Query 027805
Match_columns 218
No_of_seqs 147 out of 1157
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 15:27:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00434 cytosolic glyceraldeh 100.0 6E-79 1.3E-83 550.6 20.9 206 1-208 1-222 (361)
2 PTZ00023 glyceraldehyde-3-phos 100.0 1.6E-70 3.5E-75 494.8 21.8 205 1-208 1-208 (337)
3 PLN02237 glyceraldehyde-3-phos 100.0 1.8E-70 4E-75 505.7 21.4 202 3-208 75-282 (442)
4 COG0057 GapA Glyceraldehyde-3- 100.0 2.6E-70 5.6E-75 487.4 20.3 201 4-208 2-205 (335)
5 PRK15425 gapA glyceraldehyde-3 100.0 1.1E-69 2.4E-74 488.3 21.7 202 3-208 2-204 (331)
6 PRK07403 glyceraldehyde-3-phos 100.0 2.5E-69 5.4E-74 486.8 20.8 201 4-208 2-207 (337)
7 PRK07729 glyceraldehyde-3-phos 100.0 1.4E-68 3E-73 482.6 20.7 202 3-208 2-205 (343)
8 PTZ00353 glycosomal glyceralde 100.0 2E-68 4.3E-73 481.4 21.0 205 3-209 2-209 (342)
9 PLN02272 glyceraldehyde-3-phos 100.0 3.8E-68 8.2E-73 489.2 22.4 203 4-208 86-289 (421)
10 PLN02358 glyceraldehyde-3-phos 100.0 6.6E-68 1.4E-72 478.6 22.4 205 3-208 5-210 (338)
11 PLN03096 glyceraldehyde-3-phos 100.0 5.2E-67 1.1E-71 479.2 21.5 203 3-208 60-265 (395)
12 TIGR01534 GAPDH-I glyceraldehy 100.0 2.2E-66 4.9E-71 466.8 20.6 201 5-208 1-205 (327)
13 PRK08289 glyceraldehyde-3-phos 100.0 1.1E-65 2.4E-70 475.6 19.4 203 3-209 127-343 (477)
14 PRK08955 glyceraldehyde-3-phos 100.0 5.1E-65 1.1E-69 459.1 21.5 202 3-209 2-206 (334)
15 PRK13535 erythrose 4-phosphate 100.0 4.2E-65 9.1E-70 459.8 20.9 201 4-208 2-207 (336)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 4.4E-62 9.6E-67 439.0 20.8 200 5-208 1-205 (325)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 7.3E-58 1.6E-62 396.7 6.9 190 14-209 1-190 (285)
18 PF00044 Gp_dh_N: Glyceraldehy 100.0 1.3E-52 2.9E-57 340.8 12.3 149 4-154 1-151 (151)
19 smart00846 Gp_dh_N Glyceraldeh 100.0 1.3E-47 2.8E-52 310.9 16.6 148 4-154 1-149 (149)
20 TIGR01546 GAPDH-II_archae glyc 100.0 2.6E-44 5.6E-49 324.2 14.4 175 6-208 1-180 (333)
21 PRK04207 glyceraldehyde-3-phos 100.0 3.5E-36 7.5E-41 272.7 15.8 177 4-210 2-185 (341)
22 PRK14874 aspartate-semialdehyd 99.9 3.5E-27 7.7E-32 213.1 14.1 173 4-209 2-198 (334)
23 PRK06901 aspartate-semialdehyd 99.9 2.8E-25 6E-30 199.1 14.3 155 1-187 1-163 (322)
24 TIGR01296 asd_B aspartate-semi 99.9 1E-24 2.2E-29 197.7 14.9 171 5-208 1-200 (339)
25 COG0136 Asd Aspartate-semialde 99.9 1.4E-22 3E-27 182.2 13.3 156 4-188 2-167 (334)
26 TIGR01745 asd_gamma aspartate- 99.9 1.1E-22 2.5E-27 185.6 11.1 156 4-187 1-167 (366)
27 PRK06728 aspartate-semialdehyd 99.8 3.8E-20 8.2E-25 168.3 14.8 155 3-187 5-165 (347)
28 PRK08040 putative semialdehyde 99.8 1.5E-19 3.3E-24 163.9 15.8 153 2-187 3-165 (336)
29 PRK08664 aspartate-semialdehyd 99.8 9.3E-20 2E-24 165.7 14.4 180 1-211 1-198 (349)
30 PRK06598 aspartate-semialdehyd 99.8 5.6E-20 1.2E-24 168.2 12.8 155 4-188 2-169 (369)
31 TIGR00978 asd_EA aspartate-sem 99.8 1.6E-18 3.5E-23 157.1 14.7 166 4-190 1-182 (341)
32 PRK05671 aspartate-semialdehyd 99.8 3E-18 6.6E-23 155.4 14.9 152 3-187 4-164 (336)
33 PLN02383 aspartate semialdehyd 99.8 9.6E-18 2.1E-22 152.5 14.6 152 3-187 7-172 (344)
34 PRK00436 argC N-acetyl-gamma-g 99.7 2.1E-16 4.5E-21 143.6 13.4 159 1-188 1-186 (343)
35 PRK08300 acetaldehyde dehydrog 99.6 5.8E-16 1.3E-20 138.5 10.1 156 1-184 2-160 (302)
36 PF02800 Gp_dh_C: Glyceraldehy 99.6 2E-16 4.4E-21 129.3 5.4 49 159-208 1-49 (157)
37 TIGR01850 argC N-acetyl-gamma- 99.6 2.9E-15 6.3E-20 136.3 12.6 159 4-188 1-186 (346)
38 KOG4777 Aspartate-semialdehyde 99.6 9.3E-16 2E-20 133.7 5.4 168 1-188 1-187 (361)
39 PLN02968 Probable N-acetyl-gam 99.6 2E-14 4.3E-19 132.5 13.1 159 3-189 38-222 (381)
40 PRK11863 N-acetyl-gamma-glutam 99.6 3.9E-14 8.5E-19 127.4 12.3 138 3-185 2-147 (313)
41 TIGR03215 ac_ald_DH_ac acetald 99.5 5.1E-13 1.1E-17 118.8 11.8 153 3-185 1-155 (285)
42 TIGR01851 argC_other N-acetyl- 99.5 4.4E-13 9.6E-18 120.3 11.3 137 4-185 2-146 (310)
43 PF01118 Semialdhyde_dh: Semia 99.0 4.2E-10 9.2E-15 87.5 5.2 112 5-143 1-119 (121)
44 COG0002 ArgC Acetylglutamate s 98.4 1.5E-06 3.2E-11 79.1 10.6 141 3-169 2-167 (349)
45 TIGR01921 DAP-DH diaminopimela 98.3 2.9E-06 6.3E-11 77.0 8.2 92 1-126 1-92 (324)
46 smart00859 Semialdhyde_dh Semi 98.2 3.8E-06 8.3E-11 64.8 6.5 111 5-142 1-120 (122)
47 PRK13303 L-aspartate dehydroge 98.1 9E-06 2E-10 71.5 8.1 92 4-126 2-93 (265)
48 PRK13302 putative L-aspartate 98.1 1.2E-05 2.7E-10 71.0 7.7 92 1-123 4-96 (271)
49 PRK13301 putative L-aspartate 98.1 1.2E-05 2.5E-10 71.2 7.5 144 3-183 2-149 (267)
50 TIGR00036 dapB dihydrodipicoli 98.0 1.6E-05 3.4E-10 70.1 6.4 98 4-126 2-100 (266)
51 PF01113 DapB_N: Dihydrodipico 97.9 4.5E-06 9.8E-11 65.3 1.3 94 4-121 1-95 (124)
52 PRK11579 putative oxidoreducta 97.8 0.00011 2.3E-09 66.5 8.7 95 1-127 1-97 (346)
53 PRK06270 homoserine dehydrogen 97.7 0.00014 3E-09 66.3 7.9 34 3-36 2-44 (341)
54 PF01408 GFO_IDH_MocA: Oxidore 97.7 9.4E-05 2E-09 56.2 5.6 94 4-127 1-95 (120)
55 PRK13304 L-aspartate dehydroge 97.7 0.00015 3.2E-09 63.8 7.3 91 4-126 2-93 (265)
56 PRK00048 dihydrodipicolinate r 97.6 0.00015 3.3E-09 63.4 7.2 84 4-119 2-86 (257)
57 PRK06349 homoserine dehydrogen 97.6 0.00014 3E-09 68.3 6.2 95 1-126 1-105 (426)
58 COG1712 Predicted dinucleotide 97.5 0.00041 8.9E-09 60.2 7.9 153 4-191 1-155 (255)
59 COG0289 DapB Dihydrodipicolina 97.5 0.00072 1.6E-08 59.8 8.8 100 3-126 2-102 (266)
60 PRK10206 putative oxidoreducta 97.1 0.0014 3E-08 59.6 7.2 94 4-127 2-97 (344)
61 COG0673 MviM Predicted dehydro 97.1 0.002 4.4E-08 57.2 8.1 98 1-127 1-100 (342)
62 COG4091 Predicted homoserine d 97.1 0.0026 5.7E-08 58.5 8.5 41 3-43 17-57 (438)
63 PRK08374 homoserine dehydrogen 97.0 0.00081 1.8E-08 61.3 4.5 108 3-126 2-122 (336)
64 PLN02775 Probable dihydrodipic 97.0 0.0022 4.8E-08 57.4 7.1 34 3-37 11-45 (286)
65 PRK06813 homoserine dehydrogen 97.0 0.0013 2.9E-08 60.3 5.5 34 3-36 2-44 (346)
66 PRK06392 homoserine dehydrogen 96.9 0.0016 3.4E-08 59.3 5.5 34 4-37 1-41 (326)
67 COG0460 ThrA Homoserine dehydr 96.7 0.006 1.3E-07 55.7 7.3 36 1-36 1-45 (333)
68 PRK05447 1-deoxy-D-xylulose 5- 96.5 0.0074 1.6E-07 56.1 7.0 110 4-123 2-120 (385)
69 PF03447 NAD_binding_3: Homose 96.5 0.0036 7.8E-08 47.8 4.1 84 10-126 1-90 (117)
70 COG4569 MhpF Acetaldehyde dehy 96.4 0.01 2.3E-07 51.1 6.7 135 3-171 4-147 (310)
71 cd05211 NAD_bind_Glu_Leu_Phe_V 96.3 0.049 1.1E-06 46.7 10.3 35 2-37 22-56 (217)
72 PRK05472 redox-sensing transcr 96.1 0.016 3.5E-07 49.1 6.6 95 3-126 84-179 (213)
73 cd01076 NAD_bind_1_Glu_DH NAD( 96.1 0.073 1.6E-06 46.0 10.7 34 2-36 30-63 (227)
74 PLN02700 homoserine dehydrogen 95.9 0.023 5E-07 52.8 7.1 36 1-36 1-44 (377)
75 PRK09414 glutamate dehydrogena 95.7 0.065 1.4E-06 50.9 9.2 102 3-125 232-343 (445)
76 TIGR02130 dapB_plant dihydrodi 95.5 0.041 9E-07 49.1 6.6 29 4-33 1-30 (275)
77 COG2344 AT-rich DNA-binding pr 95.4 0.035 7.5E-07 47.2 5.5 95 3-126 84-179 (211)
78 COG0569 TrkA K+ transport syst 95.4 0.041 8.9E-07 47.3 6.1 99 4-128 1-103 (225)
79 cd01075 NAD_bind_Leu_Phe_Val_D 95.1 0.097 2.1E-06 44.1 7.5 31 4-36 29-59 (200)
80 PLN02819 lysine-ketoglutarate 95.1 0.041 8.9E-07 57.1 6.1 98 3-126 569-679 (1042)
81 PF02826 2-Hacid_dh_C: D-isome 95.0 0.038 8.3E-07 45.5 4.7 32 4-36 37-68 (178)
82 TIGR03736 PRTRC_ThiF PRTRC sys 95.0 0.077 1.7E-06 46.5 6.7 102 3-111 11-124 (244)
83 PF02629 CoA_binding: CoA bind 95.0 0.039 8.4E-07 41.0 4.1 92 3-126 3-95 (96)
84 PRK07819 3-hydroxybutyryl-CoA 94.7 0.19 4.1E-06 44.7 8.5 149 4-172 6-180 (286)
85 COG1748 LYS9 Saccharopine dehy 94.5 0.15 3.1E-06 47.7 7.6 95 4-121 2-96 (389)
86 PLN02477 glutamate dehydrogena 94.4 0.41 8.8E-06 45.1 10.4 33 4-37 207-239 (410)
87 PF03446 NAD_binding_2: NAD bi 94.3 0.072 1.6E-06 43.1 4.6 31 4-36 2-32 (163)
88 PTZ00082 L-lactate dehydrogena 94.2 0.11 2.4E-06 47.1 6.0 34 3-37 6-39 (321)
89 cd01483 E1_enzyme_family Super 94.2 0.077 1.7E-06 41.7 4.4 44 5-49 1-45 (143)
90 PTZ00117 malate dehydrogenase; 94.2 0.27 5.8E-06 44.4 8.4 34 2-36 4-37 (319)
91 PF03807 F420_oxidored: NADP o 94.0 0.11 2.4E-06 37.7 4.7 40 5-46 1-42 (96)
92 COG1063 Tdh Threonine dehydrog 94.0 0.25 5.4E-06 45.0 8.0 139 5-169 171-312 (350)
93 PLN02696 1-deoxy-D-xylulose-5- 93.9 0.2 4.3E-06 47.7 7.3 112 4-125 58-180 (454)
94 PRK08507 prephenate dehydrogen 93.8 0.25 5.4E-06 43.2 7.4 31 5-36 2-33 (275)
95 PRK07634 pyrroline-5-carboxyla 93.5 0.16 3.4E-06 43.3 5.4 36 1-36 1-40 (245)
96 PTZ00079 NADP-specific glutama 93.4 0.51 1.1E-05 45.0 9.0 101 4-120 238-348 (454)
97 PRK08410 2-hydroxyacid dehydro 93.3 0.11 2.4E-06 46.7 4.4 30 4-34 146-175 (311)
98 PRK09466 metL bifunctional asp 93.2 0.085 1.8E-06 53.6 3.7 35 2-36 457-500 (810)
99 KOG2741 Dimeric dihydrodiol de 93.1 0.35 7.5E-06 44.5 7.2 98 3-127 6-105 (351)
100 PRK06487 glycerate dehydrogena 93.1 0.14 3E-06 46.3 4.6 30 4-34 149-178 (317)
101 PRK09436 thrA bifunctional asp 92.9 0.11 2.4E-06 52.8 4.0 35 2-36 464-506 (819)
102 COG0111 SerA Phosphoglycerate 92.8 0.15 3.2E-06 46.5 4.4 30 4-34 143-172 (324)
103 PF03435 Saccharop_dh: Sacchar 92.7 0.19 4.1E-06 46.0 5.1 97 6-125 1-97 (386)
104 PRK06932 glycerate dehydrogena 92.7 0.16 3.5E-06 45.9 4.4 29 4-33 148-176 (314)
105 PRK11880 pyrroline-5-carboxyla 92.6 0.23 4.9E-06 43.0 5.2 35 1-36 1-36 (267)
106 PLN02928 oxidoreductase family 92.3 0.19 4.1E-06 46.0 4.4 30 4-34 160-189 (347)
107 PRK07574 formate dehydrogenase 92.3 0.19 4.1E-06 46.9 4.5 30 4-34 193-222 (385)
108 COG1052 LdhA Lactate dehydroge 92.1 0.19 4.2E-06 45.7 4.2 30 4-34 147-176 (324)
109 PF05368 NmrA: NmrA-like famil 92.1 0.22 4.8E-06 41.9 4.3 96 6-126 1-103 (233)
110 TIGR01761 thiaz-red thiazoliny 92.0 0.24 5.2E-06 45.5 4.8 94 3-127 3-99 (343)
111 PRK06436 glycerate dehydrogena 91.9 0.23 4.9E-06 44.8 4.5 31 4-35 123-153 (303)
112 PRK08268 3-hydroxy-acyl-CoA de 91.9 0.23 5E-06 47.7 4.8 31 4-36 8-38 (507)
113 PRK13243 glyoxylate reductase; 91.9 0.22 4.9E-06 45.2 4.4 31 4-36 151-181 (333)
114 PRK11790 D-3-phosphoglycerate 91.9 0.22 4.9E-06 46.6 4.5 30 4-34 152-181 (409)
115 PRK15409 bifunctional glyoxyla 91.8 0.22 4.8E-06 45.2 4.3 32 4-37 146-178 (323)
116 PRK14030 glutamate dehydrogena 91.7 1.3 2.8E-05 42.2 9.4 103 3-120 228-339 (445)
117 TIGR01202 bchC 2-desacetyl-2-h 91.7 2.2 4.7E-05 37.7 10.4 143 5-188 147-291 (308)
118 PF10727 Rossmann-like: Rossma 91.5 0.17 3.8E-06 39.9 2.9 33 3-36 10-42 (127)
119 PRK13403 ketol-acid reductoiso 91.5 0.28 6.1E-06 44.9 4.6 32 4-36 17-48 (335)
120 PRK11559 garR tartronate semia 91.5 0.29 6.2E-06 43.1 4.5 33 1-36 1-33 (296)
121 PLN02256 arogenate dehydrogena 91.3 0.36 7.8E-06 43.4 5.1 33 2-35 35-67 (304)
122 cd08230 glucose_DH Glucose deh 91.3 3.7 7.9E-05 36.7 11.6 141 4-169 174-316 (355)
123 PRK15469 ghrA bifunctional gly 91.0 0.35 7.5E-06 43.7 4.6 30 4-34 137-166 (312)
124 PRK12480 D-lactate dehydrogena 90.9 0.35 7.6E-06 44.0 4.7 30 4-34 147-176 (330)
125 PLN02602 lactate dehydrogenase 90.8 0.52 1.1E-05 43.4 5.7 148 4-178 38-203 (350)
126 PRK06223 malate dehydrogenase; 90.8 0.45 9.7E-06 42.2 5.2 32 4-36 3-34 (307)
127 PRK15438 erythronate-4-phospha 90.8 0.34 7.3E-06 45.1 4.5 31 4-36 117-147 (378)
128 PLN02306 hydroxypyruvate reduc 90.7 0.35 7.7E-06 45.0 4.6 32 4-37 166-198 (386)
129 cd05313 NAD_bind_2_Glu_DH NAD( 90.7 0.47 1E-05 41.9 5.0 33 3-36 38-70 (254)
130 PLN03139 formate dehydrogenase 90.6 0.33 7.2E-06 45.3 4.3 31 4-36 200-230 (386)
131 PRK08644 thiamine biosynthesis 90.5 0.27 5.8E-06 41.9 3.3 33 3-36 28-60 (212)
132 PRK14031 glutamate dehydrogena 90.5 1.2 2.5E-05 42.5 7.8 32 4-36 229-260 (444)
133 cd05293 LDH_1 A subgroup of L- 90.3 0.58 1.3E-05 42.3 5.5 34 3-36 3-36 (312)
134 PF00056 Ldh_1_N: lactate/mala 90.3 0.39 8.4E-06 38.2 3.9 79 4-104 1-80 (141)
135 PRK08605 D-lactate dehydrogena 90.2 0.43 9.3E-06 43.3 4.6 32 4-36 147-178 (332)
136 cd00757 ThiF_MoeB_HesA_family 90.0 0.28 6.1E-06 41.9 3.0 33 3-36 21-53 (228)
137 COG2085 Predicted dinucleotide 89.9 1.2 2.5E-05 38.4 6.7 92 4-126 2-93 (211)
138 cd00401 AdoHcyase S-adenosyl-L 89.8 0.83 1.8E-05 43.0 6.2 31 4-36 203-233 (413)
139 PRK11064 wecC UDP-N-acetyl-D-m 89.5 0.54 1.2E-05 44.0 4.8 33 1-34 1-33 (415)
140 cd05290 LDH_3 A subgroup of L- 89.5 0.66 1.4E-05 41.8 5.1 32 5-36 1-32 (307)
141 cd01338 MDH_choloroplast_like 89.5 1 2.3E-05 40.8 6.4 147 3-174 2-173 (322)
142 PF13380 CoA_binding_2: CoA bi 89.2 2.6 5.7E-05 32.4 7.7 83 5-126 2-88 (116)
143 PRK12475 thiamine/molybdopteri 89.0 0.78 1.7E-05 41.9 5.3 33 3-36 24-56 (338)
144 PRK00257 erythronate-4-phospha 88.9 0.62 1.4E-05 43.4 4.7 31 4-36 117-147 (381)
145 cd01487 E1_ThiF_like E1_ThiF_l 88.8 0.46 9.9E-06 39.2 3.3 31 5-36 1-31 (174)
146 PLN00016 RNA-binding protein; 88.8 1.6 3.4E-05 39.8 7.2 33 3-36 52-89 (378)
147 PRK07679 pyrroline-5-carboxyla 88.5 0.82 1.8E-05 40.1 5.0 26 1-26 1-26 (279)
148 PRK06476 pyrroline-5-carboxyla 88.5 0.85 1.8E-05 39.4 5.0 32 5-36 2-34 (258)
149 PRK08229 2-dehydropantoate 2-r 88.4 0.72 1.6E-05 41.3 4.6 32 1-34 1-32 (341)
150 PLN02712 arogenate dehydrogena 88.3 0.75 1.6E-05 45.8 5.0 32 3-35 369-400 (667)
151 TIGR01327 PGDH D-3-phosphoglyc 88.2 0.67 1.4E-05 44.8 4.5 30 4-34 139-168 (525)
152 PRK07417 arogenate dehydrogena 88.0 0.76 1.6E-05 40.4 4.4 29 5-34 2-30 (279)
153 PRK13581 D-3-phosphoglycerate 87.8 0.71 1.5E-05 44.6 4.5 30 4-34 141-170 (526)
154 TIGR03366 HpnZ_proposed putati 87.7 4.5 9.8E-05 35.0 9.1 137 4-168 122-260 (280)
155 PRK05442 malate dehydrogenase; 87.6 1.2 2.5E-05 40.6 5.5 151 1-177 1-178 (326)
156 PLN02688 pyrroline-5-carboxyla 87.5 1.1 2.3E-05 38.7 5.0 33 4-36 1-36 (266)
157 COG2910 Putative NADH-flavin r 87.3 0.85 1.9E-05 38.9 4.0 31 4-35 1-32 (211)
158 PRK09599 6-phosphogluconate de 87.2 0.91 2E-05 40.3 4.5 30 5-36 2-31 (301)
159 PLN02712 arogenate dehydrogena 87.2 0.89 1.9E-05 45.3 4.8 32 3-35 52-83 (667)
160 TIGR02356 adenyl_thiF thiazole 87.0 0.74 1.6E-05 38.8 3.6 41 3-44 21-62 (202)
161 PRK07502 cyclohexadienyl dehyd 86.9 1 2.2E-05 40.1 4.6 33 3-36 6-39 (307)
162 cd00755 YgdL_like Family of ac 86.9 0.94 2E-05 39.3 4.3 102 3-108 11-117 (231)
163 KOG4354 N-acetyl-gamma-glutamy 86.7 3.2 7E-05 37.0 7.4 140 3-167 19-171 (340)
164 TIGR02354 thiF_fam2 thiamine b 86.7 0.43 9.2E-06 40.4 2.0 33 3-36 21-53 (200)
165 PRK15116 sulfur acceptor prote 86.7 0.98 2.1E-05 40.1 4.3 24 3-26 30-53 (268)
166 PRK09880 L-idonate 5-dehydroge 86.6 4.2 9E-05 36.3 8.5 94 4-123 171-265 (343)
167 PF03721 UDPG_MGDP_dh_N: UDP-g 86.6 1 2.2E-05 37.6 4.1 29 4-33 1-29 (185)
168 KOG0455 Homoserine dehydrogena 86.5 0.84 1.8E-05 40.8 3.7 36 1-36 1-44 (364)
169 KOG0069 Glyoxylate/hydroxypyru 86.4 0.55 1.2E-05 43.1 2.6 22 4-25 163-184 (336)
170 cd05294 LDH-like_MDH_nadp A la 86.3 1.4 3.1E-05 39.6 5.2 30 4-33 1-32 (309)
171 PRK05690 molybdopterin biosynt 86.3 0.66 1.4E-05 40.4 3.0 115 3-126 32-154 (245)
172 PRK12490 6-phosphogluconate de 86.0 1.2 2.5E-05 39.6 4.5 30 5-36 2-31 (299)
173 TIGR00872 gnd_rel 6-phosphoglu 85.9 1.2 2.5E-05 39.6 4.5 30 5-36 2-31 (298)
174 TIGR02355 moeB molybdopterin s 85.5 0.85 1.8E-05 39.6 3.3 111 3-118 24-140 (240)
175 PRK00094 gpsA NAD(P)H-dependen 85.3 1.5 3.2E-05 38.7 4.9 29 4-33 2-30 (325)
176 cd08237 ribitol-5-phosphate_DH 85.3 5.4 0.00012 35.6 8.5 128 4-169 165-297 (341)
177 PLN02545 3-hydroxybutyryl-CoA 84.9 1.6 3.5E-05 38.4 4.9 34 1-36 1-35 (295)
178 PTZ00431 pyrroline carboxylate 84.9 1.5 3.2E-05 38.2 4.6 26 1-26 1-26 (260)
179 PRK12491 pyrroline-5-carboxyla 84.7 1.7 3.6E-05 38.4 4.9 24 3-26 2-25 (272)
180 cd08239 THR_DH_like L-threonin 84.7 5.1 0.00011 35.3 8.0 138 4-169 165-303 (339)
181 cd01486 Apg7 Apg7 is an E1-lik 84.3 0.64 1.4E-05 42.2 2.0 31 5-36 1-31 (307)
182 TIGR01505 tartro_sem_red 2-hyd 84.2 1.2 2.7E-05 39.0 3.8 30 5-36 1-30 (291)
183 TIGR00465 ilvC ketol-acid redu 84.1 1.8 3.8E-05 39.3 4.8 33 3-36 3-35 (314)
184 PRK07530 3-hydroxybutyryl-CoA 84.0 1.9 4E-05 38.0 4.9 32 3-36 4-35 (292)
185 PRK05479 ketol-acid reductoiso 83.9 1.7 3.6E-05 39.8 4.6 31 4-35 18-48 (330)
186 PRK05808 3-hydroxybutyryl-CoA 83.7 1.8 3.9E-05 37.9 4.6 34 1-36 1-34 (282)
187 COG3804 Uncharacterized conser 83.7 1.8 3.8E-05 39.3 4.5 35 3-37 2-36 (350)
188 PRK06046 alanine dehydrogenase 83.7 1.8 3.9E-05 39.1 4.7 34 4-37 130-163 (326)
189 PRK15059 tartronate semialdehy 83.6 1.7 3.6E-05 38.7 4.4 28 5-33 2-29 (292)
190 COG0287 TyrA Prephenate dehydr 83.5 1.8 3.8E-05 38.7 4.5 32 2-33 2-34 (279)
191 COG0039 Mdh Malate/lactate deh 83.5 4.1 8.8E-05 37.1 6.8 150 4-184 1-170 (313)
192 COG1062 AdhC Zn-dependent alco 83.2 4 8.8E-05 37.8 6.7 101 4-127 187-288 (366)
193 PRK08818 prephenate dehydrogen 83.1 2 4.3E-05 39.9 4.8 31 3-33 4-35 (370)
194 PRK07877 hypothetical protein; 83.0 0.66 1.4E-05 46.7 1.7 118 3-126 107-228 (722)
195 PRK06035 3-hydroxyacyl-CoA deh 82.8 2.2 4.8E-05 37.5 4.9 34 1-36 1-34 (291)
196 TIGR02853 spore_dpaA dipicolin 82.8 1.9 4.1E-05 38.4 4.5 30 4-34 152-181 (287)
197 cd08298 CAD2 Cinnamyl alcohol 82.7 22 0.00048 30.9 11.2 127 5-168 170-296 (329)
198 PF02670 DXP_reductoisom: 1-de 82.5 2.6 5.7E-05 33.5 4.7 108 6-123 1-119 (129)
199 PRK07680 late competence prote 82.5 2.6 5.7E-05 36.7 5.2 32 5-36 2-35 (273)
200 PRK06718 precorrin-2 dehydroge 82.2 21 0.00046 30.0 10.4 30 4-34 11-40 (202)
201 PRK06928 pyrroline-5-carboxyla 81.9 2.5 5.3E-05 37.2 4.8 32 4-35 2-36 (277)
202 PF00208 ELFV_dehydrog: Glutam 81.7 2.4 5.3E-05 37.0 4.6 105 3-125 32-146 (244)
203 PRK14618 NAD(P)H-dependent gly 81.7 2.5 5.5E-05 37.8 4.9 31 3-34 4-34 (328)
204 PRK15461 NADH-dependent gamma- 81.5 2.3 4.9E-05 37.8 4.4 31 4-36 2-32 (296)
205 COG0345 ProC Pyrroline-5-carbo 81.4 2.6 5.7E-05 37.5 4.7 39 4-44 2-42 (266)
206 PRK11154 fadJ multifunctional 81.2 1.3 2.7E-05 44.4 3.0 151 4-174 310-485 (708)
207 PRK14619 NAD(P)H-dependent gly 81.2 2.4 5.3E-05 37.7 4.5 31 3-34 4-34 (308)
208 cd01484 E1-2_like Ubiquitin ac 81.2 2.2 4.8E-05 37.0 4.2 115 5-127 1-124 (234)
209 TIGR03026 NDP-sugDHase nucleot 81.1 2.1 4.7E-05 39.7 4.3 29 5-34 2-30 (411)
210 PRK07688 thiamine/molybdopteri 80.6 2.9 6.4E-05 38.2 4.9 41 3-44 24-65 (339)
211 PRK03369 murD UDP-N-acetylmura 80.5 7.2 0.00016 37.1 7.7 31 4-36 13-43 (488)
212 PRK06130 3-hydroxybutyryl-CoA 80.5 3 6.5E-05 36.9 4.9 30 4-34 5-34 (311)
213 PF02737 3HCDH_N: 3-hydroxyacy 80.2 3 6.6E-05 34.4 4.5 150 5-173 1-173 (180)
214 PRK06249 2-dehydropantoate 2-r 80.2 3.1 6.7E-05 37.1 4.8 31 2-33 4-34 (313)
215 COG1023 Gnd Predicted 6-phosph 80.1 1.9 4.1E-05 38.3 3.3 42 4-49 1-42 (300)
216 TIGR03201 dearomat_had 6-hydro 80.1 18 0.0004 32.2 9.8 138 4-169 168-313 (349)
217 PRK05597 molybdopterin biosynt 80.1 1.6 3.6E-05 40.0 3.1 116 3-126 28-150 (355)
218 PTZ00075 Adenosylhomocysteinas 79.9 2.8 6E-05 40.3 4.6 29 4-33 255-283 (476)
219 PRK05600 thiamine biosynthesis 79.7 1.3 2.9E-05 40.9 2.4 112 3-119 41-158 (370)
220 cd01065 NAD_bind_Shikimate_DH 79.4 5 0.00011 31.3 5.3 33 3-36 19-51 (155)
221 PF02254 TrkA_N: TrkA-N domain 78.7 4.3 9.3E-05 30.1 4.6 29 6-35 1-29 (116)
222 KOG1502 Flavonol reductase/cin 78.6 10 0.00023 34.7 7.8 47 3-50 6-53 (327)
223 KOG0068 D-3-phosphoglycerate d 78.6 3 6.5E-05 38.7 4.2 29 4-33 147-175 (406)
224 PF01210 NAD_Gly3P_dh_N: NAD-d 78.6 4.3 9.4E-05 32.5 4.8 100 5-126 1-103 (157)
225 PF13460 NAD_binding_10: NADH( 78.4 3.9 8.4E-05 32.6 4.5 30 6-36 1-31 (183)
226 PRK00066 ldh L-lactate dehydro 78.2 4.3 9.3E-05 36.6 5.2 33 4-36 7-39 (315)
227 PTZ00142 6-phosphogluconate de 78.1 2.9 6.2E-05 40.0 4.2 31 4-36 2-32 (470)
228 PRK07531 bifunctional 3-hydrox 78.1 3.6 7.8E-05 39.4 4.9 32 3-36 4-35 (495)
229 cd08242 MDR_like Medium chain 77.7 20 0.00043 31.1 9.1 84 4-119 157-240 (319)
230 PRK06129 3-hydroxyacyl-CoA deh 77.4 3.7 8E-05 36.5 4.5 31 4-36 3-33 (308)
231 COG1064 AdhP Zn-dependent alco 77.3 15 0.00033 33.8 8.5 136 4-174 168-306 (339)
232 cd08281 liver_ADH_like1 Zinc-d 77.3 6.3 0.00014 35.6 6.0 99 4-126 193-292 (371)
233 PRK08293 3-hydroxybutyryl-CoA 77.1 4.5 9.8E-05 35.5 4.9 32 1-33 1-32 (287)
234 cd00704 MDH Malate dehydrogena 76.9 7.2 0.00016 35.4 6.2 144 4-174 1-171 (323)
235 PRK15057 UDP-glucose 6-dehydro 76.9 3.2 7E-05 38.6 4.1 38 5-47 2-39 (388)
236 COG0771 MurD UDP-N-acetylmuram 76.8 14 0.00031 35.2 8.4 88 4-119 8-95 (448)
237 TIGR01759 MalateDH-SF1 malate 76.7 5.5 0.00012 36.2 5.4 24 3-26 3-27 (323)
238 TIGR00243 Dxr 1-deoxy-D-xylulo 76.6 4.6 9.9E-05 37.9 4.9 42 4-46 2-45 (389)
239 TIGR02437 FadB fatty oxidation 76.5 2.6 5.6E-05 42.3 3.5 31 4-36 314-344 (714)
240 PRK11908 NAD-dependent epimera 76.3 4.6 0.0001 36.0 4.8 31 4-34 2-33 (347)
241 cd05213 NAD_bind_Glutamyl_tRNA 76.3 4.1 8.8E-05 36.5 4.4 33 3-36 178-210 (311)
242 PRK00683 murD UDP-N-acetylmura 76.0 4.4 9.5E-05 37.6 4.7 34 1-36 1-34 (418)
243 PRK11730 fadB multifunctional 75.5 3 6.6E-05 41.8 3.7 31 4-36 314-344 (715)
244 PLN02494 adenosylhomocysteinas 75.2 4.5 9.7E-05 38.9 4.6 30 4-34 255-284 (477)
245 TIGR01381 E1_like_apg7 E1-like 75.2 2.2 4.9E-05 42.4 2.6 33 3-36 338-370 (664)
246 PRK06719 precorrin-2 dehydroge 75.1 42 0.00091 27.1 10.6 30 4-34 14-43 (157)
247 TIGR02441 fa_ox_alpha_mit fatt 74.9 1.8 3.9E-05 43.6 2.0 31 4-36 336-366 (737)
248 TIGR00936 ahcY adenosylhomocys 74.9 4.5 9.7E-05 38.1 4.5 29 4-33 196-224 (406)
249 TIGR01915 npdG NADPH-dependent 74.9 5.5 0.00012 33.6 4.7 29 4-33 1-30 (219)
250 PRK01438 murD UDP-N-acetylmura 74.9 22 0.00048 33.4 9.2 30 4-34 17-46 (480)
251 PRK09424 pntA NAD(P) transhydr 74.8 13 0.00027 36.2 7.6 31 4-36 166-196 (509)
252 PRK08306 dipicolinate synthase 74.8 5 0.00011 35.8 4.6 30 4-34 153-182 (296)
253 PRK06444 prephenate dehydrogen 74.8 4.7 0.0001 34.1 4.2 33 4-36 1-40 (197)
254 PRK11199 tyrA bifunctional cho 74.6 4.4 9.4E-05 37.4 4.3 29 4-33 99-128 (374)
255 PRK09260 3-hydroxybutyryl-CoA 74.3 4.8 0.0001 35.3 4.3 31 4-36 2-32 (288)
256 PF00899 ThiF: ThiF family; I 74.2 6.5 0.00014 30.4 4.6 105 3-112 2-111 (135)
257 PLN02586 probable cinnamyl alc 74.2 16 0.00034 33.0 7.8 31 4-35 185-215 (360)
258 PLN02427 UDP-apiose/xylose syn 74.0 5.6 0.00012 36.1 4.8 33 3-35 14-47 (386)
259 cd05292 LDH_2 A subgroup of L- 74.0 5 0.00011 35.9 4.4 33 4-36 1-33 (308)
260 PLN02350 phosphogluconate dehy 73.9 3.4 7.4E-05 39.8 3.5 127 4-144 7-157 (493)
261 PLN02178 cinnamyl-alcohol dehy 73.7 18 0.00038 33.1 8.0 134 4-169 180-314 (375)
262 PLN00112 malate dehydrogenase 73.5 7.3 0.00016 37.1 5.5 23 3-25 100-123 (444)
263 PRK08219 short chain dehydroge 73.4 5.6 0.00012 32.5 4.3 33 1-35 1-34 (227)
264 PLN02514 cinnamyl-alcohol dehy 73.2 25 0.00054 31.6 8.8 138 4-174 182-320 (357)
265 cd01339 LDH-like_MDH L-lactate 73.0 5.7 0.00012 35.2 4.5 31 6-37 1-31 (300)
266 PRK06522 2-dehydropantoate 2-r 73.0 6 0.00013 34.4 4.6 30 4-34 1-30 (304)
267 PRK15182 Vi polysaccharide bio 72.5 5 0.00011 37.8 4.2 30 3-34 6-35 (425)
268 PRK06545 prephenate dehydrogen 72.1 5.3 0.00011 36.5 4.2 28 5-32 2-30 (359)
269 TIGR03451 mycoS_dep_FDH mycoth 72.1 36 0.00078 30.4 9.5 30 4-34 178-208 (358)
270 PRK08618 ornithine cyclodeamin 72.0 6.4 0.00014 35.5 4.7 33 4-36 128-160 (325)
271 PRK10083 putative oxidoreducta 71.7 14 0.00031 32.3 6.7 99 4-125 162-260 (339)
272 PRK09496 trkA potassium transp 71.5 6 0.00013 36.6 4.5 30 4-34 1-30 (453)
273 CHL00194 ycf39 Ycf39; Provisio 71.4 6.8 0.00015 34.6 4.6 30 5-35 2-32 (317)
274 PRK08328 hypothetical protein; 71.3 7 0.00015 33.6 4.5 33 3-36 27-59 (231)
275 PLN02740 Alcohol dehydrogenase 71.3 11 0.00023 34.3 6.0 30 4-34 200-230 (381)
276 PTZ00325 malate dehydrogenase; 71.2 7.1 0.00015 35.5 4.7 141 3-174 8-173 (321)
277 TIGR02371 ala_DH_arch alanine 71.2 8.2 0.00018 34.9 5.1 34 4-37 129-162 (325)
278 COG0334 GdhA Glutamate dehydro 71.1 6.9 0.00015 36.9 4.7 34 4-38 208-241 (411)
279 PRK14106 murD UDP-N-acetylmura 70.9 19 0.0004 33.4 7.6 32 3-36 5-36 (450)
280 KOG0022 Alcohol dehydrogenase, 70.8 10 0.00022 35.0 5.5 100 4-126 194-296 (375)
281 PF07991 IlvN: Acetohydroxy ac 70.4 6.8 0.00015 32.5 4.0 31 4-35 5-35 (165)
282 PRK07878 molybdopterin biosynt 70.3 3.4 7.4E-05 38.4 2.5 117 3-126 42-164 (392)
283 TIGR00873 gnd 6-phosphoglucona 70.1 5.1 0.00011 38.3 3.7 29 5-34 1-29 (467)
284 PRK06153 hypothetical protein; 70.0 3 6.4E-05 39.2 2.0 103 4-110 177-283 (393)
285 KOG2380 Prephenate dehydrogena 69.8 5.7 0.00012 37.1 3.7 24 3-26 52-75 (480)
286 KOG3923 D-aspartate oxidase [A 69.7 6.7 0.00015 35.8 4.1 37 1-37 1-43 (342)
287 TIGR01757 Malate-DH_plant mala 69.5 7.3 0.00016 36.5 4.5 24 3-26 44-68 (387)
288 cd05191 NAD_bind_amino_acid_DH 69.2 11 0.00024 26.9 4.6 22 4-25 24-45 (86)
289 PRK04690 murD UDP-N-acetylmura 69.1 35 0.00077 32.3 9.2 31 4-36 9-39 (468)
290 PLN02353 probable UDP-glucose 68.7 7.9 0.00017 37.1 4.7 31 4-34 2-33 (473)
291 PRK07411 hypothetical protein; 68.6 3.9 8.5E-05 38.0 2.6 110 3-119 38-155 (390)
292 cd08301 alcohol_DH_plants Plan 68.6 14 0.0003 33.2 6.0 31 4-35 189-220 (369)
293 PRK03806 murD UDP-N-acetylmura 68.5 42 0.00091 31.1 9.4 89 4-125 7-95 (438)
294 cd00650 LDH_MDH_like NAD-depen 68.3 10 0.00022 32.9 5.0 31 6-36 1-34 (263)
295 COG0373 HemA Glutamyl-tRNA red 68.2 17 0.00037 34.4 6.7 32 4-35 179-210 (414)
296 TIGR02819 fdhA_non_GSH formald 68.2 35 0.00075 31.4 8.7 32 4-36 187-218 (393)
297 cd05291 HicDH_like L-2-hydroxy 68.1 9.2 0.0002 34.1 4.7 29 5-33 2-31 (306)
298 PRK07066 3-hydroxybutyryl-CoA 67.7 9.9 0.00021 34.6 4.9 31 4-36 8-38 (321)
299 PRK05476 S-adenosyl-L-homocyst 67.7 8.2 0.00018 36.6 4.5 29 4-33 213-241 (425)
300 TIGR01035 hemA glutamyl-tRNA r 67.4 8.5 0.00018 36.0 4.6 31 4-34 181-211 (417)
301 PRK10309 galactitol-1-phosphat 67.4 20 0.00042 31.8 6.7 29 4-33 162-191 (347)
302 PRK06988 putative formyltransf 67.3 8.6 0.00019 34.7 4.4 33 1-35 1-33 (312)
303 PRK08655 prephenate dehydrogen 67.2 8.8 0.00019 36.2 4.6 30 4-34 1-31 (437)
304 TIGR01087 murD UDP-N-acetylmur 67.0 27 0.00059 32.3 7.8 30 5-36 1-30 (433)
305 cd01337 MDH_glyoxysomal_mitoch 66.8 9.6 0.00021 34.5 4.6 33 4-36 1-34 (310)
306 PRK14851 hypothetical protein; 66.6 2.5 5.4E-05 42.3 0.9 99 3-105 43-145 (679)
307 COG0743 Dxr 1-deoxy-D-xylulose 66.2 9 0.0002 35.7 4.3 40 4-44 2-43 (385)
308 cd08296 CAD_like Cinnamyl alco 66.0 25 0.00055 30.9 7.1 95 5-125 166-260 (333)
309 PRK12921 2-dehydropantoate 2-r 65.5 9.7 0.00021 33.2 4.3 30 4-34 1-30 (305)
310 TIGR00561 pntA NAD(P) transhyd 65.1 19 0.00041 35.0 6.5 31 4-36 165-195 (511)
311 PRK03659 glutathione-regulated 65.0 9 0.0002 37.6 4.4 39 4-46 401-439 (601)
312 PRK14573 bifunctional D-alanyl 64.4 26 0.00057 35.5 7.7 34 1-36 1-36 (809)
313 TIGR01763 MalateDH_bact malate 64.2 13 0.00029 33.3 5.0 143 4-174 2-163 (305)
314 PRK04663 murD UDP-N-acetylmura 63.9 53 0.0011 30.6 9.1 32 4-36 8-40 (438)
315 COG2084 MmsB 3-hydroxyisobutyr 63.7 11 0.00023 34.0 4.2 31 4-35 1-31 (286)
316 PRK02318 mannitol-1-phosphate 63.5 9.3 0.0002 35.2 4.0 31 4-34 1-31 (381)
317 cd01336 MDH_cytoplasmic_cytoso 63.3 13 0.00027 33.8 4.7 31 3-33 2-39 (325)
318 TIGR01019 sucCoAalpha succinyl 63.0 37 0.00081 30.4 7.6 32 3-34 6-38 (286)
319 cd08255 2-desacetyl-2-hydroxye 62.9 45 0.00098 28.1 7.9 90 4-123 99-189 (277)
320 PRK15181 Vi polysaccharide bio 62.9 12 0.00027 33.4 4.6 33 2-35 14-47 (348)
321 COG1250 FadB 3-hydroxyacyl-CoA 62.3 11 0.00024 34.2 4.1 35 1-37 1-35 (307)
322 PRK03562 glutathione-regulated 62.3 11 0.00023 37.3 4.3 36 4-43 401-436 (621)
323 PRK07340 ornithine cyclodeamin 62.1 13 0.00027 33.4 4.4 33 4-36 126-158 (304)
324 TIGR02279 PaaC-3OHAcCoADH 3-hy 62.1 12 0.00026 36.1 4.5 29 4-33 6-34 (503)
325 TIGR02717 AcCoA-syn-alpha acet 61.9 39 0.00085 31.9 7.9 32 3-34 7-43 (447)
326 TIGR02818 adh_III_F_hyde S-(hy 61.5 21 0.00045 32.2 5.8 30 4-34 187-217 (368)
327 PLN02827 Alcohol dehydrogenase 60.8 21 0.00045 32.5 5.7 29 4-33 195-224 (378)
328 PRK01710 murD UDP-N-acetylmura 60.8 41 0.00088 31.6 7.8 31 4-36 15-45 (458)
329 PRK00141 murD UDP-N-acetylmura 60.6 50 0.0011 31.3 8.4 31 4-36 16-46 (473)
330 cd08278 benzyl_alcohol_DH Benz 60.5 18 0.00038 32.5 5.2 96 4-123 188-284 (365)
331 PLN02240 UDP-glucose 4-epimera 59.9 16 0.00035 32.2 4.7 33 2-35 4-37 (352)
332 PRK14806 bifunctional cyclohex 59.9 14 0.0003 36.8 4.7 32 4-36 4-36 (735)
333 COG0677 WecC UDP-N-acetyl-D-ma 59.8 10 0.00022 35.9 3.5 29 4-33 10-38 (436)
334 PRK03803 murD UDP-N-acetylmura 59.8 53 0.0012 30.6 8.4 30 5-36 8-37 (448)
335 PLN00106 malate dehydrogenase 59.8 15 0.00032 33.5 4.5 33 4-36 19-52 (323)
336 cd05283 CAD1 Cinnamyl alcohol 59.7 63 0.0014 28.4 8.5 87 4-118 171-257 (337)
337 PF01488 Shikimate_DH: Shikima 59.4 21 0.00046 27.8 4.9 31 4-35 13-44 (135)
338 PRK08223 hypothetical protein; 59.4 8.2 0.00018 34.7 2.7 98 3-104 27-128 (287)
339 cd01485 E1-1_like Ubiquitin ac 59.2 11 0.00025 31.5 3.4 33 3-36 19-51 (198)
340 TIGR01771 L-LDH-NAD L-lactate 59.2 12 0.00027 33.4 3.9 29 8-36 1-29 (299)
341 PRK05708 2-dehydropantoate 2-r 58.9 16 0.00034 32.6 4.5 31 3-34 2-32 (305)
342 cd08277 liver_alcohol_DH_like 58.4 29 0.00063 31.2 6.2 30 4-34 186-216 (365)
343 cd08245 CAD Cinnamyl alcohol d 58.3 53 0.0011 28.5 7.7 92 4-123 164-255 (330)
344 TIGR00518 alaDH alanine dehydr 58.3 16 0.00035 33.7 4.5 30 4-34 168-197 (370)
345 KOG1399 Flavin-containing mono 58.3 11 0.00024 35.9 3.5 24 2-25 5-28 (448)
346 COG1179 Dinucleotide-utilizing 58.2 13 0.00029 32.9 3.8 123 4-134 31-164 (263)
347 cd05188 MDR Medium chain reduc 57.8 52 0.0011 27.1 7.3 31 4-35 136-166 (271)
348 PRK06019 phosphoribosylaminoim 57.7 18 0.00039 33.0 4.8 30 4-34 3-32 (372)
349 cd08287 FDH_like_ADH3 formalde 57.7 60 0.0013 28.4 8.0 136 5-168 171-308 (345)
350 PF00107 ADH_zinc_N: Zinc-bind 57.7 4.6 9.9E-05 30.4 0.7 69 92-164 57-126 (130)
351 PRK10669 putative cation:proto 57.5 14 0.00031 35.6 4.2 31 4-35 418-448 (558)
352 PRK02472 murD UDP-N-acetylmura 57.1 56 0.0012 30.2 8.0 31 4-36 6-36 (447)
353 PF02558 ApbA: Ketopantoate re 57.1 21 0.00046 27.6 4.5 30 6-36 1-30 (151)
354 TIGR01470 cysG_Nterm siroheme 57.1 93 0.002 26.2 8.7 30 4-34 10-39 (205)
355 COG5322 Predicted dehydrogenas 56.5 44 0.00095 30.4 6.7 43 94-138 231-274 (351)
356 PRK07236 hypothetical protein; 56.4 18 0.00039 32.8 4.5 32 1-33 4-35 (386)
357 PRK00045 hemA glutamyl-tRNA re 56.1 18 0.00039 33.8 4.6 30 4-34 183-213 (423)
358 cd08238 sorbose_phosphate_red 56.1 1.6E+02 0.0035 26.9 11.6 34 92-125 256-289 (410)
359 cd08233 butanediol_DH_like (2R 55.9 94 0.002 27.4 9.0 30 4-34 174-204 (351)
360 PLN02858 fructose-bisphosphate 55.7 16 0.00034 39.7 4.5 31 4-36 325-355 (1378)
361 cd08254 hydroxyacyl_CoA_DH 6-h 55.7 30 0.00066 29.9 5.7 95 5-123 168-262 (338)
362 KOG0024 Sorbitol dehydrogenase 55.5 20 0.00043 33.1 4.5 26 93-118 242-267 (354)
363 TIGR01408 Ube1 ubiquitin-activ 55.5 23 0.0005 37.2 5.6 157 4-171 420-608 (1008)
364 COG0702 Predicted nucleoside-d 55.0 19 0.00042 30.1 4.2 30 5-35 2-32 (275)
365 cd08235 iditol_2_DH_like L-idi 55.0 32 0.00069 30.1 5.7 97 4-123 167-264 (343)
366 PRK07326 short chain dehydroge 54.7 24 0.00051 29.1 4.7 30 4-34 7-37 (237)
367 PRK14852 hypothetical protein; 54.5 10 0.00022 39.7 2.7 99 3-106 332-435 (989)
368 PF01262 AlaDh_PNT_C: Alanine 54.4 28 0.0006 28.1 4.9 32 3-35 20-51 (168)
369 PRK09496 trkA potassium transp 54.2 20 0.00044 33.1 4.6 30 4-34 232-261 (453)
370 TIGR01772 MDH_euk_gproteo mala 54.1 19 0.00042 32.5 4.2 32 5-36 1-33 (312)
371 PRK05678 succinyl-CoA syntheta 54.1 46 0.001 29.9 6.6 32 3-34 8-40 (291)
372 PRK05653 fabG 3-ketoacyl-(acyl 54.0 26 0.00057 28.6 4.8 32 3-35 5-37 (246)
373 cd08234 threonine_DH_like L-th 54.0 43 0.00092 29.1 6.4 30 4-34 161-191 (334)
374 cd05284 arabinose_DH_like D-ar 53.8 41 0.0009 29.3 6.3 32 4-35 169-200 (340)
375 cd08289 MDR_yhfp_like Yhfp put 53.4 56 0.0012 28.2 7.0 94 5-124 149-243 (326)
376 PLN00198 anthocyanidin reducta 53.3 24 0.00051 31.2 4.7 32 2-34 8-40 (338)
377 cd08269 Zn_ADH9 Alcohol dehydr 53.1 37 0.00079 29.0 5.7 31 4-35 131-162 (312)
378 PRK08291 ectoine utilization p 53.0 28 0.00061 31.4 5.2 33 4-36 133-165 (330)
379 PLN00203 glutamyl-tRNA reducta 52.8 18 0.0004 35.1 4.1 32 4-35 267-298 (519)
380 PRK05225 ketol-acid reductoiso 52.8 8.5 0.00019 37.0 1.8 27 4-31 37-63 (487)
381 cd08300 alcohol_DH_class_III c 52.6 1.3E+02 0.0028 26.9 9.5 30 4-34 188-218 (368)
382 PRK15076 alpha-galactosidase; 52.5 13 0.00029 35.0 3.1 13 4-16 2-14 (431)
383 smart00575 ZnF_PMZ plant mutat 52.3 3.9 8.4E-05 23.7 -0.4 12 206-217 6-17 (28)
384 cd08260 Zn_ADH6 Alcohol dehydr 51.7 42 0.00092 29.4 6.0 31 4-35 167-197 (345)
385 cd08294 leukotriene_B4_DH_like 51.5 32 0.00069 29.8 5.1 95 4-123 145-240 (329)
386 PF00670 AdoHcyase_NAD: S-aden 51.3 21 0.00046 29.4 3.7 31 4-36 24-54 (162)
387 cd08284 FDH_like_2 Glutathione 50.9 23 0.00051 30.9 4.3 29 4-33 169-198 (344)
388 PRK06141 ornithine cyclodeamin 50.9 31 0.00068 30.9 5.1 33 4-36 126-158 (314)
389 PLN00141 Tic62-NAD(P)-related 50.8 29 0.00062 29.4 4.6 31 4-35 18-49 (251)
390 PRK05586 biotin carboxylase; V 50.8 23 0.00049 33.2 4.3 33 3-36 2-34 (447)
391 PRK06407 ornithine cyclodeamin 50.7 28 0.00061 31.1 4.8 33 4-36 118-150 (301)
392 cd08262 Zn_ADH8 Alcohol dehydr 50.6 37 0.00079 29.7 5.4 31 4-35 163-193 (341)
393 PRK14620 NAD(P)H-dependent gly 50.6 27 0.00058 31.1 4.6 26 5-31 2-27 (326)
394 PLN03154 putative allyl alcoho 50.3 38 0.00083 30.3 5.6 31 4-35 160-191 (348)
395 PF00070 Pyr_redox: Pyridine n 50.2 40 0.00086 23.4 4.6 28 5-33 1-28 (80)
396 cd08295 double_bond_reductase_ 50.1 47 0.001 29.2 6.1 31 4-35 153-184 (338)
397 TIGR02992 ectoine_eutC ectoine 50.0 34 0.00073 30.9 5.2 33 4-36 130-162 (326)
398 PLN02166 dTDP-glucose 4,6-dehy 49.8 28 0.0006 32.8 4.8 31 4-35 121-152 (436)
399 COG2423 Predicted ornithine cy 49.7 53 0.0011 30.1 6.4 33 4-36 131-163 (330)
400 TIGR00507 aroE shikimate 5-deh 49.7 83 0.0018 27.3 7.5 30 4-34 118-147 (270)
401 cd05279 Zn_ADH1 Liver alcohol 49.6 37 0.00079 30.5 5.4 29 4-33 185-214 (365)
402 TIGR03649 ergot_EASG ergot alk 49.1 24 0.00051 30.3 3.9 30 5-35 1-31 (285)
403 cd08231 MDR_TM0436_like Hypoth 49.0 79 0.0017 28.0 7.4 31 4-35 179-210 (361)
404 PRK00421 murC UDP-N-acetylmura 48.9 78 0.0017 29.6 7.6 31 4-36 8-39 (461)
405 PLN02702 L-idonate 5-dehydroge 48.9 53 0.0011 29.3 6.3 101 4-123 183-284 (364)
406 PRK10675 UDP-galactose-4-epime 48.8 29 0.00064 30.4 4.5 30 4-34 1-31 (338)
407 cd08285 NADP_ADH NADP(H)-depen 48.6 37 0.0008 30.0 5.2 29 4-33 168-197 (351)
408 PRK05086 malate dehydrogenase; 48.5 30 0.00065 31.1 4.6 32 4-35 1-34 (312)
409 cd08246 crotonyl_coA_red croto 48.4 2.1E+02 0.0045 25.8 10.2 30 4-34 195-225 (393)
410 PLN02948 phosphoribosylaminoim 48.4 29 0.00064 34.0 4.8 32 2-34 21-52 (577)
411 TIGR00514 accC acetyl-CoA carb 48.3 30 0.00066 32.3 4.8 33 1-35 1-33 (449)
412 COG1893 ApbA Ketopantoate redu 48.3 25 0.00055 31.6 4.1 23 4-26 1-23 (307)
413 cd08236 sugar_DH NAD(P)-depend 47.9 61 0.0013 28.3 6.4 30 5-35 162-192 (343)
414 PLN02657 3,8-divinyl protochlo 47.9 33 0.00072 31.6 4.9 32 3-35 60-92 (390)
415 COG4529 Uncharacterized protei 47.6 27 0.00059 33.6 4.3 34 4-37 2-36 (474)
416 PRK05732 2-octaprenyl-6-methox 47.6 30 0.00064 31.1 4.4 35 1-35 1-37 (395)
417 PRK12825 fabG 3-ketoacyl-(acyl 47.4 40 0.00086 27.5 4.9 33 2-35 5-38 (249)
418 COG0362 Gnd 6-phosphogluconate 47.4 23 0.0005 33.7 3.7 35 1-36 1-35 (473)
419 PF04321 RmlD_sub_bind: RmlD s 46.7 29 0.00063 30.4 4.1 32 4-36 1-33 (286)
420 PRK09126 hypothetical protein; 46.0 31 0.00067 31.0 4.3 33 1-34 1-33 (392)
421 PRK08125 bifunctional UDP-gluc 45.8 33 0.00071 33.9 4.7 32 4-35 316-348 (660)
422 PRK10217 dTDP-glucose 4,6-dehy 45.6 32 0.0007 30.4 4.3 31 4-35 2-33 (355)
423 PF13241 NAD_binding_7: Putati 45.5 43 0.00092 24.8 4.3 33 3-36 7-39 (103)
424 cd08293 PTGR2 Prostaglandin re 45.4 72 0.0016 27.9 6.5 31 4-35 156-188 (345)
425 PLN02206 UDP-glucuronate decar 45.3 31 0.00068 32.5 4.4 31 4-35 120-151 (442)
426 PRK12439 NAD(P)H-dependent gly 44.9 33 0.00072 31.0 4.3 24 3-26 7-30 (341)
427 PRK12826 3-ketoacyl-(acyl-carr 44.8 40 0.00086 27.7 4.5 32 3-35 6-38 (251)
428 PLN02695 GDP-D-mannose-3',5'-e 44.5 39 0.00084 30.7 4.7 31 3-34 21-52 (370)
429 PRK14989 nitrite reductase sub 44.2 35 0.00076 35.1 4.8 36 1-36 1-39 (847)
430 PLN02778 3,5-epimerase/4-reduc 44.0 47 0.001 29.2 5.1 29 3-32 9-38 (298)
431 TIGR01181 dTDP_gluc_dehyt dTDP 43.8 31 0.00068 29.5 3.8 30 5-34 1-32 (317)
432 cd08252 AL_MDR Arginate lyase 43.7 94 0.002 26.9 6.9 97 4-124 151-248 (336)
433 cd08240 6_hydroxyhexanoate_dh_ 42.9 60 0.0013 28.6 5.6 91 4-118 177-268 (350)
434 PRK00258 aroE shikimate 5-dehy 42.8 43 0.00093 29.3 4.6 31 4-34 124-154 (278)
435 cd08263 Zn_ADH10 Alcohol dehyd 42.3 69 0.0015 28.5 6.0 30 5-35 190-220 (367)
436 TIGR02825 B4_12hDH leukotriene 42.3 73 0.0016 27.8 6.0 31 4-35 140-171 (325)
437 PRK00676 hemA glutamyl-tRNA re 42.1 41 0.0009 30.9 4.5 31 4-34 175-205 (338)
438 PLN02858 fructose-bisphosphate 41.9 29 0.00063 37.7 3.9 31 4-36 5-35 (1378)
439 cd01080 NAD_bind_m-THF_DH_Cycl 41.9 60 0.0013 26.6 5.0 31 4-35 45-76 (168)
440 PLN02260 probable rhamnose bio 41.5 41 0.00089 33.1 4.7 33 3-35 6-40 (668)
441 PRK03815 murD UDP-N-acetylmura 41.4 41 0.00088 31.3 4.4 29 4-35 1-29 (401)
442 TIGR03466 HpnA hopanoid-associ 41.3 41 0.00089 29.0 4.2 30 5-35 2-32 (328)
443 TIGR01214 rmlD dTDP-4-dehydror 41.2 39 0.00084 28.8 4.0 30 5-35 1-31 (287)
444 PRK09291 short chain dehydroge 40.8 55 0.0012 27.2 4.8 31 4-35 3-34 (257)
445 PRK07577 short chain dehydroge 40.7 56 0.0012 26.7 4.8 34 1-35 1-35 (234)
446 PRK14194 bifunctional 5,10-met 40.4 57 0.0012 29.6 5.0 31 4-35 160-191 (301)
447 PRK10084 dTDP-glucose 4,6 dehy 40.2 43 0.00094 29.6 4.3 29 5-33 2-31 (352)
448 PRK08163 salicylate hydroxylas 40.0 47 0.001 29.9 4.5 31 2-33 3-33 (396)
449 COG0451 WcaG Nucleoside-diphos 39.9 47 0.001 28.4 4.3 31 5-36 2-33 (314)
450 PLN02572 UDP-sulfoquinovose sy 39.6 46 0.001 31.2 4.5 30 4-34 48-78 (442)
451 cd05280 MDR_yhdh_yhfp Yhdh and 39.5 1.1E+02 0.0024 26.2 6.7 88 5-118 149-237 (325)
452 PTZ00345 glycerol-3-phosphate 39.3 87 0.0019 29.0 6.2 23 3-25 11-33 (365)
453 PRK04148 hypothetical protein; 39.3 42 0.00092 26.8 3.6 29 4-34 18-46 (134)
454 PRK12827 short chain dehydroge 39.3 57 0.0012 26.7 4.6 31 3-34 6-37 (249)
455 PRK02006 murD UDP-N-acetylmura 39.3 47 0.001 31.5 4.6 31 4-36 8-38 (498)
456 TIGR03570 NeuD_NnaD sugar O-ac 39.2 54 0.0012 26.2 4.4 31 5-36 1-31 (201)
457 PLN02896 cinnamyl-alcohol dehy 38.9 54 0.0012 29.2 4.7 31 4-35 11-42 (353)
458 COG0683 LivK ABC-type branched 38.9 1.9E+02 0.0041 26.1 8.3 75 92-175 77-151 (366)
459 PRK05562 precorrin-2 dehydroge 38.8 2.2E+02 0.0047 24.6 8.2 31 4-35 26-56 (223)
460 KOG2250 Glutamate/leucine/phen 38.7 1.4E+02 0.0031 29.0 7.6 33 4-37 252-284 (514)
461 PRK09987 dTDP-4-dehydrorhamnos 38.6 44 0.00095 29.2 4.0 28 5-34 2-30 (299)
462 PRK06180 short chain dehydroge 38.5 62 0.0013 27.6 4.9 32 3-35 4-36 (277)
463 TIGR01161 purK phosphoribosyla 38.5 46 0.00099 29.9 4.2 29 5-34 1-29 (352)
464 cd08292 ETR_like_2 2-enoyl thi 38.5 96 0.0021 26.6 6.1 32 4-36 141-173 (324)
465 PRK05565 fabG 3-ketoacyl-(acyl 38.4 61 0.0013 26.5 4.7 30 3-33 5-35 (247)
466 TIGR01751 crot-CoA-red crotony 38.4 2E+02 0.0044 26.0 8.5 30 4-34 191-221 (398)
467 PRK09422 ethanol-active dehydr 38.2 1E+02 0.0023 26.7 6.4 32 4-35 164-195 (338)
468 TIGR03589 PseB UDP-N-acetylglu 38.2 56 0.0012 29.0 4.6 32 3-34 4-37 (324)
469 PRK08017 oxidoreductase; Provi 38.0 65 0.0014 26.7 4.8 31 4-35 3-34 (256)
470 cd05288 PGDH Prostaglandin deh 37.8 69 0.0015 27.6 5.1 31 4-35 147-178 (329)
471 PRK11150 rfaD ADP-L-glycero-D- 37.8 57 0.0012 28.2 4.6 30 6-36 2-32 (308)
472 COG0240 GpsA Glycerol-3-phosph 37.7 59 0.0013 29.9 4.7 30 4-33 2-32 (329)
473 PRK06182 short chain dehydroge 37.7 65 0.0014 27.3 4.9 33 1-34 1-34 (273)
474 cd08270 MDR4 Medium chain dehy 37.7 2.5E+02 0.0054 23.7 9.7 87 5-124 135-222 (305)
475 PRK10754 quinone oxidoreductas 37.5 72 0.0016 27.6 5.2 31 4-35 142-173 (327)
476 cd08232 idonate-5-DH L-idonate 37.3 2.4E+02 0.0053 24.4 8.6 30 4-34 167-197 (339)
477 PF02423 OCD_Mu_crystall: Orni 37.1 48 0.001 29.8 4.1 34 4-37 129-162 (313)
478 TIGR01142 purT phosphoribosylg 37.1 49 0.0011 29.8 4.2 30 5-35 1-30 (380)
479 cd00300 LDH_like L-lactate deh 37.0 48 0.001 29.5 4.0 32 6-37 1-32 (300)
480 PF00743 FMO-like: Flavin-bind 37.0 49 0.0011 32.1 4.3 29 4-33 2-30 (531)
481 cd08286 FDH_like_ADH2 formalde 36.6 79 0.0017 27.7 5.4 30 4-33 168-197 (345)
482 PRK11259 solA N-methyltryptoph 36.4 57 0.0012 29.0 4.5 33 1-34 1-33 (376)
483 PRK06823 ornithine cyclodeamin 36.4 73 0.0016 28.8 5.1 33 4-36 129-161 (315)
484 PLN02214 cinnamoyl-CoA reducta 36.2 64 0.0014 28.8 4.8 31 4-35 11-42 (342)
485 PF01370 Epimerase: NAD depend 36.2 66 0.0014 26.1 4.5 30 6-36 1-31 (236)
486 cd08259 Zn_ADH5 Alcohol dehydr 35.9 1.5E+02 0.0031 25.4 6.8 31 4-35 164-195 (332)
487 cd01492 Aos1_SUMO Ubiquitin ac 35.9 55 0.0012 27.3 4.0 32 4-36 22-53 (197)
488 PRK06914 short chain dehydroge 35.8 74 0.0016 26.9 4.9 34 1-35 1-35 (280)
489 PRK13512 coenzyme A disulfide 35.8 58 0.0013 30.3 4.5 33 4-36 2-35 (438)
490 PRK04965 NADH:flavorubredoxin 35.7 55 0.0012 29.6 4.3 34 1-35 1-35 (377)
491 PLN02662 cinnamyl-alcohol dehy 35.5 56 0.0012 28.3 4.2 30 4-34 5-35 (322)
492 COG0644 FixC Dehydrogenases (f 35.4 60 0.0013 29.7 4.5 32 1-33 1-32 (396)
493 PRK06199 ornithine cyclodeamin 35.4 65 0.0014 29.9 4.7 33 4-36 156-189 (379)
494 PRK12829 short chain dehydroge 35.3 71 0.0015 26.6 4.7 31 3-34 11-42 (264)
495 PRK06847 hypothetical protein; 35.2 61 0.0013 28.9 4.4 30 3-33 4-33 (375)
496 PF12953 DUF3842: Domain of un 35.2 2.3E+02 0.0051 22.6 9.3 104 6-140 2-117 (131)
497 PRK07023 short chain dehydroge 35.1 67 0.0014 26.6 4.4 30 4-34 2-32 (243)
498 PLN02686 cinnamoyl-CoA reducta 35.0 68 0.0015 29.1 4.8 34 2-36 52-86 (367)
499 PRK01368 murD UDP-N-acetylmura 34.9 55 0.0012 30.9 4.3 29 4-35 7-35 (454)
500 COG0059 IlvC Ketol-acid reduct 34.8 40 0.00086 31.0 3.1 25 4-29 19-43 (338)
No 1
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6e-79 Score=550.59 Aligned_cols=206 Identities=52% Similarity=0.886 Sum_probs=196.3
Q ss_pred CCccEEEEEccChhHHHHHHHHHcC----CCceEEEEeCCCcChhhhhhheeeccccccccCccEEE--------eCCce
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV--------KDDKT 68 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~----~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~--------~~~~~ 68 (218)
||++||||||||||||.++|++++. +++|||||||+..++++++|||||||+||+|+ ++++. +++ .
T Consensus 1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~~~~~~~~~-~ 78 (361)
T PTZ00434 1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK-YTVETTKSSPSVKTDD-V 78 (361)
T ss_pred CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcC-CceeecccccccccCC-E
Confidence 7779999999999999999998864 57999999998889999999999999999999 89987 666 6
Q ss_pred EEECCEEEEEE-eecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCC-CCeEEeecCccccCC-C
Q 027805 69 LLFGEKPVTVF-GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKP-E 145 (218)
Q Consensus 69 l~i~g~~i~v~-~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d-~p~~V~gvN~~~~~~-~ 145 (218)
|+|||++|.++ +++||+++||+++|+|||+||||.|++++.++.|+++||||||||+|++| .|||||||||+.|++ .
T Consensus 79 l~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~ 158 (361)
T PTZ00434 79 LVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTE 158 (361)
T ss_pred EEECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCccc
Confidence 99999999986 99999999999999999999999999999999999999999999999887 689999999999997 5
Q ss_pred CCEEEcCChhhhhHHHHHHHH-HhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccC
Q 027805 146 LNIVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKT 208 (218)
Q Consensus 146 ~~IIs~aSCtT~~Lap~lk~L-~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~ 208 (218)
++||||+|||||||||++|+| ||+|||++++||||||||++|+++|+||+|||||+|+|++||
T Consensus 159 ~~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nI 222 (361)
T PTZ00434 159 HHVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNI 222 (361)
T ss_pred CcEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccC
Confidence 789999999999999999999 799999999999999999999999999879999999999998
No 2
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-70 Score=494.75 Aligned_cols=205 Identities=64% Similarity=1.033 Sum_probs=196.3
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEe
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (218)
|+ +||||||||||||.++|++++++++|+|||||+..++++++|||||||+||+|+ ++++.+++ .|+|||++|++++
T Consensus 1 m~-~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MV-VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLP-AEVSVTDG-FLMIGSKKVHVFF 77 (337)
T ss_pred Cc-eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCC-CcEEecCC-EEEECCeEEEEEe
Confidence 54 899999999999999999998888999999998889999999999999999999 99998888 6999999999999
Q ss_pred ecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEEcCChhhhhH
Q 027805 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCL 159 (218)
Q Consensus 81 ~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d-~p~~V~gvN~~~~~~~~~IIs~aSCtT~~L 159 (218)
++||+++||++.|+|+||||||.|+++++++.|+++|||+|++|+|+++ +|+||||||++.|++.++||||||||||||
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~L 157 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCL 157 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHH
Confidence 9999999999999999999999999999999999999999999999765 799999999999987678999999999999
Q ss_pred HHHHHHHHhhcCeeEEEEEEEeccCCCCccccCCC--CCCccccccccccC
Q 027805 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--SKDWRGLACFEWKT 208 (218)
Q Consensus 160 ap~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~--~~d~r~~r~a~~~~ 208 (218)
+|++|+||++|||+++.||||||+|++|+++|+++ ++||||+|++++|+
T Consensus 158 ap~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~Ni 208 (337)
T PTZ00023 158 APLAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNI 208 (337)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccc
Confidence 99999999999999999999999999999999986 58999999999998
No 3
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=1.8e-70 Score=505.67 Aligned_cols=202 Identities=48% Similarity=0.796 Sum_probs=191.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcC--CCceEEEEeCCCcChhhhhhheeeccccccccCccEEE-eCCceEEECCEEEEEE
Q 027805 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV-KDDKTLLFGEKPVTVF 79 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~--~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~-~~~~~l~i~g~~i~v~ 79 (218)
++||||||||||||.++|+++++ +++|||+|||+ .++++++|||||||+||+|+ ++++. +++ .|.++|++|+++
T Consensus 75 ~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~-~~v~~~~~~-~L~v~Gk~I~V~ 151 (442)
T PLN02237 75 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSMLGTFK-ADVKIVDDE-TISVDGKPIKVV 151 (442)
T ss_pred eEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC-CCHHHHHHHHccccCCCCcC-CceEECCCC-EEEECCEEEEEE
Confidence 48999999999999999998865 67999999996 49999999999999999999 89986 555 699999999999
Q ss_pred eecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCC--CCeEEeecCccccCCC-CCEEEcCChhh
Q 027805 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPE-LNIVSNASCTT 156 (218)
Q Consensus 80 ~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d--~p~~V~gvN~~~~~~~-~~IIs~aSCtT 156 (218)
++++|+++||++.|+||||||||.|+++++++.|+++|||||++|+|++| +||||||||++.|++. ++|||||||||
T Consensus 152 ~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTT 231 (442)
T PLN02237 152 SNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTT 231 (442)
T ss_pred EcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHH
Confidence 99999999999999999999999999999999999999999999999765 6999999999999875 78999999999
Q ss_pred hhHHHHHHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccC
Q 027805 157 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKT 208 (218)
Q Consensus 157 ~~Lap~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~ 208 (218)
|||+|++|+||++|||++++|||||+||++|+++|+|| +||||+|+|++||
T Consensus 232 NcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h-~D~Rr~Raaa~nI 282 (442)
T PLN02237 232 NCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNI 282 (442)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCC-ccccccccccccc
Confidence 99999999999999999999999999999999999996 8999999999998
No 4
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-70 Score=487.42 Aligned_cols=201 Identities=56% Similarity=0.909 Sum_probs=193.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCC-CceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~-~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
+||||||||||||+++|++.+++ ++|+|||||+ .+++++||||+|||+||+|. ++++.+++ .+.|+|+.|+++.++
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~-~~v~~~~~-~~~v~g~~I~v~~~~ 78 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFD-GEVEVKDD-ALVVNGKGIKVLAER 78 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCC-CcccccCC-eEEECCceEEEEecC
Confidence 79999999999999999999998 7999999997 59999999999999999999 89887777 699999999999999
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhC-CCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEEcCChhhhhHH
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKG-GAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLA 160 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~-GakkViis~ps~d-~p~~V~gvN~~~~~~~~~IIs~aSCtT~~La 160 (218)
+|++|||.++|+|+|+||||.|+++|+++.|+++ |||||++|+|+++ +++||+|||++.|++.++||||+|||||||+
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLa 158 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLA 158 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhH
Confidence 9999999999999999999999999999999998 5999999999987 9999999999999988899999999999999
Q ss_pred HHHHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccC
Q 027805 161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKT 208 (218)
Q Consensus 161 p~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~ 208 (218)
|++|+|+++|||++++|||+|++|++|+++|+|| +||||+|||++|+
T Consensus 159 p~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph-~~~rr~raa~~ni 205 (335)
T COG0057 159 PVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH-KDLRRARAAALNI 205 (335)
T ss_pred HHHHHHHHhcCeeEEEEEEEEcccCCCccccCcc-cchhhhccccCCC
Confidence 9999999999999999999999999999999997 6899999999996
No 5
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.1e-69 Score=488.31 Aligned_cols=202 Identities=55% Similarity=0.939 Sum_probs=193.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
++||||||||||||.++|++++++++|||||||+ .++++++|||||||+||+|+ ++++.+++ .|.++|++|.+++++
T Consensus 2 ~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~~ 78 (331)
T PRK15425 2 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAER 78 (331)
T ss_pred ceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcC-CcEEecCC-EEEECCeEEEEEEcC
Confidence 3799999999999999999988889999999996 59999999999999999999 89998888 699999999999999
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEEcCChhhhhHHH
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAP 161 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d-~p~~V~gvN~~~~~~~~~IIs~aSCtT~~Lap 161 (218)
+|+++||+++|+|+||||||.|+++++++.|+++|||||++|+|+++ +|+||||||++.|++ ++||||||||||||+|
T Consensus 79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~Lap 157 (331)
T PRK15425 79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLAP 157 (331)
T ss_pred ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999875 799999999999975 6899999999999999
Q ss_pred HHHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccC
Q 027805 162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKT 208 (218)
Q Consensus 162 ~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~ 208 (218)
++|+||++|||++++||||||+|++|+++|+++++||||+|++++||
T Consensus 158 vlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~Ni 204 (331)
T PRK15425 158 LAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNI 204 (331)
T ss_pred HHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhce
Confidence 99999999999999999999999999999999889999999999998
No 6
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=2.5e-69 Score=486.76 Aligned_cols=201 Identities=44% Similarity=0.768 Sum_probs=191.6
Q ss_pred cEEEEEccChhHHHHHHHHHcC--CCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 4 VKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~--~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
+||||||||||||.++|++++. +++|+|||||+ .++++++|||||||+||+|+ ++++.+++ .|.+||++|.++++
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~ 78 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT-SDPRTNAHLLKYDSMLGKLN-ADISADEN-SITVNGKTIKCVSD 78 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC-CCHHHHHHHHhhccCCCCCC-CcEEEcCC-EEEECCEEEEEEEc
Confidence 6999999999999999998876 57999999997 48999999999999999999 89998877 69999999999999
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCC--CCeEEeecCccccCC-CCCEEEcCChhhhh
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKP-ELNIVSNASCTTNC 158 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d--~p~~V~gvN~~~~~~-~~~IIs~aSCtT~~ 158 (218)
+||+++||+++|+|+||||||.|+++++++.|+++|||||++|+|++| +||||||||++.|++ .++|||||||||||
T Consensus 79 ~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~ 158 (337)
T PRK07403 79 RNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNC 158 (337)
T ss_pred CCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHH
Confidence 999999999999999999999999999999999999999999999765 599999999999985 47899999999999
Q ss_pred HHHHHHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccC
Q 027805 159 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKT 208 (218)
Q Consensus 159 Lap~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~ 208 (218)
|+|++|+||++|||++++|||+||+|++|+++|+++ +||||+|+|++||
T Consensus 159 Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~-~d~r~~raaa~Ni 207 (337)
T PRK07403 159 LAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASH-RDLRRARAAAVNI 207 (337)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEeeecCCcccccccc-ccccccccccccc
Confidence 999999999999999999999999999999999996 8999999999998
No 7
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.4e-68 Score=482.56 Aligned_cols=202 Identities=45% Similarity=0.793 Sum_probs=192.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
++||||||||||||.++|++++++++|+|+|||+. ++++++|||||||+||+|+ ++++.+++ .|.|||++|.+++++
T Consensus 2 ~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~~-~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~v~g~~I~v~~~~ 78 (343)
T PRK07729 2 KTKVAINGFGRIGRMVFRKAIKESAFEIVAINASY-PSETLAHLIKYDTVHGKFD-GTVEAFED-HLLVDGKKIRLLNNR 78 (343)
T ss_pred ceEEEEECcChHHHHHHHHHhhcCCcEEEEecCCC-CHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEEcC
Confidence 47999999999999999999988899999999974 9999999999999999999 89998877 699999999999999
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCC-CCeEEeecCccccCC-CCCEEEcCChhhhhHH
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKP-ELNIVSNASCTTNCLA 160 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d-~p~~V~gvN~~~~~~-~~~IIs~aSCtT~~La 160 (218)
||+++||++.|+||||||||.|+++++++.|+++|||||++|+|++| +++||+|||++.|++ .++||||||||||||+
T Consensus 79 dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~La 158 (343)
T PRK07729 79 DPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLA 158 (343)
T ss_pred ChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHHH
Confidence 99999999999999999999999999999999999999999999776 567899999999987 4789999999999999
Q ss_pred HHHHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccC
Q 027805 161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKT 208 (218)
Q Consensus 161 p~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~ 208 (218)
|++|+||++|||++++|||||++|++|+++|+|+ +||||+|++++||
T Consensus 159 p~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~-~d~rr~R~a~~ni 205 (343)
T PRK07729 159 PVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSI 205 (343)
T ss_pred HHHHHHHHhcCeeEEEEEEEecccCcccccccch-hhhhcccccccce
Confidence 9999999999999999999999999999999996 8999999999998
No 8
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2e-68 Score=481.44 Aligned_cols=205 Identities=28% Similarity=0.523 Sum_probs=193.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECC-EEEEEEee
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVTVFGV 81 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g-~~i~v~~~ 81 (218)
.+||||||||||||.++|++++++++|+|||||+..++++++|||||||+||+|+.++++.+++ .|.+|| ++|.++++
T Consensus 2 ~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~-~l~i~g~~~i~~~~~ 80 (342)
T PTZ00353 2 PITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGE-QIVLNGTQKIRVSAK 80 (342)
T ss_pred CeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCC-EEecCCCeEEEEEec
Confidence 3799999999999999999998889999999998789999999999999999995148888877 699999 89999999
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEEcCChhhhhHHH
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAP 161 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~~~~~~~~IIs~aSCtT~~Lap 161 (218)
++|+++||+++|+|+||||||.|++.+++..|+++|||||||++||+|+||||||||++.|++.++||||||||||||+|
T Consensus 81 ~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap 160 (342)
T PTZ00353 81 HDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAP 160 (342)
T ss_pred CCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998777899999999999999
Q ss_pred HHHHHHhhcCeeEEEEEEEeccCCCCccccCCC--CCCccccccccccCc
Q 027805 162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--SKDWRGLACFEWKTD 209 (218)
Q Consensus 162 ~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~--~~d~r~~r~a~~~~~ 209 (218)
++|+||++|||++++|||||||+ +|...|+|+ ++||||+|+|++||.
T Consensus 161 vlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIi 209 (342)
T PTZ00353 161 VIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIA 209 (342)
T ss_pred HHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCc
Confidence 99999999999999999999997 799999876 489999999999974
No 9
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=3.8e-68 Score=489.19 Aligned_cols=203 Identities=69% Similarity=1.106 Sum_probs=195.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEE-eCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV-KDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~-~~~~~l~i~g~~i~v~~~~ 82 (218)
+||||||||||||.++|++...++++||+||||+.++++++|||||||+||+|+ ++++. +++ .|.+||++|++++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~-~~v~~~~~~-~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFK-GTINVVDDS-TLEINGKQIKVTSKR 163 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCC-CcEEEccCC-EEEECCEEEEEEecC
Confidence 699999999999999999987678999999999889999999999999999999 99987 666 699999999999999
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEEcCChhhhhHHHH
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPL 162 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~~~~~~~~IIs~aSCtT~~Lap~ 162 (218)
+|++++|+++|+||||||||.|+++++++.|+++||||||||+|++|+|+||||||++.|++.++||||||||||||+|+
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap~ 243 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPL 243 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999989999999999999987778999999999999999
Q ss_pred HHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccC
Q 027805 163 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKT 208 (218)
Q Consensus 163 lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~ 208 (218)
+|+||++|||++++|||||++|++|+++|+++++|||++|++++||
T Consensus 244 lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NI 289 (421)
T PLN02272 244 AKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNI 289 (421)
T ss_pred HHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCccccc
Confidence 9999999999999999999999999999999879999999999998
No 10
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=6.6e-68 Score=478.55 Aligned_cols=205 Identities=87% Similarity=1.360 Sum_probs=196.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCc-cEEEeCCceEEECCEEEEEEee
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH-ELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~-~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
++||||||||||||.++|++.+.+++++|+|||+..++++++|||||||+||+|+ + +++.++++.|.++|++|+++++
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~-~~~v~~~~g~~l~~~g~~i~v~~~ 83 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWK-HHELKVKDDKTLLFGEKPVTVFGI 83 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcC-CCeEEECCCCEEEECCEEEEEEEc
Confidence 4899999999999999999988899999999999889999999999999999999 6 8888666579999999999999
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEEcCChhhhhHHH
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAP 161 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~~~~~~~~IIs~aSCtT~~Lap 161 (218)
+||+++||++.|+||||||||.|+++++++.|+++|||||++|+|++|+|+||||||++.|++.++||||||||||||+|
T Consensus 84 ~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTTn~Lap 163 (338)
T PLN02358 84 RNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAP 163 (338)
T ss_pred CCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998777899999999999999
Q ss_pred HHHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccC
Q 027805 162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKT 208 (218)
Q Consensus 162 ~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~ 208 (218)
++|+||++|||++++||||||+|++|+++|+++++||||+|++++|+
T Consensus 164 ~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~Ni 210 (338)
T PLN02358 164 LAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNI 210 (338)
T ss_pred HHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCcccccccc
Confidence 99999999999999999999999999999999889999999999997
No 11
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=5.2e-67 Score=479.19 Aligned_cols=203 Identities=44% Similarity=0.743 Sum_probs=192.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcC--CCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEe
Q 027805 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~--~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (218)
++||||||||||||.++|++.++ +.++|++|||+. ++++++|||+|||+||+|+ ++++..+++.|.+||++|++++
T Consensus 60 ~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~~-~~~~~ayLl~yDS~hG~f~-~~v~~~~g~~l~v~gk~I~v~~ 137 (395)
T PLN03096 60 KIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTG-GVKQASHLLKYDSTLGTFD-ADVKPVGDDAISVDGKVIKVVS 137 (395)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCCC-CHHHHHHHHhhcccCCCcC-CcEEEecCCEEEECCEEEEEEE
Confidence 47999999999999999999876 689999999975 8999999999999999999 8987644437999999999999
Q ss_pred ecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEEcCChhhhhH
Q 027805 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCL 159 (218)
Q Consensus 81 ~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d-~p~~V~gvN~~~~~~~~~IIs~aSCtT~~L 159 (218)
++||+++||++.|+||||||||.|++++.++.|+++|||||++|+|+++ +||||||||++.|++.++||||||||||||
T Consensus 138 ~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~L 217 (395)
T PLN03096 138 DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCL 217 (395)
T ss_pred cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHHH
Confidence 9999999999999999999999999999999999999999999999765 799999999999987778999999999999
Q ss_pred HHHHHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccC
Q 027805 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKT 208 (218)
Q Consensus 160 ap~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~ 208 (218)
+|++|+||++|||++++|||||+||++|+++|+++ +||||+|+|++||
T Consensus 218 Ap~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~~-~d~rr~Raaa~Ni 265 (395)
T PLN03096 218 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNI 265 (395)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEccccccccccCCC-Cccccchhhhccc
Confidence 99999999999999999999999999999999986 8999999999998
No 12
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=2.2e-66 Score=466.80 Aligned_cols=201 Identities=55% Similarity=0.919 Sum_probs=191.3
Q ss_pred EEEEEccChhHHHHHHHHHcC--CCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCE-EEEEEee
Q 027805 5 KIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTVFGV 81 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~--~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~-~i~v~~~ 81 (218)
||||||||||||.++|+++++ +++++|+|||+ .++++++|||||||+||+|+ ++++.++++.|.++|+ .|.++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~~~l~i~g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFE-GEVTADEDKGLVVNGKFVIVVASE 78 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCC-CcEEecCCceEEECCeEEEEEEec
Confidence 799999999999999999877 47999999997 59999999999999999999 8999876623999999 9999999
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEEcCChhhhhHH
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLA 160 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d-~p~~V~gvN~~~~~~~~~IIs~aSCtT~~La 160 (218)
++|++++|+++|+|+||||||.|+++++++.|+++|||||++|+|++| +||||||||++.|+..++||||||||||||+
T Consensus 79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~La 158 (327)
T TIGR01534 79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLA 158 (327)
T ss_pred CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHH
Confidence 999999999999999999999999999999999999999999999877 7999999999999877789999999999999
Q ss_pred HHHHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccC
Q 027805 161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKT 208 (218)
Q Consensus 161 p~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~ 208 (218)
|++|+||++|||++++||||||+|++|+++|+++ +|||++|++++|+
T Consensus 159 p~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~~a~Ni 205 (327)
T TIGR01534 159 PLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARAAALNI 205 (327)
T ss_pred HHHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceEeEeee
Confidence 9999999999999999999999999999999986 8999999999997
No 13
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-65 Score=475.57 Aligned_cols=203 Identities=33% Similarity=0.546 Sum_probs=191.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcC----CCceEEEEe----CCCcChhhhhhheeeccccccccCccEEEe--CCceEEEC
Q 027805 3 KVKIGINGFGRIGRLVARVILQR----DDVELVAVN----DPFITTDYMTYMFKYDSVHGQWKHHELKVK--DDKTLLFG 72 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~----~~~~vvaIn----d~~~~~~~~ayl~kydS~~G~~~~~~v~~~--~~~~l~i~ 72 (218)
..||||||||||||+++|+++++ ++++||||| |. .++++++|||||||+||+|+ ++++.+ ++ .|++|
T Consensus 127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~-~d~~~~ayLLkyDSvhG~f~-~~v~~~~~~~-~liin 203 (477)
T PRK08289 127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSE-GDLEKRASLLRRDSVHGPFN-GTITVDEENN-AIIAN 203 (477)
T ss_pred CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCC-CCHHHHHHHhhhhcCCCCCC-CceEeecCCC-EEEEC
Confidence 36999999999999999999876 579999996 44 48999999999999999999 899886 45 69999
Q ss_pred CEEEEEEeecCCCCCCccCCCcc--EEEeeCCcccCHHhHHHHHh-CCCCEEEEeCCCCC-CCeEEeecCccccCCCCCE
Q 027805 73 EKPVTVFGVRNPEEIPWAETGAE--YVVESTGVFTDKDKAAAHLK-GGAKKVIISAPSKD-APMFVVGVNENEYKPELNI 148 (218)
Q Consensus 73 g~~i~v~~~~~p~~i~W~~~gvD--iVve~tg~f~~~~~a~~h~~-~GakkViis~ps~d-~p~~V~gvN~~~~~~~~~I 148 (218)
|+.|+++++++|+++||.++|+| +||||||.|++.+.+..|++ +||||||||+|++| +|+||||||++.|++.++|
T Consensus 204 g~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~I 283 (477)
T PRK08289 204 GNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKI 283 (477)
T ss_pred CEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCE
Confidence 99999999999999999999999 99999999999999999999 89999999999886 7999999999999877789
Q ss_pred EEcCChhhhhHHHHHHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccCc
Q 027805 149 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKTD 209 (218)
Q Consensus 149 Is~aSCtT~~Lap~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~~ 209 (218)
|||||||||||+|++|+||++|||++++|||+||||++|+++|+++ +||||+|+|++|+=
T Consensus 284 ISnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~h-kd~RrgRaaa~NII 343 (477)
T PRK08289 284 VSAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYH-KGDRRGRSAPLNMV 343 (477)
T ss_pred EECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhh-hcCcccceeeeeeE
Confidence 9999999999999999999999999999999999999999999996 79999999999983
No 14
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=5.1e-65 Score=459.11 Aligned_cols=202 Identities=40% Similarity=0.705 Sum_probs=192.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
++||||||||||||.++|++.++++++++++||+..++++++|||||||+||+|+ ++++.+++ .|.+||++|++++++
T Consensus 2 ~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~-~~v~~~g~-~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 2 TIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWH-HEVTAEGD-AIVINGKRIRTTQNK 79 (334)
T ss_pred CeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCC-CCEEEcCC-EEEECCEEEEEEecC
Confidence 4899999999999999999998889999999998889999999999999999999 89998777 699999999999999
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCC--CCeEEeecCccccCC-CCCEEEcCChhhhhH
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKP-ELNIVSNASCTTNCL 159 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d--~p~~V~gvN~~~~~~-~~~IIs~aSCtT~~L 159 (218)
+|++++|. |+|+||||||.|+++++++.|+++|||||++|+|++| +||||||||++.|++ .++||||||||||||
T Consensus 80 ~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~L 157 (334)
T PRK08955 80 AIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCL 157 (334)
T ss_pred ChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHH
Confidence 99999997 9999999999999999999999999999999999764 699999999999987 378999999999999
Q ss_pred HHHHHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccCc
Q 027805 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKTD 209 (218)
Q Consensus 160 ap~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~~ 209 (218)
+|++|+||++|||++++|||||++|++|+++|+++ +||||+|++++|+-
T Consensus 158 ap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~-~d~r~~r~~a~NiI 206 (334)
T PRK08955 158 APVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH-KDLRRARACGMSLI 206 (334)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC-cccccchhheeccc
Confidence 99999999999999999999999999999999986 79999999999973
No 15
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=4.2e-65 Score=459.83 Aligned_cols=201 Identities=36% Similarity=0.693 Sum_probs=191.1
Q ss_pred cEEEEEccChhHHHHHHHHHcC---CCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~---~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (218)
+||||||||||||.++|+++++ ++++++||||+. ++++++|||||||+||+|+ ++++.+++ .|.+||++|.+++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~-~~~~~ayll~ydS~hg~~~-~~v~~~~~-~l~v~g~~i~v~~ 78 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINELA-DAEGMAHLLKYDTSHGRFA-WDVRQERD-QLFVGDDAIRLLH 78 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCC-CHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEE
Confidence 6999999999999999999874 479999999964 9999999999999999999 99998877 6999999999999
Q ss_pred ecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-C-CCeEEeecCccccCCCCCEEEcCChhhhh
Q 027805 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNENEYKPELNIVSNASCTTNC 158 (218)
Q Consensus 81 ~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-d-~p~~V~gvN~~~~~~~~~IIs~aSCtT~~ 158 (218)
+++|+++||++.|+|+||||||.|.+++.++.|+++|||+|++|+|++ | .++||||||++.|++.++|||||||||||
T Consensus 79 ~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~ 158 (336)
T PRK13535 79 ERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNC 158 (336)
T ss_pred cCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHH
Confidence 999999999999999999999999999999999999999999999975 5 45999999999998777899999999999
Q ss_pred HHHHHHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccC
Q 027805 159 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKT 208 (218)
Q Consensus 159 Lap~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~ 208 (218)
|+|++|+||++|||++++||||||+|++|+++|+++ +||||+|++++|+
T Consensus 159 Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~-~d~rr~r~~a~Ni 207 (336)
T PRK13535 159 IIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYH-PDLRRTRAASQSI 207 (336)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchh-hccccccEeeecc
Confidence 999999999999999999999999999999999995 8999999999997
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=4.4e-62 Score=439.04 Aligned_cols=200 Identities=37% Similarity=0.678 Sum_probs=189.4
Q ss_pred EEEEEccChhHHHHHHHHHcCC---CceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 5 KIGINGFGRIGRLVARVILQRD---DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~---~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
||||||||||||.++|++.+++ +++|++|||.. +.++++|||||||+||+|+ ++++.+++ .|.+||+.|+++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~-~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~i~v~~~ 77 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELA-DQASMAHLLRYDTSHGRFP-GEVKVDGD-CLHVNGDCIRVLHS 77 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCC-CHHHHHHHHhhCccCCCCC-CcEEEeCC-EEEECCeEEEEEEc
Confidence 6999999999999999998753 69999999964 8999999999999999999 99998877 69999999999999
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-C-CCeEEeecCccccCCCCCEEEcCChhhhhH
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNENEYKPELNIVSNASCTTNCL 159 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-d-~p~~V~gvN~~~~~~~~~IIs~aSCtT~~L 159 (218)
++|+++||++.++|+||||||.|.+.+.++.|+++|||+|++|+|++ | .++||||||++.|++.++||||||||||||
T Consensus 78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~l 157 (325)
T TIGR01532 78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCI 157 (325)
T ss_pred CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999965 4 458999999999987778999999999999
Q ss_pred HHHHHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccC
Q 027805 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKT 208 (218)
Q Consensus 160 ap~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~ 208 (218)
+|++|+||++|||+++.|||||++|++|+++|+++ +||||+|+|++|+
T Consensus 158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~-~d~r~~r~a~~Ni 205 (325)
T TIGR01532 158 VPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYH-HDLRRTRAASQSI 205 (325)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCccccccch-hhccccchHhhCe
Confidence 99999999999999999999999999999999996 8999999999987
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.3e-58 Score=396.68 Aligned_cols=190 Identities=61% Similarity=0.992 Sum_probs=181.3
Q ss_pred hHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecCCCCCCccCCC
Q 027805 14 IGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 93 (218)
Q Consensus 14 IGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p~~i~W~~~g 93 (218)
|||+++ + +++++++++|||+++.++++|||||||+||+|+ ++++.++. .++++|++|.++++++|.+|+|.+.+
T Consensus 1 ig~~~~---~-~~~v~vv~indpfi~~~~~~y~~kydsthG~f~-g~~k~~~~-~~i~~G~~i~~~~~~~p~~i~w~~~g 74 (285)
T KOG0657|consen 1 IGRLVL---Q-RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFH-GTVKAENF-KLIINGNPITIFQFRDPAKIPWGAKG 74 (285)
T ss_pred CCcccc---c-cCCcccccccCcccccccccccccccccCCccc-cceeecCC-ceeecCceEEeecccCcccCcccccc
Confidence 466666 2 555999999999999999999999999999999 99999888 58899999999999999999999999
Q ss_pred ccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEEcCChhhhhHHHHHHHHHhhcCee
Q 027805 94 AEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV 173 (218)
Q Consensus 94 vDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~~~~~~~~IIs~aSCtT~~Lap~lk~L~~~fgI~ 173 (218)
+|+|+|+||.|++.+.+..|+++||||||||+||+|.||||+|||+++|++...||||+|||||||||++|+||++|||+
T Consensus 75 ~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~ 154 (285)
T KOG0657|consen 75 ADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIM 154 (285)
T ss_pred ceeEeeccccccccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheeccccccc
Confidence 99999999999999999999999999999999999999999999999999877799999999999999999999999999
Q ss_pred EEEEEEEeccCCCCccccCCCCCCccccccccccCc
Q 027805 174 EGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKTD 209 (218)
Q Consensus 174 ~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~~ 209 (218)
+++|||+|++|++|+++|+|++|+||++|+|.|||=
T Consensus 155 EgLMtTvha~tatQktvdgps~k~wr~g~~a~qNIi 190 (285)
T KOG0657|consen 155 EGLMTTVHAITATQKTVDGPSGKLWRDGRRALQNII 190 (285)
T ss_pred cccccceeeeccccccccCcccccccccchhhhccc
Confidence 999999999999999999999999999999999984
No 18
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=1.3e-52 Score=340.76 Aligned_cols=149 Identities=56% Similarity=0.997 Sum_probs=140.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
+||||||||||||+++|+++.++++|||+|||+..++++++|||||||+||+|+ ++++.+++ .|.++|++|+++++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~-~~v~~~~~-~l~v~G~~I~~~~~~d 78 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFP-GDVEVDDD-GLIVNGKKIKVTEERD 78 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGS-SHEEEETT-EEEETTEEEEEEHTSS
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhcccccccee-cccccccc-eeEeecccccchhhhh
Confidence 599999999999999999999999999999999889999999999999999999 89999888 7999999999999999
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCC--CCeEEeecCccccCCCCCEEEcCCh
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPELNIVSNASC 154 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d--~p~~V~gvN~~~~~~~~~IIs~aSC 154 (218)
|+++||++.|+|+|+||||.|++++.++.|+++||||||+|+|++| +||||||||++.|+++++|||++||
T Consensus 79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred hcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 9999999999999999999999999999999999999999999987 8999999999999987799999999
No 19
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=1.3e-47 Score=310.90 Aligned_cols=148 Identities=55% Similarity=0.946 Sum_probs=141.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
+||||+|||||||.++|.+.+.+++++++++|+ .++++++|||+|||+||+|+ .+++.+++ .|.+||+.|+++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~-~~v~~~~~-~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFP-GEVEVDED-GLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCC-CcEEEeCC-EEEECCEEEEEEecCC
Confidence 489999999999999999998899999999997 59999999999999999999 88988888 6999999999999999
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEEcCCh
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASC 154 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d-~p~~V~gvN~~~~~~~~~IIs~aSC 154 (218)
|+++||++.|+|||+||||.|.+.+.++.|+++||||||+|+|++| ++|||+|||++.|+++++||||+||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 9999999999999999999999999999999999999999999987 4699999999999987779999999
No 20
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=2.6e-44 Score=324.22 Aligned_cols=175 Identities=20% Similarity=0.229 Sum_probs=152.4
Q ss_pred EEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChh---hhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTD---YMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 6 vgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~---~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
|||||||||||.++|++.+.++++||+|||. +++ +++++++|||+|+.+. ..++++++ .+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~--~~~~~a~lA~~lgyds~~~~~~-~~~~~~~~-~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT--SPDFEAYRAKELGIPVYAASEE-FIPRFEEA-GIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecC--ChHHHHHHHHHhCCCEEeecCC-cceEeccC-ceEecCC--------
Confidence 6999999999999999988899999999995 666 7888888999884333 35666666 5777764
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCC--CCeEEeecCccccCCCCCEEEcCChhhhhHH
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPELNIVSNASCTTNCLA 160 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d--~p~~V~gvN~~~~~~~~~IIs~aSCtT~~La 160 (218)
++++. .++|+|+||||.|.+.++++.|++.|+|+|++++|++| +++||+|+||+.|.+.+ +|||+|||||||+
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~-~vs~aSCtTn~La 143 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKD-YVRVVSCNTTGLV 143 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc-eEEecCchHhhHH
Confidence 33443 27999999999999999999999999999999999987 47999999999997644 9999999999999
Q ss_pred HHHHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccC
Q 027805 161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKT 208 (218)
Q Consensus 161 p~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~ 208 (218)
|++++|+++|||++++|||+|+ |+||+ ||||+| ++||
T Consensus 144 p~~~~L~~~fGI~~~~~Ttvh~-t~dq~--------d~rrgr--~~~I 180 (333)
T TIGR01546 144 RTLNAINDYSKVDKVRAVMVRR-AADPN--------DVKKGP--INAI 180 (333)
T ss_pred HHHHHHHHhcCeEEEEEEEEee-cCChh--------hhccCc--hhce
Confidence 9999999999999999999997 99994 999999 4776
No 21
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-36 Score=272.72 Aligned_cols=177 Identities=24% Similarity=0.271 Sum_probs=142.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhee---eccccccccCccEE-EeCCceEEECCEEEEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK---YDSVHGQWKHHELK-VKDDKTLLFGEKPVTVF 79 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~k---ydS~~G~~~~~~v~-~~~~~~l~i~g~~i~v~ 79 (218)
+||||||+|||||.+++++.+.++++|++++|. ++++.+||++ || .||+++ .... +++. .+.+.+.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~--~~~~~~~la~~~G~~-~~~~~~-~~~~~~~~~-~i~V~~~----- 71 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT--KPDYEARVAVEKGYP-LYVADP-EREKAFEEA-GIPVAGT----- 71 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC--ChHHHHHHHHhcCCC-ccccCc-cccccccCC-ceEEcCC-----
Confidence 799999999999999999998999999999996 5788889888 44 466665 3332 2222 2434332
Q ss_pred eecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-CCC--eEEeecCccccCCCCCEEEcCChhh
Q 027805 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAP--MFVVGVNENEYKPELNIVSNASCTT 156 (218)
Q Consensus 80 ~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-d~p--~~V~gvN~~~~~~~~~IIs~aSCtT 156 (218)
++++. .++|+|+||||.+.+.+.++.|+++| ++||+++|.+ ++| +||+|||++.+... ++|+|+||||
T Consensus 72 ----~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~~-~~v~~~sCtT 142 (341)
T PRK04207 72 ----IEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALGK-DYVRVVSCNT 142 (341)
T ss_pred ----hhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCCC-CcEEccChHH
Confidence 33332 27999999999999999999999999 7899999864 333 58999999998653 4899999999
Q ss_pred hhHHHHHHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccCcc
Q 027805 157 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKTDW 210 (218)
Q Consensus 157 ~~Lap~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~~~ 210 (218)
|||+|++|+||++|||++++|||+|++|. + +++| |+++.|+--
T Consensus 143 ~~l~~~l~~L~~~fgI~~~~vTtv~a~td-------~--~~~~--r~~~~niip 185 (341)
T PRK04207 143 TGLCRTLCALDRAFGVKKVRATLVRRAAD-------P--KEVK--RGPINAIVP 185 (341)
T ss_pred HHHHHHHHHHHHhcCceEEEEEEEEcCCC-------c--chhh--HHHhcCcCC
Confidence 99999999999999999999999999983 3 4664 778888753
No 22
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.95 E-value=3.5e-27 Score=213.13 Aligned_cols=173 Identities=21% Similarity=0.291 Sum_probs=143.0
Q ss_pred cEEEEEc-cChhHHHHHHHHHc--CCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEe
Q 027805 4 VKIGING-FGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~--~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (218)
+||+|+| .|.+|+.++|.+.+ .|.++++++.... + - ++.+.++|..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~-------------~-~------------g~~l~~~g~~i~v~- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASAR-------------S-A------------GKELSFKGKELKVE- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccc-------------c-C------------CCeeeeCCceeEEe-
Confidence 5999999 99999999999987 5778888775431 1 0 11244555455542
Q ss_pred ecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-----CCCeEEeecCccccCCC--CCEEEcCC
Q 027805 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKPE--LNIVSNAS 153 (218)
Q Consensus 81 ~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-----d~p~~V~gvN~~~~~~~--~~IIs~aS 153 (218)
++...+|. ++|+||+|+|.+.+++.++.|+++|+ +||+.+++ ++|++++|+|++.++.. +++||||+
T Consensus 55 --d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~ 128 (334)
T PRK14874 55 --DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPN 128 (334)
T ss_pred --eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECcc
Confidence 34445674 89999999999999999999999998 79988763 47999999999998764 47999999
Q ss_pred hhhhhHHHHHHHHHhhcCeeEEEEEEEeccCC------------CCccccCCC--CCCccccccccccCc
Q 027805 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA------------TQKTVDGPS--SKDWRGLACFEWKTD 209 (218)
Q Consensus 154 CtT~~Lap~lk~L~~~fgI~~~~~Ttvha~t~------------~Q~~~D~~~--~~d~r~~r~a~~~~~ 209 (218)
|+|+|++|.+++|+++|+|+++.|||+|++|+ +|+++|+++ .+++|+.|+++.|+=
T Consensus 129 C~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~nii 198 (334)
T PRK14874 129 CSTIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVI 198 (334)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCccc
Confidence 99999999999999999999999999999995 899999764 478999999999973
No 23
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.93 E-value=2.8e-25 Score=199.06 Aligned_cols=155 Identities=20% Similarity=0.280 Sum_probs=127.4
Q ss_pred CCccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEE
Q 027805 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (218)
Q Consensus 1 m~~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (218)
|.+++||| | +|.+|+.+++.+.++. + +.+.+ +|| +|- .++ .++.+.++|+.+.|
T Consensus 1 ~~~~~iAi-GATg~VG~~~l~~Leer~-f----------pv~~l-~l~--~s~--------~~s-~gk~i~f~g~~~~V- 55 (322)
T PRK06901 1 MATLNIAI-AAEFELSEKLLEALEQSD-L----------EIEQI-SIV--EIE--------PFG-EEQGIRFNNKAVEQ- 55 (322)
T ss_pred CCcceEEE-ecCcHHHHHHHHHHHhcC-C----------chhhe-eec--ccc--------ccc-CCCEEEECCEEEEE-
Confidence 66789999 9 8999999999888774 4 33333 444 221 011 23469999999998
Q ss_pred eecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-----CCCeEEeecCccccCC--CCCEEEcC
Q 027805 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKP--ELNIVSNA 152 (218)
Q Consensus 80 ~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-----d~p~~V~gvN~~~~~~--~~~IIs~a 152 (218)
++ .++..|. ++|+||+ +|...++++++...++|+ +|||++|. |+|++||+||++.+.. ..+||+||
T Consensus 56 ~~--l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanP 128 (322)
T PRK06901 56 IA--PEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLP 128 (322)
T ss_pred EE--CCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECC
Confidence 33 5555664 8999999 998899999999999999 99999983 6999999999997765 35799999
Q ss_pred ChhhhhHHHHHHHHHhhcCeeEEEEEEEeccCCCC
Q 027805 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ 187 (218)
Q Consensus 153 SCtT~~Lap~lk~L~~~fgI~~~~~Ttvha~t~~Q 187 (218)
+|+|..|++.|++||+.|||+++.+|||||+|+.=
T Consensus 129 NCsTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG 163 (322)
T PRK06901 129 DPQVSQLALALAPFLQEQPLSQIFVTSLLPASYTD 163 (322)
T ss_pred cHHHHHHHHHHHHHHHhcCCcEEEEEeecchhhcC
Confidence 99999999999999999999999999999999873
No 24
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=99.92 E-value=1e-24 Score=197.70 Aligned_cols=171 Identities=22% Similarity=0.324 Sum_probs=133.9
Q ss_pred EEEEEc-cChhHHHHHHHHHc--CCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 5 KIGING-FGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 5 kvgInG-~GrIGr~~~r~~~~--~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
||+|+| .|.+|+.+++.+.+ .|.++++.+... .+ . ++.+.+.|+.+.+. .
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~-------------~~-~------------g~~~~~~~~~~~~~-~ 53 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD-------------RS-A------------GRKVTFKGKELEVN-E 53 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc-------------cc-C------------CCeeeeCCeeEEEE-e
Confidence 689999 99999999998877 465665544321 01 1 11244445444442 2
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCC-----CCCCeEEeecCccccCC--CCCEEEcCCh
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--ELNIVSNASC 154 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps-----~d~p~~V~gvN~~~~~~--~~~IIs~aSC 154 (218)
.++. .| .++|+||+|+|.+.+.+.++.|+++|+ +|||.++ +|+|+++||||++.++. ..++||||+|
T Consensus 54 ~~~~--~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C 127 (339)
T TIGR01296 54 AKIE--SF--EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNC 127 (339)
T ss_pred CChH--Hh--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCc
Confidence 2222 24 389999999999999999999999998 6898886 24799999999998875 2459999999
Q ss_pred hhhhHHHHHHHHHhhcCeeEEEEEEEeccCCC------------CccccCCCCCC-------ccccccccccC
Q 027805 155 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT------------QKTVDGPSSKD-------WRGLACFEWKT 208 (218)
Q Consensus 155 tT~~Lap~lk~L~~~fgI~~~~~Ttvha~t~~------------Q~~~D~~~~~d-------~r~~r~a~~~~ 208 (218)
+|+|+++.+++|+++|+|+++.|||+|++|++ |++++++.... .+++|+++.|+
T Consensus 128 ~~t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ni 200 (339)
T TIGR01296 128 STIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNA 200 (339)
T ss_pred HHHHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccc
Confidence 99999999999999999999999999999997 77788765222 78999999887
No 25
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.89 E-value=1.4e-22 Score=182.18 Aligned_cols=156 Identities=22% Similarity=0.379 Sum_probs=122.3
Q ss_pred cEEEEEc-cChhHHHHHHHHHcC-CCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 4 VKIGING-FGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~-~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
+||||+| +|.+|+.+++.+.++ +.++.+.+ |.-.+..|+- .+.+.|+.+.+. +
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~-------------~AS~rSaG~~-----------~~~f~~~~~~v~-~ 56 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVL-------------LASARSAGKK-----------YIEFGGKSIGVP-E 56 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEE-------------EecccccCCc-----------cccccCccccCc-c
Confidence 6999999 999999999999874 43432222 2111112211 155666665552 2
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-----CCCeEEeecCccccCC--CCC-EEEcCC
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKP--ELN-IVSNAS 153 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-----d~p~~V~gvN~~~~~~--~~~-IIs~aS 153 (218)
.-.+...|. ++||||+|.|...+++.++...++|+ ++||++|. |+|++|++||.+.+.. ... ||+||+
T Consensus 57 ~~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~IianpN 132 (334)
T COG0136 57 DAADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPN 132 (334)
T ss_pred ccccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECCC
Confidence 114455665 89999999999999999999999998 99999983 7999999999987643 234 999999
Q ss_pred hhhhhHHHHHHHHHhhcCeeEEEEEEEeccCCCCc
Q 027805 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK 188 (218)
Q Consensus 154 CtT~~Lap~lk~L~~~fgI~~~~~Ttvha~t~~Q~ 188 (218)
|||..|++.||+|+++|||+++.+|||||+|++=.
T Consensus 133 Cst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~ 167 (334)
T COG0136 133 CSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGA 167 (334)
T ss_pred hHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCc
Confidence 99999999999999999999999999999999865
No 26
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=99.88 E-value=1.1e-22 Score=185.56 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=122.7
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
+||||+| +|.+|+.+++.+.+.++|.+. .+ ++| .|. ++ .++.+.++|+.+.+ ++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~----------~~-~~~--ss~---------~s-~g~~~~f~~~~~~v-~~- 55 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAI----------RP-VFF--STS---------QL-GQAAPSFGGTTGTL-QD- 55 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccc----------cE-EEE--Ech---------hh-CCCcCCCCCCcceE-Ec-
Confidence 3899999 899999999999866666321 11 222 221 11 22246777777766 22
Q ss_pred CCCCC-CccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-----CCCeEEeecCccccCCC--CCE--EEcC
Q 027805 83 NPEEI-PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKPE--LNI--VSNA 152 (218)
Q Consensus 83 ~p~~i-~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-----d~p~~V~gvN~~~~~~~--~~I--Is~a 152 (218)
.++. .|. ++|+||+|.|...+++.++...++|...++||++|. |+|++|++||++.+... ..| |+||
T Consensus 56 -~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ianP 132 (366)
T TIGR01745 56 -AFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVGG 132 (366)
T ss_pred -Cccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEECc
Confidence 3333 343 899999999999999999999999954489999983 69999999999977642 457 8999
Q ss_pred ChhhhhHHHHHHHHHhhcCeeEEEEEEEeccCCCC
Q 027805 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ 187 (218)
Q Consensus 153 SCtT~~Lap~lk~L~~~fgI~~~~~Ttvha~t~~Q 187 (218)
+|||+.|++.|++||+.|||+++.+|||||+|++=
T Consensus 133 NCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG 167 (366)
T TIGR01745 133 NCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGG 167 (366)
T ss_pred CHHHHHHHHHHHHHHhccCccEEEEEechhhhhcC
Confidence 99999999999999999999999999999999985
No 27
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.84 E-value=3.8e-20 Score=168.28 Aligned_cols=155 Identities=17% Similarity=0.350 Sum_probs=123.8
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
.+||||+| +|.+|+.++|.+.+.|++++.- + +++ .|. + ..|+.+.+.|+.+.+ ++
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~----------l-~~~--aS~---------~-saGk~~~~~~~~l~v-~~ 60 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAE----------V-TLL--SSK---------R-SAGKTVQFKGREIII-QE 60 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCccc----------E-EEE--ECc---------c-cCCCCeeeCCcceEE-Ee
Confidence 47999999 8999999999998888886221 1 111 221 0 123346677776666 33
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-----CCCeEEeecCccccCCCCCEEEcCChhh
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKPELNIVSNASCTT 156 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-----d~p~~V~gvN~~~~~~~~~IIs~aSCtT 156 (218)
-++++ |. ++|+||.|+|...+.+.++...++|+ +|||.+++ |+|+++++||.+.+....+||+||+|+|
T Consensus 61 ~~~~~--~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~t 134 (347)
T PRK06728 61 AKINS--FE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSA 134 (347)
T ss_pred CCHHH--hc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCHH
Confidence 35544 42 79999999999999999998888988 89999973 6899999999998875446999999999
Q ss_pred hhHHHHHHHHHhhcCeeEEEEEEEeccCCCC
Q 027805 157 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQ 187 (218)
Q Consensus 157 ~~Lap~lk~L~~~fgI~~~~~Ttvha~t~~Q 187 (218)
+++...|++|+++|+|+++.++|+|++|+.=
T Consensus 135 t~~~laL~PL~~~~~i~~v~V~t~qavSGAG 165 (347)
T PRK06728 135 LQMVTALQPIRKVFGLERIIVSTYQAVSGSG 165 (347)
T ss_pred HHHHHHHHHHHHcCCccEEEEEEeecccccc
Confidence 9999999999999999999999999999873
No 28
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.83 E-value=1.5e-19 Score=163.85 Aligned_cols=153 Identities=25% Similarity=0.312 Sum_probs=125.7
Q ss_pred CccEEEEEc-cChhHHHHHHHHHc--CCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEE
Q 027805 2 GKVKIGING-FGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (218)
Q Consensus 2 ~~~kvgInG-~GrIGr~~~r~~~~--~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v 78 (218)
+++||||+| +|.+|+.++|.+.+ .|.++|+.+... .| - |+.+.++|+.+.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~-------------~s-a------------G~~~~~~~~~~~v 56 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE-------------ES-A------------GETLRFGGKSVTV 56 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc-------------Cc-C------------CceEEECCcceEE
Confidence 468999999 89999999999988 688888777542 11 1 2235566665555
Q ss_pred EeecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-----CCCeEEeecCccccCC--CCCEEEc
Q 027805 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKP--ELNIVSN 151 (218)
Q Consensus 79 ~~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-----d~p~~V~gvN~~~~~~--~~~IIs~ 151 (218)
. +++++.|. ++|+||.|+|...+.+.++...++|+ +||+.+++ |+|+++|++|.+.++. ..++|+|
T Consensus 57 ~---~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAn 129 (336)
T PRK08040 57 Q---DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAV 129 (336)
T ss_pred E---eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEEC
Confidence 2 46667775 79999999999999999998888888 78999873 5899999999944432 3579999
Q ss_pred CChhhhhHHHHHHHHHhhcCeeEEEEEEEeccCCCC
Q 027805 152 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ 187 (218)
Q Consensus 152 aSCtT~~Lap~lk~L~~~fgI~~~~~Ttvha~t~~Q 187 (218)
|+|+|++++..|+||+++++|+++.++|++++|+.=
T Consensus 130 PgC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG 165 (336)
T PRK08040 130 ADSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHG 165 (336)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccC
Confidence 999999999999999999999999999999999984
No 29
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.83 E-value=9.3e-20 Score=165.66 Aligned_cols=180 Identities=22% Similarity=0.267 Sum_probs=125.5
Q ss_pred CCccEEEEEc-cChhHHHHHHHHHcCCCceEEEE-eCCCcChh-hhhhheeeccccccccCccEEEeCCceEEECCEEEE
Q 027805 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAV-NDPFITTD-YMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (218)
Q Consensus 1 m~~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaI-nd~~~~~~-~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~ 77 (218)
||++||+|+| +|.+|+.+++.+.+.|+++++++ .+.. ... .+..++.+. .+|.+. +. . +.+.
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~-~~G~~~~~~~~~~-~~~~~~-~~----------~--~~~~ 65 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASER-SAGKTYGEAVRWQ-LDGPIP-EE----------V--ADME 65 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChh-hcCCccccccccc-cccccc-cc----------c--cceE
Confidence 7789999999 99999999999999999999999 4331 111 110010000 000011 00 0 1223
Q ss_pred EEeecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCC-----CCCCeEEeecCccccCC--------
Q 027805 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP-------- 144 (218)
Q Consensus 78 v~~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps-----~d~p~~V~gvN~~~~~~-------- 144 (218)
+ +..+++.+ . ++|+||+|++...+.+.++...++|++ +|+.++ ++.|.+++++|++.|..
T Consensus 66 v-~~~~~~~~--~--~~DvVf~a~p~~~s~~~~~~~~~~G~~--vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~ 138 (349)
T PRK08664 66 V-VSTDPEAV--D--DVDIVFSALPSDVAGEVEEEFAKAGKP--VFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRR 138 (349)
T ss_pred E-EeCCHHHh--c--CCCEEEEeCChhHHHHHHHHHHHCCCE--EEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhc
Confidence 3 22345443 2 789999999998888888777778873 455554 24789999999986632
Q ss_pred --CCCEEEcCChhhhhHHHHHHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccCccc
Q 027805 145 --ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKTDWY 211 (218)
Q Consensus 145 --~~~IIs~aSCtT~~Lap~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~~~~ 211 (218)
..++||||||+|+|+++.+++|++ |||+++.+||+|++|++++.. +..+.++.|+-=|
T Consensus 139 ~~~~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~--------~~~~~~~~N~~p~ 198 (349)
T PRK08664 139 GWDGFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYPG--------VPSMDIVDNVIPY 198 (349)
T ss_pred cCCceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCccc--------chhhhhhcCcccc
Confidence 135999999999999999999999 999999999999999997542 2244566676444
No 30
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.83 E-value=5.6e-20 Score=168.23 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=121.4
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCce---EEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEE
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVE---LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~---vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (218)
+||||+| +|.+|+.++|.+++.++++ ++.. .|.+ ..++.+.++|+...++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~----------------ss~~----------sg~~~~~f~g~~~~v~ 55 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFF----------------STSQ----------AGGAAPSFGGKEGTLQ 55 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEe----------------cchh----------hCCcccccCCCcceEE
Confidence 6999999 8999999999777777775 3332 1100 0111234566655554
Q ss_pred eecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-----CCCeEEeecCccccCCC--C--CEEE
Q 027805 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKPE--L--NIVS 150 (218)
Q Consensus 80 ~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-----d~p~~V~gvN~~~~~~~--~--~IIs 150 (218)
...+++. |. ++|+||.|+|...+.+.++...++|++.+||+++|+ |+|++||+||++.+... . ++|+
T Consensus 56 ~~~~~~~--~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIa 131 (369)
T PRK06598 56 DAFDIDA--LK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFV 131 (369)
T ss_pred ecCChhH--hc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEE
Confidence 4333443 42 799999999999999999998899966589999983 69999999999977542 2 4899
Q ss_pred cCChhhhhHHHHHHHHHhhcCeeEEEEEEEeccCCCCc
Q 027805 151 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK 188 (218)
Q Consensus 151 ~aSCtT~~Lap~lk~L~~~fgI~~~~~Ttvha~t~~Q~ 188 (218)
||+|+|++++..|++|+++++|+++.++|+|++|++=+
T Consensus 132 nPnC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~ 169 (369)
T PRK06598 132 GGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGA 169 (369)
T ss_pred cCChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCH
Confidence 99999999999999999999999999999999999853
No 31
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.79 E-value=1.6e-18 Score=157.05 Aligned_cols=166 Identities=19% Similarity=0.265 Sum_probs=119.3
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcCh-hhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~-~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
+||+|+| .|.+|+.+++.+.++|+++|+++.+..... +.+..++.+. .|+.+. + . + ..+.+ +.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~-~~~~~~--------~-~--~--~~~~~-~~ 65 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWI-EPGDMP--------E-Y--V--RDLPI-VE 65 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhcccc-ccCCCc--------c-c--c--ceeEE-Ee
Confidence 4899999 799999999999898999999997642111 1111111000 000000 0 0 0 11222 22
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-----CCCeEEeecCccccCC---------CCC
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKP---------ELN 147 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-----d~p~~V~gvN~~~~~~---------~~~ 147 (218)
.+++ .| .++|+||.|++...+.+.++...++|++ +|+.+++ ++|++++++|++.|.. ..+
T Consensus 66 ~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~--VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~ 139 (341)
T TIGR00978 66 PEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKP--VFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGF 139 (341)
T ss_pred CCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCE--EEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCcc
Confidence 2333 23 3799999999999999998888888883 5666542 4899999999987753 135
Q ss_pred EEEcCChhhhhHHHHHHHHHhhcCeeEEEEEEEeccCCCCccc
Q 027805 148 IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTV 190 (218)
Q Consensus 148 IIs~aSCtT~~Lap~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~ 190 (218)
+|+||+|+|+|+++.+++|+++|+|+++.+||+|++|+.++..
T Consensus 140 iVanPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~ 182 (341)
T TIGR00978 140 IVTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPG 182 (341)
T ss_pred EEeCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCC
Confidence 9999999999999999999999999999999999999999763
No 32
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.78 E-value=3e-18 Score=155.38 Aligned_cols=152 Identities=17% Similarity=0.222 Sum_probs=121.3
Q ss_pred ccEEEEEc-cChhHHHHHHHHH--cCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEE
Q 027805 3 KVKIGING-FGRIGRLVARVIL--QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~--~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (218)
|+||+|+| +|.+|+.++|.+. ..|.++++.+.... + .|+ .+.+.|+.+.+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~-------------~-aG~------------~l~~~~~~l~~- 56 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSE-------------S-AGH------------SVPFAGKNLRV- 56 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcc-------------c-CCC------------eeccCCcceEE-
Confidence 48999999 8999999999998 45888888776531 1 121 23344434444
Q ss_pred eecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC----CCCeEEeecCccccCC--CCCEEEcCC
Q 027805 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK----DAPMFVVGVNENEYKP--ELNIVSNAS 153 (218)
Q Consensus 80 ~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~----d~p~~V~gvN~~~~~~--~~~IIs~aS 153 (218)
+. ++...|. ++|+||.|+|...+.+.++...++|+ ++|+.+++ |+|+++|++|.+.++. ..+||+||+
T Consensus 57 ~~--~~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPg 130 (336)
T PRK05671 57 RE--VDSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPS 130 (336)
T ss_pred ee--CChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCC
Confidence 22 2223353 89999999999888888888888888 68999874 6899999999998764 257999999
Q ss_pred hhhhhHHHHHHHHHhhcCeeEEEEEEEeccCCCC
Q 027805 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ 187 (218)
Q Consensus 154 CtT~~Lap~lk~L~~~fgI~~~~~Ttvha~t~~Q 187 (218)
|+|+++...|++|++.|+++++.++|++++|+.=
T Consensus 131 C~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG 164 (336)
T PRK05671 131 ASAVALAVALAPLKGLLDIQRVQVTACLAVSSLG 164 (336)
T ss_pred cHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccC
Confidence 9999999999999999999999999999999984
No 33
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.76 E-value=9.6e-18 Score=152.55 Aligned_cols=152 Identities=18% Similarity=0.258 Sum_probs=119.7
Q ss_pred ccEEEEEc-cChhHHHHHHHHHc--CCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEE
Q 027805 3 KVKIGING-FGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~--~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (218)
++||+|+| .|.+|+.++|.+.+ .|.++++.+.... | -|+ .+..+|+.+.+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~r-------------s-aGk------------~~~~~~~~~~v- 59 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASAR-------------S-AGK------------KVTFEGRDYTV- 59 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccC-------------C-CCC------------eeeecCceeEE-
Confidence 47999999 99999999999987 6777777664321 1 111 23334434443
Q ss_pred eecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-----CCCeEEeecCccccCCC------CCE
Q 027805 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKPE------LNI 148 (218)
Q Consensus 80 ~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-----d~p~~V~gvN~~~~~~~------~~I 148 (218)
+..+++. | .++|+||.|+|...+.+.++...++|+ +||+.+++ +.|+++|++|.+.++.. ..+
T Consensus 60 ~~~~~~~--~--~~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~i 133 (344)
T PLN02383 60 EELTEDS--F--DGVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGAL 133 (344)
T ss_pred EeCCHHH--H--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcE
Confidence 2223333 3 279999999999999999998888888 78999873 58999999999987642 349
Q ss_pred EEcCChhhhhHHHHHHHHHhhcCeeEEEEEEEeccCCCC
Q 027805 149 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ 187 (218)
Q Consensus 149 Is~aSCtT~~Lap~lk~L~~~fgI~~~~~Ttvha~t~~Q 187 (218)
|+||+|+|++++..|++|+++++|+++.++|++++|+.=
T Consensus 134 IanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG 172 (344)
T PLN02383 134 IANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAG 172 (344)
T ss_pred EECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccC
Confidence 999999999999999999999999999999999999873
No 34
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.70 E-value=2.1e-16 Score=143.55 Aligned_cols=159 Identities=20% Similarity=0.245 Sum_probs=119.5
Q ss_pred CCccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEE
Q 027805 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (218)
Q Consensus 1 m~~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (218)
|| +||+|+| .|.+|+.+++.+.+.|+++++++.+.....+.+ ...|+.+. + + .+ ..+
T Consensus 1 ~m-~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l------~~~~~~~~--------~--~-~~---~~~- 58 (343)
T PRK00436 1 MM-IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPL------SDVHPHLR--------G--L-VD---LVL- 58 (343)
T ss_pred CC-eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcch------HHhCcccc--------c--c-cC---cee-
Confidence 54 7999999 699999999999999999999998742111111 11111111 0 0 00 111
Q ss_pred eecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC------C------------------CCeEEe
Q 027805 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK------D------------------APMFVV 135 (218)
Q Consensus 80 ~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~------d------------------~p~~V~ 135 (218)
.+ .++..+ .++|+||.|++.....+.+...+++|+ +|||.+++ | .|..++
T Consensus 59 ~~--~~~~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lp 132 (343)
T PRK00436 59 EP--LDPEIL--AGADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLP 132 (343)
T ss_pred ec--CCHHHh--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecC
Confidence 11 221123 368999999999999999888888776 89999863 2 589999
Q ss_pred ecCccccCCCCCEEEcCChhhhhHHHHHHHHHhhcCee--EEEEEEEeccCCCCc
Q 027805 136 GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQK 188 (218)
Q Consensus 136 gvN~~~~~~~~~IIs~aSCtT~~Lap~lk~L~~~fgI~--~~~~Ttvha~t~~Q~ 188 (218)
++|.+.++. .++|+||+|+|+++...|++|++..+|+ ++.++|++++|+.=+
T Consensus 133 e~~~~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~ 186 (343)
T PRK00436 133 ELNREEIKG-ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGR 186 (343)
T ss_pred ccCHHHhcC-CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCC
Confidence 999998875 4799999999999999999999999898 899999999998854
No 35
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.65 E-value=5.8e-16 Score=138.49 Aligned_cols=156 Identities=19% Similarity=0.147 Sum_probs=115.0
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEe
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (218)
|+++||||+|+|.||+.++..+.+.++++++++.|+..+.+-+...- + +|.-. . .++.. .++
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~---~-~Gi~~----~--------~~~ie-~LL- 63 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARAR---R-LGVAT----S--------AEGID-GLL- 63 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHH---H-cCCCc----c--------cCCHH-HHH-
Confidence 44799999999999999999888888999999999842222222211 1 22100 0 01100 010
Q ss_pred ecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCC-CCCCeEEeecCccccCC--CCCEEEcCChhhh
Q 027805 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVNENEYKP--ELNIVSNASCTTN 157 (218)
Q Consensus 81 ~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps-~d~p~~V~gvN~~~~~~--~~~IIs~aSCtT~ 157 (218)
++.+|. ++|+||++||.....+.++..+++|+ .+|+..+ ...|++||+||.+.... ..++|++++|+|+
T Consensus 64 ----~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati 135 (302)
T PRK08300 64 ----AMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATI 135 (302)
T ss_pred ----hCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHH
Confidence 111243 78999999999999999999999997 6676655 56999999999987643 3589999999999
Q ss_pred hHHHHHHHHHhhcCeeEEEEEEEeccC
Q 027805 158 CLAPLAKVIHDKFGIVEGLMTTVHSIT 184 (218)
Q Consensus 158 ~Lap~lk~L~~~fgI~~~~~Ttvha~t 184 (218)
.++..++.+++. ++.+.. +||++.+
T Consensus 136 ~~v~Al~~v~~~-~~~eIv-at~~s~s 160 (302)
T PRK08300 136 PIVAAVSRVAPV-HYAEIV-ASIASKS 160 (302)
T ss_pred HHHHHhcccCcC-ceeeee-eeehhhc
Confidence 999999998766 888876 8898887
No 36
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=99.64 E-value=2e-16 Score=129.35 Aligned_cols=49 Identities=51% Similarity=0.786 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhcCeeEEEEEEEeccCCCCccccCCCCCCccccccccccC
Q 027805 159 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGLACFEWKT 208 (218)
Q Consensus 159 Lap~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D~~~~~d~r~~r~a~~~~ 208 (218)
|+|++|+|+++|||++++|||+|++|++|+++|+|+ +||||+|+|++||
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~ni 49 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNI 49 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSS
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccc
Confidence 799999999999999999999999999999999998 9999999999997
No 37
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.63 E-value=2.9e-15 Score=136.26 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=117.4
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
+||+|+| +|.+|+.++|.+.+.|+++++++.++..+.... +...|+.+. + . . ...+ ...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~-----~~~~~~~l~--------~--~-~---~~~~-~~~ 60 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKP-----VSEVHPHLR--------G--L-V---DLNL-EPI 60 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCC-----hHHhCcccc--------c--c-C---Ccee-ecC
Confidence 4899999 699999999999999999999886542111110 011121111 0 0 0 0111 112
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC------------------------CCCeEEeecC
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK------------------------DAPMFVVGVN 138 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~------------------------d~p~~V~gvN 138 (218)
++++ |.+ ++|+||.|++...+.+.++..+++|+ +||+.+++ +.|..++++|
T Consensus 61 ~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n 135 (346)
T TIGR01850 61 DEEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELH 135 (346)
T ss_pred CHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccC
Confidence 2322 212 78999999999999999998888885 68888862 3778999999
Q ss_pred ccccCCCCCEEEcCChhhhhHHHHHHHHHhhcCee--EEEEEEEeccCCCCc
Q 027805 139 ENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQK 188 (218)
Q Consensus 139 ~~~~~~~~~IIs~aSCtT~~Lap~lk~L~~~fgI~--~~~~Ttvha~t~~Q~ 188 (218)
.+.+.. .++|+||+|.|+++...|++|++++.|+ ++.++|++++|+.=+
T Consensus 136 ~~~i~~-~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~ 186 (346)
T TIGR01850 136 REEIKG-ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGR 186 (346)
T ss_pred HHHhCC-CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCc
Confidence 988864 5799999999999999999999999887 799999999999865
No 38
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.59 E-value=9.3e-16 Score=133.66 Aligned_cols=168 Identities=18% Similarity=0.285 Sum_probs=122.0
Q ss_pred CCccEEE-EEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEE
Q 027805 1 MGKVKIG-ING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (218)
Q Consensus 1 m~~~kvg-InG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v 78 (218)
|.-.|+| |.| +|.+|++.+-.+.++|.++|...-...-+.-.- |.+ -|+|. .+.-. --.-+.+++
T Consensus 1 Ma~kk~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~-ya~-----a~~wk-qt~~l------p~~~~e~~V 67 (361)
T KOG4777|consen 1 MALKKSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKR-YAF-----AGNWK-QTDLL------PESAHEYTV 67 (361)
T ss_pred CCcccccceeeccchhHHHHHHHhccCCcceeeeecccccccCCc-eEe-----cccch-hcccc------cchhhhhhH
Confidence 4445777 999 999999999988899998877664331111110 111 23333 22111 001133444
Q ss_pred EeecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-----CCCeEEeecCccccCC---------
Q 027805 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKP--------- 144 (218)
Q Consensus 79 ~~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-----d~p~~V~gvN~~~~~~--------- 144 (218)
.+-+++.+. +.||||...+.....|--+...++|. +|+|+.+. ++|++||.||+|.++.
T Consensus 68 -~ec~~~~F~----ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k 140 (361)
T KOG4777|consen 68 -EECTADSFN----ECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGK 140 (361)
T ss_pred -hhcChhhcc----cccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCC
Confidence 344566665 89999999998888888788888888 99999873 5999999999997653
Q ss_pred --CCCEEEcCChhhhhHHHHHHHHHhhcC-eeEEEEEEEeccCCCCc
Q 027805 145 --ELNIVSNASCTTNCLAPLAKVIHDKFG-IVEGLMTTVHSITATQK 188 (218)
Q Consensus 145 --~~~IIs~aSCtT~~Lap~lk~L~~~fg-I~~~~~Ttvha~t~~Q~ 188 (218)
..-||.|++|+|..+...+|+||++|| |++..++|+||+|+.--
T Consensus 141 ~~~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~ 187 (361)
T KOG4777|consen 141 MGKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGA 187 (361)
T ss_pred CCCceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCc
Confidence 134999999999999999999999995 99999999999998753
No 39
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.58 E-value=2e-14 Score=132.51 Aligned_cols=159 Identities=14% Similarity=0.122 Sum_probs=114.4
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
++||+|+| .|.+|+.++|.+.++|+++|+.+.... . .|+.- .. ....+ .++ ...-++.
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~-s-------------aG~~i-~~----~~~~l-~~~-~~~~~~~ 96 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADR-K-------------AGQSF-GS----VFPHL-ITQ-DLPNLVA 96 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChh-h-------------cCCCc-hh----hCccc-cCc-cccceec
Confidence 47999999 899999999999999999999986531 0 11100 00 00001 111 1111111
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-----C--------CCeEEeecCccc-cC----
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----D--------APMFVVGVNENE-YK---- 143 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-----d--------~p~~V~gvN~~~-~~---- 143 (218)
.+++ +| .++|+||.|+|...+.+.++. ++.|+ +||+.+++ + .|..++++|.+. |.
T Consensus 97 ~~~~--~~--~~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~ 169 (381)
T PLN02968 97 VKDA--DF--SDVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTEL 169 (381)
T ss_pred CCHH--Hh--cCCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchh
Confidence 1222 24 279999999999888888876 56665 68888873 3 588899999874 53
Q ss_pred -----CCCCEEEcCChhhhhHHHHHHHHHhhcCe--eEEEEEEEeccCCCCcc
Q 027805 144 -----PELNIVSNASCTTNCLAPLAKVIHDKFGI--VEGLMTTVHSITATQKT 189 (218)
Q Consensus 144 -----~~~~IIs~aSCtT~~Lap~lk~L~~~fgI--~~~~~Ttvha~t~~Q~~ 189 (218)
...++|+||+|.|+++...|++|+++++| +++.+++++++|+.=+-
T Consensus 170 ~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~ 222 (381)
T PLN02968 170 QREEIKSARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRG 222 (381)
T ss_pred CHHHhcCCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcc
Confidence 23569999999999999999999999999 78999999999998544
No 40
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.55 E-value=3.9e-14 Score=127.44 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=109.1
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
++||||+| .|..|+.++|.+.++|+++++++.... ++.+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~----------------------------~~~~------------ 41 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAK----------------------------RKDA------------ 41 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCC----------------------------CCcc------------
Confidence 48999999 999999999999999999988775321 0001
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-----CCCeEEeecCccccCC--CCCEEEcCCh
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKP--ELNIVSNASC 154 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-----d~p~~V~gvN~~~~~~--~~~IIs~aSC 154 (218)
. +.+..|. ++|+||.|++...+.+.++...+.|+ +||+.+++ +.|..++++|++..+. ..++|+||+|
T Consensus 42 ~-~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPgC 116 (313)
T PRK11863 42 A-ARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPGC 116 (313)
T ss_pred c-Cchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCCc
Confidence 0 1111233 68999999999999999998888888 68999873 5899999999763322 4579999999
Q ss_pred hhhhHHHHHHHHHhhcCeeEEEEEEEeccCC
Q 027805 155 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITA 185 (218)
Q Consensus 155 tT~~Lap~lk~L~~~fgI~~~~~Ttvha~t~ 185 (218)
.++++...|+||+++..|++...++++++|+
T Consensus 117 ~~Ta~~laL~PL~~~~li~~~~~i~i~a~SG 147 (313)
T PRK11863 117 YPTGAIALLRPLVDAGLLPADYPVSINAVSG 147 (313)
T ss_pred HHHHHHHHHHHHHHcCCcccCceEEEEEccc
Confidence 9999999999999986666655788999964
No 41
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.46 E-value=5.1e-13 Score=118.85 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=112.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
++||||+|.|+||+.++..+++.++++++++.|+..+.+.+... .+ +|. . ...++.. .+++
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A---~~-~Gi----~--------~~~~~~e-~ll~-- 61 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA---RE-LGV----K--------TSAEGVD-GLLA-- 61 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH---HH-CCC----C--------EEECCHH-HHhc--
Confidence 37999999999999998888888899999999984322222111 11 221 0 1111100 0001
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCccccCC--CCCEEEcCChhhhhHH
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKP--ELNIVSNASCTTNCLA 160 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~~~~~--~~~IIs~aSCtT~~La 160 (218)
+.++|+|++||+.....+.+...+++|. .||.-.|....|++|+.||.+.... ..++|++++|.|+.+.
T Consensus 62 --------~~dIDaV~iaTp~~~H~e~a~~al~aGk-~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~~ 132 (285)
T TIGR03215 62 --------NPDIDIVFDATSAKAHARHARLLAELGK-IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIV 132 (285)
T ss_pred --------CCCCCEEEECCCcHHHHHHHHHHHHcCC-EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHHH
Confidence 1268999999999999999999999986 4444445567999999999986543 4689999999999999
Q ss_pred HHHHHHHhhcCeeEEEEEEEeccCC
Q 027805 161 PLAKVIHDKFGIVEGLMTTVHSITA 185 (218)
Q Consensus 161 p~lk~L~~~fgI~~~~~Ttvha~t~ 185 (218)
..++.+++...+ ..++|+++.+.
T Consensus 133 ~al~r~~d~~~~--~iv~ti~s~S~ 155 (285)
T TIGR03215 133 AAISRVAPVHYA--EIVASIASRSA 155 (285)
T ss_pred HHHHHhhccccE--EEEEEEEeecc
Confidence 999999988765 46688999886
No 42
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.46 E-value=4.4e-13 Score=120.34 Aligned_cols=137 Identities=15% Similarity=0.192 Sum_probs=109.3
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
.||+|+| .|..|..++|.+..+|++|++.+.... . ++. .
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~----~------~~~------------------------------~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR----R------KDA------------------------------A 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc----c------cCc------------------------------C
Confidence 4899999 899999999999999999999886531 0 010 0
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-----CCCeEEeecCccccCC--CCCEEEcCChh
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKP--ELNIVSNASCT 155 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-----d~p~~V~gvN~~~~~~--~~~IIs~aSCt 155 (218)
+++++ + .++|+||.|++...+.+.++...++|+ +||+.+++ +.|..++++|.+..+. ..++|+||+|.
T Consensus 42 ~~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 42 ERAKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred CHhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 11111 1 168999999999999999988777887 68999863 5899999998664332 45799999999
Q ss_pred hhhHHHHHHHHHhhcCeeEEEEEEEeccCC
Q 027805 156 TNCLAPLAKVIHDKFGIVEGLMTTVHSITA 185 (218)
Q Consensus 156 T~~Lap~lk~L~~~fgI~~~~~Ttvha~t~ 185 (218)
+++++..|+||+++..|++...+++++.|+
T Consensus 117 aTa~~LaL~PL~~~~li~~~~~~~~~a~SG 146 (310)
T TIGR01851 117 PTGFIALMRPLVEAGILPADFPITINAVSG 146 (310)
T ss_pred HHHHHHHHHHHHHcCCccccceEEEEeccc
Confidence 999999999999997777666799999986
No 43
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.01 E-value=4.2e-10 Score=87.47 Aligned_cols=112 Identities=26% Similarity=0.342 Sum_probs=79.4
Q ss_pred EEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcCh-hhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 5 KIGING-FGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 5 kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~-~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
||||+| +|.+|+.+++.+.+.|+++++.+.....+. ..+ ...++... . ...+.+ ++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~------~~~~~~~~-------~-------~~~~~~-~~~ 59 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPL------SEVFPHPK-------G-------FEDLSV-EDA 59 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBH------HHTTGGGT-------T-------TEEEBE-EET
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCee------ehhccccc-------c-------ccceeE-eec
Confidence 799999 999999999999999999999998764211 112 22222111 0 112222 122
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCC-----CCCeEEeecCccccC
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYK 143 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~-----d~p~~V~gvN~~~~~ 143 (218)
+++.+ .++|+||.|++...+.+.++..++.|+ .||+.+++ +.|+.++++|.+.+.
T Consensus 60 ~~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 60 DPEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp SGHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred chhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 33333 289999999999999999999999999 78999873 589999999988653
No 44
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.45 E-value=1.5e-06 Score=79.13 Aligned_cols=141 Identities=18% Similarity=0.244 Sum_probs=94.4
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
|+||+|+| .|..|-.++|.+..+|++|+..+......-+.+ ...|..+. +- + ..++ +.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~------~~~~p~l~-g~----------~---~l~~-~~ 60 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPV------SDVHPNLR-GL----------V---DLPF-QT 60 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCch------HHhCcccc-cc----------c---cccc-cc
Confidence 48999999 899999999999999999966665431000000 01111111 00 0 1111 22
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCC-C--------------------CeEEee---c
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-A--------------------PMFVVG---V 137 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d-~--------------------p~~V~g---v 137 (218)
.+++++ ...++|+||-|++-..+++.++..++.|.+ ||+.+.+- . .--||| .
T Consensus 61 ~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl 136 (349)
T COG0002 61 IDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPEL 136 (349)
T ss_pred CChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCccc
Confidence 344444 233689999999999999999999988884 88887531 0 244554 3
Q ss_pred CccccCCCCCEEEcCChhhhhHHHHHHHHHhh
Q 027805 138 NENEYKPELNIVSNASCTTNCLAPLAKVIHDK 169 (218)
Q Consensus 138 N~~~~~~~~~IIs~aSCtT~~Lap~lk~L~~~ 169 (218)
|.+++. .-+.|+||.|-.+|....++||-+.
T Consensus 137 ~~e~i~-~A~lIAnPGCypTa~iLal~PL~~~ 167 (349)
T COG0002 137 HREKIR-GAKLIANPGCYPTAAILALAPLVKA 167 (349)
T ss_pred CHHHHh-cCCEeeCCCchHHHHHHHHHHHHHc
Confidence 444443 3578999999999999999999877
No 45
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.27 E-value=2.9e-06 Score=76.97 Aligned_cols=92 Identities=25% Similarity=0.336 Sum_probs=65.3
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEe
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (218)
|+++||||+|+|.||+.+++++.+.|++||+++.|.. +++.+. .. .+.+ .
T Consensus 1 M~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~-~~~~~~-----~~-~~v~-----------------------~ 50 (324)
T TIGR01921 1 MSKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR-GAETLD-----TE-TPVY-----------------------A 50 (324)
T ss_pred CCCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC-cHHHHh-----hc-CCcc-----------------------c
Confidence 7779999999999999999999999999999999974 223221 00 0100 0
Q ss_pred ecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCC
Q 027805 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (218)
Q Consensus 81 ~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~p 126 (218)
..+...+ . .++|+|+-||+.....+.+...+++|. .||.+.+
T Consensus 51 ~~d~~e~--l-~~iDVViIctPs~th~~~~~~~L~aG~-NVV~s~~ 92 (324)
T TIGR01921 51 VADDEKH--L-DDVDVLILCMGSATDIPEQAPYFAQFA-NTVDSFD 92 (324)
T ss_pred cCCHHHh--c-cCCCEEEEcCCCccCHHHHHHHHHcCC-CEEECCC
Confidence 0111111 1 368999999999999999999999987 4555543
No 46
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.21 E-value=3.8e-06 Score=64.84 Aligned_cols=111 Identities=23% Similarity=0.236 Sum_probs=68.8
Q ss_pred EEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 5 KIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 5 kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
|+||+| .|++|+.+++.+.+.++++++++.+.. .+.- ..+ ...+++.. .+ +....+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~--~~~~-~~~--~~~~~~~~----------~~--------~~~~~~ 57 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA--RSAG-KRV--SEAGPHLK----------GE--------VVLELE 57 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEech--hhcC-cCH--HHHCcccc----------cc--------cccccc
Confidence 689999 699999999999988899999996531 1100 000 00111100 00 001111
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHH---HHHhCCCCEEEEeCCCC-----CCCeEEeecCcccc
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAA---AHLKGGAKKVIISAPSK-----DAPMFVVGVNENEY 142 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~---~h~~~GakkViis~ps~-----d~p~~V~gvN~~~~ 142 (218)
+. .|...+.|+||-|++.-...+... ..++.| +++|+.++. +.|..++++|.+.+
T Consensus 58 ~~--~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g--~~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 58 PE--DFEELAVDIVFLALPHGVSKEIAPLLPKAAEAG--VKVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred cC--ChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCC--CEEEECCccccCCCCceEEcCccCHHHh
Confidence 22 243458899999999876666433 223344 489998863 57899999997754
No 47
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.13 E-value=9e-06 Score=71.52 Aligned_cols=92 Identities=25% Similarity=0.359 Sum_probs=62.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
+||||+|+|+||+.+++.+.+.++++++++.+.....+.... . + . ..+.++ .+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~--------------~--------~--~-~~~~~~--~d 54 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRR--------------A--------L--G-EAVRVV--SS 54 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhh--------------h--------h--c-cCCeee--CC
Confidence 699999999999999999988889999999864211111100 0 0 0 011222 23
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCC
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~p 126 (218)
.+++ +..+|+|+|||+.....+.+...+++|. .|++-.|
T Consensus 55 ~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk-~Vvi~s~ 93 (265)
T PRK13303 55 VDAL---PQRPDLVVECAGHAALKEHVVPILKAGI-DCAVISV 93 (265)
T ss_pred HHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCC-CEEEeCh
Confidence 3344 2368999999998888899999999986 4555444
No 48
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.07 E-value=1.2e-05 Score=71.00 Aligned_cols=92 Identities=21% Similarity=0.254 Sum_probs=61.8
Q ss_pred CCccEEEEEccChhHHHHHHHHHc-CCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEE
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~-~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (218)
|+++||||+|+|+||+.+++.+.. .++++++++.|+ +++...-+.+ -+|. . ..
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr--~~~~a~~~a~---~~g~----------~----------~~- 57 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR--DPQRHADFIW---GLRR----------P----------PP- 57 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC--CHHHHHHHHH---hcCC----------C----------cc-
Confidence 567999999999999999999987 478999999997 3433211110 0110 0 00
Q ss_pred eecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEE
Q 027805 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (218)
Q Consensus 80 ~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkVii 123 (218)
..+++++. ..+|+|++|++.....+.+...+++|. .|++
T Consensus 58 -~~~~eell---~~~D~Vvi~tp~~~h~e~~~~aL~aGk-~Vi~ 96 (271)
T PRK13302 58 -VVPLDQLA---THADIVVEAAPASVLRAIVEPVLAAGK-KAIV 96 (271)
T ss_pred -cCCHHHHh---cCCCEEEECCCcHHHHHHHHHHHHcCC-cEEE
Confidence 01233332 157999999998888888888888875 3443
No 49
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.07 E-value=1.2e-05 Score=71.17 Aligned_cols=144 Identities=18% Similarity=0.206 Sum_probs=88.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcC--CCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEe
Q 027805 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~--~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (218)
++||||+|+|.||+.+++.+... +.+++++|++.. ++....+. + . .++
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~--~~~~~~~~------------------~-~-------~~~-- 51 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNA--ADLPPALA------------------G-R-------VAL-- 51 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCC--HHHHHHhh------------------c-c-------Ccc--
Confidence 58999999999999999988753 459999998862 22211110 0 0 111
Q ss_pred ecCCCCC-CccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCC-CCCCeEEeecCccccCCCCCEEEcCChhhhh
Q 027805 81 VRNPEEI-PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVNENEYKPELNIVSNASCTTNC 158 (218)
Q Consensus 81 ~~~p~~i-~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps-~d~p~~V~gvN~~~~~~~~~IIs~aSCtT~~ 158 (218)
..+++++ .| .+|+|+||.|...-+++++..|++|..-+++|-.. .|. -|--.+- +.......-|--||-..-.
T Consensus 52 ~~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~-~~~~~l~-~~A~~~g~~i~ipSGAigG 126 (267)
T PRK13301 52 LDGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADD-ALRARLI-AAAEAGGARIRVPAGAIAG 126 (267)
T ss_pred cCCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCH-HHHHHHH-HHHHhCCCEEEEeChHHHh
Confidence 1234443 33 68999999999999999999999999887776442 331 1110000 0111112234446666555
Q ss_pred HHHHHHHHHhhcCeeEEEEEEEecc
Q 027805 159 LAPLAKVIHDKFGIVEGLMTTVHSI 183 (218)
Q Consensus 159 Lap~lk~L~~~fgI~~~~~Ttvha~ 183 (218)
|--+-. . ...|++++.+||--..
T Consensus 127 lD~l~a-a-~~~~~~~v~~~t~K~P 149 (267)
T PRK13301 127 LDYLQA-V-AGRDDAEVVYESRKPV 149 (267)
T ss_pred HHHHHH-h-hccCceEEEEEEecCh
Confidence 544333 2 3468999988876444
No 50
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.97 E-value=1.6e-05 Score=70.06 Aligned_cols=98 Identities=20% Similarity=0.325 Sum_probs=62.8
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
+||+|+| +|++|+.+++.+.+.|+++++++.|.. +.+.. ..|. +.+. + +.-.| +.++ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~-~~~~~----~~~~--~~~~--------~--~~~~g--v~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH-GSSLQ----GTDA--GELA--------G--IGKVG--VPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-Ccccc----CCCH--HHhc--------C--cCcCC--ceee--C
Confidence 6999999 799999999999988999999999842 22111 0110 1000 0 00001 2221 2
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCC
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~p 126 (218)
+++++ ...+|+|+|+|......+.+...+++|.. ||+-.+
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVigtt 100 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVVGTT 100 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEEECC
Confidence 34333 13589999999988888888888888864 454333
No 51
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.88 E-value=4.5e-06 Score=65.34 Aligned_cols=94 Identities=32% Similarity=0.363 Sum_probs=56.6
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~-GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
|||+|+|+ ||+||.+++.+.+.++++|+++.|...+ +. .|+-- +++- + .....+.++ .
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~-~~----------~g~d~-g~~~---~----~~~~~~~v~--~ 59 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS-AK----------VGKDV-GELA---G----IGPLGVPVT--D 59 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS-TT----------TTSBC-HHHC---T----SST-SSBEB--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc-cc----------ccchh-hhhh---C----cCCcccccc--h
Confidence 59999998 9999999999999999999999987421 11 11111 1100 0 001111221 2
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEE
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKV 121 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkV 121 (218)
+.+++. ..+|++||.|-.....+.++..++.|.+-|
T Consensus 60 ~l~~~~---~~~DVvIDfT~p~~~~~~~~~~~~~g~~~V 95 (124)
T PF01113_consen 60 DLEELL---EEADVVIDFTNPDAVYDNLEYALKHGVPLV 95 (124)
T ss_dssp -HHHHT---TH-SEEEEES-HHHHHHHHHHHHHHT-EEE
T ss_pred hHHHhc---ccCCEEEEcCChHHhHHHHHHHHhCCCCEE
Confidence 232221 138999999977777777778888877433
No 52
>PRK11579 putative oxidoreductase; Provisional
Probab=97.78 E-value=0.00011 Score=66.50 Aligned_cols=95 Identities=25% Similarity=0.386 Sum_probs=65.4
Q ss_pred CC-ccEEEEEccChhHHH-HHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEE
Q 027805 1 MG-KVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (218)
Q Consensus 1 m~-~~kvgInG~GrIGr~-~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v 78 (218)
|+ ++||||+|+|.||+. +++++...+++++++|+|+ +.+...- +| + .. ++
T Consensus 1 m~~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~--~~~~~~~--~~-------~-~~----------------~~ 52 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS--DATKVKA--DW-------P-TV----------------TV 52 (346)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC--CHHHHHh--hC-------C-CC----------------ce
Confidence 53 589999999999984 6777777789999999997 4433210 01 1 00 01
Q ss_pred EeecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCC
Q 027805 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS 127 (218)
Q Consensus 79 ~~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps 127 (218)
+ .+.+++- .+.++|+|+-||+.....+.+...+++| |.|++--|-
T Consensus 53 ~--~~~~ell-~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (346)
T PRK11579 53 V--SEPQHLF-NDPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVVDKPF 97 (346)
T ss_pred e--CCHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEeCCC
Confidence 1 1122221 1237899999999999999999999998 468877773
No 53
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.69 E-value=0.00014 Score=66.30 Aligned_cols=34 Identities=35% Similarity=0.720 Sum_probs=30.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC---------CceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~---------~~~vvaInd~ 36 (218)
++||||+|+|.||+.+++.+.+.+ +++|++|.|.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 589999999999999999887552 6999999985
No 54
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.67 E-value=9.4e-05 Score=56.17 Aligned_cols=94 Identities=30% Similarity=0.467 Sum_probs=66.4
Q ss_pred cEEEEEccChhHHHHHHHHHcC-CCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~-~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
+||||+|+|.+|+.+++++... +++++++|.|+ +++...... ..+| .. .+ .
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~--~~~~~~~~~---~~~~----~~-----------------~~--~ 52 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP--DPERAEAFA---EKYG----IP-----------------VY--T 52 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS--SHHHHHHHH---HHTT----SE-----------------EE--S
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC--CHHHHHHHH---HHhc----cc-----------------ch--h
Confidence 5999999999999999999877 89999999998 443322111 0011 00 10 1
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCC
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS 127 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps 127 (218)
+.+++ ..+.++|+|+-||+.....+.+...+++|. .|++.-|-
T Consensus 53 ~~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 53 DLEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp SHHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred HHHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 11221 112378999999999999899999999998 78887774
No 55
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.65 E-value=0.00015 Score=63.82 Aligned_cols=91 Identities=26% Similarity=0.367 Sum_probs=61.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCC-CceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~-~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
+||||+|+|+||+.+++.+.+.+ +++++++.|+ +.+....+.+ .+ + ...+ .
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~--~~~~a~~~a~---~~------------~---------~~~~--~ 53 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR--NLEKAENLAS---KT------------G---------AKAC--L 53 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC--CHHHHHHHHH---hc------------C---------CeeE--C
Confidence 59999999999999999988764 7999999997 3433322211 00 0 0111 2
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCC
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~p 126 (218)
+.+++. .++|+|++|++...-.+.+...+++|.. |++..+
T Consensus 54 ~~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~-Vvv~s~ 93 (265)
T PRK13304 54 SIDELV---EDVDLVVECASVNAVEEVVPKSLENGKD-VIIMSV 93 (265)
T ss_pred CHHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCC-EEEEch
Confidence 233332 2689999999987777888888888863 555433
No 56
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.64 E-value=0.00015 Score=63.40 Aligned_cols=84 Identities=21% Similarity=0.303 Sum_probs=55.8
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~-GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
+||+|+|+ |+||+.+++.+.+.++++++++.|.. ++..... +. + .+.+ ..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~--~~~~~~~---~~-~---------------------~i~~--~~ 52 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP--GSPLVGQ---GA-L---------------------GVAI--TD 52 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC--Ccccccc---CC-C---------------------Cccc--cC
Confidence 69999997 99999999998888899999999873 2221000 00 0 0001 11
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCC
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~Gak 119 (218)
+.+++- .++|+|+|+|......+.+...+++|..
T Consensus 53 dl~~ll---~~~DvVid~t~p~~~~~~~~~al~~G~~ 86 (257)
T PRK00048 53 DLEAVL---ADADVLIDFTTPEATLENLEFALEHGKP 86 (257)
T ss_pred CHHHhc---cCCCEEEECCCHHHHHHHHHHHHHcCCC
Confidence 222221 1578999888877677888888888863
No 57
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.57 E-value=0.00014 Score=68.26 Aligned_cols=95 Identities=22% Similarity=0.352 Sum_probs=57.8
Q ss_pred CCccEEEEEccChhHHHHHHHHHcC---------CCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEE
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQR---------DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF 71 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~---------~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i 71 (218)
|+++||||+|+|.||+.+++.+.++ .++++++|.|.. .+.. .-+ + .
T Consensus 1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~--~~~~-~~~--~--------------------~ 55 (426)
T PRK06349 1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRD--LEKD-RGV--D--------------------L 55 (426)
T ss_pred CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCC--hhhc-cCC--C--------------------C
Confidence 7779999999999999998877543 268999999863 2211 000 0 0
Q ss_pred CCEEEEEEeecCCCCCCccCCCccEEEeeCCcc-cCHHhHHHHHhCCCCEEEEeCC
Q 027805 72 GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF-TDKDKAAAHLKGGAKKVIISAP 126 (218)
Q Consensus 72 ~g~~i~v~~~~~p~~i~W~~~gvDiVve~tg~f-~~~~~a~~h~~~GakkViis~p 126 (218)
.+ ..++ .+++++ ..+..+|+|+||||.. ...+.....+++|. .||..++
T Consensus 56 ~~--~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVtaNK 105 (426)
T PRK06349 56 PG--ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK-HVVTANK 105 (426)
T ss_pred cc--ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEEcCH
Confidence 00 0010 122222 1234789999999864 33566667788874 4443344
No 58
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.51 E-value=0.00041 Score=60.22 Aligned_cols=153 Identities=24% Similarity=0.257 Sum_probs=92.2
Q ss_pred cEEEEEccChhHHHHHHHHHcC-CCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~-~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
++|||+|+|.||+.+++.+.+- .++|++++.|. +.+..-.+. .|+ .+... .
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~--~~ek~~~~~--~~~-------------------~~~~~-----s 52 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR--DEEKAKELE--ASV-------------------GRRCV-----S 52 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecC--CHHHHHHHH--hhc-------------------CCCcc-----c
Confidence 4899999999999999988754 46999999997 444432221 111 11000 1
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCC-CCCCeEEeecCccccCCCCCEEEcCChhhhhHHH
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVNENEYKPELNIVSNASCTTNCLAP 161 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps-~d~p~~V~gvN~~~~~~~~~IIs~aSCtT~~Lap 161 (218)
+.+++- ..+|+++||.+...-++++++.|++|..-+|+|-+. .| |-+.--. .+..+....-|--+|-..-+|--
T Consensus 53 ~ide~~---~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad-~~l~erl-~~lak~~~~rv~~pSGAiGGlD~ 127 (255)
T COG1712 53 DIDELI---AEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALAD-EGLRERL-RELAKCGGARVYLPSGAIGGLDA 127 (255)
T ss_pred cHHHHh---hccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccC-hHHHHHH-HHHHhcCCcEEEecCccchhHHH
Confidence 111111 278999999998888899999999999888887763 22 2111000 00011122334455555444443
Q ss_pred HHHHHHhhcCeeEEEEEEEeccCCCCcccc
Q 027805 162 LAKVIHDKFGIVEGLMTTVHSITATQKTVD 191 (218)
Q Consensus 162 ~lk~L~~~fgI~~~~~Ttvha~t~~Q~~~D 191 (218)
+ +.+ +.-+|+++..||.-....-|.-++
T Consensus 128 l-~aa-r~g~i~~V~lttrKpp~~lg~dl~ 155 (255)
T COG1712 128 L-AAA-RVGGIEEVVLTTRKPPAELGIDLE 155 (255)
T ss_pred H-HHh-hcCCeeEEEEEeecChHHhCcCcc
Confidence 2 222 234799999999877774443333
No 59
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00072 Score=59.76 Aligned_cols=100 Identities=26% Similarity=0.270 Sum_probs=64.8
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
++||+|+| .||+||.+.+++.+.|++++++.-|...+. . .|+-. +++ +-++-..+.++
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~-~----------~g~d~-ge~-------~g~~~~gv~v~-- 60 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSL-S----------LGSDA-GEL-------AGLGLLGVPVT-- 60 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCcc-c----------cccch-hhh-------ccccccCceee--
Confidence 48999999 599999999999999999999998763111 1 11111 111 00110112221
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCC
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~p 126 (218)
.++. -.....|++||-|-...+.+.++..++.|.+-||=|..
T Consensus 61 ~~~~---~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTG 102 (266)
T COG0289 61 DDLL---LVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTG 102 (266)
T ss_pred cchh---hcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCC
Confidence 1211 22347899999999888889998888888766655554
No 60
>PRK10206 putative oxidoreductase; Provisional
Probab=97.12 E-value=0.0014 Score=59.62 Aligned_cols=94 Identities=17% Similarity=0.248 Sum_probs=61.7
Q ss_pred cEEEEEccChhHH-HHHHHHHc-CCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 4 VKIGINGFGRIGR-LVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 4 ~kvgInG~GrIGr-~~~r~~~~-~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
+||||+|+|++++ .+++++.. .+++++++|+|+. .+.....-+|.- + +++
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~--~~~~~~~~~~~~---------~---------------~~~-- 53 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRH--AKPEEQAPIYSH---------I---------------HFT-- 53 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCC--hhHHHHHHhcCC---------C---------------ccc--
Confidence 7999999999875 46776654 4689999999984 222111111110 0 010
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCC
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS 127 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps 127 (218)
.|.+++ ..+.++|.|+-||+.....+.+...+++| |.|++--|-
T Consensus 54 ~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (344)
T PRK10206 54 SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKPF 97 (344)
T ss_pred CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecCC
Confidence 111211 12237899999999999999999999998 578887773
No 61
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.12 E-value=0.002 Score=57.17 Aligned_cols=98 Identities=24% Similarity=0.301 Sum_probs=65.8
Q ss_pred CCccEEEEEccChhHH-HHHHHHHcCCC-ceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEE
Q 027805 1 MGKVKIGINGFGRIGR-LVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (218)
Q Consensus 1 m~~~kvgInG~GrIGr-~~~r~~~~~~~-~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v 78 (218)
|+++||||+|+|.+++ .++..+.+.++ ++++++.|+ +++....+. ..+|. . +.
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~--~~~~a~~~a---~~~~~----~----------------~~ 55 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR--DPERAEAFA---EEFGI----A----------------KA 55 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC--CHHHHHHHH---HHcCC----C----------------cc
Confidence 6789999999997765 58888888777 799999998 444432221 11110 0 00
Q ss_pred EeecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCC
Q 027805 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS 127 (218)
Q Consensus 79 ~~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps 127 (218)
+ .+.+++ ..+..+|+|+=||+.....+.+...+++|. .|++--|-
T Consensus 56 ~--~~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKPl 100 (342)
T COG0673 56 Y--TDLEEL-LADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKPL 100 (342)
T ss_pred c--CCHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCCC
Confidence 0 111111 011258999999999999999999999987 67877773
No 62
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0026 Score=58.52 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=34.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhh
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYM 43 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ 43 (218)
.+|||++|.|.+|+-++-.+...|++++|+|+|.+.+....
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~ 57 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKR 57 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHH
Confidence 58999999999999888777788999999999986554333
No 63
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.01 E-value=0.00081 Score=61.26 Aligned_cols=108 Identities=29% Similarity=0.372 Sum_probs=58.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcC---------CCceEEEEeCCCcChhhhhhheeeccccccccCcc-EEE--eCCceEE
Q 027805 3 KVKIGINGFGRIGRLVARVILQR---------DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE-LKV--KDDKTLL 70 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~---------~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~-v~~--~~~~~l~ 70 (218)
++||+|.|||.+|+.+++.+.++ -+++|++|.|..... |+. .|-.. .. .+. +.+ .+.
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~--------~~~-~Gid~-~~l~~~~~~~~-~~~ 70 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTI--------WLP-EDIDL-REAKEVKENFG-KLS 70 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccc--------cCC-CCCCh-HHHHHhhhccC-chh
Confidence 58999999999999999987652 148999999853110 111 11000 00 000 001 000
Q ss_pred -ECCEEEEEEeecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCC
Q 027805 71 -FGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (218)
Q Consensus 71 -i~g~~i~v~~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~p 126 (218)
+. ..... ...+++++ +.+..+|+|||+|+.....+.....++.|. -|+++.
T Consensus 71 ~~~-~~~~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~--~VVtan 122 (336)
T PRK08374 71 NWG-NDYEV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGK--SVVTSN 122 (336)
T ss_pred hcc-ccccc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCC--cEEECC
Confidence 00 00000 00012221 233578999999997766677777777777 445443
No 64
>PLN02775 Probable dihydrodipicolinate reductase
Probab=97.00 E-value=0.0022 Score=57.39 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=31.0
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCC
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPF 37 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~ 37 (218)
.+||.||| .|++|+.+.+++.+ ++++||+..|+.
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~ 45 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTG 45 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccc
Confidence 47999999 89999999999999 899999988864
No 65
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.96 E-value=0.0013 Score=60.30 Aligned_cols=34 Identities=24% Similarity=0.515 Sum_probs=28.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcC---------CCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQR---------DDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~---------~~~~vvaInd~ 36 (218)
+++|+|+|||.||+.+++.+.++ -+++|++|.+.
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~ 44 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence 48999999999999999987532 25889999875
No 66
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.91 E-value=0.0016 Score=59.31 Aligned_cols=34 Identities=35% Similarity=0.649 Sum_probs=29.1
Q ss_pred cEEEEEccChhHHHHHHHHHcC-------CCceEEEEeCCC
Q 027805 4 VKIGINGFGRIGRLVARVILQR-------DDVELVAVNDPF 37 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~-------~~~~vvaInd~~ 37 (218)
+||+|+|||.||+.+++.+.+. .++++|+|.|..
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~ 41 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSK 41 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECC
Confidence 3899999999999999988763 368999999863
No 67
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.67 E-value=0.006 Score=55.71 Aligned_cols=36 Identities=33% Similarity=0.631 Sum_probs=30.8
Q ss_pred CCccEEEEEccChhHHHHHHHHHcC---------CCceEEEEeCC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQR---------DDVELVAVNDP 36 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~---------~~~~vvaInd~ 36 (218)
||++||+|.|||.+|+.++|.+.++ -.+++++|.+.
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 7789999999999999999988753 25888888876
No 68
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=96.51 E-value=0.0074 Score=56.14 Aligned_cols=110 Identities=19% Similarity=0.246 Sum_probs=65.1
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCC-CceEEEEeCCCcChhhhhhhee-eccccccccCccEEEeCCc---eE--EECCEE
Q 027805 4 VKIGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDK---TL--LFGEKP 75 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~-~~~vvaInd~~~~~~~~ayl~k-ydS~~G~~~~~~v~~~~~~---~l--~i~g~~ 75 (218)
.||+|.| +|-||+..++.+...| .++|+++..-. +.+.+..+.+ |.. .-+-..+++ .| .+.+..
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~-n~~~l~~q~~~f~p-------~~v~i~~~~~~~~l~~~l~~~~ 73 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGK-NVELLAEQAREFRP-------KYVVVADEEAAKELKEALAAAG 73 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCC-CHHHHHHHHHHhCC-------CEEEEcCHHHHHHHHHhhccCC
Confidence 5999999 9999999999887665 69999998422 5544433322 211 111111110 01 011212
Q ss_pred EEEEeecC-CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEE
Q 027805 76 VTVFGVRN-PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (218)
Q Consensus 76 i~v~~~~~-p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkVii 123 (218)
++++...+ ..++- ....+|+|+.+++.+...+..-..+++|. +|.+
T Consensus 74 ~~v~~G~~~~~~l~-~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK-~VaL 120 (385)
T PRK05447 74 IEVLAGEEGLCELA-ALPEADVVVAAIVGAAGLLPTLAAIRAGK-RIAL 120 (385)
T ss_pred ceEEEChhHHHHHh-cCCCCCEEEEeCcCcccHHHHHHHHHCCC-cEEE
Confidence 33433322 22211 11269999999999999987778888884 5555
No 69
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.51 E-value=0.0036 Score=47.83 Aligned_cols=84 Identities=27% Similarity=0.401 Sum_probs=48.8
Q ss_pred ccChhHHHHHHHHHcCC---CceEEEEeCCC--cChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecCC
Q 027805 10 GFGRIGRLVARVILQRD---DVELVAVNDPF--ITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (218)
Q Consensus 10 G~GrIGr~~~r~~~~~~---~~~vvaInd~~--~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (218)
|||.||+.+++.+.+.. ++++++|.+.. .+.+..... . +. ... .+.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~----------~-------~~--~~~----------~~~ 51 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF----------P-------DE--AFT----------TDL 51 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH----------T-------HS--CEE----------SSH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc----------c-------cc--ccc----------CCH
Confidence 89999999999998764 79999999873 001100000 0 00 000 111
Q ss_pred CC-CCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCC
Q 027805 85 EE-IPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (218)
Q Consensus 85 ~~-i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~p 126 (218)
++ +.+ ..+|+|||||+.....+.....++.|. -||+++
T Consensus 52 ~~~~~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~n 90 (117)
T PF03447_consen 52 EELIDD--PDIDVVVECTSSEAVAEYYEKALERGK--HVVTAN 90 (117)
T ss_dssp HHHHTH--TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES-
T ss_pred HHHhcC--cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEEC
Confidence 11 111 157999999998777788888888887 455553
No 70
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.40 E-value=0.01 Score=51.15 Aligned_cols=135 Identities=25% Similarity=0.409 Sum_probs=84.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcC-CCce---EEEEeCCCcChhhhhhheee--ccccccccCccEEEeCCceEEECCEEE
Q 027805 3 KVKIGINGFGRIGRLVARVILQR-DDVE---LVAVNDPFITTDYMTYMFKY--DSVHGQWKHHELKVKDDKTLLFGEKPV 76 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~-~~~~---vvaInd~~~~~~~~ayl~ky--dS~~G~~~~~~v~~~~~~~l~i~g~~i 76 (218)
+.||+|+|.|.||-.+.-.++.+ ..+| .|+| || ..+-++...+. .+|| +| +.
T Consensus 4 k~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgi-dp--~sdglaraarlgv~tt~-----------eg----v~---- 61 (310)
T COG4569 4 KRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGI-DP--QSDGLARAARLGVATTH-----------EG----VI---- 61 (310)
T ss_pred cceEEEEccCcccHHHHHHHHhcCCcccceeEEcc-CC--CccHHHHHHhcCCcchh-----------hH----HH----
Confidence 68999999999999766666654 2343 3333 33 23334433221 1111 11 00
Q ss_pred EEEeecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeC-CCCCCCeEEeecCccc-cCC-CCCEEEcCC
Q 027805 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA-PSKDAPMFVVGVNENE-YKP-ELNIVSNAS 153 (218)
Q Consensus 77 ~v~~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~-ps~d~p~~V~gvN~~~-~~~-~~~IIs~aS 153 (218)
.++. -|+ + .++|+|||+|..+...+.+..+.++|.+ .|+- |.+-.|-+|+-+|-+. .+. +...| .
T Consensus 62 ~ll~--~p~-~----~di~lvfdatsa~~h~~~a~~~ae~gi~--~idltpaaigp~vvp~~n~~eh~~a~nvnmv---t 129 (310)
T COG4569 62 GLLN--MPE-F----ADIDLVFDATSAGAHVKNAAALAEAGIR--LIDLTPAAIGPYVVPVVNLEEHVDALNVNMV---T 129 (310)
T ss_pred HHHh--CCC-C----CCcceEEeccccchhhcchHhHHhcCCc--eeecchhccCCeeccccchHHhcCCCCcceE---e
Confidence 0111 121 2 2678999999999999999999999995 3554 4344799999999875 333 34455 6
Q ss_pred hhhhhHHHHHHHHHhhcC
Q 027805 154 CTTNCLAPLAKVIHDKFG 171 (218)
Q Consensus 154 CtT~~Lap~lk~L~~~fg 171 (218)
|-..+-.|++....+...
T Consensus 130 cggqatipiv~avsrvv~ 147 (310)
T COG4569 130 CGGQATIPIVAAVSRVVR 147 (310)
T ss_pred ecCcccchhhhhhhhhee
Confidence 777777787777665433
No 71
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.28 E-value=0.049 Score=46.73 Aligned_cols=35 Identities=23% Similarity=0.492 Sum_probs=31.0
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCC
Q 027805 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (218)
Q Consensus 2 ~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~ 37 (218)
+.+||+|.|||.+|+.+++.+.+. +..+|+|+|..
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~-G~~vV~vsD~~ 56 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE-GGKVLAVSDPD 56 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCC
Confidence 347999999999999999999876 58999999975
No 72
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.15 E-value=0.016 Score=49.15 Aligned_cols=95 Identities=21% Similarity=0.348 Sum_probs=60.2
Q ss_pred ccEEEEEccChhHHHHHHHH-HcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 3 KVKIGINGFGRIGRLVARVI-LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~-~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
+.+|+|+|+|.+|+.+++.+ +...+++++++.|. +++.. |+ .++|.++ ...
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~--d~~~~----------~~--------------~i~g~~v--~~~ 135 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV--DPEKI----------GT--------------KIGGIPV--YHI 135 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC--Chhhc----------CC--------------EeCCeEE--cCH
Confidence 36899999999999998864 34457999999886 23221 10 0122222 111
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCC
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~p 126 (218)
.+..++ ..+.++|+|+-|++.....+-...-+++|.+.++.-.|
T Consensus 136 ~~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 136 DELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 122222 12347999999999876666666777889877655455
No 73
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.13 E-value=0.073 Score=45.95 Aligned_cols=34 Identities=32% Similarity=0.650 Sum_probs=30.5
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 2 ~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
+.+||+|.|||.+|+.+++.+.+. ++++|+|+|.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEA-GAKVVAVSDS 63 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 458999999999999999988776 6999999996
No 74
>PLN02700 homoserine dehydrogenase family protein
Probab=95.95 E-value=0.023 Score=52.83 Aligned_cols=36 Identities=31% Similarity=0.498 Sum_probs=30.0
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC--------CceEEEEeCC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDP 36 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~--------~~~vvaInd~ 36 (218)
|++++|+|+|+|.||+.+++.+.++. ++.|++|.|.
T Consensus 1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 88899999999999999999875321 3788999885
No 75
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.70 E-value=0.065 Score=50.86 Aligned_cols=102 Identities=14% Similarity=0.250 Sum_probs=60.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCc--------Chhhhhhheeecccc-ccccCccEEEeCCceEEECC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI--------TTDYMTYMFKYDSVH-GQWKHHELKVKDDKTLLFGE 73 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~--------~~~~~ayl~kydS~~-G~~~~~~v~~~~~~~l~i~g 73 (218)
..||+|-|||.+|+..++.+.+. +.+||+|+|... +++. |++|-..+ |... + +.+. . |
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~-GakVVavsDs~G~iyn~~GLD~~~---L~~~k~~~~~~l~-~---~~~~----~-~ 298 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQL-GAKVVTCSDSSGYVYDEEGIDLEK---LKEIKEVRRGRIS-E---YAEE----F-G 298 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHH---HHHHHHhcCCchh-h---hhhh----c-C
Confidence 37999999999999999998876 699999999422 2222 22221111 1111 0 0000 0 1
Q ss_pred EEEEEEeecCCCCCCccCCCccEEEeeCC-cccCHHhHHHHHhCCCCEEEEeC
Q 027805 74 KPVTVFGVRNPEEIPWAETGAEYVVESTG-VFTDKDKAAAHLKGGAKKVIISA 125 (218)
Q Consensus 74 ~~i~v~~~~~p~~i~W~~~gvDiVve~tg-~f~~~~~a~~h~~~GakkViis~ 125 (218)
.+. .++++ .| +..+||.+.|+- ..++.+.+..+.+.+|| +|+-+
T Consensus 299 --~~~---i~~~~-i~-~~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIvEg 343 (445)
T PRK09414 299 --AEY---LEGGS-PW-SVPCDIALPCATQNELDEEDAKTLIANGVK-AVAEG 343 (445)
T ss_pred --Cee---cCCcc-cc-ccCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEEcC
Confidence 011 12232 24 357899999985 66777888888766774 44433
No 76
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=95.48 E-value=0.041 Score=49.07 Aligned_cols=29 Identities=31% Similarity=0.549 Sum_probs=26.6
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEE
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
+||.||| .|++|+.+.+++.+ ++++||+.
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~ 30 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPT 30 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEee
Confidence 4899999 89999999999888 89999986
No 77
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.39 E-value=0.035 Score=47.18 Aligned_cols=95 Identities=21% Similarity=0.362 Sum_probs=64.1
Q ss_pred ccEEEEEccChhHHHHHHHHHc-CCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 3 KVKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~-~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
+.++.|+|.|.+|+.++.--+. +.+++++++-|. +++.+ |+. +.+ ++|..-
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv--~~~~V----------G~~--------------~~~--v~V~~~ 135 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV--DPDKV----------GTK--------------IGD--VPVYDL 135 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecC--CHHHh----------Ccc--------------cCC--eeeech
Confidence 3689999999999988765553 567999999886 44422 322 222 233222
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCC
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~p 126 (218)
.+.+++ -.+.++|+++-|.++...-+-+..-.++|.|.++--+|
T Consensus 136 d~le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtP 179 (211)
T COG2344 136 DDLEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTP 179 (211)
T ss_pred HHHHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccc
Confidence 223221 12348999999999988878888889999988554444
No 78
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.38 E-value=0.041 Score=47.31 Aligned_cols=99 Identities=28% Similarity=0.323 Sum_probs=58.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhee--eccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK--YDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~k--ydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
+++.|+|.|++|+.+++.+.+.+ -+++.|-+ +.+.....++ +|. | .+..++...+++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~---d~~~~~~~~~~~~~~-~--------------~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDR---DEERVEEFLADELDT-H--------------VVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEc---CHHHHHHHhhhhcce-E--------------EEEecCCCHHHHHh
Confidence 48999999999999999998874 66777755 3343322111 221 0 12222222222222
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCH-HhHHHHHh-CCCCEEEEeCCCC
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDK-DKAAAHLK-GGAKKVIISAPSK 128 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~-~~a~~h~~-~GakkViis~ps~ 128 (218)
-. + ..+|+++=+||..... --+...++ -|.+++|.-+.++
T Consensus 62 ag---i----~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 62 AG---I----DDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred cC---C----CcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 11 1 2679999999974333 33334444 6899988877764
No 79
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.13 E-value=0.097 Score=44.14 Aligned_cols=31 Identities=26% Similarity=0.589 Sum_probs=26.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
++|+|.|||++|+.+++.+.+. +.+|+ +.|.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~-G~~Vv-v~D~ 59 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE-GAKLI-VADI 59 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEE-EEcC
Confidence 6899999999999999999876 57888 6665
No 80
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.11 E-value=0.041 Score=57.13 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=63.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCce------------EEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEE
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVE------------LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLL 70 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~------------vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~ 70 (218)
+.||+|+|.|+||+.+++.+.+.++++ +|+|+|+ +++....+.+- ++ + ++ .+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~~------~~-~-~~-----~v~ 633 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL--YLKDAKETVEG------IE-N-AE-----AVQ 633 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC--CHHHHHHHHHh------cC-C-Cc-----eEE
Confidence 369999999999999999998877766 7899997 34433222110 00 0 00 111
Q ss_pred ECCEEEEEEeecCCCCCC-ccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCC
Q 027805 71 FGEKPVTVFGVRNPEEIP-WAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (218)
Q Consensus 71 i~g~~i~v~~~~~p~~i~-W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~p 126 (218)
++ + .|++++. +- .++|+|+-|++.+...+-+...+++|+ -+++..
T Consensus 634 lD-----v---~D~e~L~~~v-~~~DaVIsalP~~~H~~VAkaAieaGk--Hvv~ek 679 (1042)
T PLN02819 634 LD-----V---SDSESLLKYV-SQVDVVISLLPASCHAVVAKACIELKK--HLVTAS 679 (1042)
T ss_pred ee-----c---CCHHHHHHhh-cCCCEEEECCCchhhHHHHHHHHHcCC--CEEECc
Confidence 10 1 1222221 10 268999999999999999999999887 345554
No 81
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.04 E-value=0.038 Score=45.49 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=26.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+|||+|+|+||+.+++.+... +++|++.+-.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~ 68 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRS 68 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHT-T-EEEEEESS
T ss_pred CEEEEEEEcCCcCeEeeeeecC-CceeEEeccc
Confidence 6899999999999999999876 4788877654
No 82
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.00 E-value=0.077 Score=46.52 Aligned_cols=102 Identities=15% Similarity=0.088 Sum_probs=57.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC----------CceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceE-EE
Q 027805 3 KVKIGINGFGRIGRLVARVILQRD----------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTL-LF 71 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~----------~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l-~i 71 (218)
..||.|+|.|-+|..+++++.... +++++.+-.-..+...+-.-+-+++.-|+.. .++-. . .+ .+
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~K-a~v~~--~-ri~~~ 86 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNK-AIVLV--N-RLNQA 86 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHH-HHHHH--H-HHHhc
Confidence 479999999999999999997542 3455555322223333333332344466654 33211 1 11 12
Q ss_pred CCEEEEEEeec-CCCCCCccCCCccEEEeeCCcccCHHhHH
Q 027805 72 GEKPVTVFGVR-NPEEIPWAETGAEYVVESTGVFTDKDKAA 111 (218)
Q Consensus 72 ~g~~i~v~~~~-~p~~i~W~~~gvDiVve~tg~f~~~~~a~ 111 (218)
++..++...++ +++++ + .+.|+|++|+..+.++....
T Consensus 87 ~~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~ 124 (244)
T TIGR03736 87 MGTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAIL 124 (244)
T ss_pred cCceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHH
Confidence 34344443321 22222 1 36899999999888775543
No 83
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=94.96 E-value=0.039 Score=41.00 Aligned_cols=92 Identities=21% Similarity=0.303 Sum_probs=60.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEE-ee
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF-GV 81 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~-~~ 81 (218)
+.|+.|+|.|+.|+.++...+...+++++++-|. +++.. | -.++| ++++ ..
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv--~~~~~----------G--------------~~i~g--ipV~~~~ 54 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV--DPEKI----------G--------------KEIGG--IPVYGSM 54 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE--CTTTT----------T--------------SEETT--EEEESSH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc--CCCcc----------C--------------cEECC--EEeeccH
Confidence 4689999999999988866666667888888875 22211 1 11333 3343 11
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCC
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~p 126 (218)
++..+. - ++|+++-|.+.....+.+...+++|.|.++.=+|
T Consensus 55 ~~l~~~--~--~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 55 DELEEF--I--EIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp HHHHHH--C--TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred HHhhhh--h--CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 111111 1 3899999999887778888899999998776544
No 84
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.70 E-value=0.19 Score=44.66 Aligned_cols=149 Identities=17% Similarity=0.216 Sum_probs=78.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheee-----c--cccccccCccEEEeCCceEEECCEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKY-----D--SVHGQWKHHELKVKDDKTLLFGEKPV 76 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~ky-----d--S~~G~~~~~~v~~~~~~~l~i~g~~i 76 (218)
.||||+|.|.+|+.++..++.. +.+|+.. |. +++.+....+. | -..|... .. +.+ -..+ .+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G~~V~l~-d~--~~~~~~~~~~~i~~~~~~~~~~g~~~-~~---~~~--~~~~--~l 73 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-GVDVLVF-ET--TEELATAGRNRIEKSLERAVSRGKLT-ER---ERD--AALA--RL 73 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-CCEEEEE-EC--CHHHHHHHHHHHHHHHHHHHhcccCC-hh---hHH--HHHh--Ce
Confidence 4899999999999999888766 5776544 44 33333221100 0 0012221 00 000 0011 23
Q ss_pred EEEeecCCCCCCccCCCccEEEeeCCcccCHHhH-----HHHH-hCCCCEEEEeCCCC----------CCCeEE---eec
Q 027805 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKA-----AAHL-KGGAKKVIISAPSK----------DAPMFV---VGV 137 (218)
Q Consensus 77 ~v~~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a-----~~h~-~~GakkViis~ps~----------d~p~~V---~gv 137 (218)
++ ..+.+.+ .++|+|+||...-...+.. ..+. ..++ ++.|+.|. ..|--+ --.
T Consensus 74 ~~--~~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf~ 145 (286)
T PRK07819 74 RF--TTDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHFF 145 (286)
T ss_pred Ee--eCCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEecC
Confidence 32 2334333 3899999998855444322 2333 3444 88888763 123222 223
Q ss_pred CccccCCCCCEEEcCChhhhhHHHHHHHHHhhcCe
Q 027805 138 NENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 172 (218)
Q Consensus 138 N~~~~~~~~~IIs~aSCtT~~Lap~lk~L~~~fgI 172 (218)
|+-.+-+--.||..+.+....++.+...+.+..|-
T Consensus 146 ~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk 180 (286)
T PRK07819 146 NPVPVLPLVELVPTLVTSEATVARAEEFASDVLGK 180 (286)
T ss_pred CCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCC
Confidence 32222222357777777777777766666655563
No 85
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.50 E-value=0.15 Score=47.74 Aligned_cols=95 Identities=22% Similarity=0.305 Sum_probs=59.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
+||-|+|.|.||+.+++.+..+.+.+|... |- +.+..+.+. +++.++ ++ .+.++-... ..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iA-dR--s~~~~~~i~--~~~~~~-----v~-----~~~vD~~d~-----~a 61 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIA-DR--SKEKCARIA--ELIGGK-----VE-----ALQVDAADV-----DA 61 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEE-eC--CHHHHHHHH--hhcccc-----ce-----eEEecccCh-----HH
Confidence 599999999999999999988776676644 43 344443332 222111 11 233331111 00
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEE
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKV 121 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkV 121 (218)
..++- .+.|+||.|.+.|.+..-....++.|..-|
T Consensus 62 l~~li---~~~d~VIn~~p~~~~~~i~ka~i~~gv~yv 96 (389)
T COG1748 62 LVALI---KDFDLVINAAPPFVDLTILKACIKTGVDYV 96 (389)
T ss_pred HHHHH---hcCCEEEEeCCchhhHHHHHHHHHhCCCEE
Confidence 00110 145999999999999988888899998543
No 86
>PLN02477 glutamate dehydrogenase
Probab=94.42 E-value=0.41 Score=45.07 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=29.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~ 37 (218)
.+|+|-|||.+|+.+++.+.+. +..||+|+|..
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~-GakVVaVsD~~ 239 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEK-GGKIVAVSDIT 239 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEEEECCC
Confidence 6999999999999999988776 69999999974
No 87
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.34 E-value=0.072 Score=43.12 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=24.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
+|||++|+|.+|+.+++++.+. +++|.+ .|.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-g~~v~~-~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-GYEVTV-YDR 32 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-TTEEEE-EES
T ss_pred CEEEEEchHHHHHHHHHHHHhc-CCeEEe-ecc
Confidence 5999999999999999999876 477664 454
No 88
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.22 E-value=0.11 Score=47.11 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=25.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~ 37 (218)
..||+|+|.|.+|..++..+...+-.+ +.+.|..
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~ 39 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIV 39 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCC
Confidence 368999999999999988776554236 6666764
No 89
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.19 E-value=0.077 Score=41.75 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=29.0
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCC-CcChhhhhhheee
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKY 49 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~-~~~~~~~ayl~ky 49 (218)
||.|+|.|.+|..+++.+...+ +.-+.+.|+ ..+++.+..-+-|
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G-v~~i~ivD~d~v~~~nl~r~~~~ 45 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG-VGKITLIDFDTVELSNLNRQFLA 45 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEcCCCcCcchhhccccC
Confidence 6899999999999999998764 543344443 2344444443333
No 90
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.16 E-value=0.27 Score=44.43 Aligned_cols=34 Identities=38% Similarity=0.510 Sum_probs=25.4
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 2 ~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
+..||+|+|.|.+|..++..+...+-.+ +.+-|.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di 37 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGD-VVLYDV 37 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEEC
Confidence 3579999999999999888776654235 555565
No 91
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.03 E-value=0.11 Score=37.72 Aligned_cols=40 Identities=30% Similarity=0.477 Sum_probs=30.2
Q ss_pred EEEEEccChhHHHHHHHHHcCC--CceEEEEeCCCcChhhhhhh
Q 027805 5 KIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYM 46 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~--~~~vvaInd~~~~~~~~ayl 46 (218)
||||+|+|.+|..+++.+.+.+ .-++.-+++. +++....+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~ 42 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAEL 42 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHH
Confidence 7999999999999999998763 3666666565 55555444
No 92
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.02 E-value=0.25 Score=45.02 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=70.1
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECC-EEEEEEeecC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVTVFGVRN 83 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g-~~i~v~~~~~ 83 (218)
+|.|.|.|.||.+.+..+...+--+|+++ |. +.+.+...-++.. . ...++. +.... ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-d~--~~~Rl~~A~~~~g-------~--------~~~~~~~~~~~~---~~ 229 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-DR--SPERLELAKEAGG-------A--------DVVVNPSEDDAG---AE 229 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe-CC--CHHHHHHHHHhCC-------C--------eEeecCccccHH---HH
Confidence 69999999999887666655554566655 65 4555544322211 0 111211 11000 00
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCcc-ccCCCCCEEEcCC-hhhhhHHH
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNAS-CTTNCLAP 161 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~-~~~~~~~IIs~aS-CtT~~Lap 161 (218)
..++.. ..|+|+||||+|...+.+.+-..++.|-.=+++.-+..+.. ..+.. .+.++..+...-. -.......
T Consensus 230 ~~~~t~-g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~----~~~~~~~~~kel~l~gs~~~~~~~~~~~ 304 (350)
T COG1063 230 ILELTG-GRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDI----PLPAGLVVSKELTLRGSLRPSGREDFER 304 (350)
T ss_pred HHHHhC-CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccC----ccCHHHHHhcccEEEeccCCCCcccHHH
Confidence 001111 13799999999966656666666665554455554543322 12222 2222334444422 23345555
Q ss_pred HHHHHHhh
Q 027805 162 LAKVIHDK 169 (218)
Q Consensus 162 ~lk~L~~~ 169 (218)
+++.|.+.
T Consensus 305 ~~~ll~~g 312 (350)
T COG1063 305 ALDLLASG 312 (350)
T ss_pred HHHHHHcC
Confidence 77776643
No 93
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=93.90 E-value=0.2 Score=47.66 Aligned_cols=112 Identities=14% Similarity=0.227 Sum_probs=64.7
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCC-CceEEEEeCCCcChhhhhhhee-eccccccccCccEEEeCCc---eE--EECCE-
Q 027805 4 VKIGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDK---TL--LFGEK- 74 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~-~~~vvaInd~~~~~~~~ayl~k-ydS~~G~~~~~~v~~~~~~---~l--~i~g~- 74 (218)
.||+|.| +|-||...++.+.+.| +++++++..-. +.+.++...+ |.. .-+-..+.. .| .+.|.
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~-Ni~lL~~q~~~f~p-------~~v~v~d~~~~~~l~~~l~~~~ 129 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGS-NVTLLADQVRKFKP-------KLVAVRNESLVDELKEALADLD 129 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCC-CHHHHHHHHHHhCC-------CEEEEcCHHHHHHHHHhhcCCC
Confidence 6999999 6999999999887665 59999998753 5655544221 211 111111110 00 00110
Q ss_pred -EEEEEee-cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeC
Q 027805 75 -PVTVFGV-RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (218)
Q Consensus 75 -~i~v~~~-~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ 125 (218)
.++++.. .+..++- ....+|+|+.+.+.+.+.+-.-..+++| |+|.+.+
T Consensus 130 ~~~~vl~G~egl~~la-~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VALAN 180 (454)
T PLN02696 130 DKPEIIPGEEGIVEVA-RHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIALAN 180 (454)
T ss_pred CCcEEEECHHHHHHHH-cCCCCCEEEEeCccccchHHHHHHHHCC-CcEEEec
Confidence 1333331 1122211 1126899999999998887766778888 4555543
No 94
>PRK08507 prephenate dehydrogenase; Validated
Probab=93.84 E-value=0.25 Score=43.25 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.2
Q ss_pred EEEEEccChhHHHHHHHHHcCCC-ceEEEEeCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDD-VELVAVNDP 36 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~-~~vvaInd~ 36 (218)
||+|+|+|.+|..+++.+.+.+. .+|++. |.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~-d~ 33 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGY-DH 33 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEE-cC
Confidence 89999999999999999986642 355554 44
No 95
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.49 E-value=0.16 Score=43.30 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=27.3
Q ss_pred CC-ccEEEEEccChhHHHHHHHHHcCC--Cce-EEEEeCC
Q 027805 1 MG-KVKIGINGFGRIGRLVARVILQRD--DVE-LVAVNDP 36 (218)
Q Consensus 1 m~-~~kvgInG~GrIGr~~~r~~~~~~--~~~-vvaInd~ 36 (218)
|| .+||+|+|.|++|+.+++.+...+ .++ ++..++.
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~ 40 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS 40 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence 54 689999999999999999987653 354 5555543
No 96
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=93.36 E-value=0.51 Score=44.97 Aligned_cols=101 Identities=17% Similarity=0.312 Sum_probs=61.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCc--------Chhhhhhheeecccc-ccccCccEEEeCCceEEECCE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI--------TTDYMTYMFKYDSVH-GQWKHHELKVKDDKTLLFGEK 74 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~--------~~~~~ayl~kydS~~-G~~~~~~v~~~~~~~l~i~g~ 74 (218)
.+|+|-|||.+|...++.+.+. +..||+|+|... +.+.+.+++++...+ |... . +.+. ..|
T Consensus 238 k~VaVqG~GnVg~~aa~~L~e~-GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~-~---~~~~----~~~- 307 (454)
T PTZ00079 238 KTVVVSGSGNVAQYAVEKLLQL-GAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLK-E---YAKH----SST- 307 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHH-h---hhhc----cCC-
Confidence 6999999999999999998876 699999999852 244444444332211 1111 0 0000 001
Q ss_pred EEEEEeecCCCCCCccCCCccEEEee-CCcccCHHhHHHHHhCCCCE
Q 027805 75 PVTVFGVRNPEEIPWAETGAEYVVES-TGVFTDKDKAAAHLKGGAKK 120 (218)
Q Consensus 75 ~i~v~~~~~p~~i~W~~~gvDiVve~-tg~f~~~~~a~~h~~~Gakk 120 (218)
.+.. ++++ +|. ..+||.+=| ++..++.+.+..-.+.|||-
T Consensus 308 -a~~~---~~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~ 348 (454)
T PTZ00079 308 -AKYV---PGKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKL 348 (454)
T ss_pred -cEEe---CCcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCeE
Confidence 0111 1222 364 578988866 45777888887766778853
No 97
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=93.32 E-value=0.11 Score=46.74 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=25.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+|||+|||+||+.+++.+... +++|++.+
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~f-gm~V~~~d 175 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAF-GAKVVYYS 175 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhc-CCEEEEEC
Confidence 6899999999999999988655 57877654
No 98
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=93.17 E-value=0.085 Score=53.59 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=28.7
Q ss_pred CccEEEEEccChhHHHHHHHHHcC---------CCceEEEEeCC
Q 027805 2 GKVKIGINGFGRIGRLVARVILQR---------DDVELVAVNDP 36 (218)
Q Consensus 2 ~~~kvgInG~GrIGr~~~r~~~~~---------~~~~vvaInd~ 36 (218)
++++|+|.|||.+|+.+++.+.++ -+++|++|.+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s 500 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS 500 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence 468999999999999999987532 14888999875
No 99
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.09 E-value=0.35 Score=44.51 Aligned_cols=98 Identities=26% Similarity=0.344 Sum_probs=61.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC--CceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEe
Q 027805 3 KVKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~--~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (218)
.+|+||.|.|+|++.+++++...| +.+||||.|+ +.+.. .-| ..-|+ +. + .+++.
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~--s~~~A-~~f--Aq~~~--------------~~-~---~k~y~ 62 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP--SLERA-KEF--AQRHN--------------IP-N---PKAYG 62 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc--cHHHH-HHH--HHhcC--------------CC-C---Ccccc
Confidence 589999999999999999998777 8999999998 33322 111 11111 10 0 01111
Q ss_pred ecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCC
Q 027805 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS 127 (218)
Q Consensus 81 ~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps 127 (218)
. -+++ -++..+|+|.-++..-...|.+-..+..|. .|++--|-
T Consensus 63 s--yEeL-akd~~vDvVyi~~~~~qH~evv~l~l~~~K-~VL~EKPl 105 (351)
T KOG2741|consen 63 S--YEEL-AKDPEVDVVYISTPNPQHYEVVMLALNKGK-HVLCEKPL 105 (351)
T ss_pred C--HHHH-hcCCCcCEEEeCCCCccHHHHHHHHHHcCC-cEEecccc
Confidence 0 0111 012367888888887777777776666553 47776663
No 100
>PRK06487 glycerate dehydrogenase; Provisional
Probab=93.09 E-value=0.14 Score=46.27 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=25.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+|||+|+|+||+.+++.+... +++|++.+
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f-gm~V~~~~ 178 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF-GMRVLIGQ 178 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEEEC
Confidence 5899999999999999988765 57887764
No 101
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=92.87 E-value=0.11 Score=52.82 Aligned_cols=35 Identities=14% Similarity=0.359 Sum_probs=28.6
Q ss_pred CccEEEEEccChhHHHHHHHHHcCC--------CceEEEEeCC
Q 027805 2 GKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDP 36 (218)
Q Consensus 2 ~~~kvgInG~GrIGr~~~r~~~~~~--------~~~vvaInd~ 36 (218)
++++|+|.|||.||+.+++.+.++. +++|++|.+.
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s 506 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANS 506 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 3589999999999999999886432 5788999874
No 102
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=92.83 E-value=0.15 Score=46.45 Aligned_cols=30 Identities=33% Similarity=0.628 Sum_probs=25.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+|||+|||+||+.+++.+... +++|++..
T Consensus 143 kTvGIiG~G~IG~~va~~l~af-gm~v~~~d 172 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF-GMKVIGYD 172 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEC
Confidence 5899999999999999988776 48877654
No 103
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=92.73 E-value=0.19 Score=45.97 Aligned_cols=97 Identities=24% Similarity=0.401 Sum_probs=54.5
Q ss_pred EEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecCCC
Q 027805 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPE 85 (218)
Q Consensus 6 vgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p~ 85 (218)
|.|+|.|.+|+.+++.+.+++.++-+.+.|. +.+.+..+.+. ..+ ..+.. ..++ ..|++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r--~~~~~~~~~~~--~~~----~~~~~-----~~~d--------~~~~~ 59 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR--NPEKAERLAEK--LLG----DRVEA-----VQVD--------VNDPE 59 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEES--SHHHHHHHHT----TT----TTEEE-----EE----------TTTHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC--CHHHHHHHHhh--ccc----cceeE-----EEEe--------cCCHH
Confidence 6899999999999999998877745556665 44544333211 000 11111 1111 12222
Q ss_pred CCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeC
Q 027805 86 EIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (218)
Q Consensus 86 ~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ 125 (218)
.+.=--.+.|+||.|.|.|....-++..+++|+ -.++.
T Consensus 60 ~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~--~yvD~ 97 (386)
T PF03435_consen 60 SLAELLRGCDVVINCAGPFFGEPVARACIEAGV--HYVDT 97 (386)
T ss_dssp HHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT---EEEES
T ss_pred HHHHHHhcCCEEEECCccchhHHHHHHHHHhCC--Ceecc
Confidence 211001267999999999988788888889998 45663
No 104
>PRK06932 glycerate dehydrogenase; Provisional
Probab=92.67 E-value=0.16 Score=45.85 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=24.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
.+|||+|+|+||+.+++.+... +++|++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f-g~~V~~~ 176 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL-GMKVLYA 176 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEEE
Confidence 6999999999999999988655 5777765
No 105
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.60 E-value=0.23 Score=42.98 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=25.5
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC-CceEEEEeCC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRD-DVELVAVNDP 36 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~-~~~vvaInd~ 36 (218)
|| +||+|+|+|.||..+++.+.+.. ....+.+.+.
T Consensus 1 ~m-m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r 36 (267)
T PRK11880 1 MM-KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP 36 (267)
T ss_pred CC-CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence 54 79999999999999999987653 1233445554
No 106
>PLN02928 oxidoreductase family protein
Probab=92.28 E-value=0.19 Score=46.03 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=25.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+|||+|+|+||+.+++.+... +++|++.+
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af-G~~V~~~d 189 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF-GVKLLATR 189 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEEEC
Confidence 5899999999999999998766 47888764
No 107
>PRK07574 formate dehydrogenase; Provisional
Probab=92.27 E-value=0.19 Score=46.87 Aligned_cols=30 Identities=40% Similarity=0.551 Sum_probs=25.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+|||+|+|+||+.+++.+... +++|.+.+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f-G~~V~~~d 222 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF-DVKLHYTD 222 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEC
Confidence 5899999999999999998765 57777664
No 108
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=92.12 E-value=0.19 Score=45.75 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=24.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.++||+|+||||+.++|.+... +++|..-+
T Consensus 147 ktvGIiG~GrIG~avA~r~~~F-gm~v~y~~ 176 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGF-GMKVLYYD 176 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEEEC
Confidence 6999999999999999988744 46665443
No 109
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.07 E-value=0.22 Score=41.86 Aligned_cols=96 Identities=24% Similarity=0.255 Sum_probs=54.1
Q ss_pred EEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecCC
Q 027805 6 IGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (218)
Q Consensus 6 vgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (218)
|.|.| +|.+|+.++++++. ++++|.++.-.. .+..+.-|+. .| -++ .+.+ ..|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~--~~~~~~~l~~---~g----~~v-v~~d--------------~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDP--SSDRAQQLQA---LG----AEV-VEAD--------------YDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSS--HHHHHHHHHH---TT----TEE-EES---------------TT-H
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEecc--chhhhhhhhc---cc----ceE-eecc--------------cCCH
Confidence 67999 89999999999998 579999987642 2222121111 11 010 0111 1122
Q ss_pred CCCCccCCCccEEEeeCCcccCH------HhHHHHHhCCCCEEEEeCC
Q 027805 85 EEIPWAETGAEYVVESTGVFTDK------DKAAAHLKGGAKKVIISAP 126 (218)
Q Consensus 85 ~~i~W~~~gvDiVve~tg~f~~~------~~a~~h~~~GakkViis~p 126 (218)
+.+.=.-.|+|.||.+++..... .-.....++|.|++|.|.-
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence 22221113899999999965222 2233455689999887553
No 110
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=92.04 E-value=0.24 Score=45.46 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=57.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC-CceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~-~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
++||||+|. .+|+.+++++.+.+ +++++||.|. +.+....+.+ -||. ..+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~--~~erA~~~A~---~~gi---------------------~~y-- 53 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQ--GSERSRALAH---RLGV---------------------PLY-- 53 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcC--CHHHHHHHHH---HhCC---------------------Ccc--
Confidence 589999999 68999999998877 8999999998 4443221111 0110 000
Q ss_pred cCCCCCCccCCCccEEEe--eCCcccCHHhHHHHHhCCCCEEEEeCCC
Q 027805 82 RNPEEIPWAETGAEYVVE--STGVFTDKDKAAAHLKGGAKKVIISAPS 127 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve--~tg~f~~~~~a~~h~~~GakkViis~ps 127 (218)
.+.+++. .+.++|+|.= +++.....+.+...+++|. .|++--|-
T Consensus 54 ~~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGk-HVL~EKPl 99 (343)
T TIGR01761 54 CEVEELP-DDIDIACVVVRSAIVGGQGSALARALLARGI-HVLQEHPL 99 (343)
T ss_pred CCHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCCC-eEEEcCCC
Confidence 1122221 1123444443 2345566788888888884 67776664
No 111
>PRK06436 glycerate dehydrogenase; Provisional
Probab=91.95 E-value=0.23 Score=44.77 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=25.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
.+|||+|+|+||+.+++.+... ++++++.+.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~af-G~~V~~~~r 153 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAF-GMNIYAYTR 153 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEEECC
Confidence 6899999999999999977554 588887763
No 112
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=91.93 E-value=0.23 Score=47.75 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=25.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.||||+|.|.+|+-+++.+... +++|+.. |.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-G~~V~l~-D~ 38 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-GHTVLLY-DA 38 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEE-eC
Confidence 6899999999999999988876 5777644 44
No 113
>PRK13243 glyoxylate reductase; Reviewed
Probab=91.90 E-value=0.22 Score=45.23 Aligned_cols=31 Identities=39% Similarity=0.543 Sum_probs=25.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+|||+|+|+||+.+++.+... +++|.+. |+
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~-G~~V~~~-d~ 181 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGF-GMRILYY-SR 181 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEEE-CC
Confidence 6999999999999999998766 4777655 44
No 114
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.87 E-value=0.22 Score=46.57 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+|||+|+|+||+.+++.+... +++|++.+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~f-Gm~V~~~d 181 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESL-GMRVYFYD 181 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEC
Confidence 5899999999999999988765 57877664
No 115
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=91.80 E-value=0.22 Score=45.15 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=25.2
Q ss_pred cEEEEEccChhHHHHHHHHH-cCCCceEEEEeCCC
Q 027805 4 VKIGINGFGRIGRLVARVIL-QRDDVELVAVNDPF 37 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~-~~~~~~vvaInd~~ 37 (218)
.++||+|||+||+.+++.+. .. +++|++ .|+.
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~f-gm~V~~-~~~~ 178 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGF-NMPILY-NARR 178 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcC-CCEEEE-ECCC
Confidence 68999999999999999876 44 577764 4543
No 116
>PRK14030 glutamate dehydrogenase; Provisional
Probab=91.75 E-value=1.3 Score=42.24 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=60.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCc--------ChhhhhhheeeccccccccCccEEEeCCceEEECCE
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI--------TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK 74 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~--------~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~ 74 (218)
-.+|+|-|||.+|+..++.+.+. +..||+|+|... +.+.+.+|++|-..+|... .. ..+ .+.|-
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~-GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~-~~--~~~----~~~ga 299 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATEL-GAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIV-AP--YAE----KFPGS 299 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccH-HH--HHh----cCCCC
Confidence 36999999999999999988775 699999866543 3344555665543222110 00 000 01110
Q ss_pred EEEEEeecCCCCCCccCCCccEEEee-CCcccCHHhHHHHHhCCCCE
Q 027805 75 PVTVFGVRNPEEIPWAETGAEYVVES-TGVFTDKDKAAAHLKGGAKK 120 (218)
Q Consensus 75 ~i~v~~~~~p~~i~W~~~gvDiVve~-tg~f~~~~~a~~h~~~Gakk 120 (218)
+.. +++++ |. ..+||.+=| ++.-++.+.+..-.+.+||-
T Consensus 300 --~~i---~~~~~-~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~ 339 (445)
T PRK14030 300 --TFF---AGKKP-WE-QKVDIALPCATQNELNGEDADKLIKNGVLC 339 (445)
T ss_pred --EEc---CCccc-ee-ccccEEeeccccccCCHHHHHHHHHcCCeE
Confidence 111 12222 43 577887755 45777777777766667743
No 117
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.72 E-value=2.2 Score=37.66 Aligned_cols=143 Identities=16% Similarity=0.164 Sum_probs=74.0
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (218)
++.|+|.|.||...++.+... +.+.+.+.|. +.+.+....+ . ..+|- .+.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~--~~~rl~~a~~-----------------~--~~i~~--------~~~ 196 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAA-GGSPPAVWET--NPRRRDGATG-----------------Y--EVLDP--------EKD 196 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHc-CCceEEEeCC--CHHHHHhhhh-----------------c--cccCh--------hhc
Confidence 689999999999988877655 4665555554 2333211100 0 01110 000
Q ss_pred CCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCcc-ccCCCCCEEEcCChhhhhHHHHH
Q 027805 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNASCTTNCLAPLA 163 (218)
Q Consensus 85 ~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~-~~~~~~~IIs~aSCtT~~Lap~l 163 (218)
...++|+||||+|.-.+.+.+-..++.|.+-+++..+. + ++ .+|.. .+.+...++.....+..-+..++
T Consensus 197 -----~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~-~-~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 266 (308)
T TIGR01202 197 -----PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYT-E-PV---NFDFVPAFMKEARLRIAAEWQPGDLHAVR 266 (308)
T ss_pred -----cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecC-C-Cc---ccccchhhhcceEEEEecccchhHHHHHH
Confidence 12378999999997655555555666565333333322 1 21 12221 22223456655555555677777
Q ss_pred HHHHhhcCeeE-EEEEEEeccCCCCc
Q 027805 164 KVIHDKFGIVE-GLMTTVHSITATQK 188 (218)
Q Consensus 164 k~L~~~fgI~~-~~~Ttvha~t~~Q~ 188 (218)
+.+.+. .+.- -++|........|+
T Consensus 267 ~l~~~g-~i~~~~~it~~~~l~~~~~ 291 (308)
T TIGR01202 267 ELIESG-ALSLDGLITHQRPASDAAE 291 (308)
T ss_pred HHHHcC-CCChhhccceeecHHHHHH
Confidence 777643 3321 23454444444443
No 118
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=91.52 E-value=0.17 Score=39.94 Aligned_cols=33 Identities=39% Similarity=0.646 Sum_probs=27.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+||+|+|.||+|..+.+++.+. +.+|+++...
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~a-g~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARA-GHEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHT-TSEEEEESSC
T ss_pred ccEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeC
Confidence 37999999999999999999876 5899999775
No 119
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=91.49 E-value=0.28 Score=44.93 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=27.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+|||+|+|+||+.+++++... +++|++.+++
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~-G~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS-GVEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-cCEEEEEECc
Confidence 6899999999999999999877 5888777654
No 120
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.48 E-value=0.29 Score=43.09 Aligned_cols=33 Identities=30% Similarity=0.588 Sum_probs=26.4
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
|+ +||||+|+|.+|..+++.+... +.++++ .|+
T Consensus 1 ~~-~~IgviG~G~mG~~~a~~l~~~-g~~v~~-~d~ 33 (296)
T PRK11559 1 MT-MKVGFIGLGIMGKPMSKNLLKA-GYSLVV-YDR 33 (296)
T ss_pred CC-ceEEEEccCHHHHHHHHHHHHC-CCeEEE-EcC
Confidence 54 6999999999999999998865 467664 455
No 121
>PLN02256 arogenate dehydrogenase
Probab=91.33 E-value=0.36 Score=43.43 Aligned_cols=33 Identities=33% Similarity=0.692 Sum_probs=27.1
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 2 ~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
+++||+|+|+|.||..+++.+.+. +.++++++.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~-G~~V~~~d~ 67 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQ-GHTVLATSR 67 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEEC
Confidence 457999999999999999998765 468887654
No 122
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.27 E-value=3.7 Score=36.73 Aligned_cols=141 Identities=14% Similarity=0.110 Sum_probs=71.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
-+|.|.|.|.+|...++.+... +.+++++.-...+.+.+..+.+ .| .+ . ++-..-.+ .+
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~----~G----a~--------~-v~~~~~~~-~~-- 232 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEE----LG----AT--------Y-VNSSKTPV-AE-- 232 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHH----cC----CE--------E-ecCCccch-hh--
Confidence 4789999999999988877665 4677777531112233322211 11 00 0 11000000 00
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCe-EE-eecCccccCCCCCEEEcCChhhhhHHH
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPM-FV-VGVNENEYKPELNIVSNASCTTNCLAP 161 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~-~V-~gvN~~~~~~~~~IIs~aSCtT~~Lap 161 (218)
.. .+ .++|+||||+|.-...+.+-..++.|.+-+++..++.+.+. +- ..++...+.++..++.+-.++..-+..
T Consensus 233 -~~-~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~ 308 (355)
T cd08230 233 -VK-LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQ 308 (355)
T ss_pred -hh-hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHH
Confidence 00 11 37899999999654555556667666543444433331111 11 111222333345566665666556677
Q ss_pred HHHHHHhh
Q 027805 162 LAKVIHDK 169 (218)
Q Consensus 162 ~lk~L~~~ 169 (218)
+++.|.+.
T Consensus 309 ~~~~l~~~ 316 (355)
T cd08230 309 AVEDLAQW 316 (355)
T ss_pred HHHHHHhc
Confidence 77777653
No 123
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=90.97 E-value=0.35 Score=43.70 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+|||+|+|.||+.+++.+... ++++.+.+
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af-G~~V~~~~ 166 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW-GFPLRCWS 166 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 5899999999999999998865 47777664
No 124
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=90.94 E-value=0.35 Score=43.98 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=25.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
++|||+|+|+||+.+++.+... +++|++.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~-G~~V~~~d 176 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF-GATITAYD 176 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEe
Confidence 5899999999999999988765 47777653
No 125
>PLN02602 lactate dehydrogenase
Probab=90.84 E-value=0.52 Score=43.37 Aligned_cols=148 Identities=17% Similarity=0.200 Sum_probs=75.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
.||+|+|.|.||..++..+...+-..-+.+-|...+. +.=...|-.|.. .+.++ .+|....+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~---~~g~a~DL~~~~--------------~~~~~-~~i~~~~d 99 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDK---LRGEMLDLQHAA--------------AFLPR-TKILASTD 99 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCch---hhHHHHHHHhhh--------------hcCCC-CEEEeCCC
Confidence 5999999999999999988766544334444543211 010111332211 11111 23322233
Q ss_pred CCCCCccCCCccEEEeeCCccc----CHH------------hHHHHHhC--CCCEEEEeCCCCCCCeEEeecCccccCCC
Q 027805 84 PEEIPWAETGAEYVVESTGVFT----DKD------------KAAAHLKG--GAKKVIISAPSKDAPMFVVGVNENEYKPE 145 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~----~~~------------~a~~h~~~--GakkViis~ps~d~p~~V~gvN~~~~~~~ 145 (218)
.+++. ++|+||-+.|.-. ++. .++.-.+. .+.-+++|+|. |.-+.+. -....+. .
T Consensus 100 y~~~~----daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv-dv~t~~~-~k~sg~p-~ 172 (350)
T PLN02602 100 YAVTA----GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV-DVLTYVA-WKLSGFP-A 172 (350)
T ss_pred HHHhC----CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch-HHHHHHH-HHHhCCC-H
Confidence 44443 8999999988632 331 11111112 23345666664 2111111 0001121 3
Q ss_pred CCEEEcCChhhhhHHHHHHHHHhhcCeeEEEEE
Q 027805 146 LNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 178 (218)
Q Consensus 146 ~~IIs~aSCtT~~Lap~lk~L~~~fgI~~~~~T 178 (218)
.+||. .||.-=-+++-..|.+.+|+..-.+.
T Consensus 173 ~rviG--~gt~LDs~R~r~~lA~~l~v~~~~V~ 203 (350)
T PLN02602 173 NRVIG--SGTNLDSSRFRFLIADHLDVNAQDVQ 203 (350)
T ss_pred HHEEe--ecchHHHHHHHHHHHHHhCCCcccee
Confidence 45663 45555567888888899888754443
No 126
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.82 E-value=0.45 Score=42.23 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=24.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
+||+|+|.|.+|..++..+...+-.+++- .|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L-~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVL-FDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEE-EEC
Confidence 69999999999999988887654225444 455
No 127
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=90.78 E-value=0.34 Score=45.11 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=26.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+|||+|+|.||+.+++.+... ++++++. ||
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~-G~~V~~~-dp 147 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEAL-GIKTLLC-DP 147 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEEE-CC
Confidence 6999999999999999998766 5888765 44
No 128
>PLN02306 hydroxypyruvate reductase
Probab=90.73 E-value=0.35 Score=45.04 Aligned_cols=32 Identities=31% Similarity=0.578 Sum_probs=25.4
Q ss_pred cEEEEEccChhHHHHHHHHH-cCCCceEEEEeCCC
Q 027805 4 VKIGINGFGRIGRLVARVIL-QRDDVELVAVNDPF 37 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~-~~~~~~vvaInd~~ 37 (218)
.+|||+|||+||+.+++.+. .. +++|++. |+.
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~-d~~ 198 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYY-DLY 198 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEE-CCC
Confidence 68999999999999999875 44 5787655 453
No 129
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=90.67 E-value=0.47 Score=41.90 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=29.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
..||+|-|||.+|+..++.+.+. +..||+|+|.
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~e~-GakvvaVsD~ 70 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLEL-GAKVVTLSDS 70 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 36999999999999999988876 6999999994
No 130
>PLN03139 formate dehydrogenase; Provisional
Probab=90.60 E-value=0.33 Score=45.25 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=25.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+|||+|+|+||+.+++.+... +++|.+ .|+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af-G~~V~~-~d~ 230 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF-NCNLLY-HDR 230 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCEEEE-ECC
Confidence 5899999999999999998765 578766 454
No 131
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.50 E-value=0.27 Score=41.91 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=24.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
..||.|+|.|-+|..+++.+... ++.-+.+-|.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~ 60 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDF 60 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeC
Confidence 36899999999999999999765 3443334443
No 132
>PRK14031 glutamate dehydrogenase; Provisional
Probab=90.50 E-value=1.2 Score=42.48 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=29.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.||+|-|||.+|...++.+.+. +..||+|+|.
T Consensus 229 ~rVaVQGfGNVG~~aA~~L~e~-GAkVVaVSD~ 260 (444)
T PRK14031 229 KVCLVSGSGNVAQYTAEKVLEL-GGKVVTMSDS 260 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 6999999999999999998876 6999999993
No 133
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.31 E-value=0.58 Score=42.25 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=25.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
..||+|+|.|.||..++..+...+-..-+.+.|.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~ 36 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDV 36 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 3699999999999999988876654333344454
No 134
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.30 E-value=0.39 Score=38.23 Aligned_cols=79 Identities=23% Similarity=0.230 Sum_probs=45.3
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~-GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
+||+|+|. |.+|..++..+...+-..-+.+.|...+ .+.=...|-.|..+. .+..+.+.. .
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~---~~~g~a~Dl~~~~~~--------------~~~~~~i~~-~ 62 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED---KAEGEALDLSHASAP--------------LPSPVRITS-G 62 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH---HHHHHHHHHHHHHHG--------------STEEEEEEE-S
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc---cceeeehhhhhhhhh--------------ccccccccc-c
Confidence 49999998 9999999998887654333444454211 111111132222211 112334433 4
Q ss_pred CCCCCCccCCCccEEEeeCCcc
Q 027805 83 NPEEIPWAETGAEYVVESTGVF 104 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f 104 (218)
+.+++. ++|+|+-+.|.-
T Consensus 63 ~~~~~~----~aDivvitag~~ 80 (141)
T PF00056_consen 63 DYEALK----DADIVVITAGVP 80 (141)
T ss_dssp SGGGGT----TESEEEETTSTS
T ss_pred cccccc----cccEEEEecccc
Confidence 555554 899999999864
No 135
>PRK08605 D-lactate dehydrogenase; Validated
Probab=90.23 E-value=0.43 Score=43.33 Aligned_cols=32 Identities=38% Similarity=0.641 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
++|||+|+|+||+.+++.+...-+++|.+. |+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~-d~ 178 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAY-DP 178 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEE-CC
Confidence 689999999999999998843225777654 44
No 136
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=89.96 E-value=0.28 Score=41.94 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=26.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
..||.|+|.|-+|..+++.+.... +.-+.+.|+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~ 53 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDD 53 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 369999999999999999998763 545555554
No 137
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=89.91 E-value=1.2 Score=38.43 Aligned_cols=92 Identities=21% Similarity=0.136 Sum_probs=53.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
++++|.|+|.||.-+++.+... +.|++-.+-- +++.++-+.+|- + .. |+- ..+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~a-g~eV~igs~r--~~~~~~a~a~~l---------------~-~~------i~~--~~~ 54 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKA-GHEVIIGSSR--GPKALAAAAAAL---------------G-PL------ITG--GSN 54 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhC-CCeEEEecCC--ChhHHHHHHHhh---------------c-cc------ccc--CCh
Confidence 5999999999999999988766 3666655432 344433332211 1 01 111 111
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCC
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~p 126 (218)
++-. ...|+||-+.+-..-..-.+.+.+.=..|+|||..
T Consensus 55 ~dA~----~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~t 93 (211)
T COG2085 55 EDAA----ALADVVVLAVPFEAIPDVLAELRDALGGKIVIDAT 93 (211)
T ss_pred HHHH----hcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecC
Confidence 2222 25799999999665555455444321257999875
No 138
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.77 E-value=0.83 Score=43.03 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=24.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+|+|.|+|.||+.+++.+.... .+++. .|.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G-a~ViV-~d~ 233 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG-ARVIV-TEV 233 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEE-EEC
Confidence 58999999999999999887664 56555 554
No 139
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.49 E-value=0.54 Score=43.97 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=28.3
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
|.++||+|+|+|.+|..++.++.+. +.++++++
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~-G~~V~~~D 33 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASR-QKQVIGVD 33 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhC-CCEEEEEe
Confidence 6668999999999999999998877 47877774
No 140
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.49 E-value=0.66 Score=41.84 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=24.6
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
||+|+|.|.||..++..+...+-..-+.+-|.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 79999999999999998887654444445555
No 141
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.46 E-value=1 Score=40.81 Aligned_cols=147 Identities=10% Similarity=0.081 Sum_probs=73.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCce-----EEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEE
Q 027805 3 KVKIGINGF-GRIGRLVARVILQRDDVE-----LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV 76 (218)
Q Consensus 3 ~~kvgInG~-GrIGr~~~r~~~~~~~~~-----vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i 76 (218)
..||+|+|. |.||..++..+....-+. -+.+.|...+.+. +.-..-|-.|+.++ +.. .+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~-a~g~a~Dl~~~~~~-------------~~~-~~ 66 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKA-LEGVAMELEDCAFP-------------LLA-EI 66 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccc-cceeehhhhhcccc-------------ccC-ce
Confidence 579999998 999999988887553222 2233343211110 11111233222111 111 13
Q ss_pred EEEeecCCCCCCccCCCccEEEeeCCccc----CHH------------hHHHHHhCC---CCEEEEeCCCCCCCeEEeec
Q 027805 77 TVFGVRNPEEIPWAETGAEYVVESTGVFT----DKD------------KAAAHLKGG---AKKVIISAPSKDAPMFVVGV 137 (218)
Q Consensus 77 ~v~~~~~p~~i~W~~~gvDiVve~tg~f~----~~~------------~a~~h~~~G---akkViis~ps~d~p~~V~gv 137 (218)
++. ..+.+++. ++|+||-+.|.-. ++. .++.-.+.+ +.=+++|+|- |.-+.+.-=
T Consensus 67 ~i~-~~~~~~~~----daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv-D~~t~~~~k 140 (322)
T cd01338 67 VIT-DDPNVAFK----DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC-NTNALIAMK 140 (322)
T ss_pred EEe-cCcHHHhC----CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH-HHHHHHHHH
Confidence 343 34556665 8999999999633 221 111111111 2223445442 321111110
Q ss_pred CccccCCCCCEEEcCChhhhhHHHHHHHHHhhcCeeE
Q 027805 138 NENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174 (218)
Q Consensus 138 N~~~~~~~~~IIs~aSCtT~~Lap~lk~L~~~fgI~~ 174 (218)
..-.+. ..+|+.. |.---+++-..|.+.+|+.-
T Consensus 141 ~sg~~p-~~~ViG~---t~LDs~Rl~~~la~~lgv~~ 173 (322)
T cd01338 141 NAPDIP-PDNFTAM---TRLDHNRAKSQLAKKAGVPV 173 (322)
T ss_pred HcCCCC-hHheEEe---hHHHHHHHHHHHHHHhCcCh
Confidence 000122 3567755 66778888999999999854
No 142
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=89.20 E-value=2.6 Score=32.36 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=53.5
Q ss_pred EEEEEc----cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEe
Q 027805 5 KIGING----FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (218)
Q Consensus 5 kvgInG----~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (218)
+|+|+| -++.|+.+++.+.+. +.+++.||-. ++. +.|.+ .+
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~-G~~v~~Vnp~------------~~~-------------------i~G~~--~y- 46 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAA-GYEVYPVNPK------------GGE-------------------ILGIK--CY- 46 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHT-T-EEEEESTT------------CSE-------------------ETTEE---B-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhC-CCEEEEECCC------------ceE-------------------ECcEE--ee-
Confidence 789999 689999999999884 5889988743 122 11211 11
Q ss_pred ecCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCC
Q 027805 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (218)
Q Consensus 81 ~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~p 126 (218)
.+.+++| ..+|+++-+++.-...+..+...+.|++.|++..+
T Consensus 47 -~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 47 -PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp -SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred -ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 1122222 37899999999888888888788889999988765
No 143
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=89.02 E-value=0.78 Score=41.91 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=25.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
..||.|+|.|.+|..+++.+... ++.-+.|.|.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~ 56 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADR 56 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcC
Confidence 36899999999999999999876 4644455554
No 144
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=88.93 E-value=0.62 Score=43.37 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=25.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+|||+|+|.||+.+++.+... ++++++. ||
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~-G~~V~~~-Dp 147 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGL-GWKVLVC-DP 147 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEE-CC
Confidence 5899999999999999998766 5887765 54
No 145
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.82 E-value=0.46 Score=39.17 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=23.4
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
||.|+|.|-+|..+++.+... ++.-+.+-|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCCeEEEEeC
Confidence 689999999999999998765 3543344443
No 146
>PLN00016 RNA-binding protein; Provisional
Probab=88.79 E-value=1.6 Score=39.76 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=27.5
Q ss_pred ccEEEEE----c-cChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGIN----G-FGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgIn----G-~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
+.||.|. | +|.||+.+++.+.+. +.+|+++.-.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~-G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKA-GHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHC-CCEEEEEecC
Confidence 3689999 7 899999999999877 4788887653
No 147
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.52 E-value=0.82 Score=40.08 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.9
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRD 26 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~ 26 (218)
|..+||+++|+|.+|..+++.+.+.+
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g 26 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHAN 26 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCC
Confidence 65679999999999999999998764
No 148
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.49 E-value=0.85 Score=39.41 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=24.9
Q ss_pred EEEEEccChhHHHHHHHHHcCC-CceEEEEeCC
Q 027805 5 KIGINGFGRIGRLVARVILQRD-DVELVAVNDP 36 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~-~~~vvaInd~ 36 (218)
||||+|+|+||+.+++.+.+.. ..+.+.+.+.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC
Confidence 8999999999999999998653 2344556665
No 149
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=88.36 E-value=0.72 Score=41.25 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=25.9
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
|| +||+|+|.|.+|..++..+.+. +.+|+.+.
T Consensus 1 ~~-mkI~IiG~G~mG~~~A~~L~~~-G~~V~~~~ 32 (341)
T PRK08229 1 MM-ARICVLGAGSIGCYLGGRLAAA-GADVTLIG 32 (341)
T ss_pred CC-ceEEEECCCHHHHHHHHHHHhc-CCcEEEEe
Confidence 54 7999999999999999998876 35666554
No 150
>PLN02712 arogenate dehydrogenase
Probab=88.28 E-value=0.75 Score=45.83 Aligned_cols=32 Identities=31% Similarity=0.665 Sum_probs=26.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
++||||+|+|.||+.+++.+... +.+|++.+.
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~-G~~V~~~dr 400 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQ-GHTVLAYSR 400 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHC-cCEEEEEEC
Confidence 47999999999999999998765 478876654
No 151
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=88.16 E-value=0.67 Score=44.77 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=25.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+|||+|||+||+.+++.+... ++++++.+
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~~d 168 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-GMKVLAYD 168 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEC
Confidence 5899999999999999998765 47877664
No 152
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=87.98 E-value=0.76 Score=40.35 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=24.2
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
||+|+|+|.||..+++.+... +.+|.++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d 30 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVS 30 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEE
Confidence 899999999999999998776 46766553
No 153
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=87.81 E-value=0.71 Score=44.57 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=25.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+|||+|+|+||+.+++.+... +++|++.+
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~~d 170 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAF-GMKVIAYD 170 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEC
Confidence 5899999999999999998765 57877664
No 154
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=87.69 E-value=4.5 Score=34.99 Aligned_cols=137 Identities=15% Similarity=0.228 Sum_probs=71.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCce-EEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~-vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
-+|.|+|.|.+|...++.+... +.+ ++++ +. +.+.+..+.+ +|. + .+++-+.. . .
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~-~~--~~~r~~~a~~----~Ga----------~--~~i~~~~~---~-~ 177 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAA-GAARVVAA-DP--SPDRRELALS----FGA----------T--ALAEPEVL---A-E 177 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEE-CC--CHHHHHHHHH----cCC----------c--EecCchhh---H-H
Confidence 3789999999999988877655 465 6665 43 3333322211 121 0 11221000 0 0
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCccc-cCCCCCEEEcCChhhhhHHH
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENE-YKPELNIVSNASCTTNCLAP 161 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~~-~~~~~~IIs~aSCtT~~Lap 161 (218)
...++. ...++|+||||+|.-.+.+.+-..++.|.+-+++...+...+. .+|... +.++..|+..-..+..-+..
T Consensus 178 ~~~~~~-~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~---~i~~~~~~~~~~~i~g~~~~~~~~~~~ 253 (280)
T TIGR03366 178 RQGGLQ-NGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPV---ALDPEQVVRRWLTIRGVHNYEPRHLDQ 253 (280)
T ss_pred HHHHHh-CCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCce---eeCHHHHHhCCcEEEecCCCCHHHHHH
Confidence 000011 1137899999999766666666777666644444433222221 233332 23344566554445456777
Q ss_pred HHHHHHh
Q 027805 162 LAKVIHD 168 (218)
Q Consensus 162 ~lk~L~~ 168 (218)
+++.|.+
T Consensus 254 ~~~~l~~ 260 (280)
T TIGR03366 254 AVRFLAA 260 (280)
T ss_pred HHHHHHh
Confidence 7777775
No 155
>PRK05442 malate dehydrogenase; Provisional
Probab=87.62 E-value=1.2 Score=40.62 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=74.7
Q ss_pred CC-ccEEEEEcc-ChhHHHHHHHHHcCCCc------eEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEEC
Q 027805 1 MG-KVKIGINGF-GRIGRLVARVILQRDDV------ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG 72 (218)
Q Consensus 1 m~-~~kvgInG~-GrIGr~~~r~~~~~~~~------~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~ 72 (218)
|+ +.||+|+|. |.+|..++..+...+-+ +++ +.|...+.+. +.-...|-.|..++ ..
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~-LiDi~~~~~~-~~g~a~Dl~~~~~~-------------~~ 65 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQ-LLEIPPALKA-LEGVVMELDDCAFP-------------LL 65 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEE-EEecCCcccc-cceeehhhhhhhhh-------------hc
Confidence 53 589999997 99999988877654322 333 3343211110 11111133222111 11
Q ss_pred CEEEEEEeecCCCCCCccCCCccEEEeeCCccc----CHH------------hHHHHHh-C--CCCEEEEeCCCCCCCeE
Q 027805 73 EKPVTVFGVRNPEEIPWAETGAEYVVESTGVFT----DKD------------KAAAHLK-G--GAKKVIISAPSKDAPMF 133 (218)
Q Consensus 73 g~~i~v~~~~~p~~i~W~~~gvDiVve~tg~f~----~~~------------~a~~h~~-~--GakkViis~ps~d~p~~ 133 (218)
. .+++. ..+.+++. ++|+||-+.|.-. ++. .++.-.+ + .+.=+++|+|- |.-+.
T Consensus 66 ~-~~~i~-~~~y~~~~----daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv-Dv~t~ 138 (326)
T PRK05442 66 A-GVVIT-DDPNVAFK----DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA-NTNAL 138 (326)
T ss_pred C-CcEEe-cChHHHhC----CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch-HHHHH
Confidence 1 12332 24445554 8999999999532 221 1111112 1 12224455552 32222
Q ss_pred EeecCccccCCCCCEEEcCChhhhhHHHHHHHHHhhcCeeEEEE
Q 027805 134 VVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177 (218)
Q Consensus 134 V~gvN~~~~~~~~~IIs~aSCtT~~Lap~lk~L~~~fgI~~~~~ 177 (218)
+.-=..-.+ +.++||.. |+-=-+++-..|.+.+++.--.+
T Consensus 139 v~~k~s~g~-p~~rViG~---t~LDs~R~r~~la~~l~v~~~~V 178 (326)
T PRK05442 139 IAMKNAPDL-PAENFTAM---TRLDHNRALSQLAAKAGVPVADI 178 (326)
T ss_pred HHHHHcCCC-CHHHEEee---eHHHHHHHHHHHHHHhCcChHHe
Confidence 211000022 23567754 55667888999999999865443
No 156
>PLN02688 pyrroline-5-carboxylate reductase
Probab=87.54 E-value=1.1 Score=38.72 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=25.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCC---ceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDD---VELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~---~~vvaInd~ 36 (218)
+|||++|+|.+|..+++.+.+... .+++..++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 489999999999999999987642 266665455
No 157
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=87.26 E-value=0.85 Score=38.87 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=27.5
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
|||+|+| .|++|..+++-++.+ +-|++||.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R-GHeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR-GHEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC-CCeeEEEEe
Confidence 4999999 899999999999888 589999864
No 158
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=87.19 E-value=0.91 Score=40.29 Aligned_cols=30 Identities=37% Similarity=0.660 Sum_probs=24.9
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
||||+|+|.+|..+++.+.+. +.+|+. .|.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-g~~v~v-~dr 31 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-GHEVVG-YDR 31 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-CCeEEE-EEC
Confidence 899999999999999999876 467655 454
No 159
>PLN02712 arogenate dehydrogenase
Probab=87.18 E-value=0.89 Score=45.33 Aligned_cols=32 Identities=28% Similarity=0.614 Sum_probs=26.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
++||||+|+|+||+.+++.+... +.+|++++.
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~-G~~V~~~dr 83 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQ-GHTVLAHSR 83 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 47999999999999999998776 478877654
No 160
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=86.99 E-value=0.74 Score=38.76 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=28.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCc-eEEEEeCCCcChhhhh
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMT 44 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~-~vvaInd~~~~~~~~a 44 (218)
..||.|+|.|-+|..+++.+.... + +++.+.+...+.+.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~ 62 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQ 62 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchh
Confidence 368999999999999999998764 5 4444433323344443
No 161
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=86.93 E-value=1 Score=40.07 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=24.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCC-ceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDD-VELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~-~~vvaInd~ 36 (218)
..||+|+|+|.||..+++.+..... .+|+ +.|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~-~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIV-GADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEE-EEEC
Confidence 3699999999999999998876642 2444 4455
No 162
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.89 E-value=0.94 Score=39.27 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=51.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC-CcChhhhhhheee-ccccccccCccEEEeCCceEEECC-EEEEEE
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKY-DSVHGQWKHHELKVKDDKTLLFGE-KPVTVF 79 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~-~~~~~~~ayl~ky-dS~~G~~~~~~v~~~~~~~l~i~g-~~i~v~ 79 (218)
..||.|+|.|-+|..+++++.... +.=+.+.|. ..+++.+..-+-+ .++-|+.. .++-. +. -..+|- -.++..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~K-ae~~~-~~-l~~inP~~~V~~~ 86 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSG-VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPK-VEVMA-ER-IRDINPECEVDAV 86 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEECchhhcchhCcChhhCCCcH-HHHHH-HH-HHHHCCCcEEEEe
Confidence 468999999999999999998764 433334443 2233433332222 34456543 22110 00 001221 122222
Q ss_pred ee-cCCCCCC-ccCCCccEEEeeCCcccCHH
Q 027805 80 GV-RNPEEIP-WAETGAEYVVESTGVFTDKD 108 (218)
Q Consensus 80 ~~-~~p~~i~-W~~~gvDiVve~tg~f~~~~ 108 (218)
.+ -++++++ +-..+.|+||+|+.....+.
T Consensus 87 ~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~ 117 (231)
T cd00755 87 EEFLTPDNSEDLLGGDPDFVVDAIDSIRAKV 117 (231)
T ss_pred eeecCHhHHHHHhcCCCCEEEEcCCCHHHHH
Confidence 21 1111111 11235899999999776553
No 163
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=86.73 E-value=3.2 Score=36.98 Aligned_cols=140 Identities=20% Similarity=0.285 Sum_probs=79.4
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
..|||..| -|.-|+.+.+.+.+.|.+|+..+......-..| + +.++ .++..+ + |..
T Consensus 19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl----~-~ytk-----~eiqy~-~--lst---------- 75 (340)
T KOG4354|consen 19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKL----E-VYTK-----LEIQYA-D--LST---------- 75 (340)
T ss_pred CceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCcc----c-Ccch-----hheeec-c--cch----------
Confidence 37999999 799999999999999999999887542111111 1 1111 122111 1 211
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCC--CC--eEEee---cCcc-ccCCCCCEEEcCC
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--AP--MFVVG---VNEN-EYKPELNIVSNAS 153 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d--~p--~~V~g---vN~~-~~~~~~~IIs~aS 153 (218)
.|...+. ....+|..+.+.+.-.-......-..+--|.++|+-+.+. .| -.+|| .|+. ++. ..+.|+||.
T Consensus 76 ~D~~kle-e~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-na~~iaNPG 153 (340)
T KOG4354|consen 76 VDAVKLE-EPHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-NARLIANPG 153 (340)
T ss_pred hhHHHhh-cCCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-hhhhccCCC
Confidence 1111111 0124566667777554444444333344455677655331 55 66665 5543 343 346899999
Q ss_pred hhhhh----HHHHHHHHH
Q 027805 154 CTTNC----LAPLAKVIH 167 (218)
Q Consensus 154 CtT~~----Lap~lk~L~ 167 (218)
|-.+. |.|++|.+.
T Consensus 154 CYaTgsQl~l~Pllk~i~ 171 (340)
T KOG4354|consen 154 CYATGSQLPLVPLLKAIL 171 (340)
T ss_pred cccccCcccchHHHHHhc
Confidence 96654 677777775
No 164
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=86.70 E-value=0.43 Score=40.35 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=25.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
..||+|+|.|-+|..++..+... ++.-+.+.|.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~ 53 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GIGKLILVDF 53 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECC
Confidence 46899999999999999998776 4644445555
No 165
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.69 E-value=0.98 Score=40.14 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRD 26 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~ 26 (218)
..+|.|+|.|-+|..++.+|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 368999999999999999998663
No 166
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.63 E-value=4.2 Score=36.25 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=50.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCc-eEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~-~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
-+|.|+|.|.+|...++.+... +. +++++. . +.+.+..+.+ +|. + .+++-+.-.+ .+
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~-~--~~~~~~~a~~----lGa----~--------~vi~~~~~~~-~~- 228 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTL-GAAEIVCAD-V--SPRSLSLARE----MGA----D--------KLVNPQNDDL-DH- 228 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEEe-C--CHHHHHHHHH----cCC----c--------EEecCCcccH-HH-
Confidence 3789999999999988877665 45 455443 2 2334333322 221 0 1121100001 00
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEE
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkVii 123 (218)
..+ .. .++|+||||+|.-.+.+.+-..++.|-+-|++
T Consensus 229 -~~~-~~--g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 229 -YKA-EK--GYFDVSFEVSGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred -Hhc-cC--CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 000 01 25899999999755556666777766533333
No 167
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=86.59 E-value=1 Score=37.58 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=22.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
|||+|+|+|.+|...+-.+.+. +.+++++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~-G~~V~g~ 29 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK-GHQVIGV 29 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT-TSEEEEE
T ss_pred CEEEEECCCcchHHHHHHHHhC-CCEEEEE
Confidence 4999999999998887777776 5888887
No 168
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=86.51 E-value=0.84 Score=40.78 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=29.9
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC--------CceEEEEeCC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDP 36 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~--------~~~vvaInd~ 36 (218)
|+++.|+++|+|-+|+.+++.+.... .+.+|+++|.
T Consensus 1 ~k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 1 MKKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred CccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 67899999999999999999875321 3789999986
No 169
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=86.35 E-value=0.55 Score=43.09 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=19.5
Q ss_pred cEEEEEccChhHHHHHHHHHcC
Q 027805 4 VKIGINGFGRIGRLVARVILQR 25 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~ 25 (218)
.+|||+|+|+||+.+++.+-..
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc
Confidence 5999999999999999988654
No 170
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=86.27 E-value=1.4 Score=39.56 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=23.8
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCc-eEEEE
Q 027805 4 VKIGINGF-GRIGRLVARVILQRDDV-ELVAV 33 (218)
Q Consensus 4 ~kvgInG~-GrIGr~~~r~~~~~~~~-~vvaI 33 (218)
+||+|+|. |.+|..++..+...+-. +|+.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lv 32 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLI 32 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEE
Confidence 48999996 99999999988877533 45555
No 171
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=86.26 E-value=0.66 Score=40.35 Aligned_cols=115 Identities=16% Similarity=0.254 Sum_probs=56.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC-CcChhhhhhheee-ccccccccCccEEEeCCceE-EEC-CEEEEE
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKY-DSVHGQWKHHELKVKDDKTL-LFG-EKPVTV 78 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~-~~~~~~~ayl~ky-dS~~G~~~~~~v~~~~~~~l-~i~-g~~i~v 78 (218)
..||.|+|.|-+|..+++.+...+ +.-+.|.|. ..+.+.+..-+-| ++.-|+.. .++- .. .| .+| ...|+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~K-a~~a--~~-~l~~lnp~v~i~~ 106 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPK-VESA--RA-ALARINPHIAIET 106 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChH-HHHH--HH-HHHHHCCCCEEEE
Confidence 369999999999999999998664 433334343 3344444333323 12234332 1110 00 01 112 112222
Q ss_pred Eeec-CCCCCC--ccCCCccEEEeeCCcccCHHhHH-HHHhCCCCEEEEeCC
Q 027805 79 FGVR-NPEEIP--WAETGAEYVVESTGVFTDKDKAA-AHLKGGAKKVIISAP 126 (218)
Q Consensus 79 ~~~~-~p~~i~--W~~~gvDiVve~tg~f~~~~~a~-~h~~~GakkViis~p 126 (218)
..+. ++++++ | .+.|+||+|+..+.++.... ...+.+. -+|++.
T Consensus 107 ~~~~i~~~~~~~~~--~~~DiVi~~~D~~~~r~~ln~~~~~~~i--p~v~~~ 154 (245)
T PRK05690 107 INARLDDDELAALI--AGHDLVLDCTDNVATRNQLNRACFAAKK--PLVSGA 154 (245)
T ss_pred EeccCCHHHHHHHH--hcCCEEEecCCCHHHHHHHHHHHHHhCC--EEEEee
Confidence 2211 121211 3 27899999999887654332 2233444 345554
No 172
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=85.99 E-value=1.2 Score=39.60 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=25.1
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
|||++|+|.+|..+++.+.+. +.+|+. .|.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-g~~v~v-~dr 31 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-GHEVVG-YDV 31 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEE-EEC
Confidence 899999999999999999876 477764 555
No 173
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=85.87 E-value=1.2 Score=39.63 Aligned_cols=30 Identities=30% Similarity=0.616 Sum_probs=24.9
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
||||+|+|++|..+++.+.+. +.+|++ .|.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-g~~V~~-~dr 31 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-GHDCVG-YDH 31 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-CCEEEE-EEC
Confidence 899999999999999998876 477765 454
No 174
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=85.49 E-value=0.85 Score=39.61 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=55.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC-CcChhhhhhheeec-cccccccCccEEEeCCceE-EEC-CEEEEE
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKYD-SVHGQWKHHELKVKDDKTL-LFG-EKPVTV 78 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~-~~~~~~~ayl~kyd-S~~G~~~~~~v~~~~~~~l-~i~-g~~i~v 78 (218)
..||.|+|.|-+|..+++.+.... +.-+.+.|. ..+.+.+..-+-|+ +.-|+.. .++- .. .| .+| .-.|+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~K-a~~a--~~-~l~~inp~v~i~~ 98 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPK-VESA--KD-ALTQINPHIAINP 98 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcH-HHHH--HH-HHHHHCCCcEEEE
Confidence 368999999999999999998763 444444454 22344443333232 2334432 1110 00 01 112 112222
Q ss_pred Eeec-CCCCCCccCCCccEEEeeCCcccCHHhHH-HHHhCCC
Q 027805 79 FGVR-NPEEIPWAETGAEYVVESTGVFTDKDKAA-AHLKGGA 118 (218)
Q Consensus 79 ~~~~-~p~~i~W~~~gvDiVve~tg~f~~~~~a~-~h~~~Ga 118 (218)
..++ +.++++=--.+.|+||+|+..+.++.... ...+.|.
T Consensus 99 ~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~i 140 (240)
T TIGR02355 99 INAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKV 140 (240)
T ss_pred EeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCC
Confidence 2211 11111100127899999999887764333 2334554
No 175
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=85.34 E-value=1.5 Score=38.71 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=23.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
+||+|+|.|.+|..++..+.+. +.++..+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~-g~~V~~~ 30 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARN-GHDVTLW 30 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEE
Confidence 4899999999999999998876 3565444
No 176
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=85.26 E-value=5.4 Score=35.64 Aligned_cols=128 Identities=16% Similarity=0.233 Sum_probs=63.9
Q ss_pred cEEEEEccChhHHHHHHHHHc-CCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~-~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
-+|.|.|.|.||...++.+.. ....+++++. . +.+.+..+.+.+ . ...++ .
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~-~--~~~k~~~a~~~~---------~-------~~~~~---------~ 216 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFG-K--HQEKLDLFSFAD---------E-------TYLID---------D 216 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEe-C--cHhHHHHHhhcC---------c-------eeehh---------h
Confidence 378999999999988776654 3345566553 3 223332221111 0 01111 0
Q ss_pred CCCCCCccCCCccEEEeeCCcc---cCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCcc-ccCCCCCEEEcCChhhhh
Q 027805 83 NPEEIPWAETGAEYVVESTGVF---TDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNASCTTNC 158 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f---~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~-~~~~~~~IIs~aSCtT~~ 158 (218)
..+ +.++|+||||+|.- .+.+.+-..++.|-+=|++..+.... .+|.. .+.++..+......+...
T Consensus 217 ~~~-----~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~-----~~~~~~~~~k~~~i~g~~~~~~~~ 286 (341)
T cd08237 217 IPE-----DLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEYPV-----PINTRMVLEKGLTLVGSSRSTRED 286 (341)
T ss_pred hhh-----ccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeecCCCc-----ccCHHHHhhCceEEEEecccCHHH
Confidence 011 12689999999943 23344555555555334443332211 12221 222344555544444455
Q ss_pred HHHHHHHHHhh
Q 027805 159 LAPLAKVIHDK 169 (218)
Q Consensus 159 Lap~lk~L~~~ 169 (218)
+.-+++.+.+.
T Consensus 287 ~~~~~~~~~~~ 297 (341)
T cd08237 287 FERAVELLSRN 297 (341)
T ss_pred HHHHHHHHHhC
Confidence 66677776644
No 177
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=84.87 E-value=1.6 Score=38.41 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=26.8
Q ss_pred CC-ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 1 m~-~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
|+ ..||||+|.|.+|..+++.+... +.+|+.. |+
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~-G~~V~~~-d~ 35 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAA-GMDVWLL-DS 35 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhc-CCeEEEE-eC
Confidence 54 36899999999999999998876 4676655 44
No 178
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=84.86 E-value=1.5 Score=38.18 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=22.4
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRD 26 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~ 26 (218)
|-.+||+|+|+|.||..+++.+.+.+
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCC
Confidence 54579999999999999999998653
No 179
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.73 E-value=1.7 Score=38.38 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=21.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRD 26 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~ 26 (218)
.+|||++|+|.+|..+++.+.+.+
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g 25 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKN 25 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCC
Confidence 369999999999999999998754
No 180
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=84.73 E-value=5.1 Score=35.29 Aligned_cols=138 Identities=12% Similarity=0.190 Sum_probs=70.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCce-EEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~-vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
-+|.|+|.|.+|...++.+... +.. ++++.. +.+.+..+.+ .|. + ..++-+.-.. .
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~---~~~~~~~~~~----~ga----------~--~~i~~~~~~~-~-- 221 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARAL-GAEDVIGVDP---SPERLELAKA----LGA----------D--FVINSGQDDV-Q-- 221 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEECC---CHHHHHHHHH----hCC----------C--EEEcCCcchH-H--
Confidence 4789999999999988877655 456 776543 2333322211 121 0 1122110000 0
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEEcCChhhhhHHHH
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPL 162 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~~~~~~~~IIs~aSCtT~~Lap~ 162 (218)
...++. ...++|+||||+|.....+.+-..++.+.+-+++..++ + +.+.+ ....+.++..++..-..+..-+..+
T Consensus 222 ~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~-~~~~~--~~~~~~~~~~i~g~~~~~~~~~~~~ 296 (339)
T cd08239 222 EIRELT-SGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGG-E-LTIEV--SNDLIRKQRTLIGSWYFSVPDMEEC 296 (339)
T ss_pred HHHHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCC-C-cccCc--HHHHHhCCCEEEEEecCCHHHHHHH
Confidence 000000 01278999999997655555666777766444443332 2 11111 0122223344555444455667777
Q ss_pred HHHHHhh
Q 027805 163 AKVIHDK 169 (218)
Q Consensus 163 lk~L~~~ 169 (218)
++.+.+.
T Consensus 297 ~~~~~~g 303 (339)
T cd08239 297 AEFLARH 303 (339)
T ss_pred HHHHHcC
Confidence 7777653
No 181
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=84.28 E-value=0.64 Score=42.19 Aligned_cols=31 Identities=32% Similarity=0.363 Sum_probs=24.5
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
||.|+|.|-+|-.+++.+... ++.=+.+.|.
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-GVg~ItlvD~ 31 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-GVRHITFVDS 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCCeEEEECC
Confidence 689999999999999999876 3554555554
No 182
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=84.18 E-value=1.2 Score=39.04 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=24.7
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
||||+|+|.+|..+++.+... +.+|+.. |.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-G~~V~~~-dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-GYQLHVT-TI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-CCeEEEE-cC
Confidence 699999999999999998876 4777654 54
No 183
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=84.06 E-value=1.8 Score=39.26 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=26.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
-.||||+|+|.+|+.+++.+.+.. ++++...++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG-~~Viv~~~~ 35 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSG-LNVIVGLRK 35 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCC-CeEEEEECc
Confidence 368999999999999999998764 666554544
No 184
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.05 E-value=1.9 Score=37.98 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=25.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
..||+|+|.|.+|..++..+... +.+|+.. |.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~-G~~V~l~-d~ 35 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA-GYDVLLN-DV 35 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCeEEEE-eC
Confidence 47899999999999999988876 4666644 44
No 185
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=83.88 E-value=1.7 Score=39.82 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=25.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
.+|||+|+|.+|+.+++++... +++++....
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s-G~~Vvv~~r 48 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS-GVDVVVGLR 48 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC-CCEEEEEEC
Confidence 6899999999999999999876 467765444
No 186
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.74 E-value=1.8 Score=37.87 Aligned_cols=34 Identities=38% Similarity=0.538 Sum_probs=26.6
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
|.+.||+|+|.|.+|..++..+... +.+|+.+ |+
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~-g~~V~~~-d~ 34 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVA-GYDVVMV-DI 34 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHC-CCceEEE-eC
Confidence 4345899999999999999988876 4676655 44
No 187
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=83.72 E-value=1.8 Score=39.25 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=31.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~ 37 (218)
.+++-+.|+|.+|+..+|.+...|.+++|+.-+.+
T Consensus 2 ~~~vvqyGtG~vGv~air~l~akpe~elvgawv~s 36 (350)
T COG3804 2 SLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHS 36 (350)
T ss_pred CceeEEeccchHHHHHHHHHHcCCCCceEEEEecC
Confidence 47999999999999999999999999999997764
No 188
>PRK06046 alanine dehydrogenase; Validated
Probab=83.70 E-value=1.8 Score=39.11 Aligned_cols=34 Identities=29% Similarity=0.252 Sum_probs=30.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~ 37 (218)
.++||+|+|.+|+.+++++...++++.+.|.|+.
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~ 163 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT 163 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC
Confidence 5899999999999999999877789999999983
No 189
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=83.61 E-value=1.7 Score=38.69 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.6
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
|||++|+|++|..+++.+.+.. .++...
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G-~~v~v~ 29 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG-HQLHVT 29 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CeEEEE
Confidence 7999999999999999998764 666533
No 190
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=83.52 E-value=1.8 Score=38.67 Aligned_cols=32 Identities=28% Similarity=0.543 Sum_probs=24.8
Q ss_pred CccEEEEEccChhHHHHHHHHHcCC-CceEEEE
Q 027805 2 GKVKIGINGFGRIGRLVARVILQRD-DVELVAV 33 (218)
Q Consensus 2 ~~~kvgInG~GrIGr~~~r~~~~~~-~~~vvaI 33 (218)
++++|+|+|+|.||+.++|.+.... .+.+.+.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~ 34 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGR 34 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEee
Confidence 3579999999999999999997664 3444444
No 191
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=83.49 E-value=4.1 Score=37.12 Aligned_cols=150 Identities=23% Similarity=0.281 Sum_probs=74.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCc-eEEEEeCCCcC-hhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~-~vvaInd~~~~-~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
+||+|+|.|.||..++..+....-. |++ +-|...+ ++-.+ -|-.|+. .+.+....+...
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~-LiDi~~~~~~G~a----~DL~~~~--------------~~~~~~~~i~~~ 61 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELV-LIDINEEKAEGVA----LDLSHAA--------------APLGSDVKITGD 61 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEE-EEEcccccccchh----cchhhcc--------------hhccCceEEecC
Confidence 4999999999999999888655322 322 3333111 11000 0222222 122223334332
Q ss_pred cCCCCCCccCCCccEEEeeCCccc----CHH------------hHHHHHhCC--CCEEEEeCCCCCCCeEEeecCccccC
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFT----DKD------------KAAAHLKGG--AKKVIISAPSKDAPMFVVGVNENEYK 143 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~----~~~------------~a~~h~~~G--akkViis~ps~d~p~~V~gvN~~~~~ 143 (218)
.+.+++. ++|+||-+.|.-. ++. .++.-.+.+ +.=+|+|+|. |.-+.++--+. .+
T Consensus 62 ~~y~~~~----~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv-D~~ty~~~k~s-g~- 134 (313)
T COG0039 62 GDYEDLK----GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV-DILTYIAMKFS-GF- 134 (313)
T ss_pred CChhhhc----CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH-HHHHHHHHHhc-CC-
Confidence 2334443 8999999998432 221 111111222 2235566664 32111111111 11
Q ss_pred CCCCEEEcCChhhhhHHHHHHHHHhhcCeeEEEEEEEeccC
Q 027805 144 PELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184 (218)
Q Consensus 144 ~~~~IIs~aSCtT~~Lap~lk~L~~~fgI~~~~~Ttvha~t 184 (218)
+..++|. +-|+-=-+++-..|-++|++. ...+|++-
T Consensus 135 p~~rvig--~gt~LDsaR~~~~lae~~~v~---~~~V~~~V 170 (313)
T COG0039 135 PKNRVIG--SGTVLDSARFRTFLAEKLGVS---PKDVHAYV 170 (313)
T ss_pred Cccceec--ccchHHHHHHHHHHHHHhCCC---hhHceeeE
Confidence 3456663 446667788889999999984 24444443
No 192
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=83.19 E-value=4 Score=37.76 Aligned_cols=101 Identities=23% Similarity=0.299 Sum_probs=57.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEE-EEEeec
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV-TVFGVR 82 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i-~v~~~~ 82 (218)
-.|+|.|+|-+|-...+.+.....-.|+|| |+ .++.+....+ .|. +-.+|.+.. .+-+.
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAv-D~--~~~Kl~~A~~----fGA------------T~~vn~~~~~~vv~~- 246 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAV-DI--NPEKLELAKK----FGA------------THFVNPKEVDDVVEA- 246 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCCceEEEE-eC--CHHHHHHHHh----cCC------------ceeecchhhhhHHHH-
Confidence 368999999999998888877666677777 34 3444433322 221 122333222 11000
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCC
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS 127 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps 127 (218)
..++ | +.|+|++|||+|.....+.+-.....+=+-|+|--|.
T Consensus 247 -i~~~-T-~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~ 288 (366)
T COG1062 247 -IVEL-T-DGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAG 288 (366)
T ss_pred -HHHh-c-CCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 1111 1 2389999999998877766544443333345554443
No 193
>PRK08818 prephenate dehydrogenase; Provisional
Probab=83.07 E-value=2 Score=39.89 Aligned_cols=31 Identities=32% Similarity=0.540 Sum_probs=25.3
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCceEEEE
Q 027805 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 3 ~~kvgInG~-GrIGr~~~r~~~~~~~~~vvaI 33 (218)
..||+|+|+ |.||+.+++++.+..+.+|+++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 579999999 9999999999875445666654
No 194
>PRK07877 hypothetical protein; Provisional
Probab=82.98 E-value=0.66 Score=46.67 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=59.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCC-ceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECC-EEEEEEe
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVTVFG 80 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~-~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g-~~i~v~~ 80 (218)
..||+|+|.| +|..++..+....- -+|+-|-.-..+.+++-..+--.+.-|+.+ -+ +...+-..+|- -.|+.+.
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~K-v~--~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNK-AV--VAARRIAELDPYLPVEVFT 182 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHH-HH--HHHHHHHHHCCCCEEEEEe
Confidence 3689999999 99999988876531 144433322234444444321122235433 11 11111113342 3444443
Q ss_pred ec-CCCCCCccCCCccEEEeeCCcccCHHhHH-HHHhCCCCEEEEeCC
Q 027805 81 VR-NPEEIPWAETGAEYVVESTGVFTDKDKAA-AHLKGGAKKVIISAP 126 (218)
Q Consensus 81 ~~-~p~~i~W~~~gvDiVve~tg~f~~~~~a~-~h~~~GakkViis~p 126 (218)
+. ++++++=--.++|+||||+..|.++-... ...+.|. -+|++.
T Consensus 183 ~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~i--P~i~~~ 228 (722)
T PRK07877 183 DGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRI--PVLMAT 228 (722)
T ss_pred ccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEc
Confidence 32 33333200137999999999997764333 2334455 344554
No 195
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.83 E-value=2.2 Score=37.51 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=26.4
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
|...||+|+|.|.+|..++..+... +.+|+.+ |.
T Consensus 1 ~~i~~I~ViGaG~mG~~iA~~la~~-G~~V~l~-d~ 34 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFART-GYDVTIV-DV 34 (291)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhc-CCeEEEE-eC
Confidence 4346899999999999999988876 4676654 44
No 196
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=82.82 E-value=1.9 Score=38.41 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=25.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+++|+|+|++|+.+++.+.... .+|+..+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G-~~V~v~~ 181 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG-ARVFVGA 181 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC-CEEEEEe
Confidence 58999999999999999998764 6766554
No 197
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=82.70 E-value=22 Score=30.89 Aligned_cols=127 Identities=16% Similarity=0.099 Sum_probs=68.5
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (218)
+|.|.|.|.+|+..++.+... +++++++.+.. +....+-+ +|- . ..++.+. .+
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~---~~~~~~~~----~g~-~-----------~~~~~~~-------~~ 222 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQ-GAEVFAFTRSG---EHQELARE----LGA-D-----------WAGDSDD-------LP 222 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEcCCh---HHHHHHHH----hCC-c-----------EEeccCc-------cC
Confidence 788999999999888866554 58888876542 22222211 110 0 1111100 01
Q ss_pred CCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEEcCChhhhhHHHHHH
Q 027805 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAK 164 (218)
Q Consensus 85 ~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~~~~~~~~IIs~aSCtT~~Lap~lk 164 (218)
+.++|+++++++.....+.+..+++.+..-+++. .... -+++++...+.....+...+.-....+..+++
T Consensus 223 ------~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g-~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 292 (329)
T cd08298 223 ------PEPLDAAIIFAPVGALVPAALRAVKKGGRVVLAG-IHMS---DIPAFDYELLWGEKTIRSVANLTRQDGEEFLK 292 (329)
T ss_pred ------CCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEc-CCCC---CCCccchhhhhCceEEEEecCCCHHHHHHHHH
Confidence 2378999999887777788888888776433322 1111 11233333222223344444444556666666
Q ss_pred HHHh
Q 027805 165 VIHD 168 (218)
Q Consensus 165 ~L~~ 168 (218)
.+.+
T Consensus 293 l~~~ 296 (329)
T cd08298 293 LAAE 296 (329)
T ss_pred HHHc
Confidence 6544
No 198
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=82.51 E-value=2.6 Score=33.45 Aligned_cols=108 Identities=22% Similarity=0.302 Sum_probs=58.9
Q ss_pred EEEEc-cChhHHHHHHHHHcCC-CceEEEEeCCCcChhhhhhhee-eccccccccCccEEEeCCc-------eEEECCEE
Q 027805 6 IGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDK-------TLLFGEKP 75 (218)
Q Consensus 6 vgInG-~GrIGr~~~r~~~~~~-~~~vvaInd~~~~~~~~ayl~k-ydS~~G~~~~~~v~~~~~~-------~l~i~g~~ 75 (218)
|.|.| +|-||+..++.+.+.| +|+|+++..-. +.+.+....+ |... -+-..+.. .+.-.+..
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~-n~~~L~~q~~~f~p~-------~v~i~~~~~~~~l~~~~~~~~~~ 72 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGS-NIEKLAEQAREFKPK-------YVVIADEEAYEELKKALPSKGPG 72 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESS-THHHHHHHHHHHT-S-------EEEESSHHHHHHHHHHHHHTTSS
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCC-CHHHHHHHHHHhCCC-------EEEEcCHHHHHHHHHHhhhcCCC
Confidence 67999 9999999999998776 69999998753 6655544432 2110 01110000 00001112
Q ss_pred EEEEeecC-CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEE
Q 027805 76 VTVFGVRN-PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (218)
Q Consensus 76 i~v~~~~~-p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkVii 123 (218)
++++...+ ..++- ...++|+|+.+.-.|...+-.-..+++| |++.+
T Consensus 73 ~~v~~G~~~l~~~~-~~~~~D~vv~Ai~G~aGL~pt~~Ai~~g-k~iaL 119 (129)
T PF02670_consen 73 IEVLSGPEGLEELA-EEPEVDIVVNAIVGFAGLKPTLAAIKAG-KDIAL 119 (129)
T ss_dssp SEEEESHHHHHHHH-THTT-SEEEE--SSGGGHHHHHHHHHTT-SEEEE
T ss_pred CEEEeChHHHHHHh-cCCCCCEEEEeCcccchHHHHHHHHHCC-CeEEE
Confidence 33332211 11110 1137899999988888887666777777 45555
No 199
>PRK07680 late competence protein ComER; Validated
Probab=82.50 E-value=2.6 Score=36.71 Aligned_cols=32 Identities=22% Similarity=0.519 Sum_probs=24.4
Q ss_pred EEEEEccChhHHHHHHHHHcCCCc--eEEEEeCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDV--ELVAVNDP 36 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~--~vvaInd~ 36 (218)
||+|+|+|.+|..+++.+.+...+ +-+.+.+.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r 35 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR 35 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 799999999999999998866422 33455555
No 200
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=82.20 E-value=21 Score=30.00 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=25.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.||-|+|.|.+|...++.+++.+ .+|+.|+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs 40 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG-AHIVVIS 40 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEEc
Confidence 68999999999999999998864 6777665
No 201
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=81.90 E-value=2.5 Score=37.20 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=25.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCC---ceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDD---VELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~---~~vvaInd 35 (218)
.||+|+|+|.+|..+++.+.+.+. .+++.++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 489999999999999999886542 45666554
No 202
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=81.71 E-value=2.4 Score=36.98 Aligned_cols=105 Identities=21% Similarity=0.336 Sum_probs=58.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCc--------Chhhhhhheeecccccc-ccCccEEEeCCceEEECC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI--------TTDYMTYMFKYDSVHGQ-WKHHELKVKDDKTLLFGE 73 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~--------~~~~~ayl~kydS~~G~-~~~~~v~~~~~~~l~i~g 73 (218)
-.+++|-|||.+|+..++.+.+. +..+++|.|... +.+.+..+. +. +|. +. . .+ . -.-++
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~-Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~--~~-~~~~v~-~---~~-~--~~~~~ 100 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAEL-GAKVVAVSDSSGAIYDPDGLDVEELLRIK--EE-RGSRVD-D---YP-L--ESPDG 100 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHT-TEEEEEEEESSEEEEETTEEHHHHHHHHH--HH-HSSHST-T---GT-H--TCSST
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCceEEEcCCCchHHHHHHHH--HH-hCCccc-c---cc-c--ccccc
Confidence 36999999999999999999887 699999977531 222222221 11 111 11 0 00 0 00000
Q ss_pred EEEEEEeecCCCCCCccCCCccEEEeeC-CcccCHHhHHHHHhCCCCEEEEeC
Q 027805 74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVIISA 125 (218)
Q Consensus 74 ~~i~v~~~~~p~~i~W~~~gvDiVve~t-g~f~~~~~a~~h~~~GakkViis~ 125 (218)
.+.+.. .+++ | +..+||.+=|. +.-++.+.++..++.||| +|+-+
T Consensus 101 --~~~~~~--~~~i-l-~~~~DiliP~A~~~~I~~~~~~~~i~~~ak-iIveg 146 (244)
T PF00208_consen 101 --AEYIPN--DDEI-L-SVDCDILIPCALGNVINEDNAPSLIKSGAK-IIVEG 146 (244)
T ss_dssp --SEEECH--HCHG-G-TSSSSEEEEESSSTSBSCHHHCHCHHTT-S-EEEES
T ss_pred --eeEecc--cccc-c-cccccEEEEcCCCCeeCHHHHHHHHhccCc-EEEeC
Confidence 011111 0111 3 35899999886 566777777767787885 45544
No 203
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.69 E-value=2.5 Score=37.77 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=25.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
++||+|+|.|.+|..++..+... +.+|...+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~ 34 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK-GVPVRLWA 34 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-CCeEEEEe
Confidence 36999999999999999998876 45665554
No 204
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=81.46 E-value=2.3 Score=37.78 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.||||+|+|.+|..+++.+.+.. .+|+. .|.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G-~~V~v-~d~ 32 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG-HQLQV-FDV 32 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC-CeEEE-EcC
Confidence 48999999999999999998764 56654 454
No 205
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=81.43 E-value=2.6 Score=37.45 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=29.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCC--CceEEEEeCCCcChhhhh
Q 027805 4 VKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMT 44 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~--~~~vvaInd~~~~~~~~a 44 (218)
+|||++|+|.+|+.+++.+.+.+ ..+-+-|.++ +.+...
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~--~~e~~~ 42 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR--SEEKRA 42 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC--CHHHHH
Confidence 59999999999999999998775 2345556666 444443
No 206
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=81.22 E-value=1.3 Score=44.43 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=75.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhee-------eccccccccCccEEEeCCceEEECCEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK-------YDSVHGQWKHHELKVKDDKTLLFGEKPV 76 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~k-------ydS~~G~~~~~~v~~~~~~~l~i~g~~i 76 (218)
.||+|+|.|.+|+.++..+....+++|+. .|+ +.+.+....+ ..-..|+.. .. +.. -.. ..|
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l-~d~--~~~~l~~~~~~~~~~l~~~~~~~~~~-~~---~~~--~~~--~~i 378 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRI-KDI--NPQGINHALKYSWDLLDKKVKRRHLK-PS---ERD--KQM--ALI 378 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEE-EeC--CHHHHHHHHHHHHHHHHHHHHcCCCC-HH---HHH--HHH--hcE
Confidence 58999999999999998877444577664 455 3333222111 111112211 00 000 001 133
Q ss_pred EEEeecCCCCCCccCCCccEEEeeCCcccCHH-----hHHHHHhCCCCEEEEeCCCC----------CCCeEEeec---C
Q 027805 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKD-----KAAAHLKGGAKKVIISAPSK----------DAPMFVVGV---N 138 (218)
Q Consensus 77 ~v~~~~~p~~i~W~~~gvDiVve~tg~f~~~~-----~a~~h~~~GakkViis~ps~----------d~p~~V~gv---N 138 (218)
++. .+.+.+ .++|+||||...-...+ ....+...++ ++-|+.|. ..|.=+.|. |
T Consensus 379 ~~~--~~~~~~----~~aDlViEav~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la~~~~~p~r~ig~Hff~ 450 (708)
T PRK11154 379 SGT--TDYRGF----KHADVVIEAVFEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIAAAAARPEQVIGLHYFS 450 (708)
T ss_pred EEe--CChHHh----ccCCEEeecccccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHHhcCcccceEEEecCC
Confidence 432 233333 38999999987544432 2234444444 77777663 123222222 2
Q ss_pred ccccCCCCCEEEcCChhhhhHHHHHHHHHhhcCeeE
Q 027805 139 ENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174 (218)
Q Consensus 139 ~~~~~~~~~IIs~aSCtT~~Lap~lk~L~~~fgI~~ 174 (218)
+-.+-+--.||..+...-..+.-+...+. ..|..-
T Consensus 451 P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~-~~gk~p 485 (708)
T PRK11154 451 PVEKMPLVEVIPHAKTSAETIATTVALAK-KQGKTP 485 (708)
T ss_pred ccccCceEEEECCCCCCHHHHHHHHHHHH-HcCCce
Confidence 22221223477776666666666555554 446543
No 207
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.22 E-value=2.4 Score=37.68 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=25.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+||+|+|+|.+|+.+++.+.... .+|...+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G-~~V~~~~ 34 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG-HRVRVWS 34 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC-CEEEEEe
Confidence 369999999999999999998764 5665444
No 208
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=81.21 E-value=2.2 Score=37.03 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=56.3
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCC-CcChhhhhhheeec-cccccccCccEEEeCCceE-EEC-CEEEEEEe
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKYD-SVHGQWKHHELKVKDDKTL-LFG-EKPVTVFG 80 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~-~~~~~~~ayl~kyd-S~~G~~~~~~v~~~~~~~l-~i~-g~~i~v~~ 80 (218)
||.|+|.|-+|..+++.+...+ +.-+.|-|. ..+.+.+.+-|-|. +.-|+.. .++-. . .| .+| +-.|....
T Consensus 1 kVlvvG~GGlG~eilk~La~~G-vg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~K-a~va~--~-~l~~~np~v~i~~~~ 75 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG-FGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK-SEVAA--E-AVNDRNPNCKVVPYQ 75 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcchhhccccCCChhhCChHH-HHHHH--H-HHHHHCCCCEEEEEe
Confidence 6899999999999999997654 433334343 22444443332232 2235443 22110 0 01 111 11222221
Q ss_pred ec-CC-CCCC--ccCCCccEEEeeCCcccCHHhHHH-HHhCCCCEEEEeCCC
Q 027805 81 VR-NP-EEIP--WAETGAEYVVESTGVFTDKDKAAA-HLKGGAKKVIISAPS 127 (218)
Q Consensus 81 ~~-~p-~~i~--W~~~gvDiVve~tg~f~~~~~a~~-h~~~GakkViis~ps 127 (218)
++ ++ .+++ + -.+.|+|++|+..+.++..... -.+.+. -+|++.+
T Consensus 76 ~~i~~~~~~~~~f-~~~~DvVi~a~Dn~~aR~~ln~~c~~~~i--plI~~g~ 124 (234)
T cd01484 76 NKVGPEQDFNDTF-FEQFHIIVNALDNIIARRYVNGMLIFLIV--PLIESGT 124 (234)
T ss_pred ccCChhhhchHHH-HhCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEcc
Confidence 11 01 1111 1 1378999999998876654332 223443 4555554
No 209
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=81.15 E-value=2.1 Score=39.67 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=24.4
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
||+|+|+|.+|..++..+.+. +.+|++++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d 30 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-GHEVTGVD 30 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-CCeEEEEE
Confidence 899999999999999998876 46777663
No 210
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=80.65 E-value=2.9 Score=38.17 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=28.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCc-eEEEEeCCCcChhhhh
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMT 44 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~-~vvaInd~~~~~~~~a 44 (218)
..||.|+|.|.+|..+++.+... ++ +++.|.+-..+.+.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~ 65 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDYVEWSNLQ 65 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCccCHHHcC
Confidence 46899999999999999998876 45 5554443333444443
No 211
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.55 E-value=7.2 Score=37.14 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=24.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.||.|.|+|++|+..++.+... +.++++ .|.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~-G~~v~~-~D~ 43 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF-GARPTV-CDD 43 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEE-EcC
Confidence 5899999999999999877665 466655 664
No 212
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.53 E-value=3 Score=36.89 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.||+|+|.|.+|..++..+... +.+|+.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-GLQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-CCeEEEEE
Confidence 5899999999999999988765 46766553
No 213
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=80.19 E-value=3 Score=34.40 Aligned_cols=150 Identities=16% Similarity=0.247 Sum_probs=67.2
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhh----h---eeeccccccccCccEEEeCCceEEECCEEEE
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTY----M---FKYDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ay----l---~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~ 77 (218)
||+|+|.|.+|+.++..++.. +++|+- .|+ +.+.+.. + ++..--.|.+...... . ..+ .++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l-~d~--~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~---~---~~~--~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-GYEVTL-YDR--SPEALERARKRIERLLDRLVRKGRLSQEEAD---A---ALA--RIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-TSEEEE-E-S--SHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH---H---HHH--TEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCcEEE-EEC--ChHHHHhhhhHHHHHHhhhhhhccchhhhhh---h---hhh--hcc
Confidence 799999999999999888776 576554 454 3332211 1 1111111221100000 0 011 233
Q ss_pred EEeecCCCCCCccCCCccEEEeeCCcccCHHhH-HHHHhC--CCCEEEEeCCCC----------CCC--eEE-eecCccc
Q 027805 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKA-AAHLKG--GAKKVIISAPSK----------DAP--MFV-VGVNENE 141 (218)
Q Consensus 78 v~~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a-~~h~~~--GakkViis~ps~----------d~p--~~V-~gvN~~~ 141 (218)
+ ..+.+++. ++|+|+||...-...++. -..++. ....++.|+.|. ..| .+. --.|+-.
T Consensus 69 ~--~~dl~~~~----~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~ 142 (180)
T PF02737_consen 69 F--TTDLEEAV----DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPH 142 (180)
T ss_dssp E--ESSGGGGC----TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTT
T ss_pred c--ccCHHHHh----hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccc
Confidence 3 23344332 899999999854433221 122222 233488888763 123 222 1233332
Q ss_pred cCCCCCEEEcCChhhhhHHHHHHHHHhhcCee
Q 027805 142 YKPELNIVSNASCTTNCLAPLAKVIHDKFGIV 173 (218)
Q Consensus 142 ~~~~~~IIs~aSCtT~~Lap~lk~L~~~fgI~ 173 (218)
..+--.||..+...-..+.-+...+.+. |-.
T Consensus 143 ~~~lVEvv~~~~T~~~~~~~~~~~~~~~-gk~ 173 (180)
T PF02737_consen 143 LMPLVEVVPGPKTSPETVDRVRALLRSL-GKT 173 (180)
T ss_dssp T--EEEEEE-TTS-HHHHHHHHHHHHHT-T-E
T ss_pred cCceEEEeCCCCCCHHHHHHHHHHHHHC-CCE
Confidence 2222358888886666666666655543 543
No 214
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=80.18 E-value=3.1 Score=37.08 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=24.0
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 2 ~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
..+||+|+|.|.||..++..+.+.. .+++.+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~ 34 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAG-FDVHFL 34 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCC-CeEEEE
Confidence 4579999999999999998887653 444444
No 215
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=80.13 E-value=1.9 Score=38.33 Aligned_cols=42 Identities=24% Similarity=0.420 Sum_probs=30.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheee
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKY 49 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~ky 49 (218)
+++|++|+||+|..+.+.+.+.. -++|+- |. +.+.+..+-+|
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g-hdvV~y-D~--n~~av~~~~~~ 42 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG-HDVVGY-DV--NQTAVEELKDE 42 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC-CeEEEE-cC--CHHHHHHHHhc
Confidence 48999999999999999998873 666653 44 44455455443
No 216
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=80.07 E-value=18 Score=32.17 Aligned_cols=138 Identities=14% Similarity=0.173 Sum_probs=69.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEE---EEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT---VFG 80 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~---v~~ 80 (218)
-+|.|.|.|.+|...++.+... +.+++++.. +.+.+..+.+ .|. . ..++-+... +..
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~---~~~~~~~~~~----~Ga-~-----------~~i~~~~~~~~~~~~ 227 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDI---DPEKLEMMKG----FGA-D-----------LTLNPKDKSAREVKK 227 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEcC---CHHHHHHHHH----hCC-c-----------eEecCccccHHHHHH
Confidence 4789999999999988887766 467776643 3344433321 121 0 112110000 000
Q ss_pred ecCCCCCCccCCCc----cEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCcc-ccCCCCCEEEcCChh
Q 027805 81 VRNPEEIPWAETGA----EYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNASCT 155 (218)
Q Consensus 81 ~~~p~~i~W~~~gv----DiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~-~~~~~~~IIs~aSCt 155 (218)
. ..++ .+..|+ |+|+||+|.-...+.+-..++.|-+-+++..++... .++.. .+..+..++.+-.++
T Consensus 228 ~--~~~~-t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~-----~~~~~~~~~~~~~~~g~~~~~ 299 (349)
T TIGR03201 228 L--IKAF-AKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKT-----EYRLSNLMAFHARALGNWGCP 299 (349)
T ss_pred H--HHhh-cccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCCc-----ccCHHHHhhcccEEEEEecCC
Confidence 0 0000 011245 489999997666666666777775333333332211 11211 222233456555556
Q ss_pred hhhHHHHHHHHHhh
Q 027805 156 TNCLAPLAKVIHDK 169 (218)
Q Consensus 156 T~~Lap~lk~L~~~ 169 (218)
...+..+++.|.+.
T Consensus 300 ~~~~~~~~~~i~~g 313 (349)
T TIGR03201 300 PDRYPAALDLVLDG 313 (349)
T ss_pred HHHHHHHHHHHHcC
Confidence 66677777777643
No 217
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=80.07 E-value=1.6 Score=39.98 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=56.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC-CcChhhhhhheeec-cccccccCccEEEeCCceE-EECC-EEEEE
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKYD-SVHGQWKHHELKVKDDKTL-LFGE-KPVTV 78 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~-~~~~~~~ayl~kyd-S~~G~~~~~~v~~~~~~~l-~i~g-~~i~v 78 (218)
..||.|+|.|-+|..+++.+... ++.-+.|.|. ..+.+.+..-+-|+ ..-|+.. .++- .. .| .+|- -.++.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~-Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~K-a~~a--~~-~l~~~np~v~v~~ 102 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGA-GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPK-AESA--RE-AMLALNPDVKVTV 102 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCEEcccccccCcccChhHCCChH-HHHH--HH-HHHHHCCCcEEEE
Confidence 36999999999999999998765 3544445454 22333333322221 1123322 1100 00 01 1221 12222
Q ss_pred Eee-cCCCCC-CccCCCccEEEeeCCcccCHHhHH-HHHhCCCCEEEEeCC
Q 027805 79 FGV-RNPEEI-PWAETGAEYVVESTGVFTDKDKAA-AHLKGGAKKVIISAP 126 (218)
Q Consensus 79 ~~~-~~p~~i-~W~~~gvDiVve~tg~f~~~~~a~-~h~~~GakkViis~p 126 (218)
+.+ -++++. ++ -.+.|+||+|+..+.++.... ...+.+.+ +|.+.
T Consensus 103 ~~~~i~~~~~~~~-~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip--~v~~~ 150 (355)
T PRK05597 103 SVRRLTWSNALDE-LRDADVILDGSDNFDTRHLASWAAARLGIP--HVWAS 150 (355)
T ss_pred EEeecCHHHHHHH-HhCCCEEEECCCCHHHHHHHHHHHHHcCCC--EEEEE
Confidence 211 112110 11 137899999999887765332 33344553 44443
No 218
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=79.92 E-value=2.8 Score=40.33 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=24.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
.+|+|+|+|+||+.+++.+... +++|+..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~-Ga~ViV~ 283 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGF-GARVVVT 283 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEE
Confidence 5899999999999999998766 4676554
No 219
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=79.75 E-value=1.3 Score=40.90 Aligned_cols=112 Identities=17% Similarity=0.198 Sum_probs=55.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCc-eEEEEeCCCcChhhhhhheeec-cccccccCccEEEeCCceE-EECC-EEEEE
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYD-SVHGQWKHHELKVKDDKTL-LFGE-KPVTV 78 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~-~vvaInd~~~~~~~~ayl~kyd-S~~G~~~~~~v~~~~~~~l-~i~g-~~i~v 78 (218)
..||.|+|.|-+|..+++.+...+ + +++-+.+-..+++.+..-+-|+ +.-|+.. .++- .. .| .+|. -.|+.
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~G-vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~K-a~~~--~~-~l~~~np~v~i~~ 115 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAG-VGTITLIDDDTVDVSNIHRQILFGASDVGRPK-VEVA--AE-RLKEIQPDIRVNA 115 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCEEccccccccccCChhHCCCHH-HHHH--HH-HHHHHCCCCeeEE
Confidence 368999999999999999998764 4 4444433333444444333232 1124322 1100 00 01 1221 12222
Q ss_pred Eee-cCCCCCCccCCCccEEEeeCCcccCHHhHH-HHHhCCCC
Q 027805 79 FGV-RNPEEIPWAETGAEYVVESTGVFTDKDKAA-AHLKGGAK 119 (218)
Q Consensus 79 ~~~-~~p~~i~W~~~gvDiVve~tg~f~~~~~a~-~h~~~Gak 119 (218)
... -+++++.---.+.|+||+|+..+.++.... ...+.|..
T Consensus 116 ~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP 158 (370)
T PRK05600 116 LRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTP 158 (370)
T ss_pred eeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 111 112221111137899999999988764332 23345553
No 220
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=79.37 E-value=5 Score=31.29 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=25.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
..+|+|+|.|.+|+.+++.+.... .+.+.+.|.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r 51 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-AAKIVIVNR 51 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcC
Confidence 368999999999999999998764 444555554
No 221
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=78.75 E-value=4.3 Score=30.14 Aligned_cols=29 Identities=31% Similarity=0.685 Sum_probs=23.3
Q ss_pred EEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 6 IGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 6 vgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
|-|.|+|++|+.+++.+.+ .+.+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEEC
Confidence 4689999999999999988 4577887765
No 222
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=78.63 E-value=10 Score=34.71 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=33.2
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeec
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYD 50 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kyd 50 (218)
..+|-|-| .|.||..+++.|+.+++--.-.|-|+. +.+...||.+.+
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~-~~k~~~~L~~l~ 53 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPE-DEKKTEHLRKLE 53 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcc-hhhhHHHHHhcc
Confidence 36999999 899999999999999654334455553 554544565444
No 223
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=78.63 E-value=3 Score=38.71 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=22.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
..+||+||||||+.+++.+... ++.++.-
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~-gm~vI~~ 175 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAM-GMHVIGY 175 (406)
T ss_pred cEEEEeecccchHHHHHHHHhc-CceEEee
Confidence 4789999999999999987654 3555544
No 224
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=78.57 E-value=4.3 Score=32.49 Aligned_cols=100 Identities=19% Similarity=0.282 Sum_probs=52.0
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (218)
||+|+|.|..|..++..+.++. .+ |-+-.. +.+.+..+-+... .-++. ..++... .+.+ ..|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~-V~l~~~--~~~~~~~i~~~~~-n~~~~-~~~~l~~---------~i~~--t~dl 63 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HE-VTLWGR--DEEQIEEINETRQ-NPKYL-PGIKLPE---------NIKA--TTDL 63 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EE-EEEETS--CHHHHHHHHHHTS-ETTTS-TTSBEET---------TEEE--ESSH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CE-EEEEec--cHHHHHHHHHhCC-CCCCC-CCcccCc---------cccc--ccCH
Confidence 7999999999999998888775 33 334443 3444434322111 00111 1111111 2333 2444
Q ss_pred CCCCccCCCccEEEeeCCcccCHHhHH---HHHhCCCCEEEEeCC
Q 027805 85 EEIPWAETGAEYVVESTGVFTDKDKAA---AHLKGGAKKVIISAP 126 (218)
Q Consensus 85 ~~i~W~~~gvDiVve~tg~f~~~~~a~---~h~~~GakkViis~p 126 (218)
++.- .+.|+++-+++.+.-++... .|++.+. .||+.+
T Consensus 64 ~~a~---~~ad~IiiavPs~~~~~~~~~l~~~l~~~~--~ii~~~ 103 (157)
T PF01210_consen 64 EEAL---EDADIIIIAVPSQAHREVLEQLAPYLKKGQ--IIISAT 103 (157)
T ss_dssp HHHH---TT-SEEEE-S-GGGHHHHHHHHTTTSHTT---EEEETS
T ss_pred HHHh---CcccEEEecccHHHHHHHHHHHhhccCCCC--EEEEec
Confidence 3311 27899999999887665443 4444554 666665
No 225
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=78.41 E-value=3.9 Score=32.58 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=26.4
Q ss_pred EEEEc-cChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 6 IGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 6 vgInG-~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
|.|.| .|.+|+.+++.+++++ .+|+++.-.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecC
Confidence 67899 8999999999999886 899998764
No 226
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=78.17 E-value=4.3 Score=36.62 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=25.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.||+|+|.|.+|..++..+...+-+.-+.+.|.
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 799999999999999998887764433444454
No 227
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=78.11 E-value=2.9 Score=40.03 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=25.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+|||+|+|.+|..+++++.+.. .+|++ .|.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G-~~V~v-~dr 32 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG-FKISV-YNR 32 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC-CeEEE-EeC
Confidence 48999999999999999998874 66554 444
No 228
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=78.06 E-value=3.6 Score=39.36 Aligned_cols=32 Identities=31% Similarity=0.315 Sum_probs=25.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+||||+|.|.||..++..++.. +++|+ +.|+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~-G~~V~-v~D~ 35 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA-GIDVA-VFDP 35 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC-CCeEE-EEeC
Confidence 35899999999999999998876 46665 4555
No 229
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=77.68 E-value=20 Score=31.13 Aligned_cols=84 Identities=21% Similarity=0.304 Sum_probs=50.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
-+|.|+|.|.+|+..++.+... +++++++.. +.+...++.+ +|. + ..++-+.
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~---~~~~~~~~~~----~g~----~--------~~~~~~~-------- 208 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALT-GPDVVLVGR---HSEKLALARR----LGV----E--------TVLPDEA-------- 208 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEcC---CHHHHHHHHH----cCC----c--------EEeCccc--------
Confidence 3788999999999988877665 577777654 2344433322 221 0 0111000
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCC
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~Gak 119 (218)
. .++ .++|+++||+|.-...+.+..+++.+.+
T Consensus 209 ~--~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~ 240 (319)
T cd08242 209 E--SEG--GGFDVVVEATGSPSGLELALRLVRPRGT 240 (319)
T ss_pred c--ccC--CCCCEEEECCCChHHHHHHHHHhhcCCE
Confidence 0 122 3799999999875555666677776653
No 230
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=77.38 E-value=3.7 Score=36.53 Aligned_cols=31 Identities=32% Similarity=0.309 Sum_probs=25.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
+||+|+|.|.+|..+++.+... +.+|+.. |.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-G~~V~v~-d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-GHEVRLW-DA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-CCeeEEE-eC
Confidence 4899999999999999998876 4666655 44
No 231
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=77.26 E-value=15 Score=33.82 Aligned_cols=136 Identities=15% Similarity=0.247 Sum_probs=80.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
-+|+|.|+|=+|...++.+.... .+++++.-. .+.+....+ .| . ...++.+ +
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~---~~K~e~a~~----lG----------A--d~~i~~~--------~ 219 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRS---EEKLELAKK----LG----------A--DHVINSS--------D 219 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCC---hHHHHHHHH----hC----------C--cEEEEcC--------C
Confidence 58999999999988888776664 899998653 232211111 11 0 1333321 1
Q ss_pred CCCCC-ccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCC-CCCCeEEeecCcc-ccCCCCCEEEcCChhhhhHH
Q 027805 84 PEEIP-WAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVNEN-EYKPELNIVSNASCTTNCLA 160 (218)
Q Consensus 84 p~~i~-W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps-~d~p~~V~gvN~~-~~~~~~~IIs~aSCtT~~La 160 (218)
++.++ ..+ .+|+++++.+ ..+.+.+-..++.|-+-|++-.|. .+.|.+ +.- ..-+...|+.+..-|-.=+.
T Consensus 220 ~~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~----~~~~li~~~~~i~GS~~g~~~d~~ 293 (339)
T COG1064 220 SDALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLL----PAFLLILKEISIVGSLVGTRADLE 293 (339)
T ss_pred chhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccCCC----CHHHhhhcCeEEEEEecCCHHHHH
Confidence 11111 111 2899999999 888888888888777667776663 222211 111 11124467777777777777
Q ss_pred HHHHHHHhhcCeeE
Q 027805 161 PLAKVIHDKFGIVE 174 (218)
Q Consensus 161 p~lk~L~~~fgI~~ 174 (218)
-+++...+. +|+-
T Consensus 294 e~l~f~~~g-~Ikp 306 (339)
T COG1064 294 EALDFAAEG-KIKP 306 (339)
T ss_pred HHHHHHHhC-Ccee
Confidence 777776554 5553
No 232
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=77.25 E-value=6.3 Score=35.55 Aligned_cols=99 Identities=17% Similarity=0.259 Sum_probs=52.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCc-eEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~-~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
-+|.|+|.|.+|...++.+... +. +++++. . +.+.+..+.+ +|- + .+++-+.-....
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~-~--~~~r~~~a~~----~Ga----------~--~~i~~~~~~~~~-- 250 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAA-GASQVVAVD-L--NEDKLALARE----LGA----------T--ATVNAGDPNAVE-- 250 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCcEEEEc-C--CHHHHHHHHH----cCC----------c--eEeCCCchhHHH--
Confidence 3789999999999888877655 45 466553 2 3344333321 221 0 112110000000
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCC
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~p 126 (218)
...++. ..++|+||||+|.-.+.+.+-..++.|-+-|++..+
T Consensus 251 ~i~~~~--~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 251 QVRELT--GGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred HHHHHh--CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccC
Confidence 000111 127899999999755666666677666644444433
No 233
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.06 E-value=4.5 Score=35.54 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=24.5
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
|...||+|+|.|.+|..++..+... +.+|+.+
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~-G~~V~l~ 32 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFH-GFDVTIY 32 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhc-CCeEEEE
Confidence 4346999999999999999888765 4555544
No 234
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.89 E-value=7.2 Score=35.40 Aligned_cols=144 Identities=13% Similarity=0.118 Sum_probs=71.6
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCce-----EEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEE
Q 027805 4 VKIGINGF-GRIGRLVARVILQRDDVE-----LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (218)
Q Consensus 4 ~kvgInG~-GrIGr~~~r~~~~~~~~~-----vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~ 77 (218)
+||+|+|. |.||..++..+...+-+. -+.+.|.... ...+.-...|-.|..++ ...+ .+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~-~~~~~g~~~Dl~d~~~~------------~~~~--~~ 65 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPA-MKALEGVVMELQDCAFP------------LLKG--VV 65 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCc-cCccceeeeehhhhccc------------ccCC--cE
Confidence 48999997 999999999887654222 1333344211 01112222233222111 0111 23
Q ss_pred EEeecCCCCCCccCCCccEEEeeCCccc----CHH------------hHHHHHhC---CCCEEEEeCCCCCCCeEEeecC
Q 027805 78 VFGVRNPEEIPWAETGAEYVVESTGVFT----DKD------------KAAAHLKG---GAKKVIISAPSKDAPMFVVGVN 138 (218)
Q Consensus 78 v~~~~~p~~i~W~~~gvDiVve~tg~f~----~~~------------~a~~h~~~---GakkViis~ps~d~p~~V~gvN 138 (218)
+. ..+.+.+. ++|+||-+.|.-. ++. .++.-.+. .+.-+++|+|- |.-+.+.
T Consensus 66 i~-~~~~~~~~----~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv-D~~t~~~--- 136 (323)
T cd00704 66 IT-TDPEEAFK----DVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA-NTNALIA--- 136 (323)
T ss_pred Ee-cChHHHhC----CCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH-HHHHHHH---
Confidence 32 23344554 8999999998532 221 11111122 12234455553 3111111
Q ss_pred ccccC--CCCCEEEcCChhhhhHHHHHHHHHhhcCeeE
Q 027805 139 ENEYK--PELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174 (218)
Q Consensus 139 ~~~~~--~~~~IIs~aSCtT~~Lap~lk~L~~~fgI~~ 174 (218)
.+.-. +.++||+ . |+-=-+++-..|.+.+++.-
T Consensus 137 ~k~sg~~p~~~vig--~-t~LDs~R~r~~la~~l~v~~ 171 (323)
T cd00704 137 LKNAPNLPPKNFTA--L-TRLDHNRAKAQVARKLGVRV 171 (323)
T ss_pred HHHcCCCCHHHEEE--e-eHHHHHHHHHHHHHHhCcCH
Confidence 11111 3457883 3 66667888888999999764
No 235
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=76.86 E-value=3.2 Score=38.60 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=27.2
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhe
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMF 47 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~ 47 (218)
||+|+|+|.+|..++..+ .. +.+|+++.- +.+.+..+.
T Consensus 2 kI~VIGlGyvGl~~A~~l-A~-G~~VigvD~---d~~kv~~l~ 39 (388)
T PRK15057 2 KITISGTGYVGLSNGLLI-AQ-NHEVVALDI---LPSRVAMLN 39 (388)
T ss_pred EEEEECCCHHHHHHHHHH-Hh-CCcEEEEEC---CHHHHHHHH
Confidence 899999999999998544 44 578777653 455554443
No 236
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=76.79 E-value=14 Score=35.23 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=54.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
+||.|.|+|+-|+..++.+.+.. .+++ ++|....++.. . ... ..+.+ |++...+.
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G-~~v~-v~D~~~~~~~~--~-----~~~-------~~~~~---------i~~~~g~~ 62 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLG-AEVT-VSDDRPAPEGL--A-----AQP-------LLLEG---------IEVELGSH 62 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCC-CeEE-EEcCCCCccch--h-----hhh-------hhccC---------ceeecCcc
Confidence 69999999999999999988774 5555 44542222110 0 000 00011 11111122
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCC
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~Gak 119 (218)
+. ..|. ..|+|+-+-|...+.+......++|++
T Consensus 63 ~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 63 DD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred ch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 22 3343 789999999988888888888888884
No 237
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=76.69 E-value=5.5 Score=36.22 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.7
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCC
Q 027805 3 KVKIGINGF-GRIGRLVARVILQRD 26 (218)
Q Consensus 3 ~~kvgInG~-GrIGr~~~r~~~~~~ 26 (218)
.+||+|+|. |.+|..++..+...+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCC
Confidence 579999997 999999988887654
No 238
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=76.59 E-value=4.6 Score=37.88 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=32.7
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCC-CceEEEEeCCCcChhhhhhh
Q 027805 4 VKIGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYM 46 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~-~~~vvaInd~~~~~~~~ayl 46 (218)
.||.|.| +|-||...++.+...| +++|+++..-. +.+.+...
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~-n~~~L~~q 45 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGK-NVALMVEQ 45 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCC-CHHHHHHH
Confidence 5999999 9999999999887654 59999998753 55544433
No 239
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=76.47 E-value=2.6 Score=42.34 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.||+|+|.|.+|.-++..+... +++|+- .|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l-~d~ 344 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK-GTPIVM-KDI 344 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC-CCeEEE-EeC
Confidence 4899999999999999888766 576654 454
No 240
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=76.35 E-value=4.6 Score=35.96 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=26.8
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
+||-|-| .|.||+.+++.+++..+.+|++++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 4899999 799999999999876567888885
No 241
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=76.28 E-value=4.1 Score=36.52 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=24.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
..+|+|+|+|.||+.+++.+... +..-+.+.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~-g~~~V~v~~r 210 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAK-GVAEITIANR 210 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHc-CCCEEEEEeC
Confidence 36999999999999999998764 3444445554
No 242
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.01 E-value=4.4 Score=37.61 Aligned_cols=34 Identities=29% Similarity=0.541 Sum_probs=26.8
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
|+..||.|+|+|.+|..+++.+.+.+ .+|++ .|.
T Consensus 1 ~~~~~i~iiGlG~~G~slA~~l~~~G-~~V~g-~D~ 34 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSIARFLAQKG-VYVIG-VDK 34 (418)
T ss_pred CCCCeEEEEEECHHHHHHHHHHHHCC-CEEEE-EeC
Confidence 66679999999999999999888764 56554 443
No 243
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=75.50 E-value=3 Score=41.83 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=24.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.||+|+|.|.+|+-++..+... +++|+- .|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l-~d~ 344 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-GVPVIM-KDI 344 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-CCeEEE-EeC
Confidence 4899999999999999887766 466554 444
No 244
>PLN02494 adenosylhomocysteinase
Probab=75.25 E-value=4.5 Score=38.93 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=24.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+|+|.|+|.||+.+++.+... +++|+++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~-Ga~VIV~e 284 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA-GARVIVTE 284 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 5899999999999999998766 46766653
No 245
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=75.20 E-value=2.2 Score=42.44 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=25.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
..||.|+|.|-+|-.+++.+...+ +.=+.+.|.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~G-Vg~ItlVD~ 370 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWG-VRHITFVDN 370 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcC-CCeEEEEcC
Confidence 369999999999999999998764 444444443
No 246
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=75.15 E-value=42 Score=27.05 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=25.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.||-|+|-|.+|...++.+++. +.+++.|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~-ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT-GAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEc
Confidence 6899999999999999998876 46666663
No 247
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=74.92 E-value=1.8 Score=43.61 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=24.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.||+|+|.|.+|.-++..+... +++|+- .|.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~-G~~V~l-~d~ 366 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK-GLKTVL-KDA 366 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC-CCcEEE-ecC
Confidence 5899999999999999887766 577664 455
No 248
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=74.89 E-value=4.5 Score=38.11 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=24.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
.+|+|+|+|.||+.+++.+... +.+|+++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~-Ga~ViV~ 224 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM-GARVIVT 224 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-cCEEEEE
Confidence 5899999999999999988765 4776665
No 249
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=74.87 E-value=5.5 Score=33.60 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=23.1
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEE
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
|||+|+| +|.+|..+++.+.+.. .+|+..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~ 30 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIG 30 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEE
Confidence 3899997 9999999999998764 555544
No 250
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.87 E-value=22 Score=33.37 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=24.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+|.|+|.|.+|...++.+.+. +.+++.+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~-G~~V~~~d 46 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL-GARVTVVD 46 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 5899999999999999888776 47766553
No 251
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=74.79 E-value=13 Score=36.17 Aligned_cols=31 Identities=19% Similarity=0.077 Sum_probs=24.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
-||.|+|.|.+|...++.+.... .+ |-+.|.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lG-A~-V~a~D~ 196 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLG-AI-VRAFDT 196 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CE-EEEEeC
Confidence 69999999999999988887664 55 445565
No 252
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=74.78 E-value=5 Score=35.82 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.|++|+|+|++|+.+++.+.... .+++.++
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~ 182 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALG-ANVTVGA 182 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 69999999999999999988764 6666554
No 253
>PRK06444 prephenate dehydrogenase; Provisional
Probab=74.78 E-value=4.7 Score=34.12 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=24.5
Q ss_pred cEEEEEc-cChhHHHHHHHHHcC------CCceEEEEeCC
Q 027805 4 VKIGING-FGRIGRLVARVILQR------DDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~------~~~~vvaInd~ 36 (218)
+||+|+| .|++|+.+.+.+.+. .+.++|-++-|
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~~~~DlVilavP 40 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYIKKADHAFLSVP 40 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEECCCCEEEEeCC
Confidence 4899999 799999998877643 34566666655
No 254
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=74.57 E-value=4.4 Score=37.41 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=23.5
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEE
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
.||+|+| +|.||+.+++++.... .+|...
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~ 128 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSG-YQVRIL 128 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCC-CeEEEe
Confidence 6999999 9999999999998763 554444
No 255
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.26 E-value=4.8 Score=35.33 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=24.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.||+|+|.|.+|+.++..+... +.+|+.+ |.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-G~~V~~~-d~ 32 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-GFQTTLV-DI 32 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-CCcEEEE-eC
Confidence 4899999999999999988866 4566544 44
No 256
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=74.18 E-value=6.5 Score=30.44 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=52.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeecc-ccccccCccEEEeCCceE-EEC-CEEEEEE
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDS-VHGQWKHHELKVKDDKTL-LFG-EKPVTVF 79 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS-~~G~~~~~~v~~~~~~~l-~i~-g~~i~v~ 79 (218)
..||.|+|.|.+|..+++++...+=-+++-+-+-..+++.+.+-+-|.+ .-|+.. .++ . .. .| .+| +-.++.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~K-a~~-~-~~-~l~~~np~~~v~~~ 77 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNK-AEA-A-KE-RLQEINPDVEVEAI 77 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBH-HHH-H-HH-HHHHHSTTSEEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHH-HHH-H-HH-HHHHhcCceeeeee
Confidence 3699999999999999999986642244444333345555555322222 235432 110 0 00 01 122 2233333
Q ss_pred eecC-CCCCCccC-CCccEEEeeCCcccCHHhHHH
Q 027805 80 GVRN-PEEIPWAE-TGAEYVVESTGVFTDKDKAAA 112 (218)
Q Consensus 80 ~~~~-p~~i~W~~-~gvDiVve~tg~f~~~~~a~~ 112 (218)
...- .+++ +.. .+.|+||+|+..+..+.....
T Consensus 78 ~~~~~~~~~-~~~~~~~d~vi~~~d~~~~~~~l~~ 111 (135)
T PF00899_consen 78 PEKIDEENI-EELLKDYDIVIDCVDSLAARLLLNE 111 (135)
T ss_dssp ESHCSHHHH-HHHHHTSSEEEEESSSHHHHHHHHH
T ss_pred ecccccccc-cccccCCCEEEEecCCHHHHHHHHH
Confidence 2211 1111 111 278999999998666544443
No 257
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=74.16 E-value=16 Score=32.98 Aligned_cols=31 Identities=13% Similarity=0.459 Sum_probs=23.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
-+|.|.|.|.+|...++.+... +.+++++..
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~ 215 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAF-GLKVTVISS 215 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 3788999999999988877655 467776644
No 258
>PLN02427 UDP-apiose/xylose synthase
Probab=74.01 E-value=5.6 Score=36.11 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=28.1
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
.+||-|.| .|.||+.+++.+.+..+.+|+++..
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 36899999 8999999999999875578888853
No 259
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=73.99 E-value=5 Score=35.92 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=25.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
|||+|+|.|.+|..++..+...+-..-+.+.|.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 389999999999999998887653344445554
No 260
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=73.89 E-value=3.4 Score=39.81 Aligned_cols=127 Identities=15% Similarity=0.307 Sum_probs=66.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhee-ecccccc-----ccC-cc-EEE-e-CCceEEE--
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK-YDSVHGQ-----WKH-HE-LKV-K-DDKTLLF-- 71 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~k-ydS~~G~-----~~~-~~-v~~-~-~~~~l~i-- 71 (218)
.+||++|+|.+|+.+++++.+. +++|+.- |. +.+...-+.+ ... .|. ... .+ +.. + .+ +++
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~-G~~V~V~-NR--t~~k~~~l~~~~~~-~Ga~~~~~a~s~~e~v~~l~~~d--vIi~~ 79 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEK-GFPISVY-NR--TTSKVDETVERAKK-EGNLPLYGFKDPEDFVLSIQKPR--SVIIL 79 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhC-CCeEEEE-CC--CHHHHHHHHHhhhh-cCCcccccCCCHHHHHhcCCCCC--EEEEE
Confidence 6899999999999999999987 4776644 44 3332222211 000 010 000 01 100 0 11 111
Q ss_pred --CCEEEE-EEeecCCCCCCccCCCccEEEeeCCcc--cCHHhHHHHHhCCCCEEEEeCC-C------CCCCeEEeecCc
Q 027805 72 --GEKPVT-VFGVRNPEEIPWAETGAEYVVESTGVF--TDKDKAAAHLKGGAKKVIISAP-S------KDAPMFVVGVNE 139 (218)
Q Consensus 72 --~g~~i~-v~~~~~p~~i~W~~~gvDiVve~tg~f--~~~~~a~~h~~~GakkViis~p-s------~d~p~~V~gvN~ 139 (218)
+|+.+. ++.. -++--+ .-|++||++-.. .+.+.+....+.|+ -.+++| | ..-|++++|=+.
T Consensus 80 v~~~~aV~~Vi~g----l~~~l~-~G~iiID~sT~~~~~t~~~~~~l~~~Gi--~fldapVSGG~~gA~~G~~im~GG~~ 152 (493)
T PLN02350 80 VKAGAPVDQTIKA----LSEYME-PGDCIIDGGNEWYENTERRIKEAAEKGL--LYLGMGVSGGEEGARNGPSLMPGGSF 152 (493)
T ss_pred CCCcHHHHHHHHH----HHhhcC-CCCEEEECCCCCHHHHHHHHHHHHHcCC--eEEeCCCcCCHHHhcCCCeEEecCCH
Confidence 221111 0000 011111 238999998764 34455556666788 468888 3 135688999888
Q ss_pred cccCC
Q 027805 140 NEYKP 144 (218)
Q Consensus 140 ~~~~~ 144 (218)
+.|+.
T Consensus 153 ~a~~~ 157 (493)
T PLN02350 153 EAYKN 157 (493)
T ss_pred HHHHH
Confidence 87754
No 261
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=73.65 E-value=18 Score=33.06 Aligned_cols=134 Identities=10% Similarity=0.126 Sum_probs=67.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
-+|.|.|.|.+|...++.+... +.+++++... +.+....+-+ +|. + .+++.+.. ..
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~--~~~~~~~a~~----lGa----------~--~~i~~~~~-----~~ 235 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRS--SEKEREAIDR----LGA----------D--SFLVTTDS-----QK 235 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCC--hHHhHHHHHh----CCC----------c--EEEcCcCH-----HH
Confidence 3788999999999988877665 4677776542 1111111111 121 0 11221100 00
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCcc-ccCCCCCEEEcCChhhhhHHHH
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNASCTTNCLAPL 162 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~-~~~~~~~IIs~aSCtT~~Lap~ 162 (218)
..+.. .++|+||||+|.-.+.+.+-..++.|-+-|.+..+..+. .++.. .+.++..|...-.++...+..+
T Consensus 236 v~~~~---~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~-----~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 307 (375)
T PLN02178 236 MKEAV---GTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPL-----DLPIFPLVLGRKMVGGSQIGGMKETQEM 307 (375)
T ss_pred HHHhh---CCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCC-----ccCHHHHHhCCeEEEEeCccCHHHHHHH
Confidence 00111 168999999997545555556666665444444332211 11221 1222334544444455566777
Q ss_pred HHHHHhh
Q 027805 163 AKVIHDK 169 (218)
Q Consensus 163 lk~L~~~ 169 (218)
++.+.+.
T Consensus 308 ~~l~~~g 314 (375)
T PLN02178 308 LEFCAKH 314 (375)
T ss_pred HHHHHhC
Confidence 7776543
No 262
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=73.45 E-value=7.3 Score=37.14 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.3
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcC
Q 027805 3 KVKIGINGF-GRIGRLVARVILQR 25 (218)
Q Consensus 3 ~~kvgInG~-GrIGr~~~r~~~~~ 25 (218)
.+||+|+|. |.+|..++..+...
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 489999998 99999999988765
No 263
>PRK08219 short chain dehydrogenase; Provisional
Probab=73.41 E-value=5.6 Score=32.48 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=26.4
Q ss_pred CCccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 1 m~~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
||++++-|.| .|.||+.+++.+.+. .+++++.-
T Consensus 1 ~~~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r 34 (227)
T PRK08219 1 MERPTALITGASRGIGAAIARELAPT--HTLLLGGR 34 (227)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeC
Confidence 5556899999 899999999999876 66776653
No 264
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=73.19 E-value=25 Score=31.57 Aligned_cols=138 Identities=12% Similarity=0.174 Sum_probs=70.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
-+|.|+|.|.+|...++.+... +.+++++.+. .+....+++ .+|- . .. ++... +..
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~---~~~~~~~~~---~~Ga-~----------~~-i~~~~-----~~~ 237 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAM-GHHVTVISSS---DKKREEALE---HLGA-D----------DY-LVSSD-----AAE 237 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCC---HHHHHHHHH---hcCC-c----------EE-ecCCC-----hHH
Confidence 4688999999999988877655 4677776543 222212211 1221 0 01 11000 000
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCcc-ccCCCCCEEEcCChhhhhHHHH
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNASCTTNCLAPL 162 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~-~~~~~~~IIs~aSCtT~~Lap~ 162 (218)
..+.. .++|+||||+|.-.+.+.+-..++.|.+-|.+..++... .++.. .+.++..+......+..-+.-+
T Consensus 238 ~~~~~---~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~-----~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 309 (357)
T PLN02514 238 MQEAA---DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPL-----QFVTPMLMLGRKVITGSFIGSMKETEEM 309 (357)
T ss_pred HHHhc---CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCC-----cccHHHHhhCCcEEEEEecCCHHHHHHH
Confidence 01111 168999999996555666666777776444444332211 12222 1222334555544454456666
Q ss_pred HHHHHhhcCeeE
Q 027805 163 AKVIHDKFGIVE 174 (218)
Q Consensus 163 lk~L~~~fgI~~ 174 (218)
+..+.+. .++.
T Consensus 310 ~~~~~~g-~l~~ 320 (357)
T PLN02514 310 LEFCKEK-GLTS 320 (357)
T ss_pred HHHHHhC-CCcC
Confidence 6666554 4553
No 265
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=73.02 E-value=5.7 Score=35.22 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=21.9
Q ss_pred EEEEccChhHHHHHHHHHcCCCceEEEEeCCC
Q 027805 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (218)
Q Consensus 6 vgInG~GrIGr~~~r~~~~~~~~~vvaInd~~ 37 (218)
|+|+|.|.+|..++..+....-.+|+ +.|..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~-L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVV-LLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEE-EEeCC
Confidence 68999999999988877654312544 44653
No 266
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=72.95 E-value=6 Score=34.40 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=23.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
+||+|+|.|.+|..++..+.+. +.+|+.+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA-GHDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEE
Confidence 3899999999999999888765 35665554
No 267
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=72.46 E-value=5 Score=37.81 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=24.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+||||+|+|.+|..++.++.+ +.+++++.
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~--~~~V~g~D 35 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK--SRQVVGFD 35 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc--CCEEEEEe
Confidence 4799999999999999988655 38888764
No 268
>PRK06545 prephenate dehydrogenase; Validated
Probab=72.11 E-value=5.3 Score=36.50 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=22.3
Q ss_pred EEEEEccChhHHHHHHHHHcCC-CceEEE
Q 027805 5 KIGINGFGRIGRLVARVILQRD-DVELVA 32 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~-~~~vva 32 (218)
||+|+|+|.||..+++.+.... .+.++.
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~ 30 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIG 30 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEE
Confidence 7999999999999999997663 344443
No 269
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=72.10 E-value=36 Score=30.39 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=22.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCce-EEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~-vvaIn 34 (218)
-+|.|.|.|.+|...++.+... +.+ ++++.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~ 208 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALA-GASKIIAVD 208 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEc
Confidence 4789999999999988877665 464 66663
No 270
>PRK08618 ornithine cyclodeaminase; Validated
Probab=72.04 E-value=6.4 Score=35.46 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=28.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+++|+|.|.+|+.+++++....+++.+.|.+.
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r 160 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR 160 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECC
Confidence 589999999999999988876667888888887
No 271
>PRK10083 putative oxidoreductase; Provisional
Probab=71.66 E-value=14 Score=32.30 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=51.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
-+|.|+|.|.+|...++.+...-+.+++.+.+. +.+.+..+.+ +|. . .+++-+.-.+ .+ .
T Consensus 162 ~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~----~Ga-~-----------~~i~~~~~~~-~~-~ 221 (339)
T PRK10083 162 DVALIYGAGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKE----SGA-D-----------WVINNAQEPL-GE-A 221 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHH----hCC-c-----------EEecCccccH-HH-H
Confidence 378999999999988887654324655555554 3344333221 221 0 1111110000 00 0
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeC
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ 125 (218)
...-. .++|+||||+|.-.+...+..+++.+-+-+.+..
T Consensus 222 ~~~~g---~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 222 LEEKG---IKPTLIIDAACHPSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred HhcCC---CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 11111 2467999999954445566677776664444443
No 272
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=71.51 E-value=6 Score=36.62 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=25.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
|+|.|.|+|++|+.+++.+... +.+++.|.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~-g~~v~vid 30 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE-NNDVTVID 30 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEEEEE
Confidence 3899999999999999988765 57888774
No 273
>CHL00194 ycf39 Ycf39; Provisional
Probab=71.40 E-value=6.8 Score=34.56 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=26.2
Q ss_pred EEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 5 kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
||.|.| .|.||+.+++.+.+. +.+|+++.-
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~-g~~V~~l~R 32 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDE-GYQVRCLVR 32 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHC-CCeEEEEEc
Confidence 899999 899999999999876 478888864
No 274
>PRK08328 hypothetical protein; Provisional
Probab=71.29 E-value=7 Score=33.58 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=25.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
..||.|+|.|-+|..+++.+.... +.-+.|.|.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD~ 59 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAG-VGRILLIDE 59 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 368999999999999999998663 444444454
No 275
>PLN02740 Alcohol dehydrogenase-like
Probab=71.27 E-value=11 Score=34.32 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=23.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCc-eEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~-~vvaIn 34 (218)
-+|.|+|.|.+|...++.+... +. +++++.
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~-G~~~Vi~~~ 230 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARAR-GASKIIGVD 230 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCCcEEEEc
Confidence 3789999999999988877765 45 466653
No 276
>PTZ00325 malate dehydrogenase; Provisional
Probab=71.22 E-value=7.1 Score=35.50 Aligned_cols=141 Identities=20% Similarity=0.259 Sum_probs=72.0
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 3 ~~kvgInG~-GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
+.||+|+|. |+||..++..+...+...-+.+.|.. .++-. . -|--|+ . . ...+...
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~-~~~g~--a--~Dl~~~-----------~-~------~~~v~~~ 64 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV-GAPGV--A--ADLSHI-----------D-T------PAKVTGY 64 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC-CCccc--c--cchhhc-----------C-c------CceEEEe
Confidence 469999997 99999999888755433333333431 11000 0 021110 0 0 1112222
Q ss_pred cCC----CCCCccCCCccEEEeeCCcccCH-----H-----------hHHHHHhCCCCEEEEeCC-CCCCCeEEeec---
Q 027805 82 RNP----EEIPWAETGAEYVVESTGVFTDK-----D-----------KAAAHLKGGAKKVIISAP-SKDAPMFVVGV--- 137 (218)
Q Consensus 82 ~~p----~~i~W~~~gvDiVve~tg~f~~~-----~-----------~a~~h~~~GakkViis~p-s~d~p~~V~gv--- 137 (218)
.|+ +.+ .+.|+||-+.|.-... + -.+.-.+.|.+++|+-.+ +.|.-+.+..-
T Consensus 65 td~~~~~~~l----~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~ 140 (321)
T PTZ00325 65 ADGELWEKAL----RGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLK 140 (321)
T ss_pred cCCCchHHHh----CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhh
Confidence 232 223 3899999999964331 1 111222457776554332 22321111110
Q ss_pred CccccCCCCCEEEcCChhhhhHHHHHHHHHhhcCeeE
Q 027805 138 NENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174 (218)
Q Consensus 138 N~~~~~~~~~IIs~aSCtT~~Lap~lk~L~~~fgI~~ 174 (218)
....+ +..+++..+ +-=-+++-..|-+.+++.-
T Consensus 141 ~~sg~-p~~~viG~g---~LDs~R~r~~la~~l~v~~ 173 (321)
T PTZ00325 141 KAGVY-DPRKLFGVT---TLDVVRARKFVAEALGMNP 173 (321)
T ss_pred hccCC-Chhheeech---hHHHHHHHHHHHHHhCcCh
Confidence 11122 246788662 4777899999999999874
No 277
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=71.20 E-value=8.2 Score=34.90 Aligned_cols=34 Identities=26% Similarity=0.200 Sum_probs=29.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~ 37 (218)
.++||+|+|.+|+.+++++.....++-+.|.|..
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~ 162 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRT 162 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 5899999999999999998776678888888873
No 278
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=71.15 E-value=6.9 Score=36.93 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=30.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCc
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 38 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~ 38 (218)
.||+|-|||.+|+..++.+.+. +.+||++.|...
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~-GAkvva~sds~g 241 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHEL-GAKVVAVSDSKG 241 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHc-CCEEEEEEcCCC
Confidence 6999999999999999998776 799999999753
No 279
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.88 E-value=19 Score=33.45 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=25.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
..+|.|.|.|++|...++.+.+.. .+|+++ |.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G-~~V~~~-d~ 36 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLG-AKVILT-DE 36 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEE-eC
Confidence 479999999999999999998874 666544 54
No 280
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.76 E-value=10 Score=35.02 Aligned_cols=100 Identities=19% Similarity=0.265 Sum_probs=57.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEE--EEEee
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV--TVFGV 81 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i--~v~~~ 81 (218)
-.++|.|+|-+|..+++-+....--+|++|. . +.+.. ++....|.- =.||-+.. ++ ||
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvD-i--N~~Kf----~~ak~fGaT------------e~iNp~d~~~~i-~e 253 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVD-I--NPDKF----EKAKEFGAT------------EFINPKDLKKPI-QE 253 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEe-c--CHHHH----HHHHhcCcc------------eecChhhccccH-HH
Confidence 4689999999999999888777777888883 2 33322 222222211 11222100 11 11
Q ss_pred cCCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCC-CEEEEeCC
Q 027805 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA-KKVIISAP 126 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~Ga-kkViis~p 126 (218)
. ..++ -+-|+||-|||+|.-.++..|-..-..|- +.|+|--+
T Consensus 254 v-i~Em--TdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~ 296 (375)
T KOG0022|consen 254 V-IIEM--TDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVA 296 (375)
T ss_pred H-HHHH--hcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEec
Confidence 1 1111 13599999999999888876654444452 34665444
No 281
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=70.44 E-value=6.8 Score=32.51 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=23.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
.+|+|+|||.-|+.++.++.++. ++|+.-..
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG-~~V~Vglr 35 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSG-VNVIVGLR 35 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CEEEEECCChHHHHHHHHHHhCC-CCEEEEec
Confidence 68999999999999999999884 77664443
No 282
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=70.31 E-value=3.4 Score=38.40 Aligned_cols=117 Identities=13% Similarity=0.161 Sum_probs=57.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC-CcChhhhhhheee-ccccccccCccEEEeCCceE-EECC-EEEEE
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKY-DSVHGQWKHHELKVKDDKTL-LFGE-KPVTV 78 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~-~~~~~~~ayl~ky-dS~~G~~~~~~v~~~~~~~l-~i~g-~~i~v 78 (218)
..||.|+|.|-+|..++..+... ++.-+.|.|. ..+.+.+..-+-| .+.-|+.. .++- .. .| .+|- -.|..
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~-Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~K-a~~a--~~-~l~~~np~v~i~~ 116 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAA-GVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSK-AQSA--RD-SIVEINPLVNVRL 116 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCEecCcccccccccChhcCCChH-HHHH--HH-HHHHhCCCcEEEE
Confidence 46999999999999999999765 3544555554 2233333332222 12234432 1110 00 01 1221 12222
Q ss_pred Eeec-CCCCCCccCCCccEEEeeCCcccCHHhHH-HHHhCCCCEEEEeCC
Q 027805 79 FGVR-NPEEIPWAETGAEYVVESTGVFTDKDKAA-AHLKGGAKKVIISAP 126 (218)
Q Consensus 79 ~~~~-~p~~i~W~~~gvDiVve~tg~f~~~~~a~-~h~~~GakkViis~p 126 (218)
..++ ++++++=--.+.|+||+|+..+.++.... ...+.|.+ +|.+.
T Consensus 117 ~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p--~v~~~ 164 (392)
T PRK07878 117 HEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKP--YVWGS 164 (392)
T ss_pred EeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCC--EEEEE
Confidence 2211 11111000136899999999886654332 23344543 44444
No 283
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=70.12 E-value=5.1 Score=38.32 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=24.2
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
+|||+|+|.+|..+++++.+.. ++|++.|
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G-~~V~v~d 29 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG-FTVSVYN 29 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC-CeEEEEe
Confidence 4899999999999999998874 6766554
No 284
>PRK06153 hypothetical protein; Provisional
Probab=70.01 E-value=3 Score=39.16 Aligned_cols=103 Identities=8% Similarity=0.012 Sum_probs=52.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhe-ee-ccccccccCccEEEeCCceE-EECCEEEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMF-KY-DSVHGQWKHHELKVKDDKTL-LFGEKPVTVFG 80 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~-ky-dS~~G~~~~~~v~~~~~~~l-~i~g~~i~v~~ 80 (218)
.||+|+|+|=+|..++..+...+=-+++-|-+-..+...+-+.+ .| .+.-|+-. ..+++-.+ .+ .++- .|....
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~-~KVevaa~-rl~~in~-~I~~~~ 253 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAP-KKVDYFKS-RYSNMRR-GIVPHP 253 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcc-hHHHHHHH-HHHHhCC-eEEEEe
Confidence 69999999999999999998775335554433222333433332 11 11233311 01111001 01 1221 122211
Q ss_pred e-cCCCCCCccCCCccEEEeeCCcccCHHhH
Q 027805 81 V-RNPEEIPWAETGAEYVVESTGVFTDKDKA 110 (218)
Q Consensus 81 ~-~~p~~i~W~~~gvDiVve~tg~f~~~~~a 110 (218)
+ -++++++. -.+.|+||+|+..+.++...
T Consensus 254 ~~I~~~n~~~-L~~~DiV~dcvDn~~aR~~l 283 (393)
T PRK06153 254 EYIDEDNVDE-LDGFTFVFVCVDKGSSRKLI 283 (393)
T ss_pred ecCCHHHHHH-hcCCCEEEEcCCCHHHHHHH
Confidence 1 13333321 13789999999988776433
No 285
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=69.76 E-value=5.7 Score=37.11 Aligned_cols=24 Identities=29% Similarity=0.689 Sum_probs=21.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRD 26 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~ 26 (218)
+.+|||+|||-+|+..+..+.+.+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aG 75 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAG 75 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcC
Confidence 479999999999999999888765
No 286
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=69.65 E-value=6.7 Score=35.82 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=28.8
Q ss_pred CCccEEEEEccChhHHHHHHHHHc------CCCceEEEEeCCC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQ------RDDVELVAVNDPF 37 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~------~~~~~vvaInd~~ 37 (218)
|+++||+|+|.|-||-.-+-.+++ .|..++..+.|-+
T Consensus 1 ~~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 1 NKTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 567899999999999877655543 4668888888764
No 287
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=69.45 E-value=7.3 Score=36.47 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=20.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCC
Q 027805 3 KVKIGINGF-GRIGRLVARVILQRD 26 (218)
Q Consensus 3 ~~kvgInG~-GrIGr~~~r~~~~~~ 26 (218)
.+||+|+|. |++|..++..+...+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 489999998 999999999887654
No 288
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=69.25 E-value=11 Score=26.93 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=19.9
Q ss_pred cEEEEEccChhHHHHHHHHHcC
Q 027805 4 VKIGINGFGRIGRLVARVILQR 25 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~ 25 (218)
.+++|.|+|.+|+.+++.+.+.
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 6899999999999999988775
No 289
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.05 E-value=35 Score=32.27 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.||+|.|+|+-|+..+|.+.+. +.+++ +.|.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~-g~~v~-~~d~ 39 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAH-LPAQA-LTLF 39 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHc-CCEEE-EEcC
Confidence 5899999999999999998876 46544 4554
No 290
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=68.67 E-value=7.9 Score=37.08 Aligned_cols=31 Identities=39% Similarity=0.488 Sum_probs=25.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCC-CceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~-~~~vvaIn 34 (218)
|||+|+|+|.+|..++-.+.+.. +++++++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 59999999999988877776653 68888883
No 291
>PRK07411 hypothetical protein; Validated
Probab=68.65 E-value=3.9 Score=38.01 Aligned_cols=110 Identities=14% Similarity=0.108 Sum_probs=55.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCC-cChhhhhh--heeeccccccccCccEEEeCCceE-EEC-CEEEE
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF-ITTDYMTY--MFKYDSVHGQWKHHELKVKDDKTL-LFG-EKPVT 77 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~-~~~~~~ay--l~kydS~~G~~~~~~v~~~~~~~l-~i~-g~~i~ 77 (218)
..||.|+|.|-+|..+++.+... ++.-+.|.|.. .+.+.+.. |+..+. -|+.. .++ ... .| .+| +-.|+
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~-Gvg~l~lvD~D~ve~sNL~RQ~l~~~~d-vG~~K-a~~--a~~-~l~~~np~v~v~ 111 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAA-GIGRIGIVDFDVVDSSNLQRQVIHGTSW-VGKPK-IES--AKN-RILEINPYCQVD 111 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCEecccccCcCcccChHH-CCCcH-HHH--HHH-HHHHHCCCCeEE
Confidence 36899999999999999998766 45555565652 13333333 222222 24322 110 001 01 122 11233
Q ss_pred EEeec-CCCCCC-ccCCCccEEEeeCCcccCHHhHH-HHHhCCCC
Q 027805 78 VFGVR-NPEEIP-WAETGAEYVVESTGVFTDKDKAA-AHLKGGAK 119 (218)
Q Consensus 78 v~~~~-~p~~i~-W~~~gvDiVve~tg~f~~~~~a~-~h~~~Gak 119 (218)
.+.++ ++++.. + -.+.|+||+|+..+.++.... ...+.+..
T Consensus 112 ~~~~~~~~~~~~~~-~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 112 LYETRLSSENALDI-LAPYDVVVDGTDNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred EEecccCHHhHHHH-HhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 22211 121110 1 137899999999987765433 33445543
No 292
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=68.59 E-value=14 Score=33.20 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=23.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCc-eEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~-~vvaInd 35 (218)
-+|.|.|.|.+|...++.+... +. .++++..
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~-G~~~vi~~~~ 220 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIR-GASRIIGVDL 220 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcC
Confidence 4789999999999988877655 45 5666643
No 293
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.54 E-value=42 Score=31.10 Aligned_cols=89 Identities=24% Similarity=0.284 Sum_probs=49.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
.+|.|+|+|..|+..++.+... +.++++ .|..........| +.+ + .+.. ...+
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~-G~~v~~-~D~~~~~~~~~~l-----------------~~g--~-----~~~~-~~~~ 59 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLAR-GVTPRV-IDTRITPPGLDKL-----------------PEN--V-----ERHT-GSLN 59 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHC-CCeEEE-EcCCCCchhHHHH-----------------hcC--C-----EEEe-CCCC
Confidence 4799999999999999866665 466654 5532111100000 011 1 1111 1122
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeC
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ 125 (218)
+..++ +.|+||-+.|.-.+.+......+.|++ |++-
T Consensus 60 ~~~~~----~~d~vv~spgi~~~~~~~~~a~~~g~~--v~~~ 95 (438)
T PRK03806 60 DEWLL----AADLIVASPGIALAHPSLSAAADAGIE--IVGD 95 (438)
T ss_pred HHHhc----CCCEEEECCCCCCCCHHHHHHHHCCCe--EEEH
Confidence 22232 468888888876666666666778884 5553
No 294
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=68.33 E-value=10 Score=32.92 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=22.4
Q ss_pred EEEEcc-ChhHHHHHHHHHcCC--CceEEEEeCC
Q 027805 6 IGINGF-GRIGRLVARVILQRD--DVELVAVNDP 36 (218)
Q Consensus 6 vgInG~-GrIGr~~~r~~~~~~--~~~vvaInd~ 36 (218)
|+|+|. |.+|..++..+...+ ...-+.+.|.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~ 34 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDI 34 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeC
Confidence 589998 999999999887665 3233344454
No 295
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=68.23 E-value=17 Score=34.42 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=25.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
.|+-|+|.|-+|.++++++...+--+|+-+|-
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR 210 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANR 210 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC
Confidence 57999999999999999999875445555554
No 296
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=68.20 E-value=35 Score=31.42 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=23.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
-+|.|.|.|.||...++.+... +.+++.+.|.
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~-Ga~~vi~~d~ 218 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLL-GAAVVIVGDL 218 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCceEEEeCC
Confidence 3678899999999988877655 4665556665
No 297
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=68.07 E-value=9.2 Score=34.07 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=23.2
Q ss_pred EEEEEccChhHHHHHHHHHcCCCc-eEEEE
Q 027805 5 KIGINGFGRIGRLVARVILQRDDV-ELVAV 33 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~-~vvaI 33 (218)
||+|+|.|.+|+.++..+...+-. +|+.+
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~ 31 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLI 31 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 899999999999999998876533 44444
No 298
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.68 E-value=9.9 Score=34.58 Aligned_cols=31 Identities=26% Similarity=0.301 Sum_probs=25.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.||||+|.|.||+.++..+... +++|+ +.|+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-G~~V~-l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-GLDVV-AWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCeEE-EEeC
Confidence 5899999999999999988766 57766 4555
No 299
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=67.67 E-value=8.2 Score=36.58 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=23.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
.+|+|+|+|.||+.+++.+... +.+|+.+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~-Ga~ViV~ 241 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL-GARVIVT 241 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEE
Confidence 5899999999999999988766 4675544
No 300
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=67.43 E-value=8.5 Score=36.02 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=24.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+|+|+|+|.+|+.+++.+...+-.+++.++
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~ 211 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIAN 211 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEe
Confidence 5899999999999999999876324555554
No 301
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=67.43 E-value=20 Score=31.79 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=22.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceE-EEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVEL-VAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~v-vaI 33 (218)
-+|.|.|.|.+|...++.+... +.+. +++
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~ 191 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVAL-GAKSVTAI 191 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEE
Confidence 3789999999999988877655 4664 444
No 302
>PRK06988 putative formyltransferase; Provisional
Probab=67.30 E-value=8.6 Score=34.66 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
|| +||.+.|.+.+|...++.+++. ++++++|-.
T Consensus 1 ~~-mkIvf~Gs~~~a~~~L~~L~~~-~~~i~~Vvt 33 (312)
T PRK06988 1 MK-PRAVVFAYHNVGVRCLQVLLAR-GVDVALVVT 33 (312)
T ss_pred CC-cEEEEEeCcHHHHHHHHHHHhC-CCCEEEEEc
Confidence 65 7999999999999999999876 477776643
No 303
>PRK08655 prephenate dehydrogenase; Provisional
Probab=67.17 E-value=8.8 Score=36.22 Aligned_cols=30 Identities=30% Similarity=0.594 Sum_probs=23.7
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
+||+|+| +|.||+.+++.+.+.. .+++...
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-CEEEEEE
Confidence 3899998 9999999999987764 5655543
No 304
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=66.96 E-value=27 Score=32.28 Aligned_cols=30 Identities=43% Similarity=0.660 Sum_probs=23.4
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
||.|+|+|.+|+.+++.+.+. +.+| .++|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~-G~~V-~~sD~ 30 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK-GAEV-TVTDL 30 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC-CCEE-EEEeC
Confidence 578999999999888888776 4554 45664
No 305
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=66.82 E-value=9.6 Score=34.49 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=23.9
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~-GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
+||+|+|. |.+|..++..+...+-..-+.+.|.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi 34 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI 34 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence 49999998 9999999988876653333334443
No 306
>PRK14851 hypothetical protein; Provisional
Probab=66.64 E-value=2.5 Score=42.34 Aligned_cols=99 Identities=16% Similarity=0.240 Sum_probs=51.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC-CcChhhhhhheee-ccccccccCccEEEeCCceEEEC-CEEEEEE
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKY-DSVHGQWKHHELKVKDDKTLLFG-EKPVTVF 79 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~-~~~~~~~ayl~ky-dS~~G~~~~~~v~~~~~~~l~i~-g~~i~v~ 79 (218)
..||+|+|+|-+|..++..+...+ +.-+.|.|. ..+++.+..-+-| .+.-|+.. -++- ..+-..+| +-.|+.+
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~G-VG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~K-v~v~--~~~l~~inP~~~I~~~ 118 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTG-IGRFHIADFDQFEPVNVNRQFGARVPSFGRPK-LAVM--KEQALSINPFLEITPF 118 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhC-CCeEEEEcCCEecccccccCcCcChhhCCCHH-HHHH--HHHHHHhCCCCeEEEE
Confidence 369999999999999999887653 433334443 2233334332212 23345433 2211 11011344 2345554
Q ss_pred eec-CCCCCCccCCCccEEEeeCCccc
Q 027805 80 GVR-NPEEIPWAETGAEYVVESTGVFT 105 (218)
Q Consensus 80 ~~~-~p~~i~W~~~gvDiVve~tg~f~ 105 (218)
.+. +++++.---.++|+||||+..|.
T Consensus 119 ~~~i~~~n~~~~l~~~DvVid~~D~~~ 145 (679)
T PRK14851 119 PAGINADNMDAFLDGVDVVLDGLDFFQ 145 (679)
T ss_pred ecCCChHHHHHHHhCCCEEEECCCCCc
Confidence 432 33333211138999999998753
No 307
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=66.21 E-value=9 Score=35.75 Aligned_cols=40 Identities=28% Similarity=0.362 Sum_probs=32.4
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCC-CceEEEEeCCCcChhhhh
Q 027805 4 VKIGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMT 44 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~-~~~vvaInd~~~~~~~~a 44 (218)
.|+.|.| +|-||...++.+.+.| .|+|+++..-. +.+.++
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~-n~~~l~ 43 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGK-NVELLA 43 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCC-cHHHHH
Confidence 5999999 9999999999998776 48999998753 554443
No 308
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=65.99 E-value=25 Score=30.87 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=52.8
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (218)
+|-|.|.|.+|....+.+... +.+++++... .+.+..+-+ +|- + .+++.+...+.. ..
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~---~~~~~~~~~----~g~----------~--~~i~~~~~~~~~--~~ 223 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKM-GFRTVAISRG---SDKADLARK----LGA----------H--HYIDTSKEDVAE--AL 223 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCC---hHHHHHHHH----cCC----------c--EEecCCCccHHH--HH
Confidence 788999999999888877765 4677777553 233333321 110 1 112211101100 01
Q ss_pred CCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeC
Q 027805 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (218)
Q Consensus 85 ~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ 125 (218)
. .| .++|+++|++|.-...+.+..++..+..-|.+..
T Consensus 224 ~--~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 224 Q--EL--GGAKLILATAPNAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred H--hc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEec
Confidence 1 12 2689999998755566666677776664444443
No 309
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=65.47 E-value=9.7 Score=33.22 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=23.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
+||+|+|.|.+|..++..+.+. +.+|+.+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~-g~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA-GRDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-CCceEEEe
Confidence 3899999999999999888765 34554443
No 310
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=65.05 E-value=19 Score=34.98 Aligned_cols=31 Identities=16% Similarity=0.059 Sum_probs=23.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
-|+.|+|+|++|...++.+.... ..++ +.|.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG-A~V~-v~d~ 195 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG-AIVR-AFDT 195 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEE-EEeC
Confidence 58999999999999988887664 4544 4454
No 311
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=65.00 E-value=9 Score=37.61 Aligned_cols=39 Identities=21% Similarity=0.544 Sum_probs=29.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhh
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYM 46 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl 46 (218)
.+|-|.|+||+|+.++|.+.+. +.++++|.. |++.+..+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~---d~~~v~~~ 439 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN-KMRITVLER---DISAVNLM 439 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC-CCCEEEEEC---CHHHHHHH
Confidence 4789999999999999988765 578887753 55554333
No 312
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=64.41 E-value=26 Score=35.54 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=25.5
Q ss_pred CCc-cEEEEEccChhHHHH-HHHHHcCCCceEEEEeCC
Q 027805 1 MGK-VKIGINGFGRIGRLV-ARVILQRDDVELVAVNDP 36 (218)
Q Consensus 1 m~~-~kvgInG~GrIGr~~-~r~~~~~~~~~vvaInd~ 36 (218)
||+ .+|.|+|+|..|... ++.+.+. +.+|. ++|.
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~-G~~V~-~sD~ 36 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDR-GYSVS-GSDL 36 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHC-CCeEE-EECC
Confidence 554 469999999999987 7777766 46654 5665
No 313
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=64.21 E-value=13 Score=33.25 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=72.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
+||+|+|.|.+|..++..+......+ |.+.|...+...- .. .|..+. ... .. ..+ .|+. ..|
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~-VvlvDi~~~l~~g-~a--~d~~~~----~~~---~~----~~~-~i~~--t~d 63 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELAD-LVLLDVVEGIPQG-KA--LDMYEA----SPV---GG----FDT-KVTG--TNN 63 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCe-EEEEeCCCChhHH-HH--Hhhhhh----hhc---cC----CCc-EEEe--cCC
Confidence 59999999999999999887764335 4455553333221 11 122111 100 00 111 2332 233
Q ss_pred CCCCCccCCCccEEEeeCCcccCH------------HhHHHHH----h--CCCCEEEEeCCCCCCC-eEEeecCccccCC
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDK------------DKAAAHL----K--GGAKKVIISAPSKDAP-MFVVGVNENEYKP 144 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~------------~~a~~h~----~--~GakkViis~ps~d~p-~~V~gvN~~~~~~ 144 (218)
.+++ .+.|+||-|.|.-... +...... + -.++=+++|+|. |.- .++... ..+ +
T Consensus 64 ~~~~----~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~-di~t~~~~~~--sg~-~ 135 (305)
T TIGR01763 64 YADT----ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL-DAMTYVAWQK--SGF-P 135 (305)
T ss_pred HHHh----CCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH-HHHHHHHHHH--HCc-C
Confidence 3333 3789999999942211 1111111 1 123335556663 211 111111 112 2
Q ss_pred CCCEEEcCChhhhhHHHHHHHHHhhcCeeE
Q 027805 145 ELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174 (218)
Q Consensus 145 ~~~IIs~aSCtT~~Lap~lk~L~~~fgI~~ 174 (218)
..++| +.||..--+++-..|.+.+++..
T Consensus 136 ~~rvi--G~g~~lds~R~~~~la~~l~v~~ 163 (305)
T TIGR01763 136 KERVI--GQAGVLDSARFRTFIAMELGVSV 163 (305)
T ss_pred HHHEE--EeccchHHHHHHHHHHHHhCcCH
Confidence 34676 35666666788889999999764
No 314
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.92 E-value=53 Score=30.63 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=25.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCC-ceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDD-VELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~-~~vvaInd~ 36 (218)
.||.|+|+|..|+..++.++...+ .+|+ +.|.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~-~~D~ 40 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVK-VIDT 40 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEE-EEeC
Confidence 579999999999999998887654 6555 5664
No 315
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=63.69 E-value=11 Score=33.97 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=25.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
.|||.+|+|.+|..+++++.+.. .++..-|-
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG-~~v~v~~r 31 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG-HEVTVYNR 31 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC-CEEEEEeC
Confidence 38999999999999999999874 66665543
No 316
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=63.54 E-value=9.3 Score=35.21 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=24.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
|||.+.|.|.+||-++-.++...+.+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEE
Confidence 3899999999999776666665568888875
No 317
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=63.30 E-value=13 Score=33.77 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=24.4
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCC------ceEEEE
Q 027805 3 KVKIGINGF-GRIGRLVARVILQRDD------VELVAV 33 (218)
Q Consensus 3 ~~kvgInG~-GrIGr~~~r~~~~~~~------~~vvaI 33 (218)
.+||+|.|. |.+|..+++.+...+- .+|+.+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~ 39 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLL 39 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEE
Confidence 479999997 9999999999886542 366655
No 318
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=62.97 E-value=37 Score=30.39 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=23.6
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEe
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.-||-|.| +|++|..+.+.+...+.--+.+||
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~ 38 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVT 38 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEEC
Confidence 35899999 899999999998776422333344
No 319
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=62.89 E-value=45 Score=28.13 Aligned_cols=90 Identities=19% Similarity=0.316 Sum_probs=49.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCce-EEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~-vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
-+|.|+|.|.+|+..++.+... +.. ++++.. +.+....+-+ +|... . + ++...
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~---~~~~~~~~~~----~g~~~--------~--~-~~~~~------- 152 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDP---DAARRELAEA----LGPAD--------P--V-AADTA------- 152 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCcEEEECC---CHHHHHHHHH----cCCCc--------c--c-cccch-------
Confidence 3788999999999888877655 356 666643 2333322211 12101 0 0 11000
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEE
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkVii 123 (218)
.. +...++|++|+++|.....+.+..+++.+.+-+.+
T Consensus 153 --~~--~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 153 --DE--IGGRGADVVIEASGSPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred --hh--hcCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEE
Confidence 00 11237999999988655555566677666533334
No 320
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=62.88 E-value=12 Score=33.40 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=27.7
Q ss_pred CccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 2 GKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 2 ~~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
+++||-|.| .|.||+.+++.+++. +.+|+++..
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d~ 47 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFL-NQTVIGLDN 47 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeC
Confidence 347999999 899999999999987 478888853
No 321
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=62.27 E-value=11 Score=34.24 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=27.0
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEEeCCC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~ 37 (218)
|+..||||+|.|.+|+-++..+.. .+++|+ +.|+.
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~-~G~~V~-l~D~~ 35 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFAL-AGYDVV-LKDIS 35 (307)
T ss_pred CCccEEEEEcccchhHHHHHHHhh-cCCceE-EEeCC
Confidence 455799999999999999988877 556655 44553
No 322
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=62.26 E-value=11 Score=37.34 Aligned_cols=36 Identities=31% Similarity=0.688 Sum_probs=27.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhh
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYM 43 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ 43 (218)
.+|-|.|+||+|+.++|.+.+. +++++.|.. |++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~---d~~~v 436 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDH---DPDHI 436 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC-CCCEEEEEC---CHHHH
Confidence 4788999999999999998775 578887732 44544
No 323
>PRK07340 ornithine cyclodeaminase; Validated
Probab=62.12 E-value=13 Score=33.37 Aligned_cols=33 Identities=18% Similarity=0.025 Sum_probs=27.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+++|+|+|.+|+.+++++.....++-+.|.+.
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r 158 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR 158 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 589999999999999999875444667777776
No 324
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=62.07 E-value=12 Score=36.14 Aligned_cols=29 Identities=21% Similarity=0.356 Sum_probs=24.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
.||||+|.|.+|+.+++.+... +.+|+..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a-G~~V~l~ 34 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA-GHQVLLY 34 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC-CCeEEEE
Confidence 5899999999999999998876 5777654
No 325
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=61.88 E-value=39 Score=31.92 Aligned_cols=32 Identities=16% Similarity=0.372 Sum_probs=24.6
Q ss_pred ccEEEEEcc----ChhHHHHHHHHHcCCC-ceEEEEe
Q 027805 3 KVKIGINGF----GRIGRLVARVILQRDD-VELVAVN 34 (218)
Q Consensus 3 ~~kvgInG~----GrIGr~~~r~~~~~~~-~~vvaIn 34 (218)
..+|+|+|. |.+|+.+++++.+.+. -+|..||
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vn 43 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVN 43 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEEC
Confidence 468999996 8899999999987641 2666666
No 326
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=61.47 E-value=21 Score=32.21 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=23.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCc-eEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~-~vvaIn 34 (218)
-+|.|+|.|.+|...++.+... +. +++++.
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~-G~~~Vi~~~ 217 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMA-KASRIIAID 217 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEc
Confidence 3789999999999988877665 45 566663
No 327
>PLN02827 Alcohol dehydrogenase-like
Probab=60.83 E-value=21 Score=32.51 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=21.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCce-EEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~-vvaI 33 (218)
-+|.|.|.|.+|...++.+... ++. ++++
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~-G~~~vi~~ 224 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLR-GASQIIGV 224 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEE
Confidence 3788999999999988877655 464 4444
No 328
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.77 E-value=41 Score=31.62 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.||+|.|+|+.|+.+++.+.+.. .++. +.|.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G-~~V~-~~D~ 45 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG-AKVT-AFDK 45 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC-CEEE-EECC
Confidence 48999999999999999888774 5544 4664
No 329
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.55 E-value=50 Score=31.28 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=24.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.||.|.|+|..|+.+++.+.... .+++ +.|.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G-~~V~-~~D~ 46 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELG-CDVV-VADD 46 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC-CEEE-EECC
Confidence 48999999999999999888765 5544 4553
No 330
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=60.49 E-value=18 Score=32.54 Aligned_cols=96 Identities=19% Similarity=0.267 Sum_probs=49.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCce-EEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~-vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
-+|.|+|.|.+|...++.+... +.+ ++++ +. +.+....+-+ +|. + ..++.+...+..
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~-G~~~v~~~-~~--~~~k~~~~~~----~g~----------~--~~i~~~~~~~~~-- 245 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIA-GCTTIIAV-DI--VDSRLELAKE----LGA----------T--HVINPKEEDLVA-- 245 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEE-eC--CHHHHHHHHH----cCC----------c--EEecCCCcCHHH--
Confidence 3788999999999888777665 464 4444 33 2233222211 110 0 111111000000
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEE
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkVii 123 (218)
...++. ..++|+|+||+|.-...+.+..++..+.+-+.+
T Consensus 246 ~v~~~~--~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 246 AIREIT--GGGVDYALDTTGVPAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred HHHHHh--CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEe
Confidence 011111 247999999998644556666777766643333
No 331
>PLN02240 UDP-glucose 4-epimerase
Probab=59.87 E-value=16 Score=32.23 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=27.3
Q ss_pred CccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 2 GKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 2 ~~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
+..||-|.| .|.||+.+++.+.+.+ .+|+++..
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~ 37 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDN 37 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 347999999 8999999999998764 78888753
No 332
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=59.85 E-value=14 Score=36.85 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=24.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCC-CceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~-~~~vvaInd~ 36 (218)
.||+|+|+|.+|..+++.+.... ..+|+++ |+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~-d~ 36 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAV-DR 36 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEE-EC
Confidence 68999999999999999988664 2455554 44
No 333
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=59.84 E-value=10 Score=35.86 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=23.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
.+|||+|+|.||-.++-+... .+++++++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~-~G~~ViG~ 38 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFAS-AGFKVIGV 38 (436)
T ss_pred eEEEEEccccccHHHHHHHHH-cCCceEeE
Confidence 799999999999877655444 46888887
No 334
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.83 E-value=53 Score=30.55 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=23.6
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.|.|+|+|.+|+.++|.+.+.. .+++ ++|.
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G-~~v~-~~D~ 37 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG-IPFA-VMDS 37 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC-CeEE-EEeC
Confidence 5899999999999888887764 6544 5664
No 335
>PLN00106 malate dehydrogenase
Probab=59.75 E-value=15 Score=33.45 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=24.3
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~-GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.||+|+|. |+||..++..+..++-..-+.+-|.
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di 52 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDI 52 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEec
Confidence 69999997 9999999998886654433334444
No 336
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=59.72 E-value=63 Score=28.37 Aligned_cols=87 Identities=17% Similarity=0.284 Sum_probs=48.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
-++.|.|.|.+|+..++.+... +.+++.+... .+...++.+ +|. . ..++.+....
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~-G~~v~~~~~~---~~~~~~~~~----~g~-~-----------~vi~~~~~~~----- 225 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKAL-GAEVTAFSRS---PSKKEDALK----LGA-D-----------EFIATKDPEA----- 225 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCeEEEEcCC---HHHHHHHHH----cCC-c-----------EEecCcchhh-----
Confidence 3688889999999888776655 4677666442 233322211 110 0 1111110000
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCC
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~Ga 118 (218)
...+ ..++|+|++|+|.-...+.+..++..+.
T Consensus 226 ~~~~---~~~~d~v~~~~g~~~~~~~~~~~l~~~G 257 (337)
T cd05283 226 MKKA---AGSLDLIIDTVSASHDLDPYLSLLKPGG 257 (337)
T ss_pred hhhc---cCCceEEEECCCCcchHHHHHHHhcCCC
Confidence 0111 2379999999997655566667776655
No 337
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=59.43 E-value=21 Score=27.76 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=25.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCce-EEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~-vvaInd 35 (218)
.|+.|+|.|-+||.+++.+.... ++ |.-+|-
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g-~~~i~i~nR 44 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALG-AKEITIVNR 44 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTT-SSEEEEEES
T ss_pred CEEEEECCHHHHHHHHHHHHHcC-CCEEEEEEC
Confidence 68999999999999999998874 54 555553
No 338
>PRK08223 hypothetical protein; Validated
Probab=59.36 E-value=8.2 Score=34.71 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=50.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC-CcChhhhhhheee-ccccccccCccEEEeCCceEEECC-EEEEEE
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKY-DSVHGQWKHHELKVKDDKTLLFGE-KPVTVF 79 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~-~~~~~~~ayl~ky-dS~~G~~~~~~v~~~~~~~l~i~g-~~i~v~ 79 (218)
.-||.|+|+|-+|..++..+.... +.-+.|.|. ..+.+.+..-+-| .+.-|+.. .++ ...+-..+|- -.|+.+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aG-VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~K-ve~--a~~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLG-IGKFTIADFDVFELRNFNRQAGAMMSTLGRPK-AEV--LAEMVRDINPELEIRAF 102 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhC-CCeEEEEeCCCcchhccccccCcChhHCCCcH-HHH--HHHHHHHHCCCCEEEEE
Confidence 368999999999999999887663 444445454 2234444332222 22245432 111 0110012332 233333
Q ss_pred ee-cCCCCCCccCCCccEEEeeCCcc
Q 027805 80 GV-RNPEEIPWAETGAEYVVESTGVF 104 (218)
Q Consensus 80 ~~-~~p~~i~W~~~gvDiVve~tg~f 104 (218)
.+ -+++++..--.+.|+|+||+..|
T Consensus 103 ~~~l~~~n~~~ll~~~DlVvD~~D~~ 128 (287)
T PRK08223 103 PEGIGKENADAFLDGVDVYVDGLDFF 128 (287)
T ss_pred ecccCccCHHHHHhCCCEEEECCCCC
Confidence 32 12333221113789999999976
No 339
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=59.22 E-value=11 Score=31.49 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=25.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
..||.|+|.|-+|..+++++... ++.-+.+.|.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~-GVg~i~lvD~ 51 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLA-GIDSITIVDH 51 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEEC
Confidence 36899999999999999999765 4554445443
No 340
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=59.18 E-value=12 Score=33.41 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=21.3
Q ss_pred EEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 8 INGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 8 InG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
|+|.|.||..++..+...+-+.-+.+.|.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di 29 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI 29 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999999998877654443444454
No 341
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=58.94 E-value=16 Score=32.60 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=23.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+||+|+|.|.||..++-.+... +.+|+.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~ 32 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA-GLPVRLIL 32 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC-CCCeEEEE
Confidence 36999999999999887777655 34555443
No 342
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=58.41 E-value=29 Score=31.16 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=22.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCc-eEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~-~vvaIn 34 (218)
-+|.|.|.|.+|...++.+... +. .++++.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~-G~~~Vi~~~ 216 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIA-GASRIIGVD 216 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEe
Confidence 4789999999999988877665 46 466554
No 343
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=58.35 E-value=53 Score=28.51 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=49.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
-+|.|.|.|-+|+..++.+... +.+++++... .+...++-+ .| .. ..++.+...... .
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~---~~~~~~~~~----~g-~~-----------~~~~~~~~~~~~-~- 221 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAM-GFETVAITRS---PDKRELARK----LG-AD-----------EVVDSGAELDEQ-A- 221 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCC---HHHHHHHHH----hC-Cc-----------EEeccCCcchHH-h-
Confidence 3788999988999887777665 4777777543 233333311 11 00 111111000000 0
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEE
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkVii 123 (218)
. ..++|+|++|.+.....+.+..++..+.+-+.+
T Consensus 222 ---~---~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 222 ---A---AGGADVILVTVVSGAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred ---c---cCCCCEEEECCCcHHHHHHHHHhcccCCEEEEE
Confidence 1 126899999987655556666677665533334
No 344
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=58.31 E-value=16 Score=33.70 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=24.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.||.|+|+|++|+..++.+.... .+++.++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d 197 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG-ATVTILD 197 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC-CeEEEEE
Confidence 57999999999999999988764 6655553
No 345
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.26 E-value=11 Score=35.93 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.0
Q ss_pred CccEEEEEccChhHHHHHHHHHcC
Q 027805 2 GKVKIGINGFGRIGRLVARVILQR 25 (218)
Q Consensus 2 ~~~kvgInG~GrIGr~~~r~~~~~ 25 (218)
+..+|+|+|.|..|-..+|.+...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~ 28 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLRE 28 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHC
Confidence 468999999999999999988754
No 346
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=58.18 E-value=13 Score=32.89 Aligned_cols=123 Identities=19% Similarity=0.241 Sum_probs=59.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCC--CceEEEEeCCCc-ChhhhhhheeeccccccccCccEEEeCCceEEECC-EEEE--
Q 027805 4 VKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFI-TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVT-- 77 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~--~~~vvaInd~~~-~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g-~~i~-- 77 (218)
-+|.|+|.|=+|...+.+|.... ++.|+=.-|... +.+...+.+ -++.|+-. -++. ++. -..||= -.++
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~--~~~iGk~K-v~vm-~er-i~~InP~c~V~~~ 105 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHAL--LGDIGKPK-VEVM-KER-IKQINPECEVTAI 105 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhh--hhhcccHH-HHHH-HHH-HHhhCCCceEeeh
Confidence 47999999999999999998653 233222222211 122222222 13456533 1111 111 112221 0111
Q ss_pred --EEeecCCCCCCccCCCccEEEeeCCcccCHHhHHHHH-hCCCCEEEEeCCCCC--CCeEE
Q 027805 78 --VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHL-KGGAKKVIISAPSKD--APMFV 134 (218)
Q Consensus 78 --v~~~~~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~-~~GakkViis~ps~d--~p~~V 134 (218)
.+.+.+.+++-. .+.|||+||......+...-.+. +.+. +||-|+.+.. +|+-+
T Consensus 106 ~~f~t~en~~~~~~--~~~DyvIDaiD~v~~Kv~Li~~c~~~ki-~vIss~Gag~k~DPTri 164 (263)
T COG1179 106 NDFITEENLEDLLS--KGFDYVIDAIDSVRAKVALIAYCRRNKI-PVISSMGAGGKLDPTRI 164 (263)
T ss_pred HhhhCHhHHHHHhc--CCCCEEEEchhhhHHHHHHHHHHHHcCC-CEEeeccccCCCCCceE
Confidence 112233333432 37899999999877764433333 2334 5665555432 56443
No 347
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=57.83 E-value=52 Score=27.08 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=23.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
-+|.|+|.|.+|+..++.+.... .+++++..
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~ 166 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDR 166 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEcC
Confidence 47899998779999888776654 77777644
No 348
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=57.72 E-value=18 Score=33.04 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=25.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+|||+|-|..|+.+++++... +++++.+.
T Consensus 3 ~~igilG~Gql~~ml~~aa~~l-G~~v~~~d 32 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPL-GYKVIVLD 32 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEEEe
Confidence 4899999999999999988776 58877664
No 349
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=57.65 E-value=60 Score=28.39 Aligned_cols=136 Identities=15% Similarity=0.215 Sum_probs=67.0
Q ss_pred EEEEEccChhHHHHHHHHHcCCCce-EEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~-vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
.|.|.|-|.+|...++.+... +.+ ++++... .+....+-+ +|. + -+++.+..... +.
T Consensus 171 ~vlI~g~g~vg~~~~~lak~~-G~~~v~~~~~~---~~~~~~~~~----~ga----------~--~v~~~~~~~~~--~~ 228 (345)
T cd08287 171 TVVVVGDGAVGLCAVLAAKRL-GAERIIAMSRH---EDRQALARE----FGA----------T--DIVAERGEEAV--AR 228 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCEEEEECCC---HHHHHHHHH----cCC----------c--eEecCCcccHH--HH
Confidence 678889999999988777655 465 5555432 222211111 110 0 11221110000 00
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCc-cccCCCCCEEEcCChhhhhHHHH
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNE-NEYKPELNIVSNASCTTNCLAPL 162 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~-~~~~~~~~IIs~aSCtT~~Lap~ 162 (218)
..++. ...++|+++||+|.-...+.+..++..+..-++++.++... .+|. ..+.....+...+.+.-..+..+
T Consensus 229 i~~~~-~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (345)
T cd08287 229 VRELT-GGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGV-----ELDVRELFFRNVGLAGGPAPVRRYLPEL 302 (345)
T ss_pred HHHhc-CCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCC-----ccCHHHHHhcceEEEEecCCcHHHHHHH
Confidence 00111 11368999999986556667777777665333333332111 1222 22222334555555555666777
Q ss_pred HHHHHh
Q 027805 163 AKVIHD 168 (218)
Q Consensus 163 lk~L~~ 168 (218)
++.+.+
T Consensus 303 ~~~~~~ 308 (345)
T cd08287 303 LDDVLA 308 (345)
T ss_pred HHHHHc
Confidence 766643
No 350
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=57.65 E-value=4.6 Score=30.38 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=40.6
Q ss_pred CCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCcc-ccCCCCCEEEcCChhhhhHHHHHH
Q 027805 92 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNASCTTNCLAPLAK 164 (218)
Q Consensus 92 ~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~-~~~~~~~IIs~aSCtT~~Lap~lk 164 (218)
.++|+||||+|.-...+.+-..++.|.+-|++..++.+ + + .+|.. .+.++..+...-.++..-.--+++
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~~~-~-~--~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~ 126 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYGGD-P-I--SFNLMNLMFKEITIRGSWGGSPEDFQEALQ 126 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTSTS-E-E--EEEHHHHHHTTEEEEEESSGGHHHHHHHHH
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccCCC-C-C--CCCHHHHHhCCcEEEEEccCCHHHHHHHHH
Confidence 48999999999766777777777777766666655411 1 1 11222 222345566666666444433333
No 351
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=57.48 E-value=14 Score=35.65 Aligned_cols=31 Identities=26% Similarity=0.554 Sum_probs=25.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
-++-|.|+|++|+.+++.+.++ +.+++.|..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~ 448 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA-GIPLVVIET 448 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC-CCCEEEEEC
Confidence 4678999999999999998776 467777753
No 352
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.12 E-value=56 Score=30.25 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=24.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.++.|.|.|++|+..++.+.+.. .+|++ +|.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G-~~V~~-~d~ 36 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG-ANVTV-NDG 36 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CEEEE-EcC
Confidence 58999999999999999888764 66554 454
No 353
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=57.10 E-value=21 Score=27.61 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=23.6
Q ss_pred EEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 6 IGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 6 vgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
|.|+|.|.||..++..+.+ .+.++.-+.-.
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEcc
Confidence 6899999999999888876 45676666543
No 354
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=57.10 E-value=93 Score=26.16 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=24.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.||.|+|-|.+|..-++.+++.+ ..|+.|+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~g-a~VtVvs 39 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAG-AQLRVIA 39 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC-CEEEEEc
Confidence 58999999999999999988864 5666553
No 355
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=56.53 E-value=44 Score=30.41 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=29.7
Q ss_pred ccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCC-CCCCCeEEeecC
Q 027805 94 AEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-SKDAPMFVVGVN 138 (218)
Q Consensus 94 vDiVve~tg~f~~~~~a~~h~~~GakkViis~p-s~d~p~~V~gvN 138 (218)
.|++|.....-...+-.+.|++-|+ +|+++. ++|+.+-|--+|
T Consensus 231 e~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~P~dvd~~vk~~~ 274 (351)
T COG5322 231 EDILVWVASMPKGVEIFPQHLKPGC--LIVDGGYPKDVDTSVKNVG 274 (351)
T ss_pred cceEEEEeecCCCceechhhccCCe--EEEcCCcCcccccccccCC
Confidence 3555555554555667789999999 999997 566555665555
No 356
>PRK07236 hypothetical protein; Provisional
Probab=56.39 E-value=18 Score=32.77 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=24.8
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
|+..+|.|+|-|..|-..+..|... +++++.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~ 35 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVF 35 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEE
Confidence 5678999999999998888877664 4555544
No 357
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=56.12 E-value=18 Score=33.85 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=23.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCc-eEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~-~vvaIn 34 (218)
.+|+|+|.|.+|+.+++.+... ++ +++.++
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~-G~~~V~v~~ 213 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEK-GVRKITVAN 213 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHC-CCCeEEEEe
Confidence 5899999999999999988765 45 444443
No 358
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=56.10 E-value=1.6e+02 Score=26.89 Aligned_cols=34 Identities=15% Similarity=-0.007 Sum_probs=24.0
Q ss_pred CCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeC
Q 027805 92 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (218)
Q Consensus 92 ~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ 125 (218)
.++|+|||++|.-.+.+.+-..++.+-+.+++.+
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 3789999999876666666677765555555544
No 359
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=55.94 E-value=94 Score=27.40 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=22.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCc-eEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~-~vvaIn 34 (218)
-+|.|+|.|.+|+..++.+... +. .++++.
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~ 204 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAA-GASKIIVSE 204 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEEC
Confidence 3788999999999988877765 46 555553
No 360
>PLN02858 fructose-bisphosphate aldolase
Probab=55.71 E-value=16 Score=39.71 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=25.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+||++|+|.+|..+++++... ++++.+- |.
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~-G~~V~v~-dr 355 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKS-NFSVCGY-DV 355 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHC-CCEEEEE-eC
Confidence 6899999999999999999876 4676654 44
No 361
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=55.68 E-value=30 Score=29.91 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=50.9
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (218)
+|-|+|.|.+|+..++.+... +..++++.. +.+...++-+ +|. . ..++.+.... .+. .
T Consensus 168 ~vli~g~g~vG~~~~~la~~~-G~~V~~~~~---s~~~~~~~~~----~g~-~-----------~~~~~~~~~~-~~~-~ 225 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAM-GAAVIAVDI---KEEKLELAKE----LGA-D-----------EVLNSLDDSP-KDK-K 225 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHc-CCEEEEEcC---CHHHHHHHHH----hCC-C-----------EEEcCCCcCH-HHH-H
Confidence 678889999999888877655 477776644 2333323321 110 0 0011000000 000 0
Q ss_pred CCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEE
Q 027805 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (218)
Q Consensus 85 ~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkVii 123 (218)
...+ ..++|+|+||+|.-...+.+...++.|.+-+.+
T Consensus 226 ~~~~--~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 226 AAGL--GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHhc--CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 0011 237899999998655566677888777643333
No 362
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.50 E-value=20 Score=33.11 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=20.7
Q ss_pred CccEEEeeCCcccCHHhHHHHHhCCC
Q 027805 93 GAEYVVESTGVFTDKDKAAAHLKGGA 118 (218)
Q Consensus 93 gvDiVve~tg~f~~~~~a~~h~~~Ga 118 (218)
..|++|||||...+.+.+-..++.|=
T Consensus 242 ~~d~~~dCsG~~~~~~aai~a~r~gG 267 (354)
T KOG0024|consen 242 QPDVTFDCSGAEVTIRAAIKATRSGG 267 (354)
T ss_pred CCCeEEEccCchHHHHHHHHHhccCC
Confidence 48999999999999887766666543
No 363
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=55.48 E-value=23 Score=37.21 Aligned_cols=157 Identities=14% Similarity=0.175 Sum_probs=78.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCc------eEEEEeCCCcChhhhhh--heeeccccccccCccEEEeCCceE-EECC-
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDV------ELVAVNDPFITTDYMTY--MFKYDSVHGQWKHHELKVKDDKTL-LFGE- 73 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~------~vvaInd~~~~~~~~ay--l~kydS~~G~~~~~~v~~~~~~~l-~i~g- 73 (218)
.||.|+|.|-+|-.+++++... ++ +++.+-+-..+.+.+-. ||..+. -|+.. .++-. . .+ .+|-
T Consensus 420 ~kVlvvGaGGlG~e~lknLal~-Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~d-IGk~K-a~vaa--~-~l~~~Np~ 493 (1008)
T TIGR01408 420 LNIFLVGCGAIGCEMLKNFALM-GVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHH-IGKPK-SYTAA--D-ATLKINPQ 493 (1008)
T ss_pred CcEEEECCChHHHHHHHHHHHh-CCCcCCCCeEEEECCCEecccccCcCcCCChhH-cCcHH-HHHHH--H-HHHHHCCC
Confidence 6899999999999999998754 34 44444332233333333 332222 34432 22110 0 01 1221
Q ss_pred EEEEEEeec-CC--CCC---C-ccCCCccEEEeeCCcccCHHhHH-HHHhCCCCEEEEeCCCC----CCCeEEeecCccc
Q 027805 74 KPVTVFGVR-NP--EEI---P-WAETGAEYVVESTGVFTDKDKAA-AHLKGGAKKVIISAPSK----DAPMFVVGVNENE 141 (218)
Q Consensus 74 ~~i~v~~~~-~p--~~i---~-W~~~gvDiVve~tg~f~~~~~a~-~h~~~GakkViis~ps~----d~p~~V~gvN~~~ 141 (218)
-.|+...++ ++ +++ . |. +.|+|++|...+.++.+.. .....+. .+|.+.+. .+-+++++.- +.
T Consensus 494 v~I~~~~~~v~~~~e~i~~~~f~~--~~dvVi~alDn~~aR~~vn~~c~~~~i--Pli~~gt~G~~G~v~v~ip~~t-e~ 568 (1008)
T TIGR01408 494 IKIDAHQNRVGPETETIFNDEFYE--KLDVVINALDNVEARRYVDSRCLAFLK--PLLESGTLGTKGNTQVVVPHLT-ES 568 (1008)
T ss_pred CEEEEEEeecChhhhhhhhHHHhh--CCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEeccCceeeEEEEeCCCc-CC
Confidence 122222221 11 111 1 43 7899999999876664433 3334444 45555542 2446666653 33
Q ss_pred cCC--CCCEEEcCChh--------hhhHHHHHHHHHhhcC
Q 027805 142 YKP--ELNIVSNASCT--------TNCLAPLAKVIHDKFG 171 (218)
Q Consensus 142 ~~~--~~~IIs~aSCt--------T~~Lap~lk~L~~~fg 171 (218)
|.. ...-.+.|.|| -.|+.=.-...+..|+
T Consensus 569 y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~ 608 (1008)
T TIGR01408 569 YGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFS 608 (1008)
T ss_pred CCCCCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHH
Confidence 422 11112445555 4666666666666666
No 364
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=54.98 E-value=19 Score=30.13 Aligned_cols=30 Identities=37% Similarity=0.454 Sum_probs=25.7
Q ss_pred EEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 5 kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
+|-|.| +|.+|+.+++.+..+ +.++++++-
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r 32 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLAR-GHEVRAAVR 32 (275)
T ss_pred eEEEEecccchHHHHHHHHHhC-CCEEEEEEe
Confidence 788999 999999999999988 577777764
No 365
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=54.95 E-value=32 Score=30.09 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=49.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCce-EEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~-vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
-+|.|+|-|.+|+.+++.+... +.+ ++++.. +.+...++.++.. . ..++.+.....+.-
T Consensus 167 ~~VlV~g~g~vg~~~~~la~~~-g~~~v~~~~~---s~~~~~~~~~~g~-----~-----------~~~~~~~~~~~~~i 226 (343)
T cd08235 167 DTVLVIGAGPIGLLHAMLAKAS-GARKVIVSDL---NEFRLEFAKKLGA-----D-----------YTIDAAEEDLVEKV 226 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEECC---CHHHHHHHHHhCC-----c-----------EEecCCccCHHHHH
Confidence 3788999999999988866554 577 655533 3333333322211 0 11111100000000
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEE
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkVii 123 (218)
-...+ ..++|+|++|+|.....+.+..+++.+.+-+.+
T Consensus 227 -~~~~~--~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 227 -RELTD--GRGADVVIVATGSPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred -HHHhC--CcCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 00011 136899999998644445556777766643333
No 366
>PRK07326 short chain dehydrogenase; Provisional
Probab=54.74 E-value=24 Score=29.05 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=25.3
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.++-|.| .|.||+.+++.+.+. +.+|+++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-GYKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-CCEEEEee
Confidence 5799999 899999999999876 57777764
No 367
>PRK14852 hypothetical protein; Provisional
Probab=54.47 E-value=10 Score=39.68 Aligned_cols=99 Identities=13% Similarity=0.237 Sum_probs=50.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC-CcChhhhhhheee-ccccccccCccEEEeCCceEEECC-EEEEEE
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKY-DSVHGQWKHHELKVKDDKTLLFGE-KPVTVF 79 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~-~~~~~~~ayl~ky-dS~~G~~~~~~v~~~~~~~l~i~g-~~i~v~ 79 (218)
..||+|+|+|=+|..++..+...+ +.-+.|.|. ..+...+-.-+-| .+.-|+.. .++- ..+-..+|- -.|+++
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraG-VG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~K-aeva--a~~l~~INP~v~I~~~ 407 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTG-IGNFNLADFDAYSPVNLNRQYGASIASFGRGK-LDVM--TERALSVNPFLDIRSF 407 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcC-CCeEEEEcCCEecccccccccCCChhhCCChH-HHHH--HHHHHHHCCCCeEEEE
Confidence 368999999999999999887653 444444443 1122333221111 12234332 1110 110013442 345554
Q ss_pred eec-CCCCCC-ccCCCccEEEeeCCcccC
Q 027805 80 GVR-NPEEIP-WAETGAEYVVESTGVFTD 106 (218)
Q Consensus 80 ~~~-~p~~i~-W~~~gvDiVve~tg~f~~ 106 (218)
.+. ++++++ + -.++|+||||+..|..
T Consensus 408 ~~~I~~en~~~f-l~~~DiVVDa~D~~~~ 435 (989)
T PRK14852 408 PEGVAAETIDAF-LKDVDLLVDGIDFFAL 435 (989)
T ss_pred ecCCCHHHHHHH-hhCCCEEEECCCCccH
Confidence 332 233332 1 1389999999998754
No 368
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=54.36 E-value=28 Score=28.09 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=25.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
..||.|.|.|++|+..++.+...+ .+++...+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~ 51 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDE 51 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT--EEEEEES
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC-CEEEeccC
Confidence 379999999999999999888774 78777654
No 369
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=54.23 E-value=20 Score=33.05 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=25.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.++-|.|+|++|+.+++.+.+. +.+++.|.
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~-~~~v~vid 261 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE-GYSVKLIE 261 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEE
Confidence 5899999999999999987765 57777774
No 370
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=54.12 E-value=19 Score=32.55 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=23.8
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 5 kvgInG~-GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
||+|+|. |.||..++..+...+-..-+.+.|.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di 33 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDI 33 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecC
Confidence 7999998 9999999888876654333444454
No 371
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=54.05 E-value=46 Score=29.87 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=24.3
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEe
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
+-||-|.| .|.+|+.+++++.+.+.-.+..||
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVn 40 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVT 40 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEEC
Confidence 36899999 899999999999876422444555
No 372
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=54.04 E-value=26 Score=28.63 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=25.7
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
..+|-|.| .|.||+.+++.+.++ +.+|+.+.-
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~-g~~v~~~~r 37 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAAD-GAKVVIYDS 37 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeC
Confidence 36899999 899999999999877 456666653
No 373
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=53.99 E-value=43 Score=29.09 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=22.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCce-EEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~-vvaIn 34 (218)
-+|.|+|.|.+|+.+++.+... +.. ++++.
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~ 191 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLN-GASRVTVAE 191 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEEC
Confidence 3788999999999988877765 465 44443
No 374
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=53.81 E-value=41 Score=29.31 Aligned_cols=32 Identities=16% Similarity=0.410 Sum_probs=24.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
-+|.|.|-|.+|...++.+.......++++..
T Consensus 169 ~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~ 200 (340)
T cd05284 169 STVVVIGVGGLGHIAVQILRALTPATVIAVDR 200 (340)
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeC
Confidence 36899998889999888887664477777654
No 375
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=53.43 E-value=56 Score=28.15 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=51.2
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 5 kvgInG~-GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
+|-|+|. |.+|...++.+... +++++++... .+...++.+ .|- . .+++.+... .+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~-g~~v~~~~~~---~~~~~~~~~----~g~-~-----------~v~~~~~~~---~~~ 205 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKL-GYEVVASTGK---ADAADYLKK----LGA-K-----------EVIPREELQ---EES 205 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHC-CCeEEEEecC---HHHHHHHHH----cCC-C-----------EEEcchhHH---HHH
Confidence 7889996 99999988877665 5777777543 222222211 110 0 112111100 000
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEe
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis 124 (218)
... +...++|+|+||+|. ...+.+..++..+..-+.+.
T Consensus 206 ~~~--~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 206 IKP--LEKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred HHh--hccCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEEe
Confidence 011 112368999999997 45566667776665444443
No 376
>PLN00198 anthocyanidin reductase; Provisional
Probab=53.35 E-value=24 Score=31.18 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=26.0
Q ss_pred CccEEEEEc-cChhHHHHHHHHHcCCCceEEEEe
Q 027805 2 GKVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 2 ~~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
++.+|-|-| .|.||+.+++.+++.. .+|+++.
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~ 40 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTV 40 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 347899999 9999999999998874 5776553
No 377
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=53.12 E-value=37 Score=29.00 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=23.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCce-EEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~-vvaInd 35 (218)
-+|.|+|.|.+|...++.+... +++ ++++..
T Consensus 131 ~~vlI~g~g~vg~~~~~la~~~-g~~~v~~~~~ 162 (312)
T cd08269 131 KTVAVIGAGFIGLLFLQLAAAA-GARRVIAIDR 162 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEECC
Confidence 3688999999999988877665 577 666654
No 378
>PRK08291 ectoine utilization protein EutC; Validated
Probab=53.03 E-value=28 Score=31.40 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=27.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+++|+|.|..|+.+++++....+++-+.|.+.
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R 165 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWAR 165 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 589999999999999998875445777778776
No 379
>PLN00203 glutamyl-tRNA reductase
Probab=52.82 E-value=18 Score=35.09 Aligned_cols=32 Identities=22% Similarity=0.549 Sum_probs=24.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
.+|+|+|.|.+|+.+++.+...+--+|+.+|-
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR 298 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR 298 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 68999999999999999998764224555543
No 380
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=52.77 E-value=8.5 Score=37.04 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=18.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELV 31 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vv 31 (218)
.+|+|+|+|.+|+..+.++..+ +++++
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdS-GvnVv 63 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDS-GLDIS 63 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccc-cceeE
Confidence 6999999999999555444333 35444
No 381
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=52.64 E-value=1.3e+02 Score=26.93 Aligned_cols=30 Identities=13% Similarity=0.368 Sum_probs=22.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCc-eEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~-~vvaIn 34 (218)
-+|.|+|.|.+|...++.+... +. .++++.
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~ 218 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAA-GASRIIGID 218 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEe
Confidence 4788999999999988877665 45 466653
No 382
>PRK15076 alpha-galactosidase; Provisional
Probab=52.55 E-value=13 Score=35.04 Aligned_cols=13 Identities=31% Similarity=0.158 Sum_probs=11.7
Q ss_pred cEEEEEccChhHH
Q 027805 4 VKIGINGFGRIGR 16 (218)
Q Consensus 4 ~kvgInG~GrIGr 16 (218)
+||+|+|.|.+|.
T Consensus 2 ~KIaIIGaGsvg~ 14 (431)
T PRK15076 2 PKITFIGAGSTVF 14 (431)
T ss_pred cEEEEECCCHHHh
Confidence 5999999999984
No 383
>smart00575 ZnF_PMZ plant mutator transposase zinc finger.
Probab=52.33 E-value=3.9 Score=23.66 Aligned_cols=12 Identities=42% Similarity=0.839 Sum_probs=9.5
Q ss_pred ccCcccccccCC
Q 027805 206 WKTDWYGFPCTH 217 (218)
Q Consensus 206 ~~~~~~~~~~~~ 217 (218)
+.++-+|+||.|
T Consensus 6 ~~~~~~gipC~H 17 (28)
T smart00575 6 RKFQLSGIPCRH 17 (28)
T ss_pred CCcccCCccHHH
Confidence 356778999987
No 384
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=51.73 E-value=42 Score=29.43 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=24.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
-+|.|+|.|.+|+.+++.+... +++++++..
T Consensus 167 ~~vlV~g~g~vg~~~~~~a~~~-G~~vi~~~~ 197 (345)
T cd08260 167 EWVAVHGCGGVGLSAVMIASAL-GARVIAVDI 197 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEeC
Confidence 3789999999999988877655 578777754
No 385
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=51.45 E-value=32 Score=29.78 Aligned_cols=95 Identities=18% Similarity=0.316 Sum_probs=51.4
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
-+|-|+| .|.+|...++.+... +.+++++... .+...++.+ +|. + -+++.+.-.+ .+
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s---~~~~~~l~~----~Ga----------~--~vi~~~~~~~-~~- 202 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGS---DDKVAWLKE----LGF----------D--AVFNYKTVSL-EE- 202 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCC---HHHHHHHHH----cCC----------C--EEEeCCCccH-HH-
Confidence 3688999 799999988877665 5788777643 233333322 221 0 0111100000 00
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEE
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkVii 123 (218)
.... +...++|+|+|++|. ...+.+..+++.+.+-+.+
T Consensus 203 ~v~~--~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 203 ALKE--AAPDGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred HHHH--HCCCCcEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence 0000 112379999999997 4556666777666533333
No 386
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=51.32 E-value=21 Score=29.42 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=21.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.++.|.|||.+|+-+++.+.... .. |.|.|.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~G-a~-V~V~e~ 54 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLG-AR-VTVTEI 54 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT--E-EEEE-S
T ss_pred CEEEEeCCCcccHHHHHHHhhCC-CE-EEEEEC
Confidence 58999999999999999998764 33 345554
No 387
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=50.95 E-value=23 Score=30.95 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=23.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCc-eEEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~-~vvaI 33 (218)
-+|.|+|.|.+|+.+++.+... ++ .++++
T Consensus 169 ~~vlI~g~g~vg~~~~~~a~~~-g~~~v~~~ 198 (344)
T cd08284 169 DTVAVIGCGPVGLCAVLSAQVL-GAARVFAV 198 (344)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCceEEEE
Confidence 3788999999999988887766 45 67777
No 388
>PRK06141 ornithine cyclodeaminase; Validated
Probab=50.91 E-value=31 Score=30.89 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=24.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+|+|+|+|..|+.+++++.....++-+.|.+.
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R 158 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGR 158 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 589999999999999997765333554555554
No 389
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=50.83 E-value=29 Score=29.36 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=25.9
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
+||-|.| .|.||+.+++.+++. +.+|+++..
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~-g~~V~~~~R 49 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAK-GFAVKAGVR 49 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhC-CCEEEEEec
Confidence 6899999 799999999999876 477777653
No 390
>PRK05586 biotin carboxylase; Validated
Probab=50.78 E-value=23 Score=33.23 Aligned_cols=33 Identities=30% Similarity=0.235 Sum_probs=28.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
..||+|.|-|.+|..+++++.+. +++++++.++
T Consensus 2 ~kkvli~g~G~~~~~~~~aa~~l-G~~~v~v~~~ 34 (447)
T PRK05586 2 FKKILIANRGEIAVRIIRACREM-GIETVAVYSE 34 (447)
T ss_pred cceEEEECCcHHHHHHHHHHHHc-CCcEEEEcCh
Confidence 36999999999999999999877 5888888543
No 391
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=50.73 E-value=28 Score=31.14 Aligned_cols=33 Identities=12% Similarity=-0.002 Sum_probs=28.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.++||+|.|..|+.+++++.....++=|-|.+.
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r 150 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSR 150 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC
Confidence 589999999999999999987666888888877
No 392
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=50.65 E-value=37 Score=29.72 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=22.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
-+|.|+|.|.+|...++.+... +.+++.+.+
T Consensus 163 ~~VlI~g~g~vg~~~~~la~~~-G~~~v~~~~ 193 (341)
T cd08262 163 EVALVIGCGPIGLAVIAALKAR-GVGPIVASD 193 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEEC
Confidence 3788999999999887776655 466555544
No 393
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=50.59 E-value=27 Score=31.08 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=21.1
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEE
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELV 31 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vv 31 (218)
||+|+|.|.+|..++..+.+.. .+|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~ 27 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVN 27 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEE
Confidence 8999999999999988887653 4444
No 394
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=50.26 E-value=38 Score=30.34 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=23.8
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~-GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
-+|.|+|. |.+|...++.+... +.+++++..
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~ 191 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAG 191 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHc-CCEEEEEcC
Confidence 37889996 99999988877655 577777643
No 395
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=50.15 E-value=40 Score=23.37 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=22.4
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
||.|+|-|.+|-.++..+.... .+++-|
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli 28 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLI 28 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEE
Confidence 6899999999999999887763 455444
No 396
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=50.12 E-value=47 Score=29.21 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=23.7
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~-GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
-+|-|+|. |.+|...++.+... +++++++..
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~ 184 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAG 184 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHc-CCEEEEEeC
Confidence 37889995 99999988877655 577777654
No 397
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=49.96 E-value=34 Score=30.86 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=27.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+++|+|.|..|+.+++++....+++-+.|.+.
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R 162 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWAR 162 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECC
Confidence 489999999999999999975556777777776
No 398
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=49.84 E-value=28 Score=32.77 Aligned_cols=31 Identities=19% Similarity=0.502 Sum_probs=27.0
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
+||-|-| .|.||+.+++.++++ +.+|+++..
T Consensus 121 mkILVTGatGFIGs~Lv~~Ll~~-G~~V~~ldr 152 (436)
T PLN02166 121 LRIVVTGGAGFVGSHLVDKLIGR-GDEVIVIDN 152 (436)
T ss_pred CEEEEECCccHHHHHHHHHHHHC-CCEEEEEeC
Confidence 7999999 899999999999887 478888753
No 399
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=49.73 E-value=53 Score=30.11 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
-.+||+|.|..++..++++...-+++=+-|.+.
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r 163 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSR 163 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcC
Confidence 368999999999999999986656777777776
No 400
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=49.73 E-value=83 Score=27.29 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=24.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.++.|.|.|.+|+.+++++.+.. .+++..+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g-~~v~v~~ 147 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD-CNVIIAN 147 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 47999999999999999998764 5666554
No 401
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=49.56 E-value=37 Score=30.49 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=21.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCce-EEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~-vvaI 33 (218)
-+|.|+|.|.+|...++.+... +.. ++++
T Consensus 185 ~~vlI~g~g~vG~~a~~~a~~~-G~~~v~~~ 214 (365)
T cd05279 185 STCAVFGLGGVGLSVIMGCKAA-GASRIIAV 214 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEE
Confidence 3788999999999988877665 454 4443
No 402
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=49.09 E-value=24 Score=30.30 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=24.4
Q ss_pred EEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 5 kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
+|.|.| +|.+|+.+++.|.+. +.+|.++.-
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-SVPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-CCcEEEEeC
Confidence 478999 899999999998876 477777653
No 403
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=49.03 E-value=79 Score=27.98 Aligned_cols=31 Identities=10% Similarity=0.255 Sum_probs=23.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCc-eEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~-~vvaInd 35 (218)
-+|-|.|.|.+|+..++.+... +. .++++..
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~ 210 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDG 210 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcC
Confidence 3688999999999988877665 46 7776643
No 404
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=48.92 E-value=78 Score=29.65 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=24.3
Q ss_pred cEEEEEccChhHHH-HHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRL-VARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~-~~r~~~~~~~~~vvaInd~ 36 (218)
.||.|+|+|..|.. ++|.+... +.+|. ++|.
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~-G~~V~-~~D~ 39 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNL-GYKVS-GSDL 39 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhC-CCeEE-EECC
Confidence 58999999999999 68887776 46654 5664
No 405
>PLN02702 L-idonate 5-dehydrogenase
Probab=48.86 E-value=53 Score=29.27 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=50.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee-c
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV-R 82 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~-~ 82 (218)
-+|.|+|.|.+|...++.+... +...+.+.+. +.+....+.+ +|. . . .+.++.+.....+. .
T Consensus 183 ~~vlI~g~g~vG~~~~~~a~~~-G~~~v~~~~~--~~~~~~~~~~----~g~-~-~--------~~~~~~~~~~~~~~~~ 245 (364)
T PLN02702 183 TNVLVMGAGPIGLVTMLAARAF-GAPRIVIVDV--DDERLSVAKQ----LGA-D-E--------IVLVSTNIEDVESEVE 245 (364)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEECC--CHHHHHHHHH----hCC-C-E--------EEecCcccccHHHHHH
Confidence 3788999999999888877665 4554444443 2233322211 221 0 0 01111100000000 0
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEE
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkVii 123 (218)
...+.. . .++|+|+||+|.-...+.+..+++.+.+-+.+
T Consensus 246 ~~~~~~-~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 246 EIQKAM-G-GGIDVSFDCVGFNKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred HHhhhc-C-CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 000011 1 26899999999644566677788776643333
No 406
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=48.84 E-value=29 Score=30.36 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=25.4
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
|||-|.| .|.||+.+++.+.+. +.+|+++.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHC-CCeEEEEe
Confidence 3789999 899999999999876 47888775
No 407
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=48.63 E-value=37 Score=30.02 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=21.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCce-EEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~-vvaI 33 (218)
-+|-|+|.|.+|...++.+... +.+ ++++
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~ 197 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLR-GAGRIIAV 197 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEE
Confidence 4788999999999988877655 464 4544
No 408
>PRK05086 malate dehydrogenase; Provisional
Probab=48.54 E-value=30 Score=31.12 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=22.0
Q ss_pred cEEEEEcc-ChhHHHHHHHHHc-CCCceEEEEeC
Q 027805 4 VKIGINGF-GRIGRLVARVILQ-RDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~-GrIGr~~~r~~~~-~~~~~vvaInd 35 (218)
+||+|+|. |.||+.++..+.. .+....+.+.|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d 34 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYD 34 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEe
Confidence 49999996 9999999887754 33333333434
No 409
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=48.40 E-value=2.1e+02 Score=25.79 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=22.9
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~-GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
-+|.|.|. |.+|...++.+... +++++++.
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~-G~~vv~~~ 225 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAA-GANPVAVV 225 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCeEEEEe
Confidence 37889995 99999888777655 57777664
No 410
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=48.40 E-value=29 Score=34.03 Aligned_cols=32 Identities=19% Similarity=0.487 Sum_probs=26.8
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 2 ~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
+..||||+|-|..|+.+++++.+. +++++.+.
T Consensus 21 ~~k~IgIIGgGqlg~mla~aA~~l-G~~Vi~ld 52 (577)
T PLN02948 21 SETVVGVLGGGQLGRMLCQAASQM-GIKVKVLD 52 (577)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 357999999999999999988876 58877763
No 411
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=48.29 E-value=30 Score=32.34 Aligned_cols=33 Identities=30% Similarity=0.252 Sum_probs=28.5
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
|| .||+|.|-|.++..+++++.+. +++++++..
T Consensus 1 ~~-kkili~g~g~~~~~~~~aa~~l-G~~vv~~~~ 33 (449)
T TIGR00514 1 ML-DKILIANRGEIALRILRACKEL-GIKTVAVHS 33 (449)
T ss_pred Cc-ceEEEeCCCHHHHHHHHHHHHc-CCeEEEEEC
Confidence 54 6999999999999999999877 599999853
No 412
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=48.26 E-value=25 Score=31.58 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRD 26 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~ 26 (218)
+||.|+|.|.||..+.-.+.+.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 49999999999999888887765
No 413
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=47.91 E-value=61 Score=28.35 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=22.9
Q ss_pred EEEEEccChhHHHHHHHHHcCCCce-EEEEeC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~-vvaInd 35 (218)
+|.|+|.|.+|+..++.+... +++ ++++..
T Consensus 162 ~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~ 192 (343)
T cd08236 162 TVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDI 192 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCEEEEEcC
Confidence 788999999999988877654 465 666654
No 414
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=47.86 E-value=33 Score=31.56 Aligned_cols=32 Identities=34% Similarity=0.579 Sum_probs=26.6
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
.+||-|.| .|.||+.+++.+.+. +.+|+++.-
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~-G~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRR-GYNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEEe
Confidence 36899999 899999999999876 477777753
No 415
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.64 E-value=27 Score=33.63 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=27.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceE-EEEeCCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVEL-VAVNDPF 37 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~v-vaInd~~ 37 (218)
.+|+|+|-|.-|-.++..|+..+..+- ++|-++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~ 36 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPR 36 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccc
Confidence 699999999999999999998765444 7776663
No 416
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=47.60 E-value=30 Score=31.07 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=26.9
Q ss_pred CCccEEEEEccChhHHHHHHHHHcC--CCceEEEEeC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQR--DDVELVAVND 35 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~--~~~~vvaInd 35 (218)
|++.+|.|+|.|..|-..+..+... .++.++.+-.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 7778999999999998887777554 2577666643
No 417
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.38 E-value=40 Score=27.51 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=25.2
Q ss_pred CccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 2 GKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 2 ~~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
++.+|-|.| .|.||+.+++.+.+.. .+++.+..
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g-~~v~~~~~ 38 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAG-ADVVVHYR 38 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeC
Confidence 346899999 8999999999998764 46555443
No 418
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=47.38 E-value=23 Score=33.70 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=28.6
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
|++..||++|+|.+|+.++.+..++ ++.|..-|-.
T Consensus 1 ~~~~~iGviGLaVMG~NLaLNi~~~-G~~VavyNRt 35 (473)
T COG0362 1 MMKADIGVIGLAVMGSNLALNIADH-GYTVAVYNRT 35 (473)
T ss_pred CCccceeeEehhhhhHHHHHHHHhc-CceEEEEeCC
Confidence 6678999999999999999888877 4776666653
No 419
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=46.70 E-value=29 Score=30.43 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=26.5
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
|||-|.| .|.+|+.+.+.+.++ +.++++++-.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~~r~ 33 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER-GYEVIATSRS 33 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT-SEEEEEESTT
T ss_pred CEEEEECCCCHHHHHHHHHHhhC-CCEEEEeCch
Confidence 5999999 899999999887764 6889988533
No 420
>PRK09126 hypothetical protein; Provisional
Probab=46.01 E-value=31 Score=31.04 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=26.4
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
||...|.|+|-|..|-..+..+... +++++-+-
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E 33 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGS-GLKVTLIE 33 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhC-CCcEEEEe
Confidence 7788999999999998888877664 56666553
No 421
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=45.81 E-value=33 Score=33.92 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=27.8
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
+||-|-| .|.||+.+++.+++..+.+|+++.-
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 6899999 8999999999998765689998864
No 422
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=45.57 E-value=32 Score=30.45 Aligned_cols=31 Identities=39% Similarity=0.490 Sum_probs=24.4
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
.||-|.| .|.||+.+++.+.+.. .+++.+.+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g-~~~v~~~~ 33 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET-SDAVVVVD 33 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC-CCEEEEEe
Confidence 4899999 8999999999998774 45454444
No 423
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=45.49 E-value=43 Score=24.77 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=26.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
..+|-|+|.|.+|..-++.+++.+ .+++.+...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAG-AKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCc
Confidence 368999999999999999888874 777777653
No 424
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=45.36 E-value=72 Score=27.90 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=23.8
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCc-eEEEEeC
Q 027805 4 VKIGINGF-GRIGRLVARVILQRDDV-ELVAVND 35 (218)
Q Consensus 4 ~kvgInG~-GrIGr~~~r~~~~~~~~-~vvaInd 35 (218)
-+|-|+|. |.+|...++.+... +. +++++..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~ 188 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICG 188 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcC
Confidence 37889995 99999988877665 46 6777754
No 425
>PLN02206 UDP-glucuronate decarboxylase
Probab=45.27 E-value=31 Score=32.47 Aligned_cols=31 Identities=16% Similarity=0.464 Sum_probs=26.8
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
+||-|.| .|.||+.+++.+++. +.+|+++..
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~-G~~V~~ld~ 151 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMAR-GDSVIVVDN 151 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHC-cCEEEEEeC
Confidence 7999999 899999999999887 478887754
No 426
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=44.90 E-value=33 Score=31.01 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC
Q 027805 3 KVKIGINGFGRIGRLVARVILQRD 26 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~ 26 (218)
++||+|+|.|.+|..++..+.+..
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g 30 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG 30 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC
Confidence 369999999999999998887664
No 427
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=44.80 E-value=40 Score=27.74 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=26.2
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
..+|-|.| .|.+|+.+++.+.++ +.+|+.+.-
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~-g~~V~~~~r 38 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAAD-GAEVIVVDI 38 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC-CCEEEEEeC
Confidence 35799999 899999999999877 467777754
No 428
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=44.46 E-value=39 Score=30.71 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=26.5
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEe
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+||-|.| .|.||+.+++.+.+. +.+|+++.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~-G~~V~~v~ 52 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAE-GHYIIASD 52 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhC-CCEEEEEE
Confidence 47999999 799999999999876 47888775
No 429
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=44.23 E-value=35 Score=35.12 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=29.2
Q ss_pred CCccEEEEEccChhHHHHHHHHHcC---CCceEEEEeCC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQR---DDVELVAVNDP 36 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~---~~~~vvaInd~ 36 (218)
|+++||.|+|-|..|...++.+.+. ++++|+-|...
T Consensus 1 m~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e 39 (847)
T PRK14989 1 MSKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEE 39 (847)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 6667999999999999888888643 46889988653
No 430
>PLN02778 3,5-epimerase/4-reductase
Probab=43.99 E-value=47 Score=29.19 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=24.0
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEE
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVA 32 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vva 32 (218)
++||-|.| .|.||+.+++.+.+++ .+++.
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~~ 38 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQG-IDFHY 38 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCC-CEEEE
Confidence 47999999 8999999999998774 56653
No 431
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=43.84 E-value=31 Score=29.45 Aligned_cols=30 Identities=33% Similarity=0.575 Sum_probs=24.6
Q ss_pred EEEEEc-cChhHHHHHHHHHcCC-CceEEEEe
Q 027805 5 KIGING-FGRIGRLVARVILQRD-DVELVAVN 34 (218)
Q Consensus 5 kvgInG-~GrIGr~~~r~~~~~~-~~~vvaIn 34 (218)
||-|.| .|.||+.+++.+++.+ ..+++++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 578899 8999999999998764 47888764
No 432
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=43.73 E-value=94 Score=26.86 Aligned_cols=97 Identities=14% Similarity=0.209 Sum_probs=52.5
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
-+|.|+| .|.+|+..++.+......+++++.+. .+...++.+ +|- + ..++.+. .. .+
T Consensus 151 ~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~---~~~~~~~~~----~g~----------~--~~~~~~~-~~-~~- 208 (336)
T cd08252 151 KTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASR---PESIAWVKE----LGA----------D--HVINHHQ-DL-AE- 208 (336)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCC---hhhHHHHHh----cCC----------c--EEEeCCc-cH-HH-
Confidence 3788999 69999998887766643787777553 222222211 110 0 1122110 00 00
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEe
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis 124 (218)
....... .++|++++|+|.-...+.+..++..+.+-+.++
T Consensus 209 ~i~~~~~--~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g 248 (336)
T cd08252 209 QLEALGI--EPVDYIFCLTDTDQHWDAMAELIAPQGHICLIV 248 (336)
T ss_pred HHHhhCC--CCCCEEEEccCcHHHHHHHHHHhcCCCEEEEec
Confidence 0001111 379999999986445566667777665333343
No 433
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=42.94 E-value=60 Score=28.58 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=47.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCc-eEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeec
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~-~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (218)
-+|.|+|.|.+|...++.+... +. .++.+. . +.+...++-++ |- ..+++.+.......
T Consensus 177 ~~vlI~g~g~vg~~~~~~a~~~-G~~~v~~~~-~--~~~~~~~~~~~----g~------------~~~~~~~~~~~~~~- 235 (350)
T cd08240 177 EPVVIIGAGGLGLMALALLKAL-GPANIIVVD-I--DEAKLEAAKAA----GA------------DVVVNGSDPDAAKR- 235 (350)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCeEEEEe-C--CHHHHHHHHHh----CC------------cEEecCCCccHHHH-
Confidence 3688999999999888877655 45 444443 2 22333233211 10 01122111111000
Q ss_pred CCCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCC
Q 027805 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (218)
Q Consensus 83 ~p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~Ga 118 (218)
..+. +.. ++|+++|++|.....+.+..++..+.
T Consensus 236 -~~~~-~~~-~~d~vid~~g~~~~~~~~~~~l~~~g 268 (350)
T cd08240 236 -IIKA-AGG-GVDAVIDFVNNSATASLAFDILAKGG 268 (350)
T ss_pred -HHHH-hCC-CCcEEEECCCCHHHHHHHHHHhhcCC
Confidence 0000 122 68999999996555666677776665
No 434
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=42.75 E-value=43 Score=29.32 Aligned_cols=31 Identities=32% Similarity=0.312 Sum_probs=24.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.++.|.|.|.+|+.+++++...+-.+|+.+|
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~ 154 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVN 154 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 5799999999999999999876424555444
No 435
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=42.35 E-value=69 Score=28.54 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=22.8
Q ss_pred EEEEEccChhHHHHHHHHHcCCCce-EEEEeC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~-vvaInd 35 (218)
+|.|+|.|.+|+.+++.+... +++ ++++..
T Consensus 190 ~VlI~g~g~vG~~~~~lak~~-G~~~vi~~~~ 220 (367)
T cd08263 190 TVAVIGVGGVGSSAIQLAKAF-GASPIIAVDV 220 (367)
T ss_pred EEEEECCcHHHHHHHHHHHHc-CCCeEEEEeC
Confidence 688999999999988887665 466 665543
No 436
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=42.30 E-value=73 Score=27.76 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=23.9
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
-+|-|+| .|.+|...++.+... +.+++++..
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~ 171 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAG 171 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeC
Confidence 3788999 699999988877655 577777654
No 437
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=42.05 E-value=41 Score=30.94 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=24.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.||-|+|.|-+|+++++.+.+..--+++..|
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~n 205 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCS 205 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCCEEEEEc
Confidence 5899999999999999999887423444444
No 438
>PLN02858 fructose-bisphosphate aldolase
Probab=41.94 E-value=29 Score=37.72 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=25.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.|||++|+|.+|..+++++... +.++. +.|.
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~-G~~v~-v~dr 35 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS-GFKVQ-AFEI 35 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC-CCeEE-EEcC
Confidence 5899999999999999999876 47765 4554
No 439
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=41.85 E-value=60 Score=26.61 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=24.3
Q ss_pred cEEEEEccChh-HHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRI-GRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrI-Gr~~~r~~~~~~~~~vvaInd 35 (218)
.||-|+|.|.+ |+.+++.+.+. +.+++.++-
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r 76 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNR-NATVTVCHS 76 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhC-CCEEEEEEC
Confidence 68999999985 98899988876 456665554
No 440
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=41.50 E-value=41 Score=33.10 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=27.8
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcC-CCceEEEEeC
Q 027805 3 KVKIGING-FGRIGRLVARVILQR-DDVELVAVND 35 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~-~~~~vvaInd 35 (218)
.+||-|.| .|.||+.+++.+++. ++.+|+++..
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 46999999 899999999999876 4688888753
No 441
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.44 E-value=41 Score=31.34 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=22.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
+||.|+|+|+.|+.+++.+. . +.++++ .|
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~-G~~V~~-~D 29 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-K-FGGVDI-FD 29 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-C-CCeEEE-Ec
Confidence 37999999999999999887 5 466554 44
No 442
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=41.34 E-value=41 Score=28.98 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=25.1
Q ss_pred EEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 5 kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
||-|.| .|.||+.+++.+.+.+ .+|+++.-
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEEe
Confidence 789999 7999999999998774 67777754
No 443
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=41.19 E-value=39 Score=28.76 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=24.3
Q ss_pred EEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 5 kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
||-|.| .|.||+.+++.+.+. +.+++++.-
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-g~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-GRVVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-CCEEEEeCC
Confidence 578999 899999999999876 467777643
No 444
>PRK09291 short chain dehydrogenase; Provisional
Probab=40.81 E-value=55 Score=27.18 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=25.4
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
.++-|.| .|.||+.+++.+.+. +..++++..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~-G~~v~~~~r 34 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARK-GHNVIAGVQ 34 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 4789999 899999999999876 477777653
No 445
>PRK07577 short chain dehydrogenase; Provisional
Probab=40.68 E-value=56 Score=26.68 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=26.4
Q ss_pred CCccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 1 m~~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
|...++-|.| .|.||+.+++.+.+. +.+++.+.-
T Consensus 1 ~~~k~vlItG~s~~iG~~ia~~l~~~-G~~v~~~~r 35 (234)
T PRK07577 1 MSSRTVLVTGATKGIGLALSLRLANL-GHQVIGIAR 35 (234)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHC-CCEEEEEeC
Confidence 4335788999 899999999998876 467776643
No 446
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.40 E-value=57 Score=29.56 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=25.2
Q ss_pred cEEEEEccC-hhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFG-RIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~G-rIGr~~~r~~~~~~~~~vvaInd 35 (218)
.+|+|+|.| .+|+.+++.+.+. +..++..+.
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~-gatVtv~~~ 191 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQA-HCSVTVVHS 191 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEEEECC
Confidence 589999985 9999999999876 477766654
No 447
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=40.15 E-value=43 Score=29.57 Aligned_cols=29 Identities=38% Similarity=0.504 Sum_probs=23.0
Q ss_pred EEEEEc-cChhHHHHHHHHHcCCCceEEEE
Q 027805 5 KIGING-FGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 5 kvgInG-~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
||-|-| .|.||+.+++.+++.+.-.++++
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~ 31 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNV 31 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEe
Confidence 889999 89999999999988753334444
No 448
>PRK08163 salicylate hydroxylase; Provisional
Probab=39.96 E-value=47 Score=29.90 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=23.3
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 2 ~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
+..+|.|+|-|..|-..+..+... +++++.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~ 33 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ-GIKVKLL 33 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC-CCcEEEE
Confidence 357999999999998888777654 4555444
No 449
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=39.87 E-value=47 Score=28.36 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=26.2
Q ss_pred EEEEEc-cChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 5 KIGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 5 kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
+|-|-| .|.||+.+++.+.+. +.+|+++.-.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~ 33 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDRL 33 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeCC
Confidence 488999 899999999999987 6788888653
No 450
>PLN02572 UDP-sulfoquinovose synthase
Probab=39.58 E-value=46 Score=31.24 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=25.7
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
+||-|-| .|.||+.+++.+.+. +.+|+++.
T Consensus 48 k~VLVTGatGfIGs~Lv~~L~~~-G~~V~~~d 78 (442)
T PLN02572 48 KKVMVIGGDGYCGWATALHLSKR-GYEVAIVD 78 (442)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-CCeEEEEe
Confidence 6899999 899999999999886 47877764
No 451
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=39.52 E-value=1.1e+02 Score=26.16 Aligned_cols=88 Identities=11% Similarity=0.183 Sum_probs=47.0
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 5 kvgInG~-GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
+|.|+|. |.+|...++.+... +.+++.... +.+...++.++ |. + ..++.+... ...
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~-g~~v~~~~~---~~~~~~~~~~~----g~----------~--~~~~~~~~~-~~~-- 205 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKL-GYTVVALTG---KEEQADYLKSL----GA----------S--EVLDREDLL-DES-- 205 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHc-CCEEEEEeC---CHHHHHHHHhc----CC----------c--EEEcchhHH-HHH--
Confidence 6899995 99999988866655 466655543 22333333221 10 0 112211100 000
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCC
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~Ga 118 (218)
.+. +...++|+|++|+|. ...+.+..++..+.
T Consensus 206 -~~~-~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g 237 (325)
T cd05280 206 -KKP-LLKARWAGAIDTVGG-DVLANLLKQTKYGG 237 (325)
T ss_pred -HHH-hcCCCccEEEECCch-HHHHHHHHhhcCCC
Confidence 000 122368999999997 35566667776554
No 452
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=39.30 E-value=87 Score=29.00 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=20.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcC
Q 027805 3 KVKIGINGFGRIGRLVARVILQR 25 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~ 25 (218)
++||+|+|.|.-|-.++..+.+.
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhc
Confidence 47999999999999999988765
No 453
>PRK04148 hypothetical protein; Provisional
Probab=39.29 E-value=42 Score=26.77 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=23.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.|+.++|+| -|..+++.+.+. +.+|++|-
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~-G~~ViaID 46 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES-GFDVIVID 46 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC-CCEEEEEE
Confidence 579999999 787788877765 68999884
No 454
>PRK12827 short chain dehydrogenase; Provisional
Probab=39.26 E-value=57 Score=26.75 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=25.3
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEe
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+++-|.| .|.||+.+++.+.+. +.+++.+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~-g~~v~~~~ 37 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAAD-GADVIVLD 37 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCeEEEEc
Confidence 36899999 899999999999876 46776654
No 455
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.25 E-value=47 Score=31.49 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=24.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.||.|+|+|..|+.+++.+.... .++.+ .|.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G-~~v~~-~D~ 38 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHG-ARLRV-ADT 38 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCC-CEEEE-EcC
Confidence 48999999999999888888764 66654 564
No 456
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=39.16 E-value=54 Score=26.16 Aligned_cols=31 Identities=35% Similarity=0.424 Sum_probs=26.1
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
++-|+|.|..|+.+++.+.+. ++++++.-|.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~-g~~vvgfid~ 31 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS-GWEIVGFLDD 31 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCEEEEEEcC
Confidence 467999999999999987654 6899998875
No 457
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=38.91 E-value=54 Score=29.17 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=26.4
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
+||-|.| .|.||+.+++.+.+. +.+|+++..
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~-G~~V~~~~r 42 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQR-GYTVHATLR 42 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeC
Confidence 6899999 899999999999887 478887654
No 458
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=38.91 E-value=1.9e+02 Score=26.09 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=43.2
Q ss_pred CCccEEEeeCCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEEcCChhhhhHHHHHHHHHhhcC
Q 027805 92 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFG 171 (218)
Q Consensus 92 ~gvDiVve~tg~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~~~~~~~~IIs~aSCtT~~Lap~lk~L~~~fg 171 (218)
.+|+.||-+.....+..-.+..-+++. ++|+..+....+.-.+- ...++...-.......++++.|.+++|
T Consensus 77 ~~V~~vvG~~~S~~~~a~~~v~~~~~i--~~i~p~st~~~~~~~~~-------~~~vfr~~~~~~~q~~~~~~~l~~~~~ 147 (366)
T COG0683 77 DGVDAVVGPTTSGVALAASPVAEEAGV--PLISPSATAPQLTGRGL-------KPNVFRTGPTDNQQAAAAADYLVKKGG 147 (366)
T ss_pred cCceEEEEeccCcccccchhhHhhcCc--eEEeecCCCCccccccc-------ccceEEecCChHHHHHHHHHHHHHhcC
Confidence 467777777666555555554444444 45543322111111111 112677777777788899999999988
Q ss_pred eeEE
Q 027805 172 IVEG 175 (218)
Q Consensus 172 I~~~ 175 (218)
.+++
T Consensus 148 ~k~v 151 (366)
T COG0683 148 KKRV 151 (366)
T ss_pred CcEE
Confidence 8444
No 459
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=38.85 E-value=2.2e+02 Score=24.62 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=24.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
.+|-|+|-|.++..=++.+++.+ .+|+.|+.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap 56 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKG-CYVYILSK 56 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEcC
Confidence 57999999999988888888763 66666653
No 460
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=38.71 E-value=1.4e+02 Score=29.01 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=25.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~ 37 (218)
.|+.|-|||-+|....+-+.+ ++-.+++|.|..
T Consensus 252 kr~~i~G~Gnv~~~aa~~l~~-~G~kvvavsD~~ 284 (514)
T KOG2250|consen 252 KRVVIQGFGNVGGHAAKKLSE-KGAKVVAVSDSK 284 (514)
T ss_pred eEEEEeCCCchHHHHHHHHHh-cCCEEEEEEcCc
Confidence 689999999999877665554 467888888763
No 461
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=38.59 E-value=44 Score=29.20 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=22.7
Q ss_pred EEEEEc-cChhHHHHHHHHHcCCCceEEEEe
Q 027805 5 KIGING-FGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 5 kvgInG-~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
||-|-| .|.||+.+.+.+.+.. +++++.
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~ 30 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALD 30 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEec
Confidence 899999 7999999999888765 455553
No 462
>PRK06180 short chain dehydrogenase; Provisional
Probab=38.54 E-value=62 Score=27.61 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=25.6
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
..++-|.| .|-||+.+++.+.+. +.+|+++.-
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r 36 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA-GHRVVGTVR 36 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC-cCEEEEEeC
Confidence 35789999 899999999998876 577776653
No 463
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=38.54 E-value=46 Score=29.93 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=24.3
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
+|||+|-|..|+.+++++.+. +++++++.
T Consensus 1 ~igiiG~gql~~~l~~aa~~l-G~~v~~~d 29 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPL-GIKVHVLD 29 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCEEEEEC
Confidence 589999999999999988876 57777764
No 464
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=38.49 E-value=96 Score=26.58 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=25.0
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
-+|-|+| .|.+|...++.+... +.+++.+.+.
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~-G~~v~~~~~~ 173 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAAR-GINVINLVRR 173 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHC-CCeEEEEecC
Confidence 3688888 699999988877665 5788888765
No 465
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.43 E-value=61 Score=26.54 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=24.9
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEE
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
+.++-|.| .|.||+.+++.+.+. +.+++.+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~-g~~v~~~ 35 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKE-GAKVVIA 35 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEE
Confidence 45899999 899999999998766 5777766
No 466
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=38.40 E-value=2e+02 Score=26.01 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=22.5
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG~-GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
-+|.|+|. |.+|...++.+... +.+++.+.
T Consensus 191 ~~vlV~Ga~g~vG~~ai~~ak~~-G~~vi~~~ 221 (398)
T TIGR01751 191 DNVLIWGAAGGLGSYATQLARAG-GGNPVAVV 221 (398)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHc-CCeEEEEc
Confidence 37889995 99999988777654 57766654
No 467
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=38.23 E-value=1e+02 Score=26.72 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
-+|.|+|.|.+|...++.+....+..++++..
T Consensus 164 ~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~ 195 (338)
T PRK09422 164 QWIAIYGAGGLGNLALQYAKNVFNAKVIAVDI 195 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Confidence 37889999999999888776543577887754
No 468
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=38.15 E-value=56 Score=28.95 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=25.2
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCC-CceEEEEe
Q 027805 3 KVKIGING-FGRIGRLVARVILQRD-DVELVAVN 34 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~-~~~vvaIn 34 (218)
..+|-|.| .|.||+.+++.++... ..+|+.+.
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~ 37 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYS 37 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 46899999 8999999999998763 35666553
No 469
>PRK08017 oxidoreductase; Provisional
Probab=38.04 E-value=65 Score=26.71 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=25.0
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
.++-|.| .|.||+.+++.+.+. +.+++++..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~-g~~v~~~~r 34 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR-GYRVLAACR 34 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC-CCEEEEEeC
Confidence 4799999 599999999999876 467776643
No 470
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=37.79 E-value=69 Score=27.63 Aligned_cols=31 Identities=13% Similarity=0.308 Sum_probs=23.7
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
-+|.|+| .|.+|...++.+... +.+++++..
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~-G~~vi~~~~ 178 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLL-GARVVGIAG 178 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHc-CCEEEEEeC
Confidence 3688999 799999888877665 577777754
No 471
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=37.77 E-value=57 Score=28.22 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=23.7
Q ss_pred EEEEc-cChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 6 IGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 6 vgInG-~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
|-|.| .|.||+.+++.+.+.+ .+++++.|.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEecC
Confidence 45788 8999999999998874 666776664
No 472
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=37.73 E-value=59 Score=29.90 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=23.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCC-CceEEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRD-DVELVAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~-~~~vvaI 33 (218)
+||+|+|.|--|-.++..+.+.. .+.+-+.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r 32 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGR 32 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEec
Confidence 59999999999999999888763 4554443
No 473
>PRK06182 short chain dehydrogenase; Validated
Probab=37.73 E-value=65 Score=27.28 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=26.4
Q ss_pred CCccEEEEEc-cChhHHHHHHHHHcCCCceEEEEe
Q 027805 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 1 m~~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
|...++-|.| .|.||+.+++.+.+. +.+|+++.
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~-G~~V~~~~ 34 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQ-GYTVYGAA 34 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEe
Confidence 5456889999 899999999998876 46777664
No 474
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=37.69 E-value=2.5e+02 Score=23.70 Aligned_cols=87 Identities=21% Similarity=0.297 Sum_probs=50.3
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEeecC
Q 027805 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (218)
Q Consensus 5 kvgInG~-GrIGr~~~r~~~~~~~~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (218)
.|.|.|. |.+|+..++.+... +.+++++... .+....+.+ +| .+ ......+
T Consensus 135 ~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~---~~~~~~~~~----~g----~~-------~~~~~~~--------- 186 (305)
T cd08270 135 RVLVTGASGGVGRFAVQLAALA-GAHVVAVVGS---PARAEGLRE----LG----AA-------EVVVGGS--------- 186 (305)
T ss_pred EEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCC---HHHHHHHHH----cC----Cc-------EEEeccc---------
Confidence 6788995 99999888877665 4677776542 233322211 12 00 0111111
Q ss_pred CCCCCccCCCccEEEeeCCcccCHHhHHHHHhCCCCEEEEe
Q 027805 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (218)
Q Consensus 84 p~~i~W~~~gvDiVve~tg~f~~~~~a~~h~~~GakkViis 124 (218)
+ +...++|+++||+|.- ..+.+..++..+.+-|.+.
T Consensus 187 --~--~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 187 --E--LSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSVG 222 (305)
T ss_pred --c--ccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEEe
Confidence 0 1113789999999964 5566777887776444444
No 475
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=37.48 E-value=72 Score=27.60 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=23.5
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
-+|.|.| .|.+|+..++.+... +.+++++..
T Consensus 142 ~~vlI~g~~g~ig~~~~~lak~~-G~~v~~~~~ 173 (327)
T PRK10754 142 EQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVG 173 (327)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHc-CCEEEEEeC
Confidence 3788886 899999887766655 578877754
No 476
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=37.33 E-value=2.4e+02 Score=24.42 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=21.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCc-eEEEEe
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~-~vvaIn 34 (218)
-+|-|.|.|-+|+..++.+... ++ .++++.
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~ 197 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRA-GAAEIVATD 197 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEEC
Confidence 3688899999999888777655 45 555553
No 477
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=37.15 E-value=48 Score=29.75 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=23.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~~ 37 (218)
.+++|+|.|..++.+++++.....++-|-|.+..
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~ 162 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRS 162 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SS
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccC
Confidence 4899999999999999988753338888888873
No 478
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=37.15 E-value=49 Score=29.84 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=25.2
Q ss_pred EEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 5 kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
||+|+|-|..|+.+++++.+. +++++++..
T Consensus 1 kililG~g~~~~~l~~aa~~~-G~~v~~~d~ 30 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL-GVEVIAVDR 30 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCEEEEEeC
Confidence 799999999999999988776 678777743
No 479
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=37.04 E-value=48 Score=29.50 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=23.8
Q ss_pred EEEEccChhHHHHHHHHHcCCCceEEEEeCCC
Q 027805 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (218)
Q Consensus 6 vgInG~GrIGr~~~r~~~~~~~~~vvaInd~~ 37 (218)
|+|+|.|.+|..++..+...+-..-+.+.|..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~ 32 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 58999999999999888776544444555653
No 480
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=37.02 E-value=49 Score=32.14 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=21.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
.||+|+|.|.-|-..++.+++. +++++..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-g~~~~~f 30 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-GLEVTCF 30 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-T-EEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCCCeEE
Confidence 5999999999999999999876 5887755
No 481
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=36.62 E-value=79 Score=27.69 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=22.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
-+|.|+|.|.+|+..++.+...+...++++
T Consensus 168 ~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~ 197 (345)
T cd08286 168 DTVAIVGAGPVGLAALLTAQLYSPSKIIMV 197 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 378889999999988877765543666664
No 482
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=36.41 E-value=57 Score=28.99 Aligned_cols=33 Identities=12% Similarity=0.360 Sum_probs=26.7
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEEe
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
|++..|.|+|-|-+|...+..+.+. +.+|+.|.
T Consensus 1 ~~~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie 33 (376)
T PRK11259 1 TMRYDVIVIGLGSMGSAAGYYLARR-GLRVLGLD 33 (376)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHC-CCeEEEEe
Confidence 5567899999999999999888876 46766554
No 483
>PRK06823 ornithine cyclodeaminase; Validated
Probab=36.35 E-value=73 Score=28.76 Aligned_cols=33 Identities=24% Similarity=0.207 Sum_probs=28.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.+++|+|.|..++.+++++.....++-|-|.+.
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r 161 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR 161 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC
Confidence 589999999999999999886666788888776
No 484
>PLN02214 cinnamoyl-CoA reductase
Probab=36.23 E-value=64 Score=28.81 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=25.7
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
.+|-|-| .|.||+.+++.+.+. +.+|+++.-
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r 42 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLER-GYTVKGTVR 42 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeC
Confidence 5899999 799999999999877 467777653
No 485
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=36.22 E-value=66 Score=26.14 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=24.0
Q ss_pred EEEEc-cChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 6 IGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 6 vgInG-~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
|-|.| .|.||+.+++.++++. .+++++...
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Ccccccccc
Confidence 56889 9999999999999875 556666654
No 486
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=35.93 E-value=1.5e+02 Score=25.44 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=24.1
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
-++.|.| .|.+|+.+++.+... +..++++..
T Consensus 164 ~~vlI~ga~g~vG~~~~~~a~~~-g~~v~~~~~ 195 (332)
T cd08259 164 DTVLVTGAGGGVGIHAIQLAKAL-GARVIAVTR 195 (332)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-CCeEEEEeC
Confidence 3788999 699999998888765 477776653
No 487
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=35.88 E-value=55 Score=27.34 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=26.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
.||.|+|.|-+|..+++++... ++.-+.+.|+
T Consensus 22 s~VlIiG~gglG~evak~La~~-GVg~i~lvD~ 53 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLS-GIGSLTILDD 53 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHc-CCCEEEEEEC
Confidence 6899999999999999999876 4666666665
No 488
>PRK06914 short chain dehydrogenase; Provisional
Probab=35.80 E-value=74 Score=26.94 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=26.7
Q ss_pred CCccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeC
Q 027805 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 1 m~~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
|+...+-|.| .|.||+.+++.+.+. +.+|+++..
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~-G~~V~~~~r 35 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKK-GYLVIATMR 35 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhC-CCEEEEEeC
Confidence 5545678888 899999999999876 577777753
No 489
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=35.77 E-value=58 Score=30.31 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=26.9
Q ss_pred cEEEEEccChhHHHHHHHHHcC-CCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~-~~~~vvaInd~ 36 (218)
+||.|+|-|.-|-..++.+.+. ++.+|+-|..-
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~ 35 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKD 35 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECC
Confidence 4999999999999988888643 57888888653
No 490
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=35.73 E-value=55 Score=29.57 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=27.3
Q ss_pred CCccEEEEEccChhHHHHHHHHHc-CCCceEEEEeC
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQ-RDDVELVAVND 35 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~-~~~~~vvaInd 35 (218)
|| .+|.|+|-|.-|-..++.+.+ .++.+|+.|..
T Consensus 1 m~-~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~ 35 (377)
T PRK04965 1 MS-NGIVIIGSGFAARQLVKNIRKQDAHIPITLITA 35 (377)
T ss_pred CC-CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeC
Confidence 54 599999999999999988865 35688887764
No 491
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=35.53 E-value=56 Score=28.27 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.1
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
.+|-|-| .|.||+.+++.+++.+ .+|+++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-YTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-CEEEEEE
Confidence 5799999 8999999999998874 6777664
No 492
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=35.38 E-value=60 Score=29.74 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=26.6
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 1 m~~~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
||+.-|.|+|.|+-|...++.+.+.. ++++.+
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G-~~Vlvl 32 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAG-LDVLVL 32 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcC-CeEEEE
Confidence 55689999999999999999888765 776665
No 493
>PRK06199 ornithine cyclodeaminase; Validated
Probab=35.37 E-value=65 Score=29.93 Aligned_cols=33 Identities=12% Similarity=0.370 Sum_probs=28.3
Q ss_pred cEEEEEccChhHHHHHHHHHc-CCCceEEEEeCC
Q 027805 4 VKIGINGFGRIGRLVARVILQ-RDDVELVAVNDP 36 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~-~~~~~vvaInd~ 36 (218)
.+++|+|.|..++.+++++.. +|.++-|-|-+.
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r 189 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGR 189 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECC
Confidence 589999999999999999876 556888888876
No 494
>PRK12829 short chain dehydrogenase; Provisional
Probab=35.27 E-value=71 Score=26.56 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=25.3
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCCCceEEEEe
Q 027805 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 3 ~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
..++-|.| .|.||+.+++.+.+.+ .+|+.+.
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~~ 42 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAG-ARVHVCD 42 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 46899999 8999999999998764 6666664
No 495
>PRK06847 hypothetical protein; Provisional
Probab=35.21 E-value=61 Score=28.85 Aligned_cols=30 Identities=23% Similarity=0.110 Sum_probs=22.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCceEEEE
Q 027805 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (218)
Q Consensus 3 ~~kvgInG~GrIGr~~~r~~~~~~~~~vvaI 33 (218)
+.+|.|+|.|..|-..+..+.+. +++++.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~ 33 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA-GIAVDLV 33 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC-CCCEEEE
Confidence 57899999999998887777654 4555444
No 496
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=35.19 E-value=2.3e+02 Score=22.62 Aligned_cols=104 Identities=23% Similarity=0.355 Sum_probs=59.5
Q ss_pred EEEE-c-cChhHHHHHHHHHc-CCC-ceEEEEeCCCcChhhhhhheeeccccccccCccEEEeCCceEEECCEEEEEEee
Q 027805 6 IGIN-G-FGRIGRLVARVILQ-RDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (218)
Q Consensus 6 vgIn-G-~GrIGr~~~r~~~~-~~~-~~vvaInd~~~~~~~~ayl~kydS~~G~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (218)
|+|+ | =|.||+.+...+.+ .|+ ++++|+-.- ... ...|+|---..|.- .++ .+++|=
T Consensus 2 I~VIDGQGGGiG~~iv~~lr~~~~~~~eI~AlGTN--a~A-T~~MlKaGA~~gAT-------GEN-aIv~n~-------- 62 (131)
T PF12953_consen 2 IAVIDGQGGGIGKQIVEKLRKELPEEVEIIALGTN--AIA-TSAMLKAGANEGAT-------GEN-AIVVNA-------- 62 (131)
T ss_pred EEEEeCCCChhHHHHHHHHHHhCCCCcEEEEEehh--HHH-HHHHHHcCCCCccc-------ccc-hheecc--------
Confidence 4444 5 68999999998864 465 999999653 122 23455532222210 112 243331
Q ss_pred cCCCCCCccCCCccEEEeeCC--------cccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeecCcc
Q 027805 82 RNPEEIPWAETGAEYVVESTG--------VFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN 140 (218)
Q Consensus 82 ~~p~~i~W~~~gvDiVve~tg--------~f~~~~~a~~h~~~GakkViis~ps~d~p~~V~gvN~~ 140 (218)
..+|+++-..| ...|...|..-.+.-|+|+++ |-...-.++.|+..+
T Consensus 63 ----------~~aDiIvGpigIv~a~smlGEiTp~mA~AI~~S~A~KiLi--Pl~~~~~~ivG~~~~ 117 (131)
T PF12953_consen 63 ----------RKADIIVGPIGIVIANSMLGEITPAMAEAIAQSPAKKILI--PLNRCNIEIVGVENE 117 (131)
T ss_pred ----------CCCCEEECcHHHhccCcccccccHHHHHHHhcCCCCEEEE--eecCCCCEEECCCCC
Confidence 14566664444 455667777777788999887 432344566666543
No 497
>PRK07023 short chain dehydrogenase; Provisional
Probab=35.08 E-value=67 Score=26.58 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=24.5
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCceEEEEe
Q 027805 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (218)
Q Consensus 4 ~kvgInG-~GrIGr~~~r~~~~~~~~~vvaIn 34 (218)
+++-|.| .|.||+.+++.+.+. +.+++.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~-G~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQP-GIAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhC-CCEEEEEe
Confidence 3889999 899999999998876 46766654
No 498
>PLN02686 cinnamoyl-CoA reductase
Probab=35.05 E-value=68 Score=29.07 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=27.3
Q ss_pred CccEEEEEc-cChhHHHHHHHHHcCCCceEEEEeCC
Q 027805 2 GKVKIGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (218)
Q Consensus 2 ~~~kvgInG-~GrIGr~~~r~~~~~~~~~vvaInd~ 36 (218)
+..+|-|-| .|.||+.+++.+++. +.+|+++.+.
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~-G~~V~~~~r~ 86 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRH-GYSVRIAVDT 86 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 346899999 899999999999876 4788776553
No 499
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.85 E-value=55 Score=30.95 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=24.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCceEEEEeC
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~vvaInd 35 (218)
.||.|.|+|+-|+..+|.+. . +.+++ +.|
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~-~-g~~v~-v~D 35 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQ-N-KYDVI-VYD 35 (454)
T ss_pred CEEEEEeecHHHHHHHHHHh-C-CCEEE-EEC
Confidence 58999999999999999887 4 67765 455
No 500
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=34.84 E-value=40 Score=30.99 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCce
Q 027805 4 VKIGINGFGRIGRLVARVILQRDDVE 29 (218)
Q Consensus 4 ~kvgInG~GrIGr~~~r~~~~~~~~~ 29 (218)
.+|+|+|+|-=|+.++.++.++. ++
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSG-ln 43 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSG-LN 43 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcC-Cc
Confidence 59999999999999888887774 54
Done!