKE 27 (152)
T ss_pred HHHHHHHHHHhhhcCchh
Confidence 333444556799999754
No 70
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=22.85 E-value=1.3e+02 Score=23.64 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=21.0
Q ss_pred hHHHHHHHccCCCCcEEEEEeCCC
Q 027802 188 VPGFEEGIRDMRPGGKRRIIIPPE 211 (218)
Q Consensus 188 i~Gle~aL~gmk~Ge~~~~~iP~~ 211 (218)
..-+-.+|.|.++|+.+.+.+|..
T Consensus 122 ~SPlG~ALlGk~vGd~v~v~~p~g 145 (157)
T PRK01885 122 DSPMARALLKKEVGDEVTVNTPAG 145 (157)
T ss_pred cCHHHHHHhCCCCCCEEEEEcCCC
Confidence 456889999999999999998864
No 71
>PRK11627 hypothetical protein; Provisional
Probab=21.80 E-value=76 Score=25.93 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCCCC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGKTK 83 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~~~ 83 (218)
|=||+++.+++++ .|+||....
T Consensus 1 mlkklll~l~a~~----~L~gCA~~p 22 (192)
T PRK11627 1 MLKKILFPLVALF----MLAGCATPS 22 (192)
T ss_pred ChHHHHHHHHHHH----HHHhhcCCC
Confidence 3455555443322 388898754
No 72
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.40 E-value=1.6e+02 Score=22.24 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=26.9
Q ss_pred CCCCCCeEEEEEEEEeCC-CcEEeccccCCCCEEEEeCCCCChHHHHHHH
Q 027802 147 CPKDGQQVIFHYIGYNES-GRRIDSTYLQGSPARIRMGTNALVPGFEEGI 195 (218)
Q Consensus 147 ~~~~gd~V~v~Y~~~~~d-G~~~dss~~~~~p~~f~lG~~~~i~Gle~aL 195 (218)
.+.+||.|.+||--++.. |..-.-+ .-.|.+..+.+.+-|+-+.
T Consensus 70 ~iadGdLV~vh~hqt~~~pg~~~~v~-----~DtfR~ddgkivEHWDviq 114 (129)
T COG4922 70 VIADGDLVTVHYHQTVSEPGSYTTVT-----FDTFRIDDGKIVEHWDVIQ 114 (129)
T ss_pred EeccCCEEEEEEeeeeCCCCcceeEE-----EEEEEeeCCceeeccchhh
Confidence 478999999999888754 3221111 1245555566666666555
No 73
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=21.34 E-value=1.5e+02 Score=27.76 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=35.2
Q ss_pred CCCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCC------CChHHHHHHHccCCCCcE
Q 027802 145 GDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTN------ALVPGFEEGIRDMRPGGK 203 (218)
Q Consensus 145 G~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~------~~i~Gle~aL~gmk~Ge~ 203 (218)
...+++||.|.|++-+.. ||-..|.+ .+|.+|.. ....+.+.||..+++|-+
T Consensus 231 ~~vLk~GDvVkID~G~~v-dGYiaD~A------rTv~vg~~~~~L~eAv~eA~~aaI~~~kpGv~ 288 (470)
T PTZ00053 231 KTVLTYDDVCKLDFGTHV-NGRIIDCA------FTVAFNPKYDPLLQATKDATNTGIKEAGIDVR 288 (470)
T ss_pred CcEecCCCeEEEEEeEEE-CCEEEeEE------EEEEeCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 346899999999998876 88777764 34455531 133556677777777743
No 74
>PRK12897 methionine aminopeptidase; Reviewed
Probab=21.27 E-value=3.1e+02 Score=22.70 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=34.9
Q ss_pred CCCCCCCCeEEEEEEEEeCCCcEEeccccCCCCEEEEeCCCC---------ChHHHHHHHccCCCCcE
Q 027802 145 GDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNA---------LVPGFEEGIRDMRPGGK 203 (218)
Q Consensus 145 G~~~~~gd~V~v~Y~~~~~dG~~~dss~~~~~p~~f~lG~~~---------~i~Gle~aL~gmk~Ge~ 203 (218)
+..+++||.|.+++-+.. +|-.-|.+ .+|.+|... .....+.++..+++|-+
T Consensus 82 ~~~l~~Gd~V~iD~g~~~-~GY~sD~t------RT~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~ 142 (248)
T PRK12897 82 DVPLTEGDIVTIDMVVNL-NGGLSDSA------WTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNR 142 (248)
T ss_pred CcccCCCCEEEEEeeEEE-CCEEEEEE------EEEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 457899999999998765 66544433 456666421 24567777888888854
No 75
>PRK01622 OxaA-like protein precursor; Validated
Probab=21.16 E-value=1e+02 Score=26.22 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCCCC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGKTK 83 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~~~ 83 (218)
.||++.++ +++.+++++++|....
T Consensus 4 ~~~~~~~~--~~~~~~~~~~gc~~~~ 27 (256)
T PRK01622 4 SYRAVLVS--LSLLLVLVLSGCSNAA 27 (256)
T ss_pred HHHHHHHH--HHHHHHHHHhccCCCC
Confidence 45555542 3334457899997664
No 76
>PF11254 DUF3053: Protein of unknown function (DUF3053); InterPro: IPR021413 Some members in this family of proteins are annotated as the membrane protein YiaF. No function is currently known.
Probab=21.16 E-value=59 Score=27.41 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=10.7
Q ss_pred HhhhhhhhccCCCCC
Q 027802 70 SGLFPTLSASGKTKS 84 (218)
Q Consensus 70 ~~~~~~lssc~~~~~ 84 (218)
+++.+.|++|+.+++
T Consensus 10 l~~~l~LagCgdKEp 24 (229)
T PF11254_consen 10 LLMVLQLAGCGDKEP 24 (229)
T ss_pred HHHHHHHHhcCCCCH
Confidence 344567999988764
No 77
>PLN02354 copper ion binding / oxidoreductase
Probab=21.09 E-value=3.7e+02 Score=25.66 Aligned_cols=32 Identities=9% Similarity=0.158 Sum_probs=20.0
Q ss_pred CCCceEEEEee-cCC--CCC--CCCCCeEEEEEEEEe
Q 027802 131 RDSGLIYRDFE-VGK--GDC--PKDGQQVIFHYIGYN 162 (218)
Q Consensus 131 ~~~g~~y~~~~-~G~--G~~--~~~gd~V~v~Y~~~~ 162 (218)
.++|+...++. .|. |.. +..||.|.|+..-.+
T Consensus 40 ~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l 76 (552)
T PLN02354 40 SPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNL 76 (552)
T ss_pred cCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECC
Confidence 45666555443 333 443 478999998887664
No 78
>PRK04081 hypothetical protein; Provisional
Probab=20.92 E-value=3.8e+02 Score=22.15 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=9.1
Q ss_pred hhhhhhccCCCCC
Q 027802 72 LFPTLSASGKTKS 84 (218)
Q Consensus 72 ~~~~lssc~~~~~ 84 (218)
++.+|.+|+....
T Consensus 20 ~~~~L~gC~sns~ 32 (207)
T PRK04081 20 VMVGLVGCGSNSD 32 (207)
T ss_pred HHHHHhcccCCcc
Confidence 3457899988654
No 79
>TIGR01742 SA_tandem_lipo Staphylococcus tandem lipoproteins. Members of this family are predicted lipoproteins (mostly), found in Staphylococcus aureus in several different tandem clusters in pathogenicity islands. Members are also found, clustered, in Staphylococcus epidermidis.
Probab=20.89 E-value=2.7e+02 Score=23.84 Aligned_cols=24 Identities=4% Similarity=0.083 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHhhhhhhhccCCCC
Q 027802 60 RRVVPFLLFSSGLFPTLSASGKTK 83 (218)
Q Consensus 60 rr~ll~ll~~~~~~~~lssc~~~~ 83 (218)
+|+++++.+++.+...+.+|+...
T Consensus 5 kkl~l~i~~~il~I~~i~GC~~~~ 28 (255)
T TIGR01742 5 KKIALYISALILIISFVVGCGMFL 28 (255)
T ss_pred HHHHHHHHHHHHHheeeecccccc
Confidence 344444433333233579998543
No 80
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=20.82 E-value=70 Score=26.58 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=12.7
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGK 81 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~ 81 (218)
|++|++..+++ +++.++|++|..
T Consensus 1 ~~~~~~~~~~~-~~~~~~lsgC~~ 23 (219)
T PRK10510 1 MKKRVYLIAAV-VSGALAVSGCTT 23 (219)
T ss_pred CcccHHHHHHH-HHHHHHHhccCC
Confidence 56666544332 233346899964
No 81
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=20.29 E-value=1.1e+02 Score=25.09 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHHHhhhhhhhccCCCCC
Q 027802 58 LKRRVVPFLLFSSGLFPTLSASGKTKS 84 (218)
Q Consensus 58 mrrr~ll~ll~~~~~~~~lssc~~~~~ 84 (218)
++|...+.+|..++..+.|++|..+..
T Consensus 10 ~~k~~t~k~L~~laa~~lLagC~a~~~ 36 (204)
T COG3056 10 ESKNMTKKILFPLAAIFLLAGCAAPPT 36 (204)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 444444555555555567899987653
No 82
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=20.04 E-value=92 Score=25.41 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=17.7
Q ss_pred CCCCCCeEEE-------EEEEEeCCCcEEecc
Q 027802 147 CPKDGQQVIF-------HYIGYNESGRRIDST 171 (218)
Q Consensus 147 ~~~~gd~V~v-------~Y~~~~~dG~~~dss 171 (218)
.++.||.|.+ |--++..||..+..+
T Consensus 128 ~lqpGDLVfF~~~~~~~HVGIyiGng~~IHAs 159 (190)
T PRK10838 128 KLRTGDLVLFRAGSTGRHVGIYIGNNQFVHAS 159 (190)
T ss_pred CCCCCcEEEECCCCCCCEEEEEecCCEEEEeC
Confidence 5789999987 455556677776654
No 83
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=20.01 E-value=73 Score=25.09 Aligned_cols=18 Identities=6% Similarity=0.091 Sum_probs=13.5
Q ss_pred CeEEEEEEEEeCCCcEEe
Q 027802 152 QQVIFHYIGYNESGRRID 169 (218)
Q Consensus 152 d~V~v~Y~~~~~dG~~~d 169 (218)
..+.++|..-..+|..+.
T Consensus 102 ~~~~L~Yvvd~~~~~~ly 119 (151)
T PRK13883 102 GGLPLRYVLDQAGDSNLY 119 (151)
T ss_pred CCcceEEEEecCCCceEE
Confidence 578899998877776544
Done!