Query 027808
Match_columns 218
No_of_seqs 165 out of 1223
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 15:30:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00004 endoribonuclease L-P 100.0 5.2E-34 1.1E-38 224.8 15.4 123 65-215 2-124 (124)
2 COG0251 TdcF Putative translat 100.0 5E-34 1.1E-38 229.4 15.2 124 65-217 5-130 (130)
3 TIGR03610 RutC pyrimidine util 100.0 9E-34 2E-38 226.6 15.0 122 65-215 4-126 (127)
4 PRK11401 putative endoribonucl 100.0 7.5E-34 1.6E-38 226.8 14.5 124 64-216 2-128 (129)
5 PF01042 Ribonuc_L-PSP: Endori 100.0 1E-32 2.3E-37 216.8 15.6 118 70-215 2-121 (121)
6 cd06154 YjgF_YER057c_UK114_lik 100.0 1.5E-32 3.2E-37 216.1 13.6 117 68-213 2-119 (119)
7 cd06152 YjgF_YER057c_UK114_lik 100.0 1.3E-31 2.7E-36 210.8 13.8 109 77-214 1-114 (114)
8 cd02198 YjgH_like YjgH belongs 100.0 5.7E-31 1.2E-35 204.6 12.5 108 78-215 2-111 (111)
9 cd02199 YjgF_YER057c_UK114_lik 100.0 1.8E-30 3.8E-35 211.3 14.6 127 67-213 4-141 (142)
10 cd06150 YjgF_YER057c_UK114_lik 100.0 6.5E-30 1.4E-34 196.9 12.8 103 78-214 2-105 (105)
11 cd06156 eu_AANH_C_2 A group of 100.0 3.3E-29 7.2E-34 198.1 13.7 105 79-213 1-118 (118)
12 cd00448 YjgF_YER057c_UK114_fam 100.0 3.2E-28 7E-33 183.8 12.7 106 79-213 1-107 (107)
13 cd06153 YjgF_YER057c_UK114_lik 100.0 2.9E-28 6.4E-33 191.8 12.4 105 79-213 1-114 (114)
14 cd06155 eu_AANH_C_1 A group of 99.9 7.4E-27 1.6E-31 179.2 12.1 97 83-214 4-101 (101)
15 cd06151 YjgF_YER057c_UK114_lik 99.9 1.1E-26 2.4E-31 184.6 12.9 111 79-213 1-126 (126)
16 KOG2317 Putative translation i 99.9 5.4E-27 1.2E-31 191.1 10.6 127 62-216 5-131 (138)
17 PF14588 YjgF_endoribonc: YjgF 99.8 2.3E-18 5E-23 142.1 10.6 128 67-215 9-148 (148)
18 TIGR01884 cas_HTH CRISPR locus 37.1 92 0.002 26.3 5.6 50 135-187 34-84 (203)
19 PF04468 PSP1: PSP1 C-terminal 29.8 2.4E+02 0.0051 21.0 6.2 53 135-187 18-80 (88)
20 PF02662 FlpD: Methyl-viologen 29.0 2.5E+02 0.0055 22.2 6.6 41 137-177 71-111 (124)
21 cd04918 ACT_AK1-AT_2 ACT domai 21.5 2E+02 0.0043 19.6 4.1 45 143-187 15-65 (65)
No 1
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=100.00 E-value=5.2e-34 Score=224.79 Aligned_cols=123 Identities=54% Similarity=0.825 Sum_probs=116.1
Q ss_pred cccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHH
Q 027808 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQV 144 (218)
Q Consensus 65 ~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~v 144 (218)
+.+.+++.|++.++|||++++|+++|+|||+++|++ +|++.++|+++|++++
T Consensus 2 ~~~~~~~~~~~~~~ys~av~~g~~v~vSGq~~~~~~----------------------------~g~~~~~d~~~Q~~~~ 53 (124)
T TIGR00004 2 KIISTDKAPAAIGPYSQAVKVGNTLFVSGQIPLDPS----------------------------TGELVGGDIAEQAEQV 53 (124)
T ss_pred ceecCCCCCCCCCCCcceEEECCEEEEeeeCCCcCC----------------------------CCcCCCCCHHHHHHHH
Confidence 457788999999999999999999999999999997 4666568999999999
Q ss_pred HHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEe
Q 027808 145 LKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 215 (218)
Q Consensus 145 l~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~ 215 (218)
|+||+++|+++|++++||+++++|++|++||+.++++|.+||++++|+|++++|..|++|++||||++|++
T Consensus 54 ~~ni~~~L~~aG~~~~dvv~~~vyv~~~~~~~~~~~~~~~~f~~~~Pa~t~v~v~~L~~~~~vEIe~vA~~ 124 (124)
T TIGR00004 54 LENLKAILEAAGLSLDDVVKTTVFLTDLNDFAEVNEVYGQYFDEPYPARSAVQVAALPKGVLVEIEAIAVK 124 (124)
T ss_pred HHHHHHHHHHcCCCHHHEEEEEEEEeChHHHHHHHHHHHHHcCCCCCceEEEECccCCCCCEEEEEEEEEC
Confidence 99999999999999999999999999999999999999999999899999999999999999999999974
No 2
>COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-34 Score=229.42 Aligned_cols=124 Identities=50% Similarity=0.776 Sum_probs=115.3
Q ss_pred cccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCcccc-ccHHHHHHH
Q 027808 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVS-DTIEDQTEQ 143 (218)
Q Consensus 65 ~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~-~di~~Qt~~ 143 (218)
..+.+...|++.++|||++++||++|+|||+|.+++ |+.+. +|+++|+++
T Consensus 5 ~~~~~~~~~~~~~~yS~av~~~~~vfvSGQi~~~~~-----------------------------g~~v~~~d~~~Q~~~ 55 (130)
T COG0251 5 LIIATPNAPAPIGPYSQAVVAGGLVFVSGQIPLDPT-----------------------------GELVGGEDIEAQTRQ 55 (130)
T ss_pred ccccCCCCCCCCCCccceEEECCEEEEeCcCCcCCC-----------------------------CcccCCCCHHHHHHH
Confidence 345678899999999999999999999999999985 55554 599999999
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCC-CCCceEEEEcCCCCCCceEEEEEEEEecC
Q 027808 144 VLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPS-PAPARATYQVAALPLDARVEIECIAALPN 217 (218)
Q Consensus 144 vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~-~~PArt~V~V~~Lp~~~lVEIEaiA~~p~ 217 (218)
+|+||+++|+++|++++||+|+++|++|++||..+|++|.+||+. ++|+||+|+|+.||++++||||++|++++
T Consensus 56 ~l~ni~a~L~~aG~~~~~Vvk~~v~l~d~~~f~~~n~v~~~~f~~~~~PArs~V~v~~l~~~~~VEIeaiA~~~~ 130 (130)
T COG0251 56 ALANIKAVLEAAGSTLDDVVKVTVFLTDMNDFAAMNEVYDEFFEVGGYPARSAVGVALLPPDALVEIEAIAALPE 130 (130)
T ss_pred HHHHHHHHHHHcCCCHHHEEEEEEEecCchHHHHHHHHHHHHhccCCCCceeEEEhhhCCCCCeEEEEEEEEecC
Confidence 999999999999999999999999999999999999999999996 49999999999999999999999999874
No 3
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=100.00 E-value=9e-34 Score=226.61 Aligned_cols=122 Identities=29% Similarity=0.519 Sum_probs=113.9
Q ss_pred cccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCcc-ccccHHHHHHH
Q 027808 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKF-VSDTIEDQTEQ 143 (218)
Q Consensus 65 ~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~-~~~di~~Qt~~ 143 (218)
+.+++...+++.++|||++++|+++|+|||++.|++ |+. .++|+++|+++
T Consensus 4 ~~i~~~~~~~~~~~ys~av~~g~~v~vSGq~~~d~~-----------------------------g~~~~~~d~~~Q~~~ 54 (127)
T TIGR03610 4 KVIIPAGTSKPLAPFVPGTLADGVVYVSGTLPFDKD-----------------------------NNVVHVGDAAAQTRH 54 (127)
T ss_pred eEeCCCCCCCCCCCCCCeEEECCEEEEeccCCcCCC-----------------------------CCeeCCCCHHHHHHH
Confidence 467888899999999999999999999999999997 333 36899999999
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEe
Q 027808 144 VLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 215 (218)
Q Consensus 144 vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~ 215 (218)
+|+||+++|+++|++++||+++++|++|++||+.+|++|.+||++++|+||+++|..|+++++||||++|++
T Consensus 55 ~l~ni~~iL~~aG~~~~dvv~~~iyl~d~~~~~~~~~~~~~~f~~~~Pa~t~v~v~l~~p~~lVEIe~vA~~ 126 (127)
T TIGR03610 55 VLETIKSVIETAGGTMDDVTFNHIFIRDWADYAAINEVYAEYFPGEKPARYCIQCGLVKPDALVEIASVAHI 126 (127)
T ss_pred HHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCCCCCcEEEEEeccCCCCCEEEEEEEEEe
Confidence 999999999999999999999999999999999999999999998899999999977778999999999986
No 4
>PRK11401 putative endoribonuclease L-PSP; Provisional
Probab=100.00 E-value=7.5e-34 Score=226.80 Aligned_cols=124 Identities=38% Similarity=0.707 Sum_probs=115.0
Q ss_pred ccccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHH
Q 027808 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQ 143 (218)
Q Consensus 64 ~~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~ 143 (218)
++.+++...|++.++|||++++|+++|+|||+|+|++ +|++ .+|+++|+++
T Consensus 2 ~~~~~~~~~~~~~~~ys~av~~g~~v~vSGq~~~d~~----------------------------~~~~-~~d~~~Q~~~ 52 (129)
T PRK11401 2 KKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQ----------------------------TGEI-PADVQDQARL 52 (129)
T ss_pred CceecCCCCCCCCCCccceEEECCEEEEcCcCCccCC----------------------------CCcc-CcCHHHHHHH
Confidence 4456788889999999999999999999999999987 4553 5799999999
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCC---CCceEEEEcCCCCCCceEEEEEEEEec
Q 027808 144 VLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSP---APARATYQVAALPLDARVEIECIAALP 216 (218)
Q Consensus 144 vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~---~PArt~V~V~~Lp~~~lVEIEaiA~~p 216 (218)
+|+||+++|+++|++++||+|+++|++|++||+.+|++|.+||+++ +|+||+++|+.|+++++||||++|++.
T Consensus 53 ~~~ni~~~L~aaG~~~~~Vvk~~vyl~d~~~~~~~~~v~~~~f~~~~~~~Part~v~v~~L~~~~~VEIe~~A~~~ 128 (129)
T PRK11401 53 SLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRS 128 (129)
T ss_pred HHHHHHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHHHHhCCCCCCCCceEEEEcccCCCCCeEEEEEEEEec
Confidence 9999999999999999999999999999999999999999999964 899999999999999999999999874
No 5
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=100.00 E-value=1e-32 Score=216.82 Aligned_cols=118 Identities=50% Similarity=0.805 Sum_probs=107.7
Q ss_pred CCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHHHHHH
Q 027808 70 NKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVLKNIG 149 (218)
Q Consensus 70 ~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl~nI~ 149 (218)
..+|+|.++|||++++|+++|+|||+|.|++ +|++.++|+++|++++|+||+
T Consensus 2 ~~a~~p~~~Ys~av~~g~~v~isGq~~~d~~----------------------------~~~~~~~~~~~Q~~~~l~ni~ 53 (121)
T PF01042_consen 2 ISAPEPIGPYSQAVRAGDTVFISGQVGIDPA----------------------------TGQVVPGDIEEQTRQALDNIE 53 (121)
T ss_dssp TTSCCCSSSSBSEEEETTEEEEEEEESBCTT----------------------------TSSBSSSSHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCCCEEEECCEEEEeeeCCcCCC----------------------------CCcCCCCCHHHHHHHHHHhhh
Confidence 3578999999999999999999999999986 577668999999999999999
Q ss_pred HHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCC--CCceEEEEcCCCCCCceEEEEEEEEe
Q 027808 150 EILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSP--APARATYQVAALPLDARVEIECIAAL 215 (218)
Q Consensus 150 ~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~--~PArt~V~V~~Lp~~~lVEIEaiA~~ 215 (218)
++|+++|++++||+|+++|++|+++|+.++++|++||++. +|+|++++|..|+++++||||++|++
T Consensus 54 ~~L~~~G~~~~dvv~~~~yl~d~~~~~~~~~v~~~~f~~~~~~Pa~t~v~v~~L~~~~~vEIe~~A~v 121 (121)
T PF01042_consen 54 RILAAAGASLDDVVKVTVYLTDMSDFPAVNEVWKEFFPDHPHRPARTTVGVSALPPGALVEIEAIAVV 121 (121)
T ss_dssp HHHHHTTS-GGGEEEEEEEESSGGGHHHHHHHHHHHSTSSTS--EEEEEEESBSGGG-SEEEEEEEE-
T ss_pred hhhhcCCCcceeEeeeeehhhhhhhhHHHHHHHHHHhcccCCCCcEEEEEeCcCCCCCcEEEEEEEEC
Confidence 9999999999999999999999999999999999999965 59999999999999999999999985
No 6
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=100.00 E-value=1.5e-32 Score=216.12 Aligned_cols=117 Identities=31% Similarity=0.415 Sum_probs=110.1
Q ss_pred ccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHHHH
Q 027808 68 VTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVLKN 147 (218)
Q Consensus 68 ~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl~n 147 (218)
.++..+++.++|||++++|+++|+|||+|.|++ |+..++|+++|++++|+|
T Consensus 2 ~~~~~~~~~~~ys~av~~g~~l~vSGq~~~d~~-----------------------------~~~~~~d~~~Q~~~~~~n 52 (119)
T cd06154 2 SSGSPWEEQAGYSRAVRVGNWVFVSGTTGYDYD-----------------------------GMVMPGDAYEQTRQCLEI 52 (119)
T ss_pred CCCCCcccccCcccEEEECCEEEEeCcCcCCCC-----------------------------CCCCCCCHHHHHHHHHHH
Confidence 456788899999999999999999999999997 334578999999999999
Q ss_pred HHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCC-CCCceEEEEEEE
Q 027808 148 IGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAAL-PLDARVEIECIA 213 (218)
Q Consensus 148 I~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~L-p~~~lVEIEaiA 213 (218)
|+++|+++|++++||+|+++|++|++||+.++++|++||++++|+||+++|..| +++++||||++|
T Consensus 53 i~~~L~~aG~~~~dVvk~~vyl~d~~~~~~~~~~~~~~f~~~~Part~v~v~~L~~~~~lVEIe~~A 119 (119)
T cd06154 53 IEAALAEAGASLEDVVRTRMYVTDIADFEAVGRAHGEVFGDIRPAATMVVVSLLVDPEMLVEIEVTA 119 (119)
T ss_pred HHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcCCCCCceEEEEecccCCCCcEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999 789999999986
No 7
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.97 E-value=1.3e-31 Score=210.82 Aligned_cols=109 Identities=32% Similarity=0.480 Sum_probs=102.6
Q ss_pred CCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHHHHHHHHHHHcC
Q 027808 77 GPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVLKNIGEILKASG 156 (218)
Q Consensus 77 gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl~nI~~iL~~aG 156 (218)
.+|||++++|+++|+|||+|.|++ ++. .++|+++|++++|+||+++|+++|
T Consensus 1 ~~ys~av~~g~~v~~SGq~g~d~~----------------------------g~~-~~~d~~~Q~~~~~~Nl~~~L~~aG 51 (114)
T cd06152 1 LHYSQAVRIGDRIEISGQGGWDPD----------------------------TGK-IPEDLEEEIDQAFDNVELALKAAG 51 (114)
T ss_pred CCCCCeEEECCEEEEeccCCcCCC----------------------------CCc-cCcCHHHHHHHHHHHHHHHHHHhC
Confidence 379999999999999999999998 345 478999999999999999999999
Q ss_pred -CCccceEEEEEEecCC---CCHHHHHHHHHHhCCCCCCceEEEEcCCCC-CCceEEEEEEEE
Q 027808 157 -ADYSSVVKTTILLADL---KDFKTVNEIYAKYFPSPAPARATYQVAALP-LDARVEIECIAA 214 (218)
Q Consensus 157 -~~l~dVvkvtvyl~d~---~df~~vnev~~e~F~~~~PArt~V~V~~Lp-~~~lVEIEaiA~ 214 (218)
++++||+|+++|++|+ ++|+.+|++|++||++++|+||+++|+.|+ ++++||||++|+
T Consensus 52 ~~~~~dVvk~tvyltd~~~~~~~~~~~~~~~~~f~~~~Pa~t~v~V~~L~~p~~lVEIe~~A~ 114 (114)
T cd06152 52 GKGWEQVYKVNSYHVDIKNEEAFGLMVENFKKWMPNHQPIWTCVGVTALGLPGMRVEIEVDAI 114 (114)
T ss_pred CCCHHHEEEEEEEEecCCcHHHHHHHHHHHHHHcCCCCCCeEEEEeccCCCCCcEEEEEEEEC
Confidence 9999999999999999 789999999999999999999999999997 589999999985
No 8
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.97 E-value=5.7e-31 Score=204.63 Aligned_cols=108 Identities=31% Similarity=0.517 Sum_probs=101.5
Q ss_pred CCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHHHHHHHHHHHcCC
Q 027808 78 PYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGA 157 (218)
Q Consensus 78 pYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl~nI~~iL~~aG~ 157 (218)
+|||++++||++|+|||+|.|++ |+ .++|+++|++++|+||+++|+++|+
T Consensus 2 ~ys~av~~g~~l~vSGq~~~d~~-----------------------------g~-~~~d~~~Q~~~~~~ni~~~L~~aG~ 51 (111)
T cd02198 2 GYSPAVRVGDTLFVSGQVGSDAD-----------------------------GS-VAEDFEAQFRLAFQNLGAVLEAAGC 51 (111)
T ss_pred CCcceEEECCEEEEecccCcCCC-----------------------------CC-cCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 69999999999999999999987 44 3689999999999999999999999
Q ss_pred CccceEEEEEEecCC-CCHHHHHHHHHHhCCCCCCceEEEEcCCCC-CCceEEEEEEEEe
Q 027808 158 DYSSVVKTTILLADL-KDFKTVNEIYAKYFPSPAPARATYQVAALP-LDARVEIECIAAL 215 (218)
Q Consensus 158 ~l~dVvkvtvyl~d~-~df~~vnev~~e~F~~~~PArt~V~V~~Lp-~~~lVEIEaiA~~ 215 (218)
+++||+|+++|++|. ++|+.+|++|++||++++|+||+++|..|+ ++++||||++|++
T Consensus 52 ~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~~~~Pa~t~v~V~~L~~~~~~vEIe~~A~~ 111 (111)
T cd02198 52 SFDDVVELTTFHVDMAAHLPAFAAVKDEYFKEPYPAWTAVGVAWLARPGLLVEIKVVAVR 111 (111)
T ss_pred CHHHEEEEEEEEeccHHHHHHHHHHHHHHcCCCCCceehhhhhhcCCCCcEEEEEEEEEC
Confidence 999999999999964 899999999999999989999999999998 5999999999974
No 9
>cd02199 YjgF_YER057c_UK114_like_1 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.97 E-value=1.8e-30 Score=211.32 Aligned_cols=127 Identities=29% Similarity=0.415 Sum_probs=108.7
Q ss_pred cccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHHH
Q 027808 67 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVLK 146 (218)
Q Consensus 67 i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl~ 146 (218)
+.+++.+++.++|||++++|+++|+|||+|+|++.. ...|++ .+.+..+|+++|++++|+
T Consensus 4 ~~~~~~~~~~~~ys~av~~g~~l~vSGq~~~d~~~~-----~~~g~i---------------~~~~~~~d~~~Qt~~~~~ 63 (142)
T cd02199 4 LELPPAPAPVGNYVPAVRTGNLLYVSGQLPRVDGKL-----VYTGKV---------------GADLSVEEGQEAARLCAL 63 (142)
T ss_pred ccCCCCCCCCCccceEEEECCEEEEeCcCCCCCCCc-----cccCcc---------------ccccChHHHHHHHHHHHH
Confidence 567888999999999999999999999999998610 001111 111224689999999999
Q ss_pred HHHHHHHHcCCCcc---ceEEEEEEecCCCCHHHH-------HHHHHHhCCC-CCCceEEEEcCCCCCCceEEEEEEE
Q 027808 147 NIGEILKASGADYS---SVVKTTILLADLKDFKTV-------NEIYAKYFPS-PAPARATYQVAALPLDARVEIECIA 213 (218)
Q Consensus 147 nI~~iL~~aG~~l~---dVvkvtvyl~d~~df~~v-------nev~~e~F~~-~~PArt~V~V~~Lp~~~lVEIEaiA 213 (218)
||+++|+++|++++ ||+|+++|++|++||+.+ +++|.+||++ ++|+||+++|+.|+++++||||++|
T Consensus 64 Ni~~vL~~aG~~~~~~~dVvk~~vyl~d~~~~~~~~~~~~~~~~v~~~~f~~~~~Part~v~V~~L~~~~~VEIe~~A 141 (142)
T cd02199 64 NALAALKAALGDLDRVKRVVRLTGFVNSAPDFTEQPKVANGASDLLVEVFGEAGRHARSAVGVASLPLNAAVEVEAIV 141 (142)
T ss_pred HHHHHHHHhcCChhhcCCEEEEEEEEechHHhhhchhhhHHHHHHHHHHcCCCCCCceEEEEhhhCCCCCEEEEEEEE
Confidence 99999999999988 999999999999999874 8899999995 6899999999999989999999998
No 10
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.97 E-value=6.5e-30 Score=196.92 Aligned_cols=103 Identities=35% Similarity=0.481 Sum_probs=96.4
Q ss_pred CCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHHHHHHHHHHHcCC
Q 027808 78 PYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGA 157 (218)
Q Consensus 78 pYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl~nI~~iL~~aG~ 157 (218)
+|||++++||++|+|||+|.|+. +|+++|++++|+||+++|+++|+
T Consensus 2 ~~s~av~~g~~v~iSGq~~~~~~----------------------------------~~~~~Q~~~~~~nl~~~L~~~G~ 47 (105)
T cd06150 2 RMSQAVVHNGTVYLAGQVADDTS----------------------------------ADITGQTRQVLAKIDALLAEAGS 47 (105)
T ss_pred CcCCEEEECCEEEEeCcCCcCCC----------------------------------CCHHHHHHHHHHHHHHHHHHcCC
Confidence 69999999999999999988653 47899999999999999999999
Q ss_pred CccceEEEEEEecCCCCHHHHHHHHHHhCCC-CCCceEEEEcCCCCCCceEEEEEEEE
Q 027808 158 DYSSVVKTTILLADLKDFKTVNEIYAKYFPS-PAPARATYQVAALPLDARVEIECIAA 214 (218)
Q Consensus 158 ~l~dVvkvtvyl~d~~df~~vnev~~e~F~~-~~PArt~V~V~~Lp~~~lVEIEaiA~ 214 (218)
+++||+|+++|++|++||+.+|++|.+||++ ++|+|+++++..++++++||||++|+
T Consensus 48 ~~~dvvk~~vyl~d~~~~~~~~~~~~~~f~~~~~Pa~t~v~~~l~~~~~lvEIe~~Aa 105 (105)
T cd06150 48 DKSRILSATIWLADMADFAAMNAVWDAWVPPGHAPARACVEAKLADPGYLVEIVVTAA 105 (105)
T ss_pred CHHHEEEEEEEEccHHHHHHHHHHHHHHcCCCCCCCeEEEEecccCCCCEEEEEEEEC
Confidence 9999999999999999999999999999996 79999999986666799999999984
No 11
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.96 E-value=3.3e-29 Score=198.14 Aligned_cols=105 Identities=28% Similarity=0.385 Sum_probs=99.8
Q ss_pred CccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHHHHHHHHHHHcCCC
Q 027808 79 YSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGAD 158 (218)
Q Consensus 79 YS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl~nI~~iL~~aG~~ 158 (218)
|||++++|+++|+|||+|+||+ ++++.++|+++|++++|+||+++|+++|+
T Consensus 1 yS~av~~~~~i~vSGQ~g~d~~----------------------------~~~~~~~~~~~Q~~qal~Ni~~vL~~aG~- 51 (118)
T cd06156 1 YSQAIVVPKVAYISGQIGLIPA----------------------------TMTLLEGGITLQAVLSLQHLERVAKAMNV- 51 (118)
T ss_pred CCceEEECCEEEEEeeCCccCC----------------------------CCccCCCCHHHHHHHHHHHHHHHHHHcCC-
Confidence 8999999999999999999998 45666789999999999999999999999
Q ss_pred ccceEEEEEEecCCCCHHHHHHHHHHhCCCC-------------CCceEEEEcCCCCCCceEEEEEEE
Q 027808 159 YSSVVKTTILLADLKDFKTVNEIYAKYFPSP-------------APARATYQVAALPLDARVEIECIA 213 (218)
Q Consensus 159 l~dVvkvtvyl~d~~df~~vnev~~e~F~~~-------------~PArt~V~V~~Lp~~~lVEIEaiA 213 (218)
+||+|+++|++|+++++.+|++|.+||+.+ +|+|++++|..||++++||||+++
T Consensus 52 -~dVvk~~iyl~d~~~~~~~~~v~~~~f~~~~~~~~~~~~~~~~~P~~t~v~V~~L~~~~~VEie~i~ 118 (118)
T cd06156 52 -QWVLAAVCYVTDESSVPIARSAWSKYCSELDLEDESRNESDDVNPPLVIVVVPELPRGALVEWQGIA 118 (118)
T ss_pred -CCEEEEEEEEcChHHHHHHHHHHHHHhcCccccccccccccCCCCcEEEEEcccCCCCCeEEEEEeC
Confidence 999999999999999999999999999974 899999999999999999999974
No 12
>cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.96 E-value=3.2e-28 Score=183.84 Aligned_cols=106 Identities=51% Similarity=0.809 Sum_probs=101.0
Q ss_pred CccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHHHHHHHHHHHcCCC
Q 027808 79 YSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGAD 158 (218)
Q Consensus 79 YS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl~nI~~iL~~aG~~ 158 (218)
|+|++++|+++|+|||+|.+|+ +...++|+++|++++|+||+++|+++|.+
T Consensus 1 ys~~~~~~~~~~~sGq~~~~~~-----------------------------~~~~~~~~~~Q~~~~~~ni~~~L~~~g~~ 51 (107)
T cd00448 1 YSQAVRVGNLVFVSGQIPLDPD-----------------------------GELVPGDIEAQTRQALENLEAVLEAAGGS 51 (107)
T ss_pred CCCeEEECCEEEEeccCCcCCC-----------------------------CcccCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999998 33457899999999999999999999999
Q ss_pred ccceEEEEEEecCCCCHHHHHHHHHHhCCC-CCCceEEEEcCCCCCCceEEEEEEE
Q 027808 159 YSSVVKTTILLADLKDFKTVNEIYAKYFPS-PAPARATYQVAALPLDARVEIECIA 213 (218)
Q Consensus 159 l~dVvkvtvyl~d~~df~~vnev~~e~F~~-~~PArt~V~V~~Lp~~~lVEIEaiA 213 (218)
++||+++++|++|+++++.+|++|.+||++ ++|+|++++|..||++++||||++|
T Consensus 52 ~~~iv~~~~yv~~~~~~~~~~~~~~~~~~~~~~Pa~t~v~v~~l~~~~~VEie~~a 107 (107)
T cd00448 52 LDDVVKVTVYLTDMADFAAVNEVYDEFFGEGPPPARTAVGVAALPPGALVEIEAIA 107 (107)
T ss_pred HHHEEEEEEEEecHHHHHHHHHHHHHHhCCCCCCceEEEEeccCCCCCEEEEEEEC
Confidence 999999999999999999999999999997 8999999999999999999999986
No 13
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.96 E-value=2.9e-28 Score=191.84 Aligned_cols=105 Identities=30% Similarity=0.446 Sum_probs=95.2
Q ss_pred CccEEEE----CCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHHHHHHHHHHH
Q 027808 79 YSQAIKA----NNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVLKNIGEILKA 154 (218)
Q Consensus 79 YS~av~~----g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl~nI~~iL~~ 154 (218)
|||++++ |+++|+|||+++|++ |+..++|+++|++++|+||+.+|++
T Consensus 1 ~s~a~~~~~~~g~~v~vSGq~~~d~~-----------------------------g~~~~~d~~~Q~~~~l~ni~~~L~~ 51 (114)
T cd06153 1 FSRATLLAAGGRTHLFISGTASIVGH-----------------------------GTVHPGDVEAQTRETLENIEALLEA 51 (114)
T ss_pred CCCceeeccCCCcEEEEEeECcCCCC-----------------------------CCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999988 899999999999997 4556789999999999999999999
Q ss_pred cCCC-----ccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEE
Q 027808 155 SGAD-----YSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 213 (218)
Q Consensus 155 aG~~-----l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA 213 (218)
+|++ ++||+|+++|++|+++|+.+|++|++||++++|+ +++.+..++++++||||++|
T Consensus 52 aG~~~~~~~~~dVvk~~vyl~d~~~~~~~~~v~~~~f~~~~P~-t~~~~~l~~p~~lvEIe~~A 114 (114)
T cd06153 52 AGRGGGAQFLADLLRLKVYLRDREDLPAVRAILAARLGPAVPA-VFLQADVCRPDLLVEIEAVA 114 (114)
T ss_pred cCCCCCccchhheeEEEEEEccHHHHHHHHHHHHHHcCCCCCE-EEEEeeecCCCcEEEEEEEC
Confidence 9999 9999999999999999999999999999976665 77765444679999999986
No 14
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.94 E-value=7.4e-27 Score=179.16 Aligned_cols=97 Identities=30% Similarity=0.623 Sum_probs=89.8
Q ss_pred EEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHHHHHHHHHHHcCCCccce
Q 027808 83 IKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSV 162 (218)
Q Consensus 83 v~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl~nI~~iL~~aG~~l~dV 162 (218)
.++||++|+|||++.|+. +|+++|++++|+||+++|+++|++++||
T Consensus 4 ~~~g~~v~vSG~~~~~~~----------------------------------~d~~~Q~~~v~~ni~~~L~~aG~~~~dV 49 (101)
T cd06155 4 NRTGGLLWISNVTASESD----------------------------------ETVEEQMESIFSKLREILQSNGLSLSDI 49 (101)
T ss_pred EEECCEEEEecCCCCCCC----------------------------------CCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 467999999999988653 4789999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCC-CCCCceEEEEcCCCCCCceEEEEEEEE
Q 027808 163 VKTTILLADLKDFKTVNEIYAKYFP-SPAPARATYQVAALPLDARVEIECIAA 214 (218)
Q Consensus 163 vkvtvyl~d~~df~~vnev~~e~F~-~~~PArt~V~V~~Lp~~~lVEIEaiA~ 214 (218)
+|+++|++|++||+.+|++|.+||+ .++|+|+++++ .|+++++||||++|+
T Consensus 50 v~~~iyl~d~~~~~~~n~~~~~~f~~~~~Par~~v~~-~l~~~~lvEIe~vA~ 101 (101)
T cd06155 50 LYVTLYLRDMSDFAEVNSVYGTFFDKPNPPSRVCVEC-GLPEGCDVQLSCVAA 101 (101)
T ss_pred EEEEEEECCHHHHHHHHHHHHHHcCCCCCCceEEEEe-ccCCCCEEEEEEEEC
Confidence 9999999999999999999999999 46899999997 677899999999984
No 15
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.94 E-value=1.1e-26 Score=184.58 Aligned_cols=111 Identities=34% Similarity=0.464 Sum_probs=96.6
Q ss_pred CccEEEEC---CEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCcc-ccccHHHHHHHHHHHHHHHHHH
Q 027808 79 YSQAIKAN---NLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKF-VSDTIEDQTEQVLKNIGEILKA 154 (218)
Q Consensus 79 YS~av~~g---~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~-~~~di~~Qt~~vl~nI~~iL~~ 154 (218)
|||++++. ++||+|||+|.+++ |+.+ .|+. ..+|+++|++++|+||+++|++
T Consensus 1 ~s~~~~v~~~~~~i~vSGq~~~~~d----------~~~~--------------~g~~~~~~d~~~Q~~~~l~ni~~~L~~ 56 (126)
T cd06151 1 IAQAVEVPAGAATIYLSGTVPAVVN----------ASAP--------------KGSPARYGDTETQTISVLKRIETILQS 56 (126)
T ss_pred CCceEEeCCCceEEEEeccCCCCCC----------CCCC--------------CCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 79999885 79999999998776 1110 1233 2479999999999999999999
Q ss_pred cCCCccceEEEEEEec-CCC-----CHHHHHHHHHHhCCC----CCCceEEEEcCCCCC-CceEEEEEEE
Q 027808 155 SGADYSSVVKTTILLA-DLK-----DFKTVNEIYAKYFPS----PAPARATYQVAALPL-DARVEIECIA 213 (218)
Q Consensus 155 aG~~l~dVvkvtvyl~-d~~-----df~~vnev~~e~F~~----~~PArt~V~V~~Lp~-~~lVEIEaiA 213 (218)
+|++++||+|+++|++ |++ ||+.++++|++||++ ++|+||+++|.+|+. +++||||++|
T Consensus 57 aG~~~~dVvk~~vyl~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~Pa~t~v~V~~L~~p~~~VEIe~iA 126 (126)
T cd06151 57 QGLTMGDVVKMRVFLVADPALDGKMDFAGFMKAYRQFFGTAEQPNKPARSTLQVAGLVNPGWLVEIEVVA 126 (126)
T ss_pred cCCCHHHEEEEEEEEecCccccchhhHHHHHHHHHHHhccccCCCCCceEEEEeeecCCCCcEEEEEEEC
Confidence 9999999999999998 665 899999999999997 689999999999985 8999999987
No 16
>KOG2317 consensus Putative translation initiation inhibitor UK114/IBM1 [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=5.4e-27 Score=191.07 Aligned_cols=127 Identities=58% Similarity=0.871 Sum_probs=121.2
Q ss_pred ccccccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHH
Q 027808 62 NLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQT 141 (218)
Q Consensus 62 ~~~~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt 141 (218)
.++..+.+.++|.+.|||||+++++|++|+|||+|++|. +++++++.+.+|+
T Consensus 5 ~l~v~v~S~~Ap~~igPYsQa~~~~~~~~~SGqigl~P~----------------------------s~~~~~gg~~~q~ 56 (138)
T KOG2317|consen 5 VLHVQVISYWAPANIGPYSQATKANDVVFISGQIGLDPP----------------------------SMKLVEGGIVDQT 56 (138)
T ss_pred eeEEEEeeccCCCCcCChhHheeeCCEEEEeccccccCC----------------------------CCCEeccchHHHH
Confidence 467788899999999999999999999999999999997 6888999999999
Q ss_pred HHHHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEec
Q 027808 142 EQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALP 216 (218)
Q Consensus 142 ~~vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~p 216 (218)
+++++|++++|+++|++.+.+|+.++||.|+.||..+|++|.+||..+.|+|++++|..||++..+|||+++...
T Consensus 57 ~q~l~n~~~il~~a~a~~~~~V~~~i~l~d~~~f~~vn~v~~k~~~~~~pars~~~v~alp~~~~ie~~~i~~~~ 131 (138)
T KOG2317|consen 57 EQALLNLEEILKAAGASLDLVVKVTIFLADIIDFAAVNKVYAKYFPKPNPARSCVQVAALPLNGKIEIECIAAEA 131 (138)
T ss_pred HHHHHHHHHHHHHhccCccccEEEEEEEecchhHHHHHHHHHHHcCCCCcchhhHHHhhcCCCCceEEeeehhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998653
No 17
>PF14588 YjgF_endoribonc: YjgF/chorismate_mutase-like, putative endoribonuclease; PDB: 2OTM_B 3D01_D.
Probab=99.77 E-value=2.3e-18 Score=142.07 Aligned_cols=128 Identities=30% Similarity=0.414 Sum_probs=94.1
Q ss_pred cccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccc-cccHHHHHHHHH
Q 027808 67 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFV-SDTIEDQTEQVL 145 (218)
Q Consensus 67 i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~-~~di~~Qt~~vl 145 (218)
+..|..|.|.|.|..++++||++|+|||+|.+.+ .+.|.|++ |+-. .++-.+-+++|.
T Consensus 9 l~LP~~~~p~g~Y~p~~~~G~ll~vSGq~p~~~g-----~~~~~G~v----------------G~~~s~e~g~~AAr~~~ 67 (148)
T PF14588_consen 9 LELPEPPAPVGNYVPAVRVGNLLYVSGQLPRDDG-----KLLYTGKV----------------GEDLSVEEGYEAARLCA 67 (148)
T ss_dssp ---------SSSC-SEEEETTEEEEEEE--EETT-----EE-SBS-B----------------TTTB-HHHHHHHHHHHH
T ss_pred CCCCCCCCCCceeeeEEEECCEEEEeccCcccCC-----EEeeecCC----------------CCCCCHHHHHHHHHHHH
Confidence 7788999999999999999999999999998765 34566765 3323 467888999999
Q ss_pred HHHHHHHHHcCCCccc---eEEEEEEecCCCCHH-------HHHHHHHHhCCC-CCCceEEEEcCCCCCCceEEEEEEEE
Q 027808 146 KNIGEILKASGADYSS---VVKTTILLADLKDFK-------TVNEIYAKYFPS-PAPARATYQVAALPLDARVEIECIAA 214 (218)
Q Consensus 146 ~nI~~iL~~aG~~l~d---Vvkvtvyl~d~~df~-------~vnev~~e~F~~-~~PArt~V~V~~Lp~~~lVEIEaiA~ 214 (218)
-|+.+.|+.+-+++|. ++|++.|+....+|. ..++++.+.||+ ..|+|+.+||..||.|+.||||+|+.
T Consensus 68 Ln~La~lk~~~G~LdrV~~ivkl~g~V~s~~~F~~~p~V~ngaSdll~~vfGe~G~HaRsAvGv~sLP~~a~VEie~i~e 147 (148)
T PF14588_consen 68 LNALAALKAALGDLDRVKRIVKLTGFVNSTPDFTEHPAVANGASDLLVEVFGEAGRHARSAVGVASLPLNAPVEIELIAE 147 (148)
T ss_dssp HHHHHHHHHHCTSGGGECEEEEEEEEEEB-TT---HHHHHHHHHHHHHHHHGGGG-BEEEEEEESC-GGGBSEEEEEEEE
T ss_pred HHHHHHHHHHhCCHhHEeEEEEEEEEEecCCCcccCchhhhhHHHHHHHHhCcCCCCcccccccccCCCCCeEEEEEEEE
Confidence 9999999998888884 799999999988874 457889999994 79999999999999999999999986
Q ss_pred e
Q 027808 215 L 215 (218)
Q Consensus 215 ~ 215 (218)
+
T Consensus 148 i 148 (148)
T PF14588_consen 148 I 148 (148)
T ss_dssp -
T ss_pred C
Confidence 4
No 18
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=37.13 E-value=92 Score=26.28 Aligned_cols=50 Identities=22% Similarity=0.356 Sum_probs=34.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEecCCCCHHH-HHHHHHHhCC
Q 027808 135 DTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKT-VNEIYAKYFP 187 (218)
Q Consensus 135 ~di~~Qt~~vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~-vnev~~e~F~ 187 (218)
.+.+++++++.++++++++..+.. .+++.++-.|..|+.+ +.++......
T Consensus 34 ~~~~~~~~~a~~~l~~~~~~~~~~---~~~~~~~~vd~~d~~~~~~~v~~~i~~ 84 (203)
T TIGR01884 34 SPIEDGARRAVESLRAIISDLGGN---LVEGTIKEIELKDVPSILRQMSDIIKE 84 (203)
T ss_pred CCCchHHHHHHHHHHHHHHHhccC---CCcceEEEEecCCHHHHHHHHHHHHHh
Confidence 334588999999999999998743 3556777777777655 4444444443
No 19
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=29.83 E-value=2.4e+02 Score=21.02 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCcc--------ceEEEEEEecCCC--CHHHHHHHHHHhCC
Q 027808 135 DTIEDQTEQVLKNIGEILKASGADYS--------SVVKTTILLADLK--DFKTVNEIYAKYFP 187 (218)
Q Consensus 135 ~di~~Qt~~vl~nI~~iL~~aG~~l~--------dVvkvtvyl~d~~--df~~vnev~~e~F~ 187 (218)
...+.+.+.++...++.++..|..|. |=-|+++|++.-. ||..+.+.+.+.|+
T Consensus 18 ~~~~~~e~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~ 80 (88)
T PF04468_consen 18 ERLREREEEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFK 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhC
Confidence 34566778999999999999999876 4568888887554 78888777777665
No 20
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=29.01 E-value=2.5e+02 Score=22.19 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccceEEEEEEecCCCCHHH
Q 027808 137 IEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKT 177 (218)
Q Consensus 137 i~~Qt~~vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~ 177 (218)
-...++.-++.++++|++.|.+.+.|--..++..+.+.|..
T Consensus 71 Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~ 111 (124)
T PF02662_consen 71 GNYRAEKRVERLKKLLEELGIEPERVRLYWISAPEGKRFAE 111 (124)
T ss_pred hhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCcccHHHHHH
Confidence 34678888999999999999999987777776666666543
No 21
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.48 E-value=2e+02 Score=19.57 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCCccceE------EEEEEecCCCCHHHHHHHHHHhCC
Q 027808 143 QVLKNIGEILKASGADYSSVV------KTTILLADLKDFKTVNEIYAKYFP 187 (218)
Q Consensus 143 ~vl~nI~~iL~~aG~~l~dVv------kvtvyl~d~~df~~vnev~~e~F~ 187 (218)
.++.++-..|++.|-...-+. ++.+.+.+-+--..++.++++||.
T Consensus 15 ~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~~~~~av~~Lh~~f~~ 65 (65)
T cd04918 15 LILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEAEGCVQALHKSFFE 65 (65)
T ss_pred cHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHhC
Confidence 367788888999887774333 444554443334567777888763
Done!