Query 027807
Match_columns 218
No_of_seqs 133 out of 489
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 02:37:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b0y_A Heme-binding protein 2; 100.0 3.5E-59 1.2E-63 395.4 21.3 197 2-205 12-221 (227)
2 2gov_A P22HBP, heme-binding pr 100.0 3.9E-58 1.3E-62 381.7 18.6 179 18-203 13-195 (195)
3 3r8j_A Heme-binding protein 2; 100.0 1.9E-57 6.7E-62 381.6 20.5 180 18-204 18-201 (212)
4 1jyh_A DNA gyrase inhibitory p 98.5 3.9E-06 1.3E-10 63.2 14.8 149 36-204 2-154 (157)
5 3e0h_A Uncharacterized protein 98.4 3.6E-05 1.2E-09 59.5 18.1 146 36-205 8-158 (158)
6 3b49_A LIN2189 protein; BIG 86 96.9 0.056 1.9E-06 43.8 16.0 160 35-203 23-211 (211)
7 1r8e_A Multidrug-efflux transp 96.6 0.072 2.4E-06 44.6 14.3 151 34-203 121-277 (278)
8 3lur_A Putative bacterial tran 93.8 0.63 2.2E-05 35.4 10.2 71 127-204 86-158 (158)
9 1d5y_A ROB transcription facto 93.6 2.6 9E-05 34.8 15.1 72 126-205 210-288 (292)
10 3gk6_A Integron cassette prote 90.3 1.9 6.7E-05 33.4 9.3 65 127-203 104-170 (170)
11 3e0h_A Uncharacterized protein 86.6 4.5 0.00015 30.1 8.9 70 127-204 8-79 (158)
12 3b49_A LIN2189 protein; BIG 86 77.1 12 0.00043 29.5 8.5 44 126-169 23-72 (211)
13 1jyh_A DNA gyrase inhibitory p 67.0 30 0.001 24.3 8.6 70 127-204 2-73 (157)
14 1r8e_A Multidrug-efflux transp 54.9 21 0.00073 29.1 5.8 71 126-204 122-196 (278)
15 2q3l_A Uncharacterized protein 37.0 68 0.0023 23.2 5.5 41 127-167 10-50 (126)
16 1d5y_A ROB transcription facto 32.4 1.9E+02 0.0066 23.1 8.6 58 126-189 124-185 (292)
17 2ook_A Hypothetical protein; s 30.5 1.1E+02 0.0039 22.0 5.8 39 127-165 10-48 (127)
No 1
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.5e-59 Score=395.38 Aligned_cols=197 Identities=29% Similarity=0.512 Sum_probs=162.0
Q ss_pred cccchhHHHHHHHhhh---------hcCCCCCCCCeEEEee----cCCeEEEEeCCCeEEEEEecccccHhHHHHHHHHH
Q 027807 2 ERASKLMKLSTLLCMV---------VLCKAIESPQYAVVHE----ESDFEVRLYSQSTWMSARVREELSFAKATLLGFHR 68 (218)
Q Consensus 2 ~~~~~~~~~~~~~~~~---------~~c~~~e~P~Y~Vl~~----~~~yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~ 68 (218)
|+++-+-+||.++.++ +.|.+.|||+|+||++ .++||||+|++++||+|++. +.++++|...||++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~-~~~~~~A~~~gF~~ 90 (227)
T 4b0y_A 12 ESTSLYKKAGTMAEPLQPDPGAAEDAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVE-SMDWDSAIQTGFTK 90 (227)
T ss_dssp -----------------------------CCBCCCEECCC------CCSEEEEECCEEEEEEEEE-ESCHHHHHHHHHHH
T ss_pred chhhhhhhcceEEecCCCCcccccccccCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEe-CCCHHHHHHHHHHH
Confidence 6777778899999884 5578999999999999 89999999999999999998 88999999999999
Q ss_pred HHHhhhccCCCCCccCCCcceEEEEecCCCCCccceEEEEEEecCCCCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccC
Q 027807 69 LFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAI 148 (218)
Q Consensus 69 L~~YI~G~N~~~~~i~MT~PV~~~~~~~~~~~~~~~~t~sf~lP~~~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t 148 (218)
|++||+|+|+++++|+||+||++++.+++++.|++.++|+|+||++||++||+|+ |++|+|+++|+++|||++|+|+++
T Consensus 91 L~~YI~G~N~~~~kI~MTaPV~t~~~p~~~~~~~~~~tvsF~lP~~~q~~pP~P~-D~~V~i~~~p~~~vaVr~FsG~~~ 169 (227)
T 4b0y_A 91 LNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEMTVFVRSFDGFSS 169 (227)
T ss_dssp HHHHHHTCBTTCCCCCCBSCEEEEEECCC--CCCEEEEEEEECCGGGSSSCCCBS-SSSEEEEEECCEEEEEEEESSCCC
T ss_pred HHHHhhcCCCCCCccccccCEEEEEecCCCcccCceEEEEEEcChhhccCCCCCC-CCceEEEEeCCEEEEEEEecCcCC
Confidence 9999999999999999999999999998888899999999999999999999999 899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCCCCCCCceeEEEEeecC
Q 027807 149 DEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWVDIDVS 205 (218)
Q Consensus 149 ~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEV~i~v~~~ 205 (218)
++++.+++++|+++|+++|+.+ ..+.|++|+||+||++++|||||||.++..
T Consensus 170 ~~~~~~~~~~L~~~L~~~g~~~-----~~~~y~~A~Yd~P~t~~~RrNEVwi~~~~e 221 (227)
T 4b0y_A 170 AQKNQEQLLTLASILREDGKVF-----DEKVYYTAGYNSPVKLLNRNNEVWLIQKNE 221 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCB-----CSSCEEEEECC---CCCSSCEEEEEEBC--
T ss_pred HHHHHHHHHHHHHHHHhCCCcc-----CCCcEEEEEeCCCCCcCCceeEEEEEECCC
Confidence 9999999999999999999874 456789999999999999999999998753
No 2
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A
Probab=100.00 E-value=3.9e-58 Score=381.71 Aligned_cols=179 Identities=23% Similarity=0.412 Sum_probs=169.9
Q ss_pred hcCCCCCCCCeEEEeecCC----eEEEEeCCCeEEEEEecccccHhHHHHHHHHHHHHhhhccCCCCCccCCCcceEEEE
Q 027807 18 VLCKAIESPQYAVVHEESD----FEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSL 93 (218)
Q Consensus 18 ~~c~~~e~P~Y~Vl~~~~~----yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~ 93 (218)
+.|.+.|||+|+||++.++ ||||+|++++||+|++. ++++++|...||++|++||+|+|+++++|+||+||++++
T Consensus 13 ~~~~~~E~P~Y~Vl~~~~~~~~~yEiR~Y~~~~wa~t~~~-~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~ 91 (195)
T 2gov_A 13 SLFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVT-DKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAV 91 (195)
T ss_dssp CCCCSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEE-SSCHHHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEE
T ss_pred cccCCCCCCCeEEEEecCCCCCcEEEEEeCCeEEEEEEec-CCChhHHHHHHHHHHHHHhccCCCCCCCcccccCEEEEE
Confidence 5689999999999999887 99999999999999998 889999999999999999999999999999999999999
Q ss_pred ecCCCCCccceEEEEEEecCCCCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCC
Q 027807 94 VPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTS 173 (218)
Q Consensus 94 ~~~~~~~~~~~~t~sf~lP~~~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~ 173 (218)
.+.+++.|.+.++|+|+||++||++||+|+ |++|+|+++|++++||++|+|+++++++.+++++|+++|+++|+.+
T Consensus 92 ~p~~~~~~~~~~tvsF~lP~~~~~~pP~P~-d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~--- 167 (195)
T 2gov_A 92 FPNEDGSLQKKLKVWFRIPNQFQGSPPAPS-DESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATY--- 167 (195)
T ss_dssp EECTTSCEEEEEEEEECCCHHHHHSCCCBC-SSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHHTTTSSCCE---
T ss_pred cCCCCCCcCceEEEEEEcchhcccCCCCCC-CCceEEEEeCCeEEEEEEECCccCHHHHHHHHHHHHHHHHHCCCcc---
Confidence 888888899999999999999999999998 8999999999999999999999999999999999999999999874
Q ss_pred CCCCCcEEEEEeCCCCCCCCCceeEEEEee
Q 027807 174 SDSGYAYSVAQYSPPLQFIGRVNEIWVDID 203 (218)
Q Consensus 174 ~~~~~~~~~A~Yd~P~~~~~R~NEV~i~v~ 203 (218)
..+.|++|+||+||++++|||||||+.+
T Consensus 168 --~~~~~~~a~Yn~P~~~~~RrNEV~i~~~ 195 (195)
T 2gov_A 168 --QGDVYYCAGYDPPMKPYGRRNEVWLVKA 195 (195)
T ss_dssp --EEEEEEEEESSCCSSSSCCEEEEEEEEC
T ss_pred --cCCcEEEEEeCCCCCcCCceeEEEEEeC
Confidence 3566899999999999999999999863
No 3
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=100.00 E-value=1.9e-57 Score=381.58 Aligned_cols=180 Identities=29% Similarity=0.549 Sum_probs=168.9
Q ss_pred hcCCCCCCCCeEEEee----cCCeEEEEeCCCeEEEEEecccccHhHHHHHHHHHHHHhhhccCCCCCccCCCcceEEEE
Q 027807 18 VLCKAIESPQYAVVHE----ESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSL 93 (218)
Q Consensus 18 ~~c~~~e~P~Y~Vl~~----~~~yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~ 93 (218)
+-+.++|||+|+||++ .++||||+|++++||+|++. +.++++|...||++|++||+|+|.++++|+||+||++++
T Consensus 18 ~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~-~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~ 96 (212)
T 3r8j_A 18 AAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVE-SMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYV 96 (212)
T ss_dssp ----CCBCCCEECCSSCCCCCTTCEEEEECCEEEEEEEEE-ESCHHHHHHHHHHHHHHHHTTCBTTCCCCCCBSCEEEEE
T ss_pred hhcCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEe-CCCHHHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEE
Confidence 3457899999999999 79999999999999999998 889999999999999999999999999999999999999
Q ss_pred ecCCCCCccceEEEEEEecCCCCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCC
Q 027807 94 VPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTS 173 (218)
Q Consensus 94 ~~~~~~~~~~~~t~sf~lP~~~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~ 173 (218)
.+++++.|.+.++|+|+||++||++||+|+ |++|+|+++|+++|||++|+|+++++++.+++++|+++|+++|+.+
T Consensus 97 ~p~~~~~~~~~~tvsF~lP~~~q~~pP~P~-d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~--- 172 (212)
T 3r8j_A 97 EPGSGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVF--- 172 (212)
T ss_dssp ECTTSTTSCEEEEEEEECCHHHHSSCCCBS-STTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHHTTCCB---
T ss_pred ecCCCcccCceEEEEEEcChHHccCCCCCC-CCceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHHHHHhCCCcc---
Confidence 998888899999999999999999999999 8999999999999999999999999999999999999999999874
Q ss_pred CCCCCcEEEEEeCCCCCCCCCceeEEEEeec
Q 027807 174 SDSGYAYSVAQYSPPLQFIGRVNEIWVDIDV 204 (218)
Q Consensus 174 ~~~~~~~~~A~Yd~P~~~~~R~NEV~i~v~~ 204 (218)
..+.|++|+||+||++++|||||||.++.
T Consensus 173 --~~~~y~~A~Yd~P~t~~~RrNEVwi~~~~ 201 (212)
T 3r8j_A 173 --DEKVYYTAGYNSPVKLLNRNNEVWLIQKN 201 (212)
T ss_dssp --CSSCEEEEESSSSSCCSSSCEEEEEEBCC
T ss_pred --CCCcEEEEEeCCCCCcCCceeEEEEEeCC
Confidence 45678999999999999999999999884
No 4
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=98.54 E-value=3.9e-06 Score=63.17 Aligned_cols=149 Identities=14% Similarity=0.079 Sum_probs=99.5
Q ss_pred CeEEEEeCCCeEEEEEecccccHhHHHHHHHHHHHHhhhccCCCCCccCCCcceEEEEe--cCCCCCccceEEEEEEecC
Q 027807 36 DFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLV--PGAGPLHSYAYVVTLYLPD 113 (218)
Q Consensus 36 ~yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~~--~~~~~~~~~~~t~sf~lP~ 113 (218)
+++|+..++...+..... .++++....+|.+|++++..+|-.. .+.+.-.. +...+...-.+.+++.+|.
T Consensus 2 ~~~i~~~~~~~v~~~~~~--g~~~~~i~~~~~~l~~~~~~~~~~~------~~~~gi~~~~~~~~~~~~~~~~~~~~v~~ 73 (157)
T 1jyh_A 2 NYEIKQEEKRTVAGFHLV--GPWEQTVKKGFEQLMMWVDSKNIVP------KEWVAVYYDNPDETPAEKLRCDTVVTVPG 73 (157)
T ss_dssp CCEEEEECCEEEEEEEEE--SCHHHHHHHHHHHHHHHHHHTTCCC------SEEEEEECSCTTTSCGGGCEEEEEEEECT
T ss_pred CCEEEEeCCeEEEEEEEE--CCchhhHHHHHHHHHHHHHHcCCCC------CcEEEEECCCCCCCCHHHheEEEEEEecC
Confidence 478999999988877665 3454566789999999997665322 13332111 1111112346788888886
Q ss_pred CCCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHH-HHHhcCCCCCCCCCCCCCcEEEEEeC-CCCCC
Q 027807 114 KFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLS-FSLRRSPWANSTSSDSGYAYSVAQYS-PPLQF 191 (218)
Q Consensus 114 ~~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~A~Yd-~P~~~ 191 (218)
.... | |. ++.+.+.++|+.+++|..|.|... .+.+.-++|. ++|.++|+.. .+.+.+-.|. .|..+
T Consensus 74 ~~~~--~-~~-~~~~~~~~ip~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~~------~~~~~~E~Y~~~~~~~ 141 (157)
T 1jyh_A 74 YFTL--P-EN-SEGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYEM------LPKPCFEVYLNNGAED 141 (157)
T ss_dssp TCCC--C-SS-CTTCEEEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEEE------CSSCEEEEECSCHHHH
T ss_pred cccc--C-CC-CCCeEEEEeCCCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCcc------CCCceEEEecCCCCCc
Confidence 5432 2 32 457999999999999999999863 3566677775 8999888652 3345667774 22233
Q ss_pred CCCceeEEEEeec
Q 027807 192 IGRVNEIWVDIDV 204 (218)
Q Consensus 192 ~~R~NEV~i~v~~ 204 (218)
...+.||||+|+.
T Consensus 142 ~~~~tei~ipi~~ 154 (157)
T 1jyh_A 142 GYWDIEMYVAVQP 154 (157)
T ss_dssp SSEEEEEEEEEEE
T ss_pred ccEEEEEEEEeee
Confidence 4567799999985
No 5
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=98.43 E-value=3.6e-05 Score=59.53 Aligned_cols=146 Identities=10% Similarity=0.002 Sum_probs=98.6
Q ss_pred CeEEEEeCCCeEEEEEecccccHhH---HHHHHHHHHHHhhhccCCCCCccCCCcceEEEEecCCCCCccceEEEEEEec
Q 027807 36 DFEVRLYSQSTWMSARVREELSFAK---ATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLP 112 (218)
Q Consensus 36 ~yEiR~Y~~~~wv~t~v~~~~~~~~---a~~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~~~~~~~~~~~~~t~sf~lP 112 (218)
+++|+..++...+..... + ++.+ ...++|.+|..++..+|- ..+.|.+.-..... ..+-++.+++.++
T Consensus 8 ~v~I~~~p~~~va~ir~~-~-~~~~~~~~i~~~~~~l~~~~~~~~l-----~~~g~~~~iy~d~~--~~~~~~~~~~~v~ 78 (158)
T 3e0h_A 8 VCELKELAPVPALLIRTQ-T-TMSELGSLFEAGYHDILQLLAGQGK-----SPSGPPFARYFGMS--AGTFEVEFGFPVE 78 (158)
T ss_dssp CEEEEEECCCEEEEEEEE-E-CHHHHHHHHHHHHHHHHHHHHHTTC-----CCSSCCEEEEESCT--TSCEEEEEEEECC
T ss_pred ccEEEeeCCceEEEEEee-c-CHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCCeEEEEecCC--CcceEEEEEEEeC
Confidence 678999999998887765 2 2332 345789999999876543 23444444332211 1123455665555
Q ss_pred CCCCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCCC-C
Q 027807 113 DKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQ-F 191 (218)
Q Consensus 113 ~~~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~-~ 191 (218)
... +. +..|.+.++|+.++++.++.|...+ +.+.-++|.+||.++|+.. .+..+-..+++|.. .
T Consensus 79 ~~~------~~-~~~~~~~~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~~------~~~~~E~Y~~~p~~~~ 143 (158)
T 3e0h_A 79 GGV------EG-SGRVVTGLTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFDL------SGEAYEIYLDNPAETA 143 (158)
T ss_dssp SCC------CC-BTTBEEEECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCCE------EEEEEEEECSCTTSSC
T ss_pred CCC------CC-CCceEEEEeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCCc------CCCEEEEEeCCCCCCC
Confidence 431 22 3579999999999999999997654 7788888999999999762 33333334567775 2
Q ss_pred -CCCceeEEEEeecC
Q 027807 192 -IGRVNEIWVDIDVS 205 (218)
Q Consensus 192 -~~R~NEV~i~v~~~ 205 (218)
...+.||||+|+++
T Consensus 144 ~~~~~tei~ipv~~~ 158 (158)
T 3e0h_A 144 PDQLRTRVSLMLHES 158 (158)
T ss_dssp GGGCEEEEEEEECCC
T ss_pred HHHhEEEEEEEEcCC
Confidence 57799999999863
No 6
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=96.95 E-value=0.056 Score=43.76 Aligned_cols=160 Identities=8% Similarity=-0.001 Sum_probs=96.4
Q ss_pred CCeEEEEeCCCeEEEEEecccccHhHHHHHHHHHHHHhh------hccCCCCCc-cCCCc-ceEEEEe---cCCC-CCcc
Q 027807 35 SDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYI------QGANLNNSR-IAMTS-PIVTSLV---PGAG-PLHS 102 (218)
Q Consensus 35 ~~yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~L~~YI------~G~N~~~~~-i~MT~-PV~~~~~---~~~~-~~~~ 102 (218)
.+++|+.-++...+..... +...++....+|.+|+..+ ..++-.... -+.+. |...-.. +... +..+
T Consensus 23 ~~v~i~~~p~~~v~~i~~~-g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~~~~g~~~y~v~~~~gi~~~d~~~~~~~~~~ 101 (211)
T 3b49_A 23 RKPERIFVPEMNFLMVDGK-GDPDGEEYQKAVQSLYAIAYTIKMSKMGETRLDGYSDFVVPPLEGFWWSEGKFDLKDRDA 101 (211)
T ss_dssp SSCEEEEEEEEEEEEEEEE-SCTTSHHHHHHHHHHHHHHHHHHHGGGSCCTTTTSCCBCCCCCEEEEEESSSCCTTCGGG
T ss_pred CCcEEEEECCeeEEEEEee-cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccceeccceeEEeecCCccccCchhh
Confidence 3688888898888877665 4323335678999999987 433321111 12222 3322211 1111 2223
Q ss_pred ceEEEEEEecCCCCCC------------CCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCC
Q 027807 103 YAYVVTLYLPDKFQSD------------PPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWAN 170 (218)
Q Consensus 103 ~~~t~sf~lP~~~~~~------------~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~ 170 (218)
-.|.+++.+|...+.. .|.+. ...|.+.++|+..+++.++.|... .+.+-.+.|.++|.++|+..
T Consensus 102 ~~~~~~i~vp~~v~~~~~~~a~~~~~~~~~~~~-~~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~~wl~~~g~~~ 178 (211)
T 3b49_A 102 WLWTSILRQPDFVTEEVLEWAKEVARKKKPDVD-TSRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMHQFMETEGLRN 178 (211)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHCTTSC-CTTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHHHHHHHHTCCB
T ss_pred eEEEEEEEcCCcccHHHHHHHHHHHhccCCCCC-cccceEEEeCCceEEEEEEEcchh--hHHHHHHHHHHHHHHCCCcc
Confidence 4677788778654310 12222 357999999999999999999765 35677788889999999731
Q ss_pred CCCCCCC--CcEEEEEe-CCCCCC--CCCceeEEEEee
Q 027807 171 STSSDSG--YAYSVAQY-SPPLQF--IGRVNEIWVDID 203 (218)
Q Consensus 171 ~~~~~~~--~~~~~A~Y-d~P~~~--~~R~NEV~i~v~ 203 (218)
.. +.+.+-.| +.|... ..-+=||+++|+
T Consensus 179 -----~~~~~~~~~EiY~~dp~~~~~~~~~tei~ipV~ 211 (211)
T 3b49_A 179 -----DTGAIRKHHEIYLSDPRKANPEKMKTILRLPVS 211 (211)
T ss_dssp -----CBTTTBCEEEEECSCTTTSCGGGCEEEEEEEBC
T ss_pred -----ccCCCCcEEEEEeCCCCCCChHHeEEEEEEEeC
Confidence 12 13344444 667642 334678998874
No 7
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=96.56 E-value=0.072 Score=44.59 Aligned_cols=151 Identities=7% Similarity=-0.063 Sum_probs=90.1
Q ss_pred cCCeEEEEeCCCeEEEEEecccccHhHHH-HHHHHHHHHhhhccCCCCCccCCCcceEEEEecCC-CCCccceE-EEEEE
Q 027807 34 ESDFEVRLYSQSTWMSARVREELSFAKAT-LLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGA-GPLHSYAY-VVTLY 110 (218)
Q Consensus 34 ~~~yEiR~Y~~~~wv~t~v~~~~~~~~a~-~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~~~~~-~~~~~~~~-t~sf~ 110 (218)
..+++|+..++...+..... ..+. +.. ..+|.+|.+++...+ +..+.|+........ .+.....+ .+++.
T Consensus 121 ~~~v~I~~~p~~~v~~~~~~-~~~~-~~i~~~~~~~l~~~~~~~~-----l~~~~~~g~~~~~~~~~~~~~~~~~~~~v~ 193 (278)
T 1r8e_A 121 LGEVFVLDEEEIRIIQTEAE-GIGP-ENVLNASYSKLKKFIESAD-----GFTNNSYGATFSFQPYTSIDEMTYRHIFTP 193 (278)
T ss_dssp TTCCEEEEECCEEEEEEECT-TCCT-TTCCGGGGHHHHHHHHHHH-----SSCCCCEEEEECCCCCSCGGGCCCSEEEEE
T ss_pred CCceEEEEcCCeEEEEeecC-CCCh-HhHHHHHHHHHHHHHHHcC-----CcccCceEEEEEhHHhhcCCCcceeEEEEE
Confidence 34688999999887776552 1211 222 467888999986543 233456544332111 11001111 24444
Q ss_pred ecCCCCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCCC
Q 027807 111 LPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQ 190 (218)
Q Consensus 111 lP~~~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~ 190 (218)
++... .|.|. +..|.+..+|+..+++..+.|.. +.+.+....|.+||.++|+.. .+..+--..+.|+.
T Consensus 194 v~~~~---~~l~~-~~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~~------~g~~~E~y~~~~~~ 261 (278)
T 1r8e_A 194 VLTNK---QISSI-TPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLTV------VSDVYELIIPIHYS 261 (278)
T ss_dssp CCCCS---CCSSC-CTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCCE------EEEEEEEEEESCCC
T ss_pred ecCcc---ccccc-cCCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCcc------CCCeEEEEeecccc
Confidence 44321 11222 35689999999999999999965 456777788889999999762 33333334446664
Q ss_pred C---CCCceeEEEEee
Q 027807 191 F---IGRVNEIWVDID 203 (218)
Q Consensus 191 ~---~~R~NEV~i~v~ 203 (218)
. ..-.-||||+|+
T Consensus 262 ~~~~~~~~teI~iPv~ 277 (278)
T 1r8e_A 262 PKKQEEYRVEMKIRIA 277 (278)
T ss_dssp SSSCCCEEEEEEEEEC
T ss_pred cCChhheEEEEEEEec
Confidence 2 234679999986
No 8
>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}
Probab=93.77 E-value=0.63 Score=35.39 Aligned_cols=71 Identities=11% Similarity=0.085 Sum_probs=50.2
Q ss_pred CeeEEeeCCeEEEEEEeccccChHHHHHHHHHH-HHHHhcCCCCCCCCCCCCCcEEEEEeCCCCCC-CCCceeEEEEeec
Q 027807 127 HLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNL-SFSLRRSPWANSTSSDSGYAYSVAQYSPPLQF-IGRVNEIWVDIDV 204 (218)
Q Consensus 127 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L-~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~-~~R~NEV~i~v~~ 204 (218)
.+...++|+.++||-++.|-..+ .+.+--+.+ ..||-+.|+.. .+.+-+-.|...-.. ..-.-||||+|++
T Consensus 86 ~~~~~~ip~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~~------~~~p~fE~Y~~~~~~~~~~~~ei~iPI~~ 158 (158)
T 3lur_A 86 KYDVITLASSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANTV------KSAPFFELYQDGDTTSEKYITEIWMPVKG 158 (158)
T ss_dssp GSEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTTB------CSSCEEEEECSSCTTSTTCEEEEEEEECC
T ss_pred CcEEEEECCceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCee------CCCccEEEECCCCCCCcceEEEEEEEEcC
Confidence 57888999999999999996544 455555555 46898888663 345667778764322 4556799999864
No 9
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=93.61 E-value=2.6 Score=34.77 Aligned_cols=72 Identities=7% Similarity=0.001 Sum_probs=50.2
Q ss_pred CCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHH-HHHhcCCCCCCCCCCCCCcEEEEEeC---CCC-CCC--CCceeE
Q 027807 126 IHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLS-FSLRRSPWANSTSSDSGYAYSVAQYS---PPL-QFI--GRVNEI 198 (218)
Q Consensus 126 ~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~A~Yd---~P~-~~~--~R~NEV 198 (218)
..+...++|+.++||..+.|. .+.+.+--..|. +||.+.|+.. .+.+-+-.|. .|. ... .-.-||
T Consensus 210 ~~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~~------~~~p~~E~Y~~~~~~~~~~~~~~~~tEI 281 (292)
T 1d5y_A 210 LTGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLTR------RKGQDIERYYPAEDAKAGDRPINLRCEL 281 (292)
T ss_dssp TTCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCEE------CSSCEEEEECGGGC----CCSCEEEEEE
T ss_pred CcceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCcc------CCCCcEEEEeeccccCCCCCCCceEEEE
Confidence 358888999999999999994 456777788885 8999998652 2334455665 332 221 224599
Q ss_pred EEEeecC
Q 027807 199 WVDIDVS 205 (218)
Q Consensus 199 ~i~v~~~ 205 (218)
||+|+..
T Consensus 282 ~iPI~~k 288 (292)
T 1d5y_A 282 LIPIRRK 288 (292)
T ss_dssp EEEEECC
T ss_pred EEEeehh
Confidence 9999874
No 10
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=90.34 E-value=1.9 Score=33.37 Aligned_cols=65 Identities=11% Similarity=0.028 Sum_probs=46.5
Q ss_pred CeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCC--CCCCCCCCCCCcEEEEEeCCCCCCCCCceeEEEEee
Q 027807 127 HLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSP--WANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWVDID 203 (218)
Q Consensus 127 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g--~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEV~i~v~ 203 (218)
.+...++|+.++||-++.|-.. +.+.+--+.+..||-..| +. ..+.+-+-.|+... .-||||+|+
T Consensus 104 g~~~~~IP~g~YAVF~~~G~~p-~~i~~~w~~I~~WlP~sg~~y~------~~~~pdfE~Y~~~~-----~~eI~IpI~ 170 (170)
T 3gk6_A 104 ESVKTKVSSGKYVTFSATGEMP-QVVIDLWNEVWNYFASEHCPHK------RAYTTDFEYYKSAN-----TVEISIAVR 170 (170)
T ss_dssp TCEEEEECCEEEEEEEEESSTT-HHHHHHHHHHHHHHC---CCCC------BCCSEEEEECCSSS-----EEEEEEEBC
T ss_pred CcEEEEECCCCEEEEEecCCCH-HHHHHHHHHHHHhhhhcCCcce------ecCcCCEEEECCCC-----eEEEEEEEC
Confidence 5788899999999999999543 456666677777999888 44 34566777786532 679999985
No 11
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=86.63 E-value=4.5 Score=30.14 Aligned_cols=70 Identities=4% Similarity=-0.162 Sum_probs=47.8
Q ss_pred CeeEEeeCCeEEEEEEeccccCh--HHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCCCCCCCceeEEEEeec
Q 027807 127 HLNPFEWDSHCVAVRKFSGFAID--EVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWVDIDV 204 (218)
Q Consensus 127 ~V~i~~~p~~~v~v~~F~G~~t~--~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEV~i~v~~ 204 (218)
+|+|++.|+..++.++..|...+ ..+.+--++|.+++..+|+. ..+..+...|| +....=+=|+.+++..
T Consensus 8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~------~~g~~~~iy~d--~~~~~~~~~~~~~v~~ 79 (158)
T 3e0h_A 8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKS------PSGPPFARYFG--MSAGTFEVEFGFPVEG 79 (158)
T ss_dssp CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCC------CSSCCEEEEES--CTTSCEEEEEEEECCS
T ss_pred ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCC------CCCCeEEEEec--CCCcceEEEEEEEeCC
Confidence 69999999999999999997422 23445667799999988865 24444444445 2223446688888765
No 12
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=77.08 E-value=12 Score=29.53 Aligned_cols=44 Identities=9% Similarity=-0.167 Sum_probs=37.1
Q ss_pred CCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHH------hcCCCC
Q 027807 126 IHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSL------RRSPWA 169 (218)
Q Consensus 126 ~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L------~~~g~~ 169 (218)
.+|.|.++|+..++.++..|-+.+..+.+...+|..++ .++|+.
T Consensus 23 ~~v~i~~~p~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~~ 72 (211)
T 3b49_A 23 RKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGETR 72 (211)
T ss_dssp SSCEEEEEEEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCCT
T ss_pred CCcEEEEECCeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35899999999999999888766557888899999999 888765
No 13
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=66.98 E-value=30 Score=24.34 Aligned_cols=70 Identities=11% Similarity=0.016 Sum_probs=46.1
Q ss_pred CeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCCCC--CCCceeEEEEeec
Q 027807 127 HLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQF--IGRVNEIWVDIDV 204 (218)
Q Consensus 127 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~--~~R~NEV~i~v~~ 204 (218)
+++|++.|+..++..+..|-.. +.+.+.-++|.+++..+++. . +..+...+|.|..- ..=+-++.+.+..
T Consensus 2 ~~~i~~~~~~~v~~~~~~g~~~-~~i~~~~~~l~~~~~~~~~~------~-~~~~gi~~~~~~~~~~~~~~~~~~~~v~~ 73 (157)
T 1jyh_A 2 NYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIV------P-KEWVAVYYDNPDETPAEKLRCDTVVTVPG 73 (157)
T ss_dssp CCEEEEECCEEEEEEEEESCHH-HHHHHHHHHHHHHHHHTTCC------C-SEEEEEECSCTTTSCGGGCEEEEEEEECT
T ss_pred CCEEEEeCCeEEEEEEEECCch-hhHHHHHHHHHHHHHHcCCC------C-CcEEEEECCCCCCCCHHHheEEEEEEecC
Confidence 4789999999998888887542 45677778888888888754 1 23334455666531 1224456666653
No 14
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=54.89 E-value=21 Score=29.10 Aligned_cols=71 Identities=7% Similarity=-0.068 Sum_probs=45.3
Q ss_pred CCeeEEeeCCeEEEEEEe-ccccChHHH-HHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCCCC-CCCce-eEEEE
Q 027807 126 IHLNPFEWDSHCVAVRKF-SGFAIDEVI-VKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQF-IGRVN-EIWVD 201 (218)
Q Consensus 126 ~~V~i~~~p~~~v~v~~F-~G~~t~~~~-~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~-~~R~N-EV~i~ 201 (218)
.+|.|++.|+..++..+. .|.. ..+ .+...+|.+++.++|+. ..+.+.+..++++++. ..+.. ++.++
T Consensus 122 ~~v~I~~~p~~~v~~~~~~~~~~--~~i~~~~~~~l~~~~~~~~l~------~~~~~g~~~~~~~~~~~~~~~~~~~~v~ 193 (278)
T 1r8e_A 122 GEVFVLDEEEIRIIQTEAEGIGP--ENVLNASYSKLKKFIESADGF------TNNSYGATFSFQPYTSIDEMTYRHIFTP 193 (278)
T ss_dssp TCCEEEEECCEEEEEEECTTCCT--TTCCGGGGHHHHHHHHHHHSS------CCCCEEEEECCCCCSCGGGCCCSEEEEE
T ss_pred CceEEEEcCCeEEEEeecCCCCh--HhHHHHHHHHHHHHHHHcCCc------ccCceEEEEEhHHhhcCCCcceeEEEEE
Confidence 469999999999988887 5532 222 34456688888887754 2344544445555654 23333 68888
Q ss_pred eec
Q 027807 202 IDV 204 (218)
Q Consensus 202 v~~ 204 (218)
+..
T Consensus 194 v~~ 196 (278)
T 1r8e_A 194 VLT 196 (278)
T ss_dssp CCC
T ss_pred ecC
Confidence 765
No 15
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=37.01 E-value=68 Score=23.21 Aligned_cols=41 Identities=12% Similarity=-0.100 Sum_probs=34.5
Q ss_pred CeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCC
Q 027807 127 HLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSP 167 (218)
Q Consensus 127 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g 167 (218)
.+.|...++..+...+.+|..+.+++.+-...|.+.|++++
T Consensus 10 mi~i~~~~~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~~ 50 (126)
T 2q3l_A 10 AIGIERSQDDFYLAFKAVGKLTHEDYEQMTPLLESALAGIK 50 (126)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCC
T ss_pred eEEEEEcCCCCEEEEEEEeeECHHHHHHHHHHHHHHHHhCC
Confidence 46777778888888999999999999988888888888765
No 16
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=32.40 E-value=1.9e+02 Score=23.09 Aligned_cols=58 Identities=7% Similarity=-0.210 Sum_probs=37.0
Q ss_pred CCeeEEeeCCeEEEEEEeccccChHHHH----HHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCC
Q 027807 126 IHLNPFEWDSHCVAVRKFSGFAIDEVIV----KEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPL 189 (218)
Q Consensus 126 ~~V~i~~~p~~~v~v~~F~G~~t~~~~~----~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~ 189 (218)
.+++|++.|+..++.++..|...++.+. .....|.+.|...+.. ..+..+...||.|-
T Consensus 124 m~~~I~~~~~~~v~gi~~~~~~~~~~~~~~~~~~i~~lw~~~~~~~~~------~~~~~~gi~~d~~~ 185 (292)
T 1d5y_A 124 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT------IPPVLYGLNETRPS 185 (292)
T ss_dssp CCEEEEEECCEEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSS------CCSCEEEEEEEEEC
T ss_pred CCceEEEeCCeEEeeEEeeeccccccccccchhhhHHHHHHHhcccCC------CCCCEEEEEecCCC
Confidence 3589999999999999999875543332 4455666666654321 23345555666564
No 17
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=30.45 E-value=1.1e+02 Score=22.02 Aligned_cols=39 Identities=15% Similarity=-0.009 Sum_probs=33.1
Q ss_pred CeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhc
Q 027807 127 HLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRR 165 (218)
Q Consensus 127 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~ 165 (218)
.+.+....+..+...+.+|..+.+++++-...|.+.|++
T Consensus 10 mi~i~~~~~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~ 48 (127)
T 2ook_A 10 SIGINRIESVFFVTLKAIGTLTHEDYLVITPMLEGALSQ 48 (127)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCEEEEEEeeeECHHHHHHHHHHHHHHHhh
Confidence 466667777878888999999999999888888888888
Done!