BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027807
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By
Molecular Replacement
Length = 227
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 7/164 (4%)
Query: 37 FEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPG 96
+E+R Y + W+S V E + + A GF +L YIQG N +I MT+P+ + + PG
Sbjct: 60 YEIRHYGPAKWVSTSV-ESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPG 118
Query: 97 AGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEA 156
+GP ++LY+P + Q DPP PL E + + V VR F GF+ + ++
Sbjct: 119 SGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQL 177
Query: 157 DNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWV 200
L+ LR + D Y A Y+ P++ + R NE+W+
Sbjct: 178 LTLASILRE----DGKVFDEK-VYYTAGYNSPVKLLNRNNEVWL 216
>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8J|B Chain B, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8K|A Chain A, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|B Chain B, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|C Chain C, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|D Chain D, Crystal Structure Of Human Soul Protein (Hexagonal Form)
Length = 212
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 7/164 (4%)
Query: 37 FEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPG 96
+E+R Y + W+S V E + + A GF +L YIQG N +I MT+P+ + + PG
Sbjct: 41 YEIRHYGPAKWVSTSV-ESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPG 99
Query: 97 AGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEA 156
+GP ++LY+P + Q DPP PL E + + V VR F GF+ + ++
Sbjct: 100 SGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQL 158
Query: 157 DNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWV 200
L+ LR + D Y+ A Y+ P++ + R NE+W+
Sbjct: 159 LTLASILRE----DGKVFDEKVYYT-AGYNSPVKLLNRNNEVWL 197
>pdb|4AYZ|B Chain B, X-Ray Structure Of Human Soul
Length = 208
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 7/164 (4%)
Query: 37 FEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPG 96
+E+R Y + W+S V E + A GF +L YIQG N +I T+P+ + + PG
Sbjct: 41 YEIRHYGPAKWVSTSV-ESXDWDSAIQTGFTKLNSYIQGKNEKEXKIKXTAPVTSYVEPG 99
Query: 97 AGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEA 156
+GP S ++LY+P + Q DPP PL E + + V VR F GF+ + ++
Sbjct: 100 SGPFESSTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEXTVFVRSFDGFSSAQKNQEQL 158
Query: 157 DNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWV 200
L+ LR + D Y A Y+ P++ + R NE+W+
Sbjct: 159 LTLASILRE----DGKVFDE-KVYYTAGYNSPVKLLNRNNEVWL 197
>pdb|4AYZ|A Chain A, X-Ray Structure Of Human Soul
Length = 208
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 7/164 (4%)
Query: 37 FEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPG 96
+E+R Y + W+S V E + A GF +L YIQG N +I T+P+ + + PG
Sbjct: 41 YEIRHYGPAKWVSTSV-ESXDWDSAIQTGFTKLNSYIQGKNEKEXKIKXTAPVTSYVEPG 99
Query: 97 AGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEA 156
+GP ++LY+P + Q DPP PL E + + V VR F GF+ + ++
Sbjct: 100 SGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEXTVFVRSFDGFSSAQKNQEQL 158
Query: 157 DNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWV 200
L+ LR + D Y A Y+ P++ + R NE+W+
Sbjct: 159 LTLASILRE----DGKVFDE-KVYYTAGYNSPVKLLNRNNEVWL 197
>pdb|2HVA|A Chain A, Solution Structure Of The Haem-Binding Protein P22hbp
Length = 192
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 68 RLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIH 127
++ +Y+ G N + MT P+ ++ P V +P++FQ PP P E
Sbjct: 63 KIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDE-S 121
Query: 128 LNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSP 187
+ E + V +F G+A + V A L +L +P ++ G Y A Y P
Sbjct: 122 VKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP-----ATYQGDVYYCAGYDP 176
Query: 188 PLQFIGRVNEIWV 200
P++ GR NE+W+
Sbjct: 177 PMKPYGRRNEVWL 189
>pdb|4A1M|A Chain A, Nmr Structure Of Protoporphyrin-Ix Bound Murine P22hbp
Length = 195
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 68 RLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIH 127
++ +Y+ G N + MT P+ ++ P V +P++FQ PP P E
Sbjct: 66 KIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDE-S 124
Query: 128 LNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSP 187
+ E + V +F G+A + V A L +L +P ++ G Y A Y P
Sbjct: 125 VKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP-----ATYQGDVYYCAGYDP 179
Query: 188 PLQFIGRVNEIWV 200
P++ GR NE+W+
Sbjct: 180 PMKPYGRRNEVWL 192
>pdb|2GOV|A Chain A, Solution Structure Of Murine P22hbp
Length = 195
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 68 RLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIH 127
++ +Y+ G N + MT P+ ++ P V +P++FQ PP P E
Sbjct: 66 KIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDE-S 124
Query: 128 LNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSP 187
+ E + V +F G+A + V A L +L +P ++ G Y A Y P
Sbjct: 125 VKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP-----ATYQGDVYYCAGYDP 179
Query: 188 PLQFIGRVNEIWV 200
P++ GR NE+W+
Sbjct: 180 PMKPYGRRNEVWL 192
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 56 LSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAG 98
LSF K +LLGF + Q I G L SR+ P TS PG G
Sbjct: 95 LSF-KESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQG 136
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 56 LSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAG 98
LSF K +LLGF + Q I G L SR+ P TS PG G
Sbjct: 95 LSF-KESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQG 136
>pdb|3QZ4|A Chain A, Crystal Structure Of An Endo-1,4-Beta-Xylanase D (Bt_3675)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.74 A
Resolution
pdb|3QZ4|B Chain B, Crystal Structure Of An Endo-1,4-Beta-Xylanase D (Bt_3675)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.74 A
Resolution
Length = 311
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 72 YIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYL 111
Y GA LN+ +++ L P G L +YAY Y+
Sbjct: 161 YXAGAELNDDXLSIKEETTVVLTPKGGTLQTYAYREAPYV 200
>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human
Plasma Coagulation Factor Xi Zymogen
Length = 625
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 167 PWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWVDIDVSGIN 208
P N T++ SGY++ + Q +I+VD+D+ GIN
Sbjct: 87 PRVNRTAAISGYSFKQCSH----QISACNKDIYVDLDMKGIN 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,352,577
Number of Sequences: 62578
Number of extensions: 245709
Number of successful extensions: 495
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 13
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)