RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027805
(218 letters)
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 417 bits (1075), Expect = e-149
Identities = 173/200 (86%), Positives = 190/200 (95%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHGQWKH +
Sbjct: 1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSD 60
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
+K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFTDK+KAAAHLKGGAKK
Sbjct: 61 IKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKK 120
Query: 121 VIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
V+ISAPSKDAPMFV GVNE++Y +++IVSNASCTTNCLAPLAKVIHD FGI+EGLMTTV
Sbjct: 121 VVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTV 180
Query: 181 HSITATQKTVDGPSSKDWRG 200
H+ITATQKTVDGPSSKDWRG
Sbjct: 181 HAITATQKTVDGPSSKDWRG 200
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding
rossmann-fold domain, alpha and beta protein,
oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 401 bits (1032), Expect = e-143
Identities = 119/197 (60%), Positives = 147/197 (74%), Gaps = 2/197 (1%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
V++ INGFGRIGRLV R+ L R +VE+VA+NDPFIT DY YMFKYDS HG++ E+
Sbjct: 2 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAG-EVSH 60
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
D ++ K + + R+P +PW + + ++STGVF + D A H+ GAKKV+I
Sbjct: 61 DDKH-IIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119
Query: 124 SAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
+APS APMFV+GVNE +Y +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 120 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 179
Query: 184 TATQKTVDGPSSKDWRG 200
TATQKTVDGPS KDWRG
Sbjct: 180 TATQKTVDGPSHKDWRG 196
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 398 bits (1025), Expect = e-142
Identities = 132/200 (66%), Positives = 157/200 (78%), Gaps = 2/200 (1%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
MGKVK+G+NGFGRIGRLV R V++VA+NDPFI +YM YMF+YDS HG++
Sbjct: 1 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHG-T 59
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
+K ++ K L+ P+T+F R+P +I W + GAEYVVESTGVFT +KA AHL+GGAK+
Sbjct: 60 VKAENGK-LVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKR 118
Query: 121 VIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
VIISAPS DAPMFV+GVN +Y L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTV
Sbjct: 119 VIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTV 178
Query: 181 HSITATQKTVDGPSSKDWRG 200
H+ITATQKTVDGPS K WR
Sbjct: 179 HAITATQKTVDGPSGKLWRD 198
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, structural genomi pathogenic protozoa
consortium; HET: NAD AES; 2.25A {Plasmodium falciparum}
SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 396 bits (1020), Expect = e-141
Identities = 120/203 (59%), Positives = 151/203 (74%), Gaps = 5/203 (2%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
M K+GINGFGRIGRLV R R D+E+VA+NDPF+ +++ Y+ KYDSVHGQ+ E
Sbjct: 9 MAATKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPC-E 67
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
+ D LL GEK V+VF ++P +IPW + + V ESTGVF K+ A++HLKGGAKK
Sbjct: 68 VTHADGF-LLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKK 126
Query: 121 VIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
VI+SAP KD P++V+G+N ++Y + IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTT
Sbjct: 127 VIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTT 186
Query: 180 VHSITATQKTVDGPSS--KDWRG 200
VH+ TA Q VDGPS KDWR
Sbjct: 187 VHASTANQLVVDGPSKGGKDWRA 209
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase,
structural genomics, structural genomics CON SGC,
glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB:
3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 396 bits (1019), Expect = e-141
Identities = 120/201 (59%), Positives = 155/201 (77%), Gaps = 4/201 (1%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
++ +GINGFGRIGRLV R +++ V++VAVNDPFI +YM YMFKYDS HG++K
Sbjct: 5 ARELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKG-S 62
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
++ ++ + L+ ++V+ + P++IPW G+ YVVESTGV+ A+ H+ GA++
Sbjct: 63 VEFRNGQ-LVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQR 121
Query: 121 VIISAPSKDAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
V+ISAPS DAPMFV+GVNEN+Y P +NIVSNASCTTNCLAPLAKVIH++FGIVEGLMTT
Sbjct: 122 VVISAPSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTT 181
Query: 180 VHSITATQKTVDGPSSKDWRG 200
VHS TATQKTVDGPS K WR
Sbjct: 182 VHSYTATQKTVDGPSRKAWRD 202
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics; HET: NAD; 1.90A
{Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A*
3chz_A 3cie_A* 3cif_A* 3sth_A*
Length = 354
Score = 391 bits (1007), Expect = e-139
Identities = 124/204 (60%), Positives = 153/204 (75%), Gaps = 6/204 (2%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
+ +GINGFGRIGRLV R ++R+D+ +VA+NDPF+ +YM Y+ KYDSVHG +
Sbjct: 15 YFQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNG-T 73
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
++V L K V VF ++P EIPW +GA+ V ESTGVFT ++KA+ HLKGGAKK
Sbjct: 74 VEVSGKD-LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKK 132
Query: 121 VIISAPSKD-APMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 178
VIISAP KD PM+V+GVN EY P + N++SNASCTTNCLAPLAK+I+DKFGIVEGLMT
Sbjct: 133 VIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMT 192
Query: 179 TVHSITATQKTVDGPSS--KDWRG 200
TVHS+TA Q TVDGPS KDWR
Sbjct: 193 TVHSLTANQLTVDGPSKGGKDWRA 216
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A*
1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 386 bits (995), Expect = e-137
Identities = 112/198 (56%), Positives = 144/198 (72%), Gaps = 5/198 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
+K+GINGFGRIGR+V R +R D+E+VA+ND + DYM YM KYDS HG++ ++V
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDG-TVEV 59
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
KD ++ G K + V R+P + W E G + V E+TG+F + A H+ GAKKV++
Sbjct: 60 KDGHLIVNG-KKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 124 SAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
+ PSKD PMFV G N ++Y + +IVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177
Query: 183 ITATQKTVDGPSSKDWRG 200
TATQKTVDGPS KDWRG
Sbjct: 178 TTATQKTVDGPSHKDWRG 195
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma
cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A*
1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 376 bits (967), Expect = e-132
Identities = 104/211 (49%), Positives = 142/211 (67%), Gaps = 14/211 (6%)
Query: 4 VKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
+K+GINGFGRIGR+V + + + ++++VAV D +Y Y +YD+VHG++K+
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 60 -------ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAA 112
KDD ++ G + + V RNP ++PW + G EYV+ESTG+FT K A
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 113 HLKGGAKKVIISAPSK-DAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKV-IHDK 169
HL+GGA+KV+ISAP+ A V+GVN +EY P E ++VSNASCTTNCLAP+ V + +
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKEG 182
Query: 170 FGIVEGLMTTVHSITATQKTVDGPSSKDWRG 200
FG+ GLMTT+HS TATQKTVDG S KDWRG
Sbjct: 183 FGVQTGLMTTIHSYTATQKTVDGVSVKDWRG 213
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 340 bits (874), Expect = e-119
Identities = 103/199 (51%), Positives = 138/199 (69%), Gaps = 6/199 (3%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+GINGFGRIGR V R L+ D+E+VAVND + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
+ L+ K + V R+PE + W E G + VVESTG FT ++ AA HL+ GAKKVII
Sbjct: 60 NGN-NLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 124 SAPSKDA-PMFVVGVNENEYKPEL-NIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
SAP+K+ V+GVN+++Y P+ +++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 182 SITATQKTVDGPSSKDWRG 200
S T Q+ +D P KD R
Sbjct: 179 SYTNDQRILDLP-HKDLRR 196
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
3ksz_O*
Length = 338
Score = 339 bits (872), Expect = e-118
Identities = 91/199 (45%), Positives = 123/199 (61%), Gaps = 5/199 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+ INGFGRIGRL R I + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 5 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 62
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
D K V F + ++PW + + V+E TG +TDKDKA AH++ GAKKV+I
Sbjct: 63 VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121
Query: 124 SAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
SAP+ D V N E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 122 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 181
Query: 183 ITATQKTVDGPSSK-DWRG 200
T Q T D P K D R
Sbjct: 182 YTGDQNTQDAPHRKGDKRR 200
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 331 bits (852), Expect = e-115
Identities = 96/200 (48%), Positives = 140/200 (70%), Gaps = 6/200 (3%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
+K+GINGFGRIGR R R+++E+VA+ND ++ ++ KYDSVHG +K ++
Sbjct: 2 AIKVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFKG-SVE 59
Query: 63 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
KDD +++ K + VF ++P +IPW + G + V+E+TGVF D++ A+ HL+GGAKKVI
Sbjct: 60 AKDD-SIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVI 118
Query: 123 ISAPSKDA-PMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
I+AP+K+ V+GVNE +Y P E NI+SNASCTTNCLAP KV+++ FG+ +G M TV
Sbjct: 119 ITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTV 178
Query: 181 HSITATQKTVDGPSSKDWRG 200
H+ T Q+ +D P KD+R
Sbjct: 179 HAYTNDQRLLDLP-HKDFRR 197
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 328 bits (843), Expect = e-114
Identities = 89/201 (44%), Positives = 120/201 (59%), Gaps = 6/201 (2%)
Query: 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
K+K+ INGFGRIGR R R +++V +ND +++ KYDS+ G + +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
+K D + K + V RNP +PW + G + V+E TGVF D+D A HL+ GAKK
Sbjct: 59 VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 121 VIISAPSKDA-PMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
V+I+AP K P +VVGVNE Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 180 VHSITATQKTVDGPSSKDWRG 200
HS T Q+ +D +D R
Sbjct: 179 THSYTGDQRLLDAS-HRDLRR 198
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural
genomics, national institute of allergy AN infectious
diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 325 bits (836), Expect = e-113
Identities = 88/200 (44%), Positives = 132/200 (66%), Gaps = 6/200 (3%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
++ INGFGRIGR+V R ++ E+VA+N + ++ + ++ KYD+VHG++ ++
Sbjct: 4 MTRVAINGFGRIGRMVFRQAIKESAFEIVAINASY-PSETLAHLIKYDTVHGKFDG-TVE 61
Query: 63 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
+D LL K + + R+P+E+PW + G E V+E+TG F K+KA H++ GAKKVI
Sbjct: 62 AFED-HLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVI 120
Query: 123 ISAPSKDA-PMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
++AP K+ VVGVNE++ + ++SNASCTTNCLAP+ KV+ ++FGI GLMTTV
Sbjct: 121 LTAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTV 180
Query: 181 HSITATQKTVDGPSSKDWRG 200
H+ T QK +D P KD R
Sbjct: 181 HAYTNDQKNIDNP-HKDLRR 199
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis,
oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A
{Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O*
1vc2_A*
Length = 331
Score = 320 bits (823), Expect = e-111
Identities = 97/199 (48%), Positives = 129/199 (64%), Gaps = 7/199 (3%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
+K+GINGFGRIGR V R++ R VE+ +ND + ++ KYDS++ ++ E+
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG-VEVALIND-LTDNKTLAHLLKYDSIYHRFPG-EVAY 57
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
D L K + V++P+EIPWAE G V+ESTGVFTD DKA AHL+GGAKKVII
Sbjct: 58 DDQ-YLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 124 SAPSKDA-PMFVVGVNENEYKPEL-NIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
+AP+K V+GVN Y P +I+SNASCTTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVH 176
Query: 182 SITATQKTVDGPSSKDWRG 200
S T Q+ +D P KD R
Sbjct: 177 SYTNDQRLLDLP-HKDLRR 194
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 318 bits (818), Expect = e-110
Identities = 84/204 (41%), Positives = 128/204 (62%), Gaps = 11/204 (5%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
+K+ INGFGRIGR V ++ +R +++VA+ND + ++ KYDS G + +++
Sbjct: 21 SMKLAINGFGRIGRNVFKIAFERG-IDIVAIND-LTDPKTLAHLLKYDSTFGVYNK-KVE 77
Query: 63 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAA----HLK-GG 117
+D ++ + + + R+P+ +PWA+ G + V+ESTGVF+ H+ G
Sbjct: 78 SRDG-AIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAG 136
Query: 118 AKKVIISAPSKDA-PMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGL 176
AKKVI++ P+KD V+GVN+++ +L VSNASCTTNCLAPLAKV+H+ FGI +GL
Sbjct: 137 AKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGL 196
Query: 177 MTTVHSITATQKTVDGPSSKDWRG 200
MTTVH+ T Q+ +D P D R
Sbjct: 197 MTTVHAYTNDQRILDLP-HSDLRR 219
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 317 bits (816), Expect = e-109
Identities = 84/203 (41%), Positives = 127/203 (62%), Gaps = 9/203 (4%)
Query: 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
+++ INGFGRIGR R R D+E+VA+N+ ++ +YDSV G++ +
Sbjct: 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTS-DARTAAHLLEYDSVLGRFNA-D 59
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
+ ++ ++ K + + RNP +PW E + V+ESTGVF + A+ H++ GAKK
Sbjct: 60 ISYDEN-SITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKK 118
Query: 121 VIISAPSK--DAPMFVVGVNENEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
V+I+AP K +V+GVN++EY+ E ++SNASCTTNCLAP+AKV+HD FGI++G M
Sbjct: 119 VLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTM 178
Query: 178 TTVHSITATQKTVDGPSSKDWRG 200
TT HS T Q+ +D +D R
Sbjct: 179 TTTHSYTLDQRILDAS-HRDLRR 200
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold,
oxidoreductase-protein binding complex; HET: NAD; 2.20A
{Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 315 bits (809), Expect = e-109
Identities = 84/203 (41%), Positives = 127/203 (62%), Gaps = 9/203 (4%)
Query: 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
+++ INGFGRIGR R R D+E+VA+N+ ++ +YDSV G++ +
Sbjct: 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTS-DARTAAHLLEYDSVLGRFNA-D 59
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120
+ ++ ++ K + + RNP +PW E + V+ESTGVF + A+ H++ GAKK
Sbjct: 60 ISYDEN-SITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKK 118
Query: 121 VIISAPSK--DAPMFVVGVNENEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
V+I+AP K +V+GVN++EY+ E ++SNASCTTNCLAP+AKV+HD FGI++G M
Sbjct: 119 VLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTM 178
Query: 178 TTVHSITATQKTVDGPSSKDWRG 200
TT HS T Q+ +D +D R
Sbjct: 179 TTTHSYTLDQRILDAS-HRDLRR 200
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 312 bits (801), Expect = e-108
Identities = 94/199 (47%), Positives = 139/199 (69%), Gaps = 7/199 (3%)
Query: 5 KIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
++ INGFGRIGRLV R+I +R D+E+VA+ND T + ++ KYDSVH ++ +++
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPG-KVE 59
Query: 63 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
++ +L+ K + VF +P ++PW + G ++V+ESTGVF +++KA HL+ GAKKVI
Sbjct: 60 YTEN-SLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVI 118
Query: 123 ISAPSKDA-PMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
I+AP+K V+G NE++ KPE I+S ASCTTN +AP+ KV+H+KFGIV G++TTVH
Sbjct: 119 ITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVH 178
Query: 182 SITATQKTVDGPSSKDWRG 200
S T Q+ +D P KD R
Sbjct: 179 SYTNDQRVLDLP-HKDLRR 196
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308} PDB:
3l0d_A*
Length = 335
Score = 300 bits (770), Expect = e-103
Identities = 93/202 (46%), Positives = 132/202 (65%), Gaps = 11/202 (5%)
Query: 3 KVKIGINGFGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMT--YMFKYDSVHGQWKH 58
V++ INGFGRIGR + R I++ R D+++VA+ND T ++ +YDSVHG++
Sbjct: 2 AVRVAINGFGRIGRNILRAIVESGRTDIQVVAIND---LGPVETNAHLLRYDSVHGRFPK 58
Query: 59 HELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118
E++V D T+ G P+ V VRNP E+PW E + +E TG+FT +DKAA HL+ GA
Sbjct: 59 -EVEVAGD-TIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGA 116
Query: 119 KKVIISAPSKDA-PMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
K+VI+SAP+ A V GVN ++ + ++SNASCTTNCLAP+A+V++D GI +G M
Sbjct: 117 KRVIVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFM 176
Query: 178 TTVHSITATQKTVDGPSSKDWR 199
TT+HS T Q T+D KD
Sbjct: 177 TTIHSYTGDQPTLDTM-HKDLY 197
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 287 bits (737), Expect = 5e-98
Identities = 74/204 (36%), Positives = 118/204 (57%), Gaps = 13/204 (6%)
Query: 3 KVKIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMT--YMFKYDSVHGQWK 57
V++ INGFGRIGR V R + + ++ +VA+N+ D ++ KYD+ HG++
Sbjct: 2 TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINE---LADAAGMAHLLKYDTSHGRFA 58
Query: 58 HHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGG 117
E++ + D L G+ + V R+ + +PW E G + V++ TGV+ ++ AH+ G
Sbjct: 59 W-EVRQERD-QLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAG 116
Query: 118 AKKVIISAPSKDA--PMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEG 175
AKKV+ S P + V GVN+++ + E IVSNASCTTNC+ P+ K++ D +GI G
Sbjct: 117 AKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESG 176
Query: 176 LMTTVHSITATQKTVDGPSSKDWR 199
+TT+HS Q+ +D D R
Sbjct: 177 TVTTIHSAMHDQQVIDAY-HPDLR 199
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB:
3gnq_A*
Length = 335
Score = 285 bits (732), Expect = 3e-97
Identities = 85/203 (41%), Positives = 118/203 (58%), Gaps = 13/203 (6%)
Query: 4 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMT--YMFKYDSVHGQWKH 58
+++ ING+GRIGR + R + D+E+VA+ND D T ++ +YD+ HG++
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND---LGDPKTNAHLTRYDTAHGKFPG 58
Query: 59 HELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118
+ V ++ + V RNP ++PW + V+E TG FT K+KA AH+KGGA
Sbjct: 59 -TVSVNGS-YMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGA 116
Query: 119 KKVIISAPSKDA--PMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGL 176
KKVIISAP V GVN K ++SNASCTTNCLAPL K ++DK G+ +GL
Sbjct: 117 KKVIISAPGGADVDATVVYGVNHGTLKSTDTVISNASCTTNCLAPLVKPLNDKLGLQDGL 176
Query: 177 MTTVHSITATQKTVDGPSSKDWR 199
MTTVH+ T Q D +D R
Sbjct: 177 MTTVHAYTNNQVLTDVY-HEDLR 198
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 239 bits (612), Expect = 4e-79
Identities = 41/195 (21%), Positives = 68/195 (34%), Gaps = 15/195 (7%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
K+ ING+G IG+ VA + +DD+E++ V D+ + +V +K
Sbjct: 2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTK--TKPDFEARL----AVEKGYKLFVAI 55
Query: 63 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
+++ LF + + V G I A+ VV+ K K K I
Sbjct: 56 PDNERVKLFEDAGIPVEG-----TILDIIEDADIVVDGAPKKIGKQNLENIYKPHKVKAI 110
Query: 123 ISAPSKDA---PMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
+ K F + N + + V SC T L + I+ I + +
Sbjct: 111 LQGGEKAKDVEDNFNALWSYNRCYGK-DYVRVVSCNTTGLCRILYAINSIADIKKARIVL 169
Query: 180 VHSITATQKTVDGPS 194
V GP
Sbjct: 170 VRRAADPNDDKTGPV 184
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase,
oxidoreductase; HET: NAP; 2.10A {Methanothermus
fervidus} SCOP: c.2.1.3 d.81.1.1
Length = 337
Score = 237 bits (607), Expect = 2e-78
Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 16/194 (8%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
+ ING+G +G+ VA I Q+DD++++ V+ + + K ++
Sbjct: 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAI------- 54
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
++ LF + + V G + A+ V++ T + + G K +
Sbjct: 55 -PERVKLFEKAGIEVAGTVDD-----MLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108
Query: 124 SAPSKDAP--MFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
+ F N E + + SC T L K +HD FGI + V
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGK-DYTRVVSCNTTGLCRTLKPLHDSFGIKKVRAVIVR 167
Query: 182 SITATQKTVDGPSS 195
+ GP +
Sbjct: 168 RGADPAQVSKGPIN 181
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 236 bits (605), Expect = 4e-78
Identities = 42/195 (21%), Positives = 67/195 (34%), Gaps = 18/195 (9%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
KVK+G+NG+G IG+ VA + ++DD+EL+ + D+ Y K + E
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITK--TKPDFEAYRAKELGIPVYAASEEFI 59
Query: 63 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122
+ +K G + + +V++T + K G K +
Sbjct: 60 PRFEKE-----------GFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIF 108
Query: 123 ISAPSKDAP--MFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
D FV N + N V SC T L I + V +M
Sbjct: 109 QGGEKADVAEVSFVAQANYEAALGK-NYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRR 167
Query: 181 HSITATQKTVDGPSS 195
T GP +
Sbjct: 168 A--ADPNDTKRGPIN 180
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 171 bits (434), Expect = 2e-52
Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 15/194 (7%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
V + +NG+G IG+ VA I+++ D++LV V + +Y ++ + + V
Sbjct: 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAK--TSPNYEAFI-------AHRRGIRIYV 52
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123
F E + V G + ++ VV++T +L+ +
Sbjct: 53 PQQSIKKFEESGIPVAG-----TVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQ 107
Query: 124 SAPSKDAPMFVVGVNENEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
+ N + + SC T L ++ + + T V
Sbjct: 108 GGEKAEVADISFSALCNYNEALGKKYIRVVSCNTTALLRTICTVNKVSKVEKVRATIVRR 167
Query: 183 ITATQKTVDGPSSK 196
++ GP +
Sbjct: 168 AADQKEVKKGPINS 181
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor
ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A
{Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3
PDB: 1dap_A* 2dap_A* 3dap_A*
Length = 320
Score = 54.2 bits (130), Expect = 5e-09
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33
M +++ I G+G +GR V ++I ++ D++LV +
Sbjct: 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGI 33
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 52.6 bits (126), Expect = 2e-08
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35
K++ I G+G IGR + + + D E+ +
Sbjct: 7 DKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVR 41
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 45.4 bits (108), Expect = 5e-06
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 1 MGKVKIGINGFGRIGRLV-ARVILQRDDVELVAVNDP 36
M +K+G+ G G I + ++ + + E V P
Sbjct: 4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTP 40
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM
binding rossmann fold, structural genomics; HET: MSE
PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 45.4 bits (108), Expect = 5e-06
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37
V++ + G GR G+ R I LV +
Sbjct: 10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSN 44
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 44.6 bits (106), Expect = 8e-06
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37
++I + G GRIG + A I D+ELV + DPF
Sbjct: 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPF 38
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 44.2 bits (105), Expect = 1e-05
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 1 MGKVKIGINGFGRIGRLV-ARVILQRDDVELVAVNDP 36
+ K++IG+ G G I + V+ D L P
Sbjct: 3 LKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSP 39
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 43.0 bits (102), Expect = 3e-05
Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 30/150 (20%)
Query: 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAV----NDPFITTDYMTYMFKYDSVHGQ 55
G +++ + G GR+GR + I +R DVEL AV F+ D +
Sbjct: 19 PGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGS------- 71
Query: 56 WKHHELKVKDDKTLLFGEKPVTV-FGVRNPEEIPW-----AETGAEYVVESTGVFTDKDK 109
+++ DD F + F P+ A+ +++ +TG F+ ++
Sbjct: 72 -DFLGVRITDDPESAFSNTEGILDFSQ--PQASVLYANYAAQKSLIHIIGTTG-FSKTEE 127
Query: 110 AAAHLKGGAKKV-IISAPSKDAPMFVVGVN 138
A + AK I+ + + +GVN
Sbjct: 128 AQ--IADFAKYTTIVKSGN-----MSLGVN 150
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle
pigment, heme, bilirubin, NADH; 1.20A {Rattus
norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A
2h63_A*
Length = 294
Score = 42.5 bits (100), Expect = 4e-05
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
GK + + G GR G + R + + +
Sbjct: 5 SGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF 40
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 42.6 bits (101), Expect = 4e-05
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37
++IG+ G GRIG + A + DD L A++D
Sbjct: 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVR 36
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics;
1.70A {Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 42.4 bits (100), Expect = 5e-05
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
V + G GR ++A + + ++LV
Sbjct: 3 YNPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSR 38
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 41.9 bits (99), Expect = 6e-05
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 3 KVKIGINGFGRIGRLVARVILQR-DDVELVAVNDPF 37
+K GI G G IG R + VE+VAV D
Sbjct: 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIV 58
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 41.0 bits (97), Expect = 1e-04
Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 31/150 (20%)
Query: 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAV----NDPFITTDYMTYMFKYDSVHGQ 55
M +KI I G GR+GR++ +L D LV P + D ++ K V
Sbjct: 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGV--- 61
Query: 56 WKHHELKVKDDKTLLFGEKPVTV-FGVRNPEEIPW-----AETGAEYVVESTGVFTDKDK 109
+ DD + E + F PE + V+ +TG F++ K
Sbjct: 62 ------ALTDDIERVCAEADYLIDFT--LPEGTLVHLDAALRHDVKLVIGTTG-FSEPQK 112
Query: 110 AAAHLKGGAKKV-IISAPSKDAPMFVVGVN 138
A L+ +K+ ++ + + VGVN
Sbjct: 113 AQ--LRAAGEKIALVFSAN-----MSVGVN 135
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 41.2 bits (97), Expect = 1e-04
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 3 KVKIGINGFGRIGRLVARVILQR-DDVELVAVNDPF 37
++IG+ G G IG+ I + E+VAV D
Sbjct: 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVN 37
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 41.1 bits (97), Expect = 1e-04
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 3 KVKIGINGFGRIGRLVARVILQR-DDVELVAVNDPF 37
++ I G GR+G AR ++ + V+LVA
Sbjct: 8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALD 43
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom
protein structure initiative, PSI, NEW YORK structural
GENO research consortium; HET: NAD; 1.95A {Listeria
innocua}
Length = 359
Score = 41.2 bits (97), Expect = 1e-04
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
+ K ++ I G+G +G + D++E+ V D
Sbjct: 3 LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDI 38
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein
structure initiative; HET: NAD; 2.30A {Chromobacterium
violaceum}
Length = 359
Score = 40.8 bits (96), Expect = 1e-04
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 1 MGKVKIGINGFGRIGRLV-ARVILQRDDVELVAVNDP 36
+ +K+G+ G G + +LQ D+ +VA D
Sbjct: 3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDS 39
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD;
1.90A {Archaeoglobus fulgidus}
Length = 236
Score = 40.5 bits (94), Expect = 2e-04
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35
+G+ G+G IG+ +A L+R+ E+ A+ D
Sbjct: 2 LVGLIGYGAIGKFLAE-WLERNGFEIAAILD 31
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 40.4 bits (95), Expect = 2e-04
Identities = 7/36 (19%), Positives = 10/36 (27%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
M K++ G L EL V +
Sbjct: 2 MKKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFES 37
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 40.2 bits (94), Expect = 3e-04
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 3 KVKIGINGFGRIGRL-VARVILQRDDVELVAVNDP 36
K++ GI G G G + +A + D ++VA DP
Sbjct: 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDP 36
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 39.5 bits (93), Expect = 4e-04
Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 30/150 (20%)
Query: 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAV----NDPFITTDYMTYMFKYDSVHGQ 55
+++ I G GR+GR + + L + V+L A + +D
Sbjct: 3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGA------- 55
Query: 56 WKHHELKVKDDKTLLFGEKPVTV-FGVRNPEEIPW-----AETGAEYVVESTGVFTDKDK 109
+ V+ + + V + F PE + G V+ +TG F + K
Sbjct: 56 -GKTGVTVQSSLDAVKDDFDVFIDFTR--PEGTLNHLAFCRQHGKGMVIGTTG-FDEAGK 111
Query: 110 AAAHLKGGAKKV-IISAPSKDAPMFVVGVN 138
A ++ A + I+ A + F VGVN
Sbjct: 112 QA--IRDAAADIAIVFAAN-----FSVGVN 134
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion,
hydrolase; HET: NAD; 2.3A {Flavobacterium
meningosepticum} PDB: 2ixb_A*
Length = 444
Score = 39.7 bits (92), Expect = 4e-04
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
KV+I G G+ + +RDDVE+VA DP
Sbjct: 18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADP 53
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH,
oxidoreductase; 1.80A {Staphylococcus aureus}
Length = 243
Score = 38.8 bits (91), Expect = 5e-04
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
M +KI + G+G + + VAR+ + E+V V +
Sbjct: 1 MASMKILLIGYGAMNQRVARLA-EEKGHEIVGVIEN 35
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium, two domain; 2.30A {Rhizobium etli}
Length = 330
Score = 38.9 bits (91), Expect = 7e-04
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 1 MGKVKIGINGFGRIGRLV-ARVILQRDDVELVAVNDPF 37
M + + I G G+I R I + + +LVA
Sbjct: 23 MSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRH 60
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase,
rossmann-fold, sugar metabolism,
1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A
{Ensifer adhaerens}
Length = 332
Score = 38.4 bits (90), Expect = 0.001
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
+ G+ G I R ++ E+V++
Sbjct: 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMST 33
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structur genomics, protein structure initiative; 1.93A
{Bacteroides fragilis nctc 9343}
Length = 362
Score = 37.7 bits (88), Expect = 0.002
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 1 MGKVKIGINGFGRIGRL-VARVILQRDDVELVAV 33
+ +K G+ FG G++ A I EL +
Sbjct: 3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKI 36
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine
biosynthesis, NADH binding specificity, TB structural
genomics consortium; HET: NAD PDC PG4; 2.30A
{Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3
PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Length = 245
Score = 37.1 bits (87), Expect = 0.002
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36
+++G+ G G++G + R + DD+ L A D
Sbjct: 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDA 34
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 37.0 bits (86), Expect = 0.002
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 3 KVKIGINGFGRIGRLV-ARVILQRDDVELVAV 33
+KI + G G I + V+ Q D+ELV
Sbjct: 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLC 33
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics,
putative oxidoreductase YVAA, oxidoredu PSI-2, protein
structure initiative; 2.03A {Bacillus subtilis subsp}
PDB: 3gfg_A
Length = 358
Score = 36.9 bits (86), Expect = 0.003
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 1 MGKVKIGINGFGRIGRL-VARVILQRDDVELVAVND 35
+ +K+GI G+G G + ++ D+ ++ +
Sbjct: 3 LDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMT 38
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
genomics, center FO structural genomics of infectious
diseases; HET: MSE; 2.75A {Yersinia pestis}
Length = 352
Score = 36.9 bits (86), Expect = 0.003
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 1 MGKVKIGINGFGRIGR-LVARVILQRDDVELVAVNDP 36
K+K+G+ G+G + A +I+ +EL V+
Sbjct: 5 ADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSS 41
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.79A
{Sinorhizobium meliloti}
Length = 361
Score = 36.3 bits (84), Expect = 0.005
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
M +++ G L R L ++
Sbjct: 24 MDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEK 59
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 35.8 bits (83), Expect = 0.008
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 3 KVKIGINGFGRIGRLVARVILQR-DDVELVAVNDP 36
K++ + G GRI + + D EL+ V D
Sbjct: 13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDI 47
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 35.3 bits (82), Expect = 0.010
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTD 41
GK +GI G GRIGR VA +Q ++ + DP I+ +
Sbjct: 165 GKT-LGILGLGRIGREVAT-RMQSFGMKTIG-YDPIISPE 201
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 35.4 bits (82), Expect = 0.011
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTD 41
GK +G+ G GRIG+LVA+ + +VA DP+++
Sbjct: 142 GKT-VGVVGLGRIGQLVAQ-RIAAFGAYVVA-YDPYVSPA 178
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase;
oxidoreductase, structural genomics, NPPSFA; 2.40A
{Sulfolobus tokodaii}
Length = 350
Score = 34.9 bits (81), Expect = 0.013
Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 28/129 (21%)
Query: 79 FGVRNPEEIPWAETGAEYVVESTG---------VFT--DKDKAAAHLKGGAKK--VIISA 125
V+ E+ E + + ST V + + A + K +++S
Sbjct: 48 DAVKWIEQGDIPEEVQDLPIVSTNYEDHKDVDVVLSALPNELAESIELELVKNGKIVVSN 107
Query: 126 PS-----KDAPMFVVGVN----------ENEYKPELNIVSNASCTTNCLAPLAKVIHDKF 170
S D P+ +N + + +V N +CT ++ K + +
Sbjct: 108 ASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPIKPLIEIA 167
Query: 171 GIVEGLMTT 179
+ ++TT
Sbjct: 168 TKSKIIITT 176
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Enterococcus faecalis} PDB:
3fd8_A* 3hnp_A
Length = 349
Score = 35.0 bits (81), Expect = 0.014
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 4 VKIGINGFGRIGRL-VARVILQRDDVELVAVNDP 36
VK+G GFG+ ++ R+ +E+ + D
Sbjct: 3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDL 36
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II,
dimeric dihydodiol dehydrogenase, structural genomics;
2.70A {Enterococcus faecalis}
Length = 330
Score = 34.6 bits (80), Expect = 0.015
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33
+ K++ GI +I + + E+ +
Sbjct: 3 LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGI 35
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 34.4 bits (80), Expect = 0.017
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTD 41
GK IGI GFGRIG VA+ I + ++ DP+ +
Sbjct: 142 GKT-IGIIGFGRIGYQVAK-IANALGMNILL-YDPYPNEE 178
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 34.6 bits (80), Expect = 0.017
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTD 41
+G GRIG V R L DV L D +
Sbjct: 191 AMH-VGTVAAGRIGLAVLR-RLAPFDVHLHY-TDRHRLPE 227
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A
{Streptococcus agalactiae serogroup V}
Length = 329
Score = 34.5 bits (80), Expect = 0.017
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33
+ KV+ G+ ++ + + E+VAV
Sbjct: 3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAV 35
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 34.5 bits (80), Expect = 0.017
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTD 41
G+ +GI G GR+G+ VA + ++ DP+++
Sbjct: 168 GET-LGIIGLGRVGQAVAL-RAKAFGFNVLF-YDPYLSDG 204
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase,
probable hydrolase, PS aeruginosa, structurual genomics;
2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Length = 340
Score = 34.4 bits (80), Expect = 0.017
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 2/46 (4%)
Query: 129 DAPMFVVGVNENEYK--PELNIVSNASCTTNCLAPLAKVIHDKFGI 172
AP +V VN ++S+ L + +
Sbjct: 106 VAPPVMVSVNAERLASQAAPFLLSSPCAVAAELCEVLAPLLATLDC 151
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Length = 325
Score = 34.5 bits (80), Expect = 0.018
Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 24/121 (19%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDD------VELVAVNDPFITTDYMTYMFKYDSVHG 54
M +++I + G G +G V R+I + +++V V+D
Sbjct: 2 MKEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSD----------------SRS 45
Query: 55 QWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHL 114
L + + ++ PE++ A+ +V+ T D + +
Sbjct: 46 YASGRNLDISSIISNKEKTGRISDRAFSGPEDL--MGEAADLLVDCTPASRDGVREYSLY 103
Query: 115 K 115
+
Sbjct: 104 R 104
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 34.0 bits (78), Expect = 0.019
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 8 INGFGRIGRLVARVILQRDDVELVAV-NDP 36
I G GRIG + R + +
Sbjct: 44 ILGMGRIGTGAYDELRARYGKISLGIEIRE 73
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural
genomics; 2.70A {Thermus thermophilus}
Length = 331
Score = 34.4 bits (80), Expect = 0.020
Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 15/112 (13%)
Query: 67 KTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126
L F + + V E +P + V+ S G + KA +GGA +++
Sbjct: 41 VRLAFRGEEIPV------EPLPEGPLPVDLVLASAGGGISRAKALVWAEGGA--LVVDNS 92
Query: 127 S-----KDAPMFVVGVNENEYKPELNIVSNASCTT-NCLAPLAKVIHDKFGI 172
S P+ V VN + I++N +CTT L +H F
Sbjct: 93 SAWRYEPWVPLVVPEVNREKIFQHRGIIANPNCTTAILAMAL-WPLHRAFQA 143
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 34.2 bits (79), Expect = 0.021
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTD 41
GK IG G GRIG+L+ + L+ L+ +D
Sbjct: 164 GKT-IGTVGAGRIGKLLLQ-RLKPFGCNLLY-HDRLQMAP 200
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE
AMP; 1.79A {Escherichia coli k-12}
Length = 140
Score = 33.3 bits (77), Expect = 0.023
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 8 INGFGRIGRLVARVILQRDDVELVAV-NDP 36
+ G+GR+G L+ L D+ LV +
Sbjct: 12 LVGYGRVGSLLGEK-LLASDIPLVVIETSR 40
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2,
NYSGXRC, 11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 33.8 bits (78), Expect = 0.028
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 3 KVKIGINGFGRIGR-LVARVILQRDDVELVAVNDP 36
+ I + G+G +G+ A +I + L V
Sbjct: 7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASR 41
>1ydw_A AX110P-like protein; structural genomics, protein structure
initiative, center for eukaryotic structural genomics,
CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP:
c.2.1.3 d.81.1.5 PDB: 2q4e_A
Length = 362
Score = 33.9 bits (78), Expect = 0.028
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33
+++IG+ G I R V+R I + + V
Sbjct: 6 QIRIGVMGCADIARKVSRAIHLAPNATISGV 36
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 33.7 bits (78), Expect = 0.029
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTD 41
GK IGI GFGRIG V I ++++A D +
Sbjct: 142 GKT-IGIVGFGRIGTKVGI-IANAMGMKVLA-YDILDIRE 178
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG,
protein structure initiative, joint center for
structural G oxidoreductase; HET: NAD; 1.90A
{Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB:
1h2h_A*
Length = 253
Score = 33.5 bits (76), Expect = 0.037
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35
+ + I G G IG+ + + + E + D
Sbjct: 12 HMTVLIIGMGNIGKKLVELG----NFEKIYAYD 40
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine
biosynthesis, NADP+ oxidoreductase (phosphorylating),
domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3
d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A
1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A*
1pu2_A* 1q2x_A*
Length = 367
Score = 33.3 bits (77), Expect = 0.042
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 19/118 (16%)
Query: 67 KTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKD---KAAAHLKGGAKKVII 123
FG T+ + E A + +V G + K G + I
Sbjct: 43 AAPSFGGTTGTLQDAFDLE----ALKALDIIVTCQGGDYTNEIYPKLRES---GWQGYWI 95
Query: 124 SAPS-----KDAPMFVVGVNENEYKPELN----IVSNASCTTNCLAPLAKVIHDKFGI 172
A S DA + + VN++ LN +CT + + + +
Sbjct: 96 DAASSLRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLV 153
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS
protein structure initiative, midwest center for
structural genomics; HET: MSE; 1.90A {Thermoplasma
volcanium GSS1} PDB: 3jsa_A*
Length = 331
Score = 33.4 bits (77), Expect = 0.045
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDD-------VELVAVND 35
M + + I G G +G + R+I ++ +V V D
Sbjct: 4 MKTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVAD 45
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 32.7 bits (75), Expect = 0.066
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
+KI + G R + + + +A P
Sbjct: 2 SLKICVIGSSGHFRYALEGLDEECSITGIAPGVP 35
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 32.7 bits (75), Expect = 0.069
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37
+ G+ G G++G + V L+ +++ DP
Sbjct: 116 ERT-YGVVGAGQVGGRLVEV-LRGLGWKVLV-CDPP 148
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle
structural genomics center for infectious disease
(ssgcid); 1.55A {Burkholderia thailandensis}
Length = 377
Score = 32.6 bits (75), Expect = 0.071
Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 13/115 (11%)
Query: 67 KTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126
K F + T+ + + + ++ G D G I A
Sbjct: 46 KAPSFAKNETTLKDATSID----DLKKCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAA 101
Query: 127 S-----KDAPMFVVGVNENEYKPELN----IVSNASCTTNCLAPLAKVIHDKFGI 172
S DA + + VN N K L +CT + + + + +
Sbjct: 102 SSLRMKDDAVIILDPVNLNVIKDALVNGTKNFIGGNCTVSLMLMALGGLFRENLV 156
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 32.6 bits (75), Expect = 0.075
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK ++GI G GRIG VA
Sbjct: 164 GK-RVGIIGLGRIGLAVAE 181
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 32.6 bits (75), Expect = 0.077
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK +IG+ G G+IGR +A
Sbjct: 171 GK-RIGVLGLGQIGRALAS 188
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein
translocation, periplasmic oxidoreductase, signal
peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas
mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A*
1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Length = 433
Score = 32.8 bits (75), Expect = 0.078
Identities = 4/32 (12%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 3 KVKIGINGFGRIGRL-VARVILQRDDVELVAV 33
+ I G G+ + + A+
Sbjct: 83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEAL 114
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 32.6 bits (75), Expect = 0.081
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK +GI G+G IGR VA
Sbjct: 122 GKA-LGILGYGGIGRRVAH 139
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics,
protein structure initiative, PSI, joint center for
structu genomics; HET: NAD PG4; 2.27A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.3
Length = 228
Score = 32.2 bits (74), Expect = 0.081
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVA 32
+K GI G GR+G+ + +V ELV
Sbjct: 10 HHHMKYGIVGYSGRMGQEIQKVF-SEKGHELVL 41
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP,
oxidoreductase-oxidoreductase inhibitor complex; HET:
NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Length = 370
Score = 32.6 bits (75), Expect = 0.083
Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 13/115 (11%)
Query: 67 KTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126
FG+ + + E + + V+ G + A + G K I A
Sbjct: 42 PAPNFGKDAGMLHDAFDIE----SLKQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAA 97
Query: 127 S-----KDAPMFVVGVNENEYKPEL----NIVSNASCTTNCLAPLAKVIHDKFGI 172
S K+A + + VN + + +CT + + ++++ +
Sbjct: 98 STLRMDKEAIITLDPVNLKQILHGIHHGTKTFVGGNCTVSLMLMALGGLYERGLV 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.087
Identities = 47/263 (17%), Positives = 80/263 (30%), Gaps = 83/263 (31%)
Query: 7 GINGFGRIGRLVARVILQRDDVELVAVNDPF--ITTDYMTYMFKYDSVHGQ--WKHHELK 62
G G + G + A I + D E F +T +F + V + + L
Sbjct: 269 GATGHSQ-GLVTAVAIAETDSWE------SFFVSVRKAITVLF-FIGVRCYEAYPNTSLP 320
Query: 63 ---VKDDKTLLFGEK-PVTVFGVRN--PEEIPWAETGAEYVVESTGVFTDKDKAAA-HLK 115
++D E P + + N E++ + V T K L
Sbjct: 321 PSILEDSLEN--NEGVPSPMLSISNLTQEQV-------QDYVNKTNSHLPAGKQVEISLV 371
Query: 116 GGAKKVIISAPSKD------------APMFVVGVNEN-----EYKPE-----LNIVSNAS 153
GAK +++S P + AP G++++ E K + L + +
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPS---GLDQSRIPFSERKLKFSNRFLPV--ASP 426
Query: 154 CTTNCLAP-LAKVIHD--KFGI---VEGLMTTVHSITATQKTVDGPSSKDWRGL------ 201
++ L P + D K + + + V+ T DG D R L
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD------TFDG---SDLRVLSGSISE 477
Query: 202 ----ACFEWKTDW---YGFPCTH 217
W F TH
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATH 500
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 32.2 bits (74), Expect = 0.090
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
+G G G IG +A
Sbjct: 145 NA-TVGFLGMGAIGLAMAD 162
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 32.2 bits (74), Expect = 0.090
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSV 52
+G+ G G IG++ + I++ +++ D F + + DS+
Sbjct: 149 VGVVGTGHIGQVFMQ-IMEGFGAKVIT-YDIFRNPELEKKGYYVDSL 193
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 32.2 bits (74), Expect = 0.093
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
G+ K+ + G G IG V +
Sbjct: 124 GE-KVAVLGLGEIGTRVGK 141
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 32.3 bits (74), Expect = 0.094
Identities = 9/19 (47%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK I G GRIG V
Sbjct: 164 GKT-IATIGAGRIGYRVLE 181
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 32.3 bits (74), Expect = 0.10
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
G V +G G G I + +AR
Sbjct: 163 GHV-LGAVGLGAIQKEIAR 180
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 32.2 bits (74), Expect = 0.11
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 2 GKVKIGINGFGRIGRLVARV 21
G+ +GI G+G+IG+LVA
Sbjct: 160 GQT-LGIFGYGKIGQLVAGY 178
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 32.1 bits (74), Expect = 0.12
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK +GI G G IG+ +AR
Sbjct: 146 GKK-VGILGMGAIGKAIAR 163
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 31.8 bits (73), Expect = 0.14
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
G+ ++GI G GRIGR +A
Sbjct: 173 GR-RLGIFGMGRIGRAIAT 190
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 31.9 bits (73), Expect = 0.14
Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 34/130 (26%)
Query: 79 FGVRNPEEIPWAETGAEYVVESTG----------VFT--DKDKAAAHLKGGAKK--VIIS 124
+ ET + VV+ VF+ D D A K + ++S
Sbjct: 63 DAASWKQTETLPETEQDIVVQECKPEGNFLECDVVFSGLDADVAGDIEKSFVEAGLAVVS 122
Query: 125 APS-----KDAPMFVVGVN---------------ENEYKPELNIVSNASCTTNCLAPLAK 164
KD P+ V VN K I+ ++C+T L K
Sbjct: 123 NAKNYRREKDVPLVVPIVNPEHIDVVENKVKQAVSKGGKKPGFIICISNCSTAGLVAPLK 182
Query: 165 VIHDKFGIVE 174
+ +KFG ++
Sbjct: 183 PLVEKFGPID 192
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Escherichia coli k-12}
Length = 345
Score = 31.5 bits (72), Expect = 0.16
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 4 VKIGINGFGRIGRLV-ARVILQRDDVELVAV 33
+ GFG+ +L R D VA
Sbjct: 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAH 33
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 31.8 bits (73), Expect = 0.16
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK IGI G GRIG+ +A+
Sbjct: 150 GK-TIGIIGLGRIGQAIAK 167
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 31.5 bits (72), Expect = 0.18
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDS 51
+G+ G GRIG VA ++++ D D Y S
Sbjct: 141 RLT-LGVIGTGRIGSRVAM-YGLAFGMKVLC-YDVVKREDLKEKGCVYTS 187
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 31.5 bits (72), Expect = 0.20
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 38
+ IGI G G +G + L+ + + DP
Sbjct: 119 DRT-IGIVGVGNVGSRLQTR-LEALGIRTLL-CDPPR 152
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding,
oxidoreductase-oxidoreductase I complex; HET: 25A L14;
1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A*
2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A*
3q1l_A
Length = 366
Score = 31.4 bits (72), Expect = 0.20
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 128 KDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 172
D P+ V VN + I++ +C+T + + + K+G+
Sbjct: 102 PDVPLVVPEVNAHALDAHNGIIACPNCSTIQMMVALEPVRQKWGL 146
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET:
NAP; 2.29A {Methanocaldococcus jannaschii}
Length = 354
Score = 31.4 bits (72), Expect = 0.21
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 147 NIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
I++N +C+T C K I DKFG+ + T
Sbjct: 150 AIITNPNCSTICAVITLKPIMDKFGLEAVFIAT 182
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker,
ancillary protein KEFF; potassium channel regulation,
domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia
coli} PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 31.3 bits (71), Expect = 0.21
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 8 INGFGRIGRLVARVILQRDDVELVAV-NDP 36
I GFGR G++ R +L V++V + +DP
Sbjct: 9 IAGFGRFGQITGR-LLLSSGVKMVVLDHDP 37
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP
binding binding protein; HET: TLO NAP; 1.71A
{Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A*
3rc7_A* 3rc9_A*
Length = 350
Score = 31.1 bits (71), Expect = 0.21
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 1 MGKVKIGINGFGRIG-RLVARVILQRDDVELVAV 33
+++G+ G I R + E+ A+
Sbjct: 25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAI 58
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 31.0 bits (71), Expect = 0.23
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
+GI G GRIG+ +AR
Sbjct: 155 QS-TVGIIGLGRIGQAIAR 172
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Length = 393
Score = 31.2 bits (71), Expect = 0.23
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 1 MGKVKIGINGFGRIG-------RLVARVILQRDDVELVAVNDP 36
M + IG+ G G +G V V + LV + +
Sbjct: 23 MKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEA 65
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 31.0 bits (71), Expect = 0.24
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
K +GI GFG IG+ +A+
Sbjct: 146 NK-TLGIYGFGSIGQALAK 163
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 31.0 bits (71), Expect = 0.25
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
G +G+ G GRIG+ VA+
Sbjct: 144 GL-TLGLVGMGRIGQAVAK 161
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 30.0 bits (68), Expect = 0.31
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33
+ + + G GR G + + L R E++AV
Sbjct: 4 IKNKQFAVIGLGRFGGSIVK-ELHRMGHEVLAV 35
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase;
1.70A {Thermus thermophilus}
Length = 332
Score = 30.6 bits (70), Expect = 0.35
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDD--------VELVAV 33
M +KI + G G +G ++L+R + + V
Sbjct: 1 MEALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGV 41
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI;
HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3
d.81.1.5
Length = 340
Score = 30.3 bits (69), Expect = 0.40
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 1 MGKVKIGINGFGRIGR-LVARVILQRDDV-ELVAVND 35
+ K+++GI G G R L + + E+ AV
Sbjct: 16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTS 52
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change,
half-OF-sites-reactivity, protein evolution, sequence
homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A*
2r00_C*
Length = 336
Score = 30.1 bits (69), Expect = 0.43
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 128 KDAPMFVVGVNEN---EYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 172
D P+ V VN E++ NI++N +C+T + K I+D GI
Sbjct: 103 YDIPLVVPEVNPEAIAEFRNR-NIIANPNCSTIQMLVALKPIYDAVGI 149
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A
{Bacillus subtilis} SCOP: c.1.4.1
Length = 240
Score = 30.0 bits (67), Expect = 0.49
Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 17/113 (15%)
Query: 6 IGINGFGRIGRLV-ARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL--- 61
N + L A L DD+ A ++ + Y G E
Sbjct: 121 CIANPDCKAAALTEADADLNMDDIVAYA-----RVSELLQLPIFYLEYSGVLGDIEAVKK 175
Query: 62 --KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAA 112
V + TL +G G+++ E A+ +V V+ D D+A
Sbjct: 176 TKAVLETSTLFYG------GGIKDAETAKQYAEHADVIVVGNAVYEDFDRALK 222
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 29.0 bits (65), Expect = 0.55
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAV 33
I + G G+IG+++A ++ + +
Sbjct: 7 NICVVGAGKIGQMIAALLKTSSNYSVTVA 35
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella
melitensis biovar abortus 230ORGANISM_TAXID} PDB:
3upy_A*
Length = 446
Score = 30.2 bits (67), Expect = 0.55
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35
++IG+ G G +G + + + +E+ A++
Sbjct: 23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSA 55
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 29.3 bits (66), Expect = 0.61
Identities = 2/24 (8%), Positives = 6/24 (25%), Gaps = 1/24 (4%)
Query: 10 GFGRIGRLVARVILQRDDVELVAV 33
G + L + + +
Sbjct: 10 GHSILAINTIL-QLNQRGQNVTVI 32
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural
genomics, midwest cente structural genomics; 2.15A
{Thiobacillus denitrificans}
Length = 444
Score = 29.5 bits (67), Expect = 0.80
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDD 27
M + +G+ G G +G V+ + +
Sbjct: 8 MKPIHVGLLGLGTVGGGTLTVLRRNAE 34
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid
biosynthesis, diaminopimelate biosynthesis, lysine
biosynthesis; HET: SO4; 1.95A {Mycobacterium
tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Length = 344
Score = 29.4 bits (67), Expect = 0.84
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 147 NIVSNASCTTNCLAPLAKVIHDKFGI 172
I++N +CTT P+ KV+HD+ +
Sbjct: 122 GIIANPNCTTMAAMPVLKVLHDEARL 147
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 29.2 bits (65), Expect = 0.86
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
+ + G GR+G VAR ++
Sbjct: 157 NVAVLGLGRVGMSVAR-KFAALGAKVKVGARE 187
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine
dehydrogenase, structural G joint center for structural
genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Length = 327
Score = 29.1 bits (66), Expect = 0.96
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDD--------VELVAVND 35
G +KI I GFG +G+ VA +++++ + ++ AV D
Sbjct: 1 GMIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVAD 42
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 29.2 bits (66), Expect = 1.1
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKH 58
G+ ++ I G G+IG+ +A + ++ VN D+ + +
Sbjct: 137 GQ-QLLIYGTGQIGQSLAA-KASALGMHVIGVNTTGHPADHFHETVAFTATADALAT 191
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 28.4 bits (64), Expect = 1.2
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAV-NDP 36
G+ + + G G + R L +++AV
Sbjct: 5 GRYEYIVIGSEAAGVGLVRE-LTAAGKKVLAVDKSK 39
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 29.0 bits (64), Expect = 1.3
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34
MGK + + G G + + V + DD+ +
Sbjct: 22 MGK-NVLLLGSGFVAQPVIDTLAANDDINVTVAC 54
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 28.7 bits (65), Expect = 1.4
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK +GI G+G IG V
Sbjct: 156 GK-TLGIVGYGNIGSQVGN 173
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 28.4 bits (64), Expect = 1.7
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK K+GI G+G IG +
Sbjct: 145 GK-KLGIIGYGHIGTQLGI 162
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia
reductive methylation, structural genomics, PSI-2,
protein initiative; HET: MLY; 2.00A {Streptococcus
pneumoniae} PDB: 2ho5_A
Length = 325
Score = 28.1 bits (63), Expect = 2.5
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33
+K+G+ G G I + +LVA+
Sbjct: 2 LKLGVIGTGAISHHFIEAAHTSGEYQLVAI 31
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 28.0 bits (63), Expect = 2.6
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 6 IGINGFGRIGRLVAR 20
+G+ G GRIGR+ A+
Sbjct: 149 VGVVGLGRIGRVAAQ 163
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 27.5 bits (61), Expect = 2.8
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 12 GRIGRLVARVILQRDDVELVAV 33
G+I R V + + ++
Sbjct: 33 GQIARHVINQLADKQTIKQTLF 54
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 27.6 bits (62), Expect = 3.0
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 6 IGINGFGRIGRLVAR 20
+G+ G G IG++ +
Sbjct: 148 VGVMGTGHIGQVAIK 162
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 27.3 bits (60), Expect = 3.6
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 1 MGKVKI-GINGFGRIGRLVARVILQRDDVELVAV 33
+ I G G +I + + +L D+ +
Sbjct: 5 YXYITILGAAG--QIAQXLTATLLTYTDMHITLY 36
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 27.0 bits (61), Expect = 5.1
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 92 TGAEYVVESTGVFTDKDKAAAHLKGG 117
TG Y + G+FT K LK G
Sbjct: 228 TGQTYNADRLGIFTPKQVDRTELKCG 253
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 26.6 bits (59), Expect = 5.7
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 76 VTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKG 116
VT VR+PE+I + + D+ KG
Sbjct: 31 VTAV-VRHPEKIKIENEHLKVKK---ADVSSLDEVCEVCKG 67
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 27.0 bits (61), Expect = 5.8
Identities = 10/26 (38%), Positives = 10/26 (38%)
Query: 92 TGAEYVVESTGVFTDKDKAAAHLKGG 117
TG EY V G T K L G
Sbjct: 230 TGKEYEVTEVGAQTPKMTKFDKLSAG 255
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW
YORK structural genomix research consortium, NYSGXRC,
PSI-2; 2.60A {Bradyrhizobium japonicum}
Length = 383
Score = 26.7 bits (59), Expect = 6.0
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQR 25
+ ++G+ G GR+ L R
Sbjct: 2 LTTQRLGLIMNGVTGRMGLNQHLIR 26
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 26.7 bits (58), Expect = 6.3
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33
+ I + G G + +A+ L R +V V
Sbjct: 8 IEDTPIVLIGAGNLATNLAKA-LYRKGFRIVQV 39
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer,
oxidoreductase; HET: NAD; 2.30A {Saccharomyces
cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A*
1q7g_A*
Length = 358
Score = 26.5 bits (59), Expect = 7.0
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 3 KVKIGINGFGRIGRLVARVIL-QRDDVELVAV 33
V + + G G +G +L + + V
Sbjct: 4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLV 35
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric
dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A
{Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Length = 334
Score = 26.5 bits (59), Expect = 7.2
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 4 VKIGINGFGRIGRLVARVI--LQRDDVELVAV 33
++ GI G I V+ L R + ++VAV
Sbjct: 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAV 34
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 26.5 bits (58), Expect = 7.3
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
+K+ I G G IGR +A + DV + VN+ + V ++
Sbjct: 16 HMKVLILGAGNIGRAIAWDLKDEFDVYIGDVNNE-----------NLEKVKEFATPLKVD 64
Query: 63 VKDDKTL 69
+ L
Sbjct: 65 ASNFDKL 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.426
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,466,058
Number of extensions: 202602
Number of successful extensions: 773
Number of sequences better than 10.0: 1
Number of HSP's gapped: 662
Number of HSP's successfully gapped: 153
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)