BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027804
(218 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5M759|VP221_ARATH Vacuolar protein sorting-associated protein 22 homolog 1
OS=Arabidopsis thaliana GN=VP22-1 PE=2 SV=2
Length = 250
Score = 352 bits (902), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 164/187 (87%), Positives = 179/187 (95%)
Query: 1 MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
MRRRPGIGGLQ AA ARDQYRLLGENVAKLRTD+MKEQL+TFRSQLE+FARKHKNDIRKN
Sbjct: 1 MRRRPGIGGLQKAAAARDQYRLLGENVAKLRTDMMKEQLSTFRSQLEEFARKHKNDIRKN 60
Query: 61 PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
P FR+QFHEMCA +GVDPLASNKGFWAELLGIGDFYYELGVQI+E+C+ TR HNGGLI+L
Sbjct: 61 PAFRAQFHEMCANIGVDPLASNKGFWAELLGIGDFYYELGVQIIEVCMLTRSHNGGLISL 120
Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
QELCN LRQRRK +REAV+EDDCLRAISKLKVLG+G+EVI++GKKKLVRSVPTELNKDHN
Sbjct: 121 QELCNHLRQRRKKDREAVTEDDCLRAISKLKVLGSGFEVITIGKKKLVRSVPTELNKDHN 180
Query: 181 QILELAQ 187
QILELAQ
Sbjct: 181 QILELAQ 187
>sp|Q5RJU0|SNF8_XENTR Vacuolar-sorting protein SNF8 OS=Xenopus tropicalis GN=snf8 PE=2
SV=1
Length = 257
Score = 211 bits (537), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 101/186 (54%), Positives = 132/186 (70%)
Query: 2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
RR G G + +A +Y+ G +A+ + M +QL F++ LE+FA KHK +IRKNP
Sbjct: 3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLLQMSKQLEMFKTNLEEFASKHKQEIRKNP 62
Query: 62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA + HNGGLI L
Sbjct: 63 QFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHHNGGLITLA 122
Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
EL + + R + VS+DD +RAI KLKVLGNG+ +I VG LV+SVP ELN DH
Sbjct: 123 ELHQHVLKGRGKLAQDVSQDDIIRAIKKLKVLGNGFGIIPVGGSYLVQSVPAELNMDHTV 182
Query: 182 ILELAQ 187
+L+LA+
Sbjct: 183 VLQLAE 188
>sp|Q9LIJ4|VP222_ARATH Putative vacuolar protein sorting-associated protein 22 homolog 2
OS=Arabidopsis thaliana GN=VP22-2 PE=5 SV=1
Length = 120
Score = 211 bits (536), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 96/117 (82%), Positives = 110/117 (94%)
Query: 70 MCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQ 129
MCA +GVDPLASNKGFWAELLGIGDFYYE+GVQI+E+C+ TR HNGGLI+LQELCN LRQ
Sbjct: 1 MCANIGVDPLASNKGFWAELLGIGDFYYEIGVQIIEVCMLTRSHNGGLISLQELCNHLRQ 60
Query: 130 RRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELA 186
RRK++REAV+EDDCLRAISKLK+LG+ +EVI++GKKK VRSVPTELNKDHN ILELA
Sbjct: 61 RRKTDREAVTEDDCLRAISKLKLLGSRFEVITIGKKKFVRSVPTELNKDHNHILELA 117
>sp|Q5RK19|SNF8_RAT Vacuolar-sorting protein SNF8 OS=Rattus norvegicus GN=Snf8 PE=1
SV=1
Length = 258
Score = 204 bits (520), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%)
Query: 2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
RR G G + +A +Y+ G +A+ + M +QL F++ LE+FA KHK +IRKNP
Sbjct: 3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62
Query: 62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA + NGGLI L+
Sbjct: 63 EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122
Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
EL + + R + VS+DD +RAI KLK LG G+ +I VG L++SVP ELN DH
Sbjct: 123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTV 182
Query: 182 ILELAQ 187
+L+LA+
Sbjct: 183 VLQLAE 188
>sp|Q9CZ28|SNF8_MOUSE Vacuolar-sorting protein SNF8 OS=Mus musculus GN=Snf8 PE=2 SV=1
Length = 258
Score = 204 bits (520), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%)
Query: 2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
RR G G + +A +Y+ G +A+ + M +QL F++ LE+FA KHK +IRKNP
Sbjct: 3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62
Query: 62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA + NGGLI L+
Sbjct: 63 EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122
Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
EL + + R + VS+DD +RAI KLK LG G+ +I VG L++SVP ELN DH
Sbjct: 123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTV 182
Query: 182 ILELAQ 187
+L+LA+
Sbjct: 183 VLQLAE 188
>sp|Q96H20|SNF8_HUMAN Vacuolar-sorting protein SNF8 OS=Homo sapiens GN=SNF8 PE=1 SV=1
Length = 258
Score = 204 bits (520), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%)
Query: 2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
RR G G + +A +Y+ G +A+ + M +QL F++ LE+FA KHK +IRKNP
Sbjct: 3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62
Query: 62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA + NGGLI L+
Sbjct: 63 EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122
Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
EL + + R + VS+DD +RAI KLK LG G+ +I VG L++SVP ELN DH
Sbjct: 123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTV 182
Query: 182 ILELAQ 187
+L+LA+
Sbjct: 183 VLQLAE 188
>sp|Q5U3V9|SNF8_DANRE Vacuolar-sorting protein SNF8 OS=Danio rerio GN=snf8 PE=2 SV=2
Length = 258
Score = 204 bits (518), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 98/186 (52%), Positives = 131/186 (70%)
Query: 2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
RR G G + +A +Y+ G +A+ + M +QL TF++ LE+FA KHK +IRK+
Sbjct: 3 RRGVGAGAIAKKKLAEAKYKERGSVLAEDQIAQMSKQLDTFKTHLEEFASKHKQEIRKSS 62
Query: 62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
FR QF EMCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA + NGGLI L
Sbjct: 63 QFRVQFQEMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLD 122
Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
EL + + + R + VS+DD +RAI KLK +GNG+ +I VG LV+SVP ELN DH
Sbjct: 123 ELHHRVLKGRGKFAQDVSQDDLVRAIKKLKAMGNGFGMIPVGGTYLVQSVPAELNMDHTV 182
Query: 182 ILELAQ 187
+L+LA+
Sbjct: 183 VLQLAE 188
>sp|Q54RC4|SNF8_DICDI Vacuolar-sorting protein SNF8 OS=Dictyostelium discoideum GN=snf8
PE=3 SV=1
Length = 246
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/188 (53%), Positives = 124/188 (65%), Gaps = 1/188 (0%)
Query: 1 MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
MRR GI Q + Q + + E + + +KEQL F+ LE FA KHK DI KN
Sbjct: 1 MRRGIGIQAAQKQTQTQKQLQNVSEQLNTENINKIKEQLLVFKENLEIFATKHKKDIIKN 60
Query: 61 PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
P FR F +MC +GVDPLASNKGFW ++LG+GDFYY LGVQI+EICL R NGGL+ +
Sbjct: 61 PEFRKYFQDMCNMIGVDPLASNKGFWCQVLGVGDFYYTLGVQIIEICLKYRSSNGGLMEM 120
Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISV-GKKKLVRSVPTELNKDH 179
L LR+ R N + +S DD +ISKLKVLGNG+ +I V G KKLV+SVP ELNKDH
Sbjct: 121 DTLAEHLRKLRGKNSQEISCDDIECSISKLKVLGNGFNIIKVSGGKKLVQSVPCELNKDH 180
Query: 180 NQILELAQ 187
I+ LAQ
Sbjct: 181 TDIIILAQ 188
>sp|O94663|SNF8_SCHPO Vacuolar-sorting protein dot2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=dot2 PE=3 SV=1
Length = 252
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 119/191 (62%), Gaps = 5/191 (2%)
Query: 1 MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
MR+R GIG L + QY +G + + ++D + QL+TF+ L+ FAR+H +I++N
Sbjct: 1 MRKRIGIGALNDDEYLK-QYEEVGNELIEQQSDEIASQLSTFQEALKTFAREHATEIKQN 59
Query: 61 PTFRSQFHEMCAKVGVDPL--ASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLI 118
FR+ F ++ K+G+DP S++ WA +G+ +FYY++ V+++E+C AT+ NGGL+
Sbjct: 60 SQFRNTFVKLALKIGLDPFVSGSDESAWAA-VGMNEFYYQVAVRVIEVCYATQMENGGLL 118
Query: 119 NLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNK 177
++ ++C L + ++ E + E D +RA+ L LG G+ + + K+ +RS+P ELN
Sbjct: 119 SVSQVCRFLNEENEAFGHEWLRETDVVRAVDSLAPLGPGFVLEKIAGKQYIRSLPLELNT 178
Query: 178 DHNQILELAQV 188
D N +LE ++
Sbjct: 179 DQNVVLEAVEI 189
>sp|Q12483|SNF8_YEAST Vacuolar-sorting protein SNF8 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SNF8 PE=1 SV=1
Length = 233
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 105/173 (60%), Gaps = 13/173 (7%)
Query: 19 QYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78
+Y + + + + ++ +++QL F+ +L +FA+KH ++++ +P FRS+F MC+ +G+DP
Sbjct: 16 KYNDVNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDP 75
Query: 79 LA---SNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNR 135
L+ +K L + DFYYE+ ++++EIC T+ NGG+I+ QEL + RK N
Sbjct: 76 LSLFDRDK----HLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKV--HFRKLN- 128
Query: 136 EAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQV 188
V DD ++I LK L +E+ + KK +RSVP EL D +ILE+ +
Sbjct: 129 --VGLDDLEKSIDMLKSL-ECFEIFQIRGKKFLRSVPNELTSDQTKILEICSI 178
>sp|Q9FLP0|MA651_ARATH 65-kDa microtubule-associated protein 1 OS=Arabidopsis thaliana
GN=MAP65-1 PE=1 SV=1
Length = 587
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 33/50 (66%)
Query: 32 TDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLAS 81
+DL ++L F+SQL++ ++ + +RK F S H++CA +G+D L++
Sbjct: 153 SDLSLKKLDDFQSQLQELQKEKSDRLRKVLEFVSTVHDLCAVLGLDFLST 202
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 80 ASNKGFWAELLGIGDFY--YELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREA 137
A+ W +LG + Y+LGV+I + +A P N G + L N+ K++ +
Sbjct: 378 ATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPG--HHVMLSNIYALSGKTDEVS 435
Query: 138 VSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQI 182
D +R + +V GY VI V K + S+ E +++ +I
Sbjct: 436 HIRDGMMRNNLRKQV---GYSVIEVENKTYMFSMGDESHQETGEI 477
>sp|Q0TPD5|EX7L_CLOP1 Exodeoxyribonuclease 7 large subunit OS=Clostridium perfringens
(strain ATCC 13124 / NCTC 8237 / Type A) GN=xseA PE=3
SV=1
Length = 400
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 120 LQELCNLLRQRR--KSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNK 177
L+E N L +R+ K+ E ++ + L+ ++ L LG GY VI K K++ V +EL K
Sbjct: 320 LEEKLNFLGKRKIDKAKDELIALNSILQTLNPLNTLGRGYSVIMDKKDKVINEV-SELKK 378
Query: 178 D 178
+
Sbjct: 379 N 379
>sp|Q0SS02|EX7L_CLOPS Exodeoxyribonuclease 7 large subunit OS=Clostridium perfringens
(strain SM101 / Type A) GN=xseA PE=3 SV=1
Length = 400
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 120 LQELCNLLRQRR--KSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNK 177
L+E N L +R+ K+ E ++ + L+ ++ L LG GY VI + K++ +V +EL K
Sbjct: 320 LEEKLNFLGKRKIDKAKDELIALNSILQTLNPLNTLGRGYSVIMDKEDKVINNV-SELKK 378
Query: 178 D 178
+
Sbjct: 379 N 379
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,211,327
Number of Sequences: 539616
Number of extensions: 3015072
Number of successful extensions: 8002
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 7980
Number of HSP's gapped (non-prelim): 31
length of query: 218
length of database: 191,569,459
effective HSP length: 113
effective length of query: 105
effective length of database: 130,592,851
effective search space: 13712249355
effective search space used: 13712249355
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)