BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027808
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ONI|A Chain A, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|B Chain B, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|C Chain C, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|D Chain D, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|E Chain E, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|F Chain F, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|G Chain G, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|H Chain H, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|I Chain I, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
Length = 138
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 94/151 (62%), Gaps = 28/151 (18%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYV 122
++ + T KAP A+GPYSQA+ + +++SG +G+ P
Sbjct: 6 IRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPS---------------------- 43
Query: 123 FESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIY 182
+G+ VS + ++ +Q LKN+GEILKA+G D+++VVKTT+LLAD+ DF TVNEIY
Sbjct: 44 ------SGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIY 97
Query: 183 AKYFPSPAPARATYQVAALPLDARVEIECIA 213
+YF S PARA YQVAALP +R+EIE +A
Sbjct: 98 KQYFKSNFPARAAYQVAALPKGSRIEIEAVA 128
>pdb|1QAH|A Chain A, Crystal Structure Of Perchloric Acid Soluble Protein-A
Translational Inhibitor
pdb|1QAH|B Chain B, Crystal Structure Of Perchloric Acid Soluble Protein-A
Translational Inhibitor
Length = 136
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 93/151 (61%), Gaps = 28/151 (18%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYV 122
+++ + T+KAPAA+G YSQA+ + ++VSG +G+ P
Sbjct: 4 IRKVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPS---------------------- 41
Query: 123 FESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIY 182
+G+ V + ++ +Q LKN+GEILKA+G D+++VVKTT+LLAD+ DF TVNEIY
Sbjct: 42 ------SGQLVPGGVAEEAKQALKNLGEILKAAGCDFTNVVKTTVLLADINDFGTVNEIY 95
Query: 183 AKYFPSPAPARATYQVAALPLDARVEIECIA 213
YF PARA YQVAALP +R+EIE IA
Sbjct: 96 KTYFQGNLPARAAYQVAALPKGSRIEIEAIA 126
>pdb|1NQ3|A Chain A, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|B Chain B, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|C Chain C, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|D Chain D, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|E Chain E, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|F Chain F, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
Length = 136
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 91/153 (59%), Gaps = 28/153 (18%)
Query: 61 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTI 120
S ++ + T KAPAA+GPYSQA+ + +++SG LG+ P
Sbjct: 2 SLVRRIISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPA-------------------- 41
Query: 121 YVFESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNE 180
+G+ V + ++ +Q L NIGEILKA+G D+++VVK T+LLAD+ DF VN+
Sbjct: 42 --------SGQLVPGGVVEEAKQALTNIGEILKAAGCDFTNVVKATVLLADINDFSAVND 93
Query: 181 IYAKYFPSPAPARATYQVAALPLDARVEIECIA 213
+Y +YF S PARA YQVAALP RVEIE IA
Sbjct: 94 VYKQYFQSSFPARAAYQVAALPKGGRVEIEAIA 126
>pdb|2CSL|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|B Chain B, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|C Chain C, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|D Chain D, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|E Chain E, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|F Chain F, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|B Chain B, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|C Chain C, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|D Chain D, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|E Chain E, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|F Chain F, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CW4|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
Length = 124
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 84/149 (56%), Gaps = 29/149 (19%)
Query: 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFE 124
EAV T++APAA+GPY+QA+KA VFVSG + L P+
Sbjct: 2 EAVKTDRAPAAIGPYAQAVKAGGFVFVSGQIPLAPD------------------------ 37
Query: 125 SPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAK 184
G V I QTE+V +N+ +L+A+G+ S VV+TT LAD +DF NE+YA+
Sbjct: 38 -----GSLVEGDIRVQTERVXENLKAVLEAAGSGLSRVVQTTCFLADXEDFPGFNEVYAR 92
Query: 185 YFPSPAPARATYQVAALPLDARVEIECIA 213
YF P PARAT V ALP RVE+ C+A
Sbjct: 93 YFTPPYPARATVAVKALPRGVRVEVACVA 121
>pdb|3L7Q|A Chain A, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|B Chain B, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|C Chain C, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|D Chain D, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|E Chain E, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|F Chain F, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|G Chain G, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|H Chain H, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|I Chain I, Crystal Structure Of Aldr From Streptococcus Mutans
Length = 125
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 81/147 (55%), Gaps = 28/147 (19%)
Query: 69 TNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQ 128
T+KAPAA+GPY Q NL+F SG + L PE
Sbjct: 6 TDKAPAAIGPYVQGKIVGNLLFASGQVPLSPE---------------------------- 37
Query: 129 TGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPS 188
TG+ + TIE+QT+QVLKNI IL +G D+ VVKTT L+D+ DF NE+YA F S
Sbjct: 38 TGQVIGTTIEEQTQQVLKNISAILTEAGTDFDHVVKTTCFLSDIDDFVPFNEVYATAFKS 97
Query: 189 PAPARATYQVAALPLDARVEIECIAAL 215
PAR+ +VA LP D ++EIE IA L
Sbjct: 98 DFPARSAVEVARLPKDVKIEIEVIAEL 124
>pdb|2DYY|A Chain A, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|B Chain B, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|C Chain C, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|D Chain D, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|E Chain E, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|F Chain F, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|G Chain G, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|H Chain H, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|I Chain I, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|J Chain J, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|K Chain K, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|L Chain L, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
Length = 126
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 83/151 (54%), Gaps = 28/151 (18%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYV 122
+KE + T AP +GPYSQAIKA N +F++G + + P
Sbjct: 1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDP----------------------- 37
Query: 123 FESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIY 182
+TG+ V I+DQT QVL+NI IL+A+G + V+K T+ L D+ DF +NE+Y
Sbjct: 38 -----KTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVY 92
Query: 183 AKYFPSPAPARATYQVAALPLDARVEIECIA 213
A+YF PAR +V+ LP D +EIE IA
Sbjct: 93 AEYFGESKPARVAVEVSRLPKDVLIEIEAIA 123
>pdb|1QD9|A Chain A, Bacillus Subtilis Yabj
pdb|1QD9|B Chain B, Bacillus Subtilis Yabj
pdb|1QD9|C Chain C, Bacillus Subtilis Yabj
Length = 124
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 83/149 (55%), Gaps = 29/149 (19%)
Query: 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFE 124
+AV T APAA+GPYSQ I NN+ + SG + L P
Sbjct: 2 KAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTP------------------------- 36
Query: 125 SPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAK 184
+G+ V+ I++QT QV N+ +L+ +GA + +VVK T+ +AD++ F VNE+Y +
Sbjct: 37 ----SGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQ 92
Query: 185 YFPSPAPARATYQVAALPLDARVEIECIA 213
YF + PAR+ +VA LP DA VEIE IA
Sbjct: 93 YFDTHKPARSCVEVARLPKDALVEIEVIA 121
>pdb|1XRG|A Chain A, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
pdb|1XRG|B Chain B, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
pdb|1XRG|C Chain C, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
Length = 156
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 82/149 (55%), Gaps = 28/149 (18%)
Query: 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFE 124
E V TNKAP A+GPYSQAI + V+ SG + + P
Sbjct: 34 EVVKTNKAPEAIGPYSQAIVTGSFVYTSGQIPINP------------------------- 68
Query: 125 SPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAK 184
QTG+ V IE+Q +QVL+N+ +L+A+G+ + VVKTT+ + D F VNE+YAK
Sbjct: 69 ---QTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKVVKTTVFIKDXDSFAKVNEVYAK 125
Query: 185 YFPSPAPARATYQVAALPLDARVEIECIA 213
YF P PAR+ +V+ LP +EIE +A
Sbjct: 126 YFSEPYPARSCVEVSKLPKGVLIEIEAVA 154
>pdb|2B33|A Chain A, Crystal Structure Of A Putative Endoribonuclease (tm0215)
From Thermotoga Maritima Msb8 At 2.30 A Resolution
pdb|2B33|B Chain B, Crystal Structure Of A Putative Endoribonuclease (tm0215)
From Thermotoga Maritima Msb8 At 2.30 A Resolution
Length = 140
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 82/151 (54%), Gaps = 28/151 (18%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYV 122
+K V T+KAP A+GPYSQA+ N++FVSG + + PE
Sbjct: 13 MKRFVETDKAPKAIGPYSQAVVVGNMMFVSGQIPIDPE---------------------- 50
Query: 123 FESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIY 182
TG+ V TIE++TE+VL+N+ IL+A G VVK T+ + F+ VNE+Y
Sbjct: 51 ------TGELVQGTIEEKTERVLENLKAILEAGGFSLKDVVKVTVFTTSMDYFQRVNEVY 104
Query: 183 AKYFPSPAPARATYQVAALPLDARVEIECIA 213
++YF PAR+ VA LP + +EIE IA
Sbjct: 105 SRYFGDHRPARSFVAVAQLPRNVEIEIEAIA 135
>pdb|3K0T|A Chain A, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K0T|B Chain B, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K0T|C Chain C, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
Length = 143
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 75/149 (50%), Gaps = 29/149 (19%)
Query: 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVF 123
K + ++KAPAA+GPYSQAIKA N V+ SG + L P
Sbjct: 20 KTVITSDKAPAAIGPYSQAIKAGNTVYXSGQIPLDP------------------------ 55
Query: 124 ESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYA 183
T + V + IE Q QV +N+ + +A+G + +VK I L DL F VNEI
Sbjct: 56 ----STXELV-EGIEAQITQVFENLKSVAQAAGGSFKDIVKLNIFLTDLGHFAKVNEIXG 110
Query: 184 KYFPSPAPARATYQVAALPLDARVEIECI 212
YF P PARA VAALP A+VE + I
Sbjct: 111 SYFSQPYPARAAIGVAALPRGAQVEXDAI 139
>pdb|3M4S|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|B Chain B, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|C Chain C, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|D Chain D, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|E Chain E, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|F Chain F, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
Length = 148
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 79/144 (54%), Gaps = 28/144 (19%)
Query: 72 APAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGK 131
AP A+G YSQAI N +V+ SG +GL +TG
Sbjct: 33 APEAVGAYSQAIICNGMVYCSGQIGL----------------------------DRKTGD 64
Query: 132 FVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAP 191
F TIE+Q++QV+ N+ +L+ +G+ VVKTT LLAD+KDF N IYA+ F + P
Sbjct: 65 FAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKP 124
Query: 192 ARATYQVAALPLDARVEIECIAAL 215
ARA + AALP A VE+ECIA L
Sbjct: 125 ARACFAAAALPKGALVEVECIATL 148
>pdb|3MQW|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|B Chain B, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|C Chain C, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|D Chain D, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|E Chain E, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|F Chain F, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
Length = 148
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 79/144 (54%), Gaps = 28/144 (19%)
Query: 72 APAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGK 131
AP A+G YSQAI N +V+ SG +GL +TG
Sbjct: 33 APEAVGAYSQAIICNGMVYCSGQIGL----------------------------DRKTGD 64
Query: 132 FVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAP 191
F TIE+Q++QV+ N+ +L+ +G+ VVKTT LLAD+KDF N IYA+ F + P
Sbjct: 65 FAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKP 124
Query: 192 ARATYQVAALPLDARVEIECIAAL 215
ARA + AALP A VE+ECIA L
Sbjct: 125 ARACFAAAALPKGALVEVECIATL 148
>pdb|1X25|A Chain A, Crystal Structure Of A Member Of Yjgf Family From
Sulfolobus Tokodaii (st0811)
pdb|1X25|B Chain B, Crystal Structure Of A Member Of Yjgf Family From
Sulfolobus Tokodaii (st0811)
Length = 128
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 73/148 (49%), Gaps = 28/148 (18%)
Query: 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFE 124
E V T KAP +GPYSQAIK N ++VSG + + P
Sbjct: 5 ETVFTEKAPKPVGPYSQAIKVGNTLYVSGQIPIDP------------------------- 39
Query: 125 SPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAK 184
+T + V I+ QT QVL NI EI+KA+G S V + L D+ F N +YA+
Sbjct: 40 ---RTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDVAMAFVFLKDMNMFNDFNSVYAE 96
Query: 185 YFPSPAPARATYQVAALPLDARVEIECI 212
YF PAR T +V+ LP DA +EI I
Sbjct: 97 YFKDKPPARVTVEVSRLPKDALIEIAVI 124
>pdb|3M1X|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Rhomobohedral Form
Length = 148
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 78/144 (54%), Gaps = 28/144 (19%)
Query: 72 APAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGK 131
AP A+G YSQAI N V+ SG +GL +TG
Sbjct: 33 APEAVGAYSQAIICNGXVYCSGQIGL----------------------------DRKTGD 64
Query: 132 FVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAP 191
F TIE+Q++QV+ N+ +L+ +G+ VVKTT LLAD+KDF N IYA+ F + P
Sbjct: 65 FAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKP 124
Query: 192 ARATYQVAALPLDARVEIECIAAL 215
ARA + AALP A VE+ECIA L
Sbjct: 125 ARACFAAAALPKGALVEVECIATL 148
>pdb|3QUW|A Chain A, Crystal Structure Of Yeast Mmf1
Length = 153
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 29/151 (19%)
Query: 67 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESP 126
V T AP A YSQA+KANN V+VSG + P+
Sbjct: 32 VSTKLAPPAAASYSQAMKANNFVYVSGQIPYTPD-------------------------- 65
Query: 127 FQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF 186
K V +I ++ EQV +N+ IL S + ++VK + LAD+K+F N +YAK+F
Sbjct: 66 ---NKPVQGSISEKAEQVFQNVKNILAESNSSLDNIVKVNVFLADMKNFAEFNSVYAKHF 122
Query: 187 PSPAPARATYQVAALPLDARVEIECIAALPN 217
+ PAR+ VA+LPL+ +E+E IA N
Sbjct: 123 HTHKPARSCVGVASLPLNVDLEMEVIAVEKN 153
>pdb|2UYJ|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYJ|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYJ|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYN|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
pdb|2UYN|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
pdb|2UYP|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYP|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYP|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYK|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Serine
pdb|2UYK|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Serine
pdb|2UYK|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Serine
Length = 129
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 32/154 (20%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYV 122
+K+ + T +AP A+GPY Q + ++VF SG + + P
Sbjct: 1 MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVXP----------------------- 37
Query: 123 FESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIY 182
QTG+ +D ++DQ L+N+ I+ A+G ++K T+ + DL DF T+NE+Y
Sbjct: 38 -----QTGEIPAD-VQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVY 91
Query: 183 AKYFPSPA---PARATYQVAALPLDARVEIECIA 213
++F P R+ QVA LP D ++EIE IA
Sbjct: 92 KQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIA 125
>pdb|2UYN|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
Length = 129
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 32/154 (20%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYV 122
+K+ + T +AP A+GPY Q + ++VF SG + + P
Sbjct: 1 MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVXP----------------------- 37
Query: 123 FESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIY 182
QTG+ +D ++DQ L+N+ I+ A+G ++K T+ + DL DF T+NE+Y
Sbjct: 38 -----QTGEIPAD-VQDQARLSLENVXAIVVAAGLSVGDIIKMTVFITDLNDFATINEVY 91
Query: 183 AKYFPSPA---PARATYQVAALPLDARVEIECIA 213
++F P R+ QVA LP D ++EIE IA
Sbjct: 92 KQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIA 125
>pdb|1JD1|A Chain A, Crystal Structure Of Yeo7_yeast
pdb|1JD1|B Chain B, Crystal Structure Of Yeo7_yeast
pdb|1JD1|C Chain C, Crystal Structure Of Yeo7_yeast
pdb|1JD1|D Chain D, Crystal Structure Of Yeo7_yeast
pdb|1JD1|E Chain E, Crystal Structure Of Yeo7_yeast
pdb|1JD1|F Chain F, Crystal Structure Of Yeo7_yeast
Length = 129
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 29/132 (21%)
Query: 83 IKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTE 142
+K NNL+F+SG + + P+ K V +I D+ E
Sbjct: 24 MKVNNLIFLSGQIPVTPD-----------------------------NKLVEGSIADKAE 54
Query: 143 QVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALP 202
QV++NI +L+AS + VVK I LAD+ F N +YAKYF + PAR+ VAALP
Sbjct: 55 QVIQNIKNVLEASNSSLDRVVKVNIFLADINHFAEFNSVYAKYFNTHKPARSCVAVAALP 114
Query: 203 LDARVEIECIAA 214
L +E+E IAA
Sbjct: 115 LGVDMEMEAIAA 126
>pdb|1QU9|A Chain A, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
pdb|1QU9|B Chain B, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
pdb|1QU9|C Chain C, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
Length = 128
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 32/154 (20%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYV 122
+ + + T APAA+GPY Q + N++ SG + + P
Sbjct: 1 MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNP----------------------- 37
Query: 123 FESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIY 182
+TG+ +D + Q Q L N+ I++A+G +VKTT+ + DL DF TVN Y
Sbjct: 38 -----KTGEVPAD-VAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATY 91
Query: 183 AKYFPSPA---PARATYQVAALPLDARVEIECIA 213
+F PAR+ +VA LP D ++EIE IA
Sbjct: 92 EAFFTEHNATFPARSXVEVARLPKDVKIEIEAIA 125
>pdb|3VCZ|A Chain A, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
pdb|3VCZ|B Chain B, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
pdb|3VCZ|C Chain C, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
Length = 153
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 71/149 (47%), Gaps = 33/149 (22%)
Query: 69 TNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQ 128
T+ APAA+GPY Q + N+V SG + + P
Sbjct: 31 TDSAPAAIGPYIQGVDLGNMVLTSGQIPVNP----------------------------A 62
Query: 129 TGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPS 188
TG+ +D I Q Q L N+ +++ASG +VK T+ + DL DF TVNE+Y +F
Sbjct: 63 TGEVPAD-IAAQARQSLDNVKAVVEASGLTVGDIVKMTVFVKDLNDFGTVNEVYGNFFDE 121
Query: 189 PA----PARATYQVAALPLDARVEIECIA 213
PAR+ +VA LP D +EIE IA
Sbjct: 122 HNVAHYPARSCVEVARLPKDVGIEIEAIA 150
>pdb|3R0P|A Chain A, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|B Chain B, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|C Chain C, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|D Chain D, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|E Chain E, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|F Chain F, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
Length = 127
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 28/149 (18%)
Query: 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVF 123
K + ++ APAA+G YSQA+K NN V++SG + L P +T+ +
Sbjct: 4 KAIIHSDNAPAAIGTYSQAVKVNNTVYLSGQIPLDP------------------VTMQLV 45
Query: 124 ESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYA 183
E F Q QV KN+ + +A+G +VK + L DL +F VNE+
Sbjct: 46 EGDFAV----------QAHQVFKNLRAVCEAAGGGLRDIVKLNVYLTDLANFPIVNEVMG 95
Query: 184 KYFPSPAPARATYQVAALPLDARVEIECI 212
+YF +P PARA + LP + +E + I
Sbjct: 96 QYFQAPYPARAAIGINQLPRASLIEADGI 124
>pdb|2CWJ|A Chain A, Crystal Structure Of Ape1501, A Putative Endonuclease From
Aeropyrum Pernix
Length = 123
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 28/141 (19%)
Query: 72 APAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGK 131
AP +GPYSQA+++ +FVSG + + PE TG
Sbjct: 4 APKPVGPYSQAVESGCFMFVSGQIPINPE----------------------------TGA 35
Query: 132 FVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAP 191
++ ++ L N+ I++ +G +VK T+ + D+ F NE+Y +YF P P
Sbjct: 36 LEEGGFKESAKRALDNLKAIVEGAGYSMDDIVKVTVYITDISRFSEFNEVYREYFNRPYP 95
Query: 192 ARATYQVAALPLDARVEIECI 212
ARA VAALPL A +E+E +
Sbjct: 96 ARAVVGVAALPLGAPLEVEAV 116
>pdb|1J7H|A Chain A, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
pdb|1J7H|B Chain B, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
pdb|1J7H|C Chain C, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
Length = 130
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 33/155 (21%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYV 122
+ + + T KAPAA+GPY QA+ NLV SG + + P
Sbjct: 2 MTQIIHTEKAPAAIGPYVQAVDLGNLVLTSGQIPVNP----------------------- 38
Query: 123 FESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIY 182
TG+ +D + Q Q L+N+ I++ +G + +VKTT+ + DL DF VN Y
Sbjct: 39 -----ATGEVPADIVA-QARQSLENVKAIIEKAGLTAADIVKTTVFVKDLNDFAAVNAEY 92
Query: 183 AKYFPSPA----PARATYQVAALPLDARVEIECIA 213
++F PAR+ +VA LP D +EIE IA
Sbjct: 93 ERFFKENNHPNFPARSCVEVARLPKDVGLEIEAIA 127
>pdb|3V4D|A Chain A, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|C Chain C, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|F Chain F, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|B Chain B, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|D Chain D, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|E Chain E, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
Length = 134
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 28/152 (18%)
Query: 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVF 123
K ++ + A L P+ A+ +V+VSG L F
Sbjct: 9 KSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLA--------------------------F 42
Query: 124 ESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYA 183
+ +D + QT VL+ I ++++ +G + V +I + D K++ +NEIYA
Sbjct: 43 DQ--HNNVLFADDPKAQTRHVLETIRKVIETAGGTXADVTFNSIFITDWKNYAAINEIYA 100
Query: 184 KYFPSPAPARATYQVAALPLDARVEIECIAAL 215
++FP PAR Q + DA VEI IA +
Sbjct: 101 EFFPGDKPARFCIQCGLVKPDALVEIATIAHI 132
>pdb|3K12|A Chain A, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|B Chain B, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|C Chain C, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|D Chain D, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|E Chain E, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|F Chain F, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
Length = 122
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 134 SDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPS-PAPA 192
S I+DQT Q+L+NI +L++ G+D V+ ILLA +D+ +N+++ ++FP AP
Sbjct: 32 SGDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEGRAPT 91
Query: 193 RATYQVAALPLDARVEIECI 212
RA +A L +D R +E I
Sbjct: 92 RAC-SLAEL-IDPRWRVEXI 109
>pdb|3GTZ|A Chain A, Crystal Structure Of A Putative Translation Initiation
Inhibitor From Salmonella Typhimurium
pdb|3GTZ|B Chain B, Crystal Structure Of A Putative Translation Initiation
Inhibitor From Salmonella Typhimurium
pdb|3GTZ|C Chain C, Crystal Structure Of A Putative Translation Initiation
Inhibitor From Salmonella Typhimurium
Length = 124
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 139 DQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKY-FPSPAPARATYQ 197
+QT L I +L+ G+ S ++ TI L+D DF +N+ + + AP R T Q
Sbjct: 39 EQTANTLAQIDAVLEKQGSSKSRILDATIFLSDKADFAAMNKAWDAWVVAGHAPVRCTVQ 98
Query: 198 VAALPLDARVEIECIAAL 215
+ +VEI+ +AA+
Sbjct: 99 AGLMNPKYKVEIKIVAAV 116
>pdb|3I7T|A Chain A, Crystal Structure Of Rv2704, A Member Of Highly Conserved
YjgfYER057CUK114 FAMILY, FROM MYCOBACTERIUM TUBERCULOSIS
Length = 149
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 134 SDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPAR 193
D I QT L+ I L +GA + VV+T I + D+ ++ V E++A+ F P
Sbjct: 38 GDDIAAQTRDALRRIEIALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVT 97
Query: 194 ATYQVAAL 201
+ +V AL
Sbjct: 98 SMVEVTAL 105
>pdb|3KJJ|A Chain A, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|B Chain B, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|C Chain C, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|D Chain D, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|E Chain E, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|F Chain F, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|G Chain G, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|H Chain H, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|I Chain I, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|J Chain J, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|K Chain K, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|L Chain L, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJK|A Chain A, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|B Chain B, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|C Chain C, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|D Chain D, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|E Chain E, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|F Chain F, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|G Chain G, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|H Chain H, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|I Chain I, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|J Chain J, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|K Chain K, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|L Chain L, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
Length = 128
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 55/141 (39%), Gaps = 36/141 (25%)
Query: 79 YSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIE 138
YS+A+ AN L+F+SG VPE +T
Sbjct: 20 YSEAVGANGLIFLSGX---VPEN--------------------------------GETAA 44
Query: 139 DQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSP-APARATYQ 197
+QT VL I L G+D + V+ I L D D+ N ++ + + PARA +
Sbjct: 45 EQTADVLAQIDRWLAECGSDKAHVLDAVIYLRDXGDYAEXNGVWDAWVAAGRTPARACVE 104
Query: 198 VAALPLDARVEIECIAALPNA 218
+ RVEI+ A +A
Sbjct: 105 ARLARPEWRVEIKITAVKRDA 125
>pdb|3LYB|A Chain A, Structure Of Putative Endoribonuclease(Kp1_3112) From
Klebsiella Pneumoniae
pdb|3LYB|B Chain B, Structure Of Putative Endoribonuclease(Kp1_3112) From
Klebsiella Pneumoniae
pdb|3LYB|C Chain C, Structure Of Putative Endoribonuclease(Kp1_3112) From
Klebsiella Pneumoniae
pdb|3LYB|D Chain D, Structure Of Putative Endoribonuclease(Kp1_3112) From
Klebsiella Pneumoniae
Length = 165
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 17/153 (11%)
Query: 72 APAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIY--VFESPFQT 129
A A L Y+ +A + +F+SG++ + P GTI + V E T
Sbjct: 7 AGAPLARYAAWRRAGDFIFLSGIIPVNP---------LTGTIVNGFQDVPEPVRELLGAT 57
Query: 130 GKFVSDTIED----QTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKY 185
G+F +D + Q+ VL++I + ++G S V+K +L F + + +
Sbjct: 58 GEFSTDAKQGPILAQSWYVLESIRRTVASAGGQXSDVIKLVQYFRNLDHFPYYSRVRKLF 117
Query: 186 FPSPAPARATYQVAALPLDARV--EIECIAALP 216
+P P QV+ DA V E+E LP
Sbjct: 118 YPDQPPVSTVVQVSEXLPDATVLIEVEATVWLP 150
>pdb|2NRL|A Chain A, Blackfin Tuna Myoglobin
pdb|2NX0|A Chain A, Ferrous Nitrosyl Blackfin Tuna Myoglobin
Length = 147
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 144 VLKNIGEILKASGADYSSVVK------TTILLADLKDFKTVNEIYAKYFPSPAPARATYQ 197
VLK +GE+LKA G+ +++++K T + +FK ++E+ K A A Q
Sbjct: 64 VLKKLGELLKAKGS-HAAILKPLANSHATKHKIPINNFKLISEVLVKVMQEKAGLDAGGQ 122
Query: 198 VA 199
A
Sbjct: 123 TA 124
>pdb|3QM5|A Chain A, Blackfin Tuna Oxy-Myoglobin, Atomic Resolution
pdb|3QM6|A Chain A, Blackfin Tuna Deoxy-Myoglobin, Atomic Resolution
pdb|3QM7|A Chain A, Blackfin Tuna Carbonmonoxy-Myoglobin, Atomic Resolution
pdb|3QM8|A Chain A, Blackfin Tuna Cyanomet-Myoglobin, Atomic Resolution
pdb|3QM9|A Chain A, Blackfin Tuna Azido-Myoglobin, Atomic Resolution
pdb|3QMA|A Chain A, Blackfin Tuna Myoglobin Imidazole Complex, Atomic
Resolution
Length = 146
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 144 VLKNIGEILKASGADYSSVVK------TTILLADLKDFKTVNEIYAKYFPSPAPARATYQ 197
VLK +GE+LKA G+ +++++K T + +FK ++E+ K A A Q
Sbjct: 64 VLKKLGELLKAKGS-HAAILKPLANSHATKHKIPINNFKLISEVLVKVMQEKAGLDAGGQ 122
Query: 198 VA 199
A
Sbjct: 123 TA 124
>pdb|1MYT|A Chain A, Crystal Structure To 1.74 Angstroms Resolution Of
Metmyoglobin From Yellowfin Tuna (Thunnus Albacares): An
Example Of A Myoglobin Lacking The D Helix
Length = 146
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 144 VLKNIGEILKASGADYSSVVK------TTILLADLKDFKTVNEIYAKYFPSPAPARATYQ 197
VLK +GE+LKA G+ +++++K T + +FK ++E+ K A A Q
Sbjct: 63 VLKKLGELLKAKGS-HAAILKPLANSHATKHKIPINNFKLISEVLVKVMHEKAGLDAGGQ 121
Query: 198 VA 199
A
Sbjct: 122 TA 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,809,377
Number of Sequences: 62578
Number of extensions: 210743
Number of successful extensions: 592
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 529
Number of HSP's gapped (non-prelim): 58
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)