Query 027808
Match_columns 218
No_of_seqs 165 out of 1223
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 02:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r0p_A L-PSP putative endoribo 100.0 7.3E-37 2.5E-41 241.9 16.5 124 64-215 4-127 (127)
2 3quw_A Protein MMF1; chorismat 100.0 6.2E-37 2.1E-41 251.6 16.6 130 59-217 24-153 (153)
3 2dyy_A UPF0076 protein PH0854; 100.0 6.9E-37 2.4E-41 241.8 16.0 126 63-216 1-126 (126)
4 3l7q_A Putative translation in 100.0 9.5E-37 3.2E-41 241.0 15.9 123 65-215 2-124 (125)
5 1jd1_A Hypothetical 13.9 kDa p 100.0 1.6E-36 5.4E-41 240.8 16.5 125 64-217 5-129 (129)
6 1qah_A Perchloric acid soluble 100.0 1.9E-36 6.7E-41 242.8 16.4 126 64-217 5-130 (136)
7 1x25_A Hypothetical UPF0076 pr 100.0 1.8E-36 6.2E-41 240.2 15.5 124 65-216 5-128 (128)
8 3v4d_A Aminoacrylate peracid r 100.0 2.8E-36 9.5E-41 241.1 16.7 126 64-217 9-134 (134)
9 2b33_A Protein synthesis inhib 100.0 2.4E-36 8.1E-41 244.3 16.2 128 62-217 12-139 (140)
10 3k0t_A Endoribonuclease L-PSP, 100.0 3.1E-36 1.1E-40 244.4 15.4 133 54-215 9-142 (143)
11 2cvl_A TTHA0137, protein trans 100.0 5.9E-36 2E-40 235.9 16.5 122 66-216 3-124 (124)
12 1qd9_A Purine regulatory prote 100.0 1E-35 3.5E-40 234.8 16.1 122 66-216 3-124 (124)
13 1qu9_A YJGF protein; structura 100.0 4.3E-36 1.5E-40 237.8 13.7 124 64-216 2-128 (128)
14 3m1x_A Putative endoribonuclea 100.0 1.3E-35 4.5E-40 241.9 14.8 124 64-215 25-148 (148)
15 2cwj_A Putative endonuclease; 100.0 5.6E-36 1.9E-40 235.7 11.2 120 70-217 2-121 (123)
16 1xrg_A Putative translation in 100.0 7.1E-35 2.4E-39 239.8 15.7 124 64-215 33-156 (156)
17 3vcz_A Endoribonuclease L-PSP; 100.0 2.7E-35 9.3E-40 241.4 13.2 134 49-216 16-153 (153)
18 3lme_A Possible translation in 100.0 3.5E-34 1.2E-38 230.4 14.0 124 64-216 3-129 (138)
19 3lyb_A Putative endoribonuclea 100.0 3.7E-34 1.3E-38 237.4 14.0 140 69-217 4-151 (165)
20 1pf5_A Hypothetical protein YJ 100.0 1.8E-33 6E-38 223.6 17.1 123 64-217 4-130 (131)
21 2ig8_A Hypothetical protein PA 100.0 1.4E-33 4.8E-38 227.7 14.7 116 73-217 14-136 (144)
22 3i7t_A RV2704, putative unchar 100.0 7.9E-33 2.7E-37 226.3 12.0 119 64-218 4-123 (149)
23 3i3f_A Hypothetical protein; s 100.0 4.5E-32 1.5E-36 218.6 15.3 121 64-216 15-140 (141)
24 2otm_A Hypothetical protein; s 100.0 1.7E-32 5.9E-37 224.7 10.6 137 59-215 6-154 (154)
25 3kjj_A NMB1025 protein; YJGF p 100.0 1.4E-31 4.7E-36 213.5 15.1 109 75-218 16-125 (128)
26 3d01_A Uncharacterized protein 100.0 6.1E-32 2.1E-36 223.6 9.5 133 60-216 15-164 (165)
27 2ewc_A Conserved hypothetical 100.0 4E-31 1.4E-35 209.7 13.6 111 72-217 7-122 (126)
28 3k12_A Uncharacterized protein 100.0 5.7E-31 2E-35 207.6 13.0 107 76-216 8-115 (122)
29 3gtz_A Putative translation in 100.0 4.7E-30 1.6E-34 203.1 14.5 104 77-216 12-117 (124)
30 3q71_A Poly [ADP-ribose] polym 28.7 73 0.0025 26.7 5.0 55 134-189 163-218 (221)
31 1spv_A Putative polyprotein/ph 24.7 1E+02 0.0034 24.7 4.9 51 134-188 127-177 (184)
32 2x47_A Macro domain-containing 22.3 1.6E+02 0.0055 24.6 5.9 51 134-187 183-233 (235)
33 1xhj_A Nitrogen fixation prote 21.2 1.4E+02 0.0048 21.6 4.6 54 134-187 5-71 (88)
No 1
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=100.00 E-value=7.3e-37 Score=241.93 Aligned_cols=124 Identities=38% Similarity=0.628 Sum_probs=119.1
Q ss_pred ccccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHH
Q 027808 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQ 143 (218)
Q Consensus 64 ~~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~ 143 (218)
++.|++++.|+|.|+|||++++||++|+|||+|+|++ +|++..+|+++|+++
T Consensus 4 ~~~i~~~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~----------------------------~g~~~~~d~~~Q~~~ 55 (127)
T 3r0p_A 4 KAIIHSDNAPAAIGTYSQAVKVNNTVYLSGQIPLDPV----------------------------TMQLVEGDFAVQAHQ 55 (127)
T ss_dssp CEEECCTTSCCCCSSCCSEEEETTEEEEEEECSBCTT----------------------------TSSBCSSCHHHHHHH
T ss_pred ceEeCCCCCCCCCCCCCCeEEECCEEEEeccCCcCCC----------------------------CCcCCCCCHHHHHHH
Confidence 5679999999999999999999999999999999998 677767899999999
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEe
Q 027808 144 VLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 215 (218)
Q Consensus 144 vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~ 215 (218)
+|+||+++|+++|++++||+|+++|++|++||+.+|++|.+||++++|+|++++|+.||+|++||||++|++
T Consensus 56 ~l~ni~~~L~~ag~~l~~vvk~~vyl~d~~~~~~~~~v~~~~f~~~~Part~v~V~~L~~~~~VEIe~iA~~ 127 (127)
T 3r0p_A 56 VFKNLRAVCEAAGGGLRDIVKLNVYLTDLANFPIVNEVMGQYFQAPYPARAAIGINQLPRASLIEADGIMVI 127 (127)
T ss_dssp HHHHHHHHHHHTTSCGGGEEEEEEEESCGGGHHHHHHHHHHHCCSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHhCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999975
No 2
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-37 Score=251.60 Aligned_cols=130 Identities=41% Similarity=0.615 Sum_probs=120.2
Q ss_pred hhcccccccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHH
Q 027808 59 AVSNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIE 138 (218)
Q Consensus 59 ~~~~~~~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~ 138 (218)
.+...++.|++++.|+|.++|||++++|+++|+|||+|.|++ |+++.+|++
T Consensus 24 ~~~~~~~~i~~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~-----------------------------g~~~~gdi~ 74 (153)
T 3quw_A 24 RGITTLTPVSTKLAPPAAASYSQAMKANNFVYVSGQIPYTPD-----------------------------NKPVQGSIS 74 (153)
T ss_dssp ----CEEEECCTTSCCCCTTCCSEEEETTEEEEEEECSBCTT-----------------------------SCBCCSCHH
T ss_pred ccccceEEEcCCCCCCCCCCcCCEEEECCEEEEeeeCCcCCC-----------------------------CCCcCCCHH
Confidence 334446789999999999999999999999999999999997 566688999
Q ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEecC
Q 027808 139 DQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 217 (218)
Q Consensus 139 ~Qt~~vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~p~ 217 (218)
+|++++|+||+++|+++|++++||+|+++|++|++||+.+|++|.+||++++|+|++|+|..||+|++||||++|++|+
T Consensus 75 ~Qt~~~l~Ni~a~L~~aG~~l~dVVkvtvyl~d~~df~~~n~v~~~~f~~~~PArt~V~V~~L~~~~lVEIeaiA~~pn 153 (153)
T 3quw_A 75 EKAEQVFQNVKNILAESNSSLDNIVKVNVFLADMKNFAEFNSVYAKHFHTHKPARSCVGVASLPLNVDLEMEVIAVEKN 153 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSSSCCCEEEEEECSCCGGGCSEEEEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999985
No 3
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.9e-37 Score=241.79 Aligned_cols=126 Identities=47% Similarity=0.778 Sum_probs=118.4
Q ss_pred cccccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHH
Q 027808 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTE 142 (218)
Q Consensus 63 ~~~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~ 142 (218)
|++.+++++.|++.|+|||++++|+++|+|||+|+|++ +|++..+|+++|++
T Consensus 1 m~~~i~~~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~----------------------------~g~~~~~d~~~Q~~ 52 (126)
T 2dyy_A 1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPK----------------------------TGEIVKGDIKDQTR 52 (126)
T ss_dssp CEEEECCTTSCCCCSSCBSEEEETTEEEEEEECSBCTT----------------------------TCSBCSSSHHHHHH
T ss_pred CCceecCCCCCCCCCCcccEEEECCEEEEeeeCCcCCC----------------------------CCcCCCcCHHHHHH
Confidence 34568889999999999999999999999999999998 67776789999999
Q ss_pred HHHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEec
Q 027808 143 QVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALP 216 (218)
Q Consensus 143 ~vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~p 216 (218)
++|+||+++|+++|++++||+|+++|++|++||+.+|++|.+||++++|+||+++|+.||+|++||||++|+++
T Consensus 53 ~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~~~~~~f~~~~Part~v~v~~L~~~~~VEIe~iA~~~ 126 (126)
T 2dyy_A 53 QVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126 (126)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEEEECC-CCTTHHHHHHHHHHTTTCCEEEEEECSCCGGGCSEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999874
No 4
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0
Probab=100.00 E-value=9.5e-37 Score=240.96 Aligned_cols=123 Identities=52% Similarity=0.801 Sum_probs=117.9
Q ss_pred cccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHH
Q 027808 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQV 144 (218)
Q Consensus 65 ~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~v 144 (218)
+.|++++.|+|.|+|||++++||++|+|||+|+|++ +|+++++|+++|++++
T Consensus 2 ~~i~~~~~p~p~g~ys~av~~g~~l~vSGq~~~d~~----------------------------~g~~~~~d~~~Q~~~~ 53 (125)
T 3l7q_A 2 KKIHTDKAPAAIGPYVQGKIVGNLLFASGQVPLSPE----------------------------TGQVIGTTIEEQTQQV 53 (125)
T ss_dssp CEECCTTSCCCCSSCBSEEEETTEEEEEEECSBCTT----------------------------TCSBCCSSHHHHHHHH
T ss_pred ceEcCCCCCCCCCCCCCEEEECCEEEEeccCCcCCC----------------------------CCCCCCcCHHHHHHHH
Confidence 468899999999999999999999999999999996 5777789999999999
Q ss_pred HHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEe
Q 027808 145 LKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 215 (218)
Q Consensus 145 l~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~ 215 (218)
|+||+++|+++|++++||+|+++|++|++||+.+|++|.+||++++|+||+++|+.||+|++||||++|++
T Consensus 54 l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~v~~~~f~~~~Part~v~v~~L~~~~~VEIe~iA~v 124 (125)
T 3l7q_A 54 LKNISAILTEAGTDFDHVVKTTCFLSDIDDFVPFNEVYATAFKSDFPARSAVEVARLPKDVKIEIEVIAEL 124 (125)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEEEEESCGGGHHHHHHHHHTTCCSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975
No 5
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1
Probab=100.00 E-value=1.6e-36 Score=240.84 Aligned_cols=125 Identities=45% Similarity=0.722 Sum_probs=118.4
Q ss_pred ccccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHH
Q 027808 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQ 143 (218)
Q Consensus 64 ~~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~ 143 (218)
++.|++++.|++.++|||++++||++|+|||+|+|++ |+++.+|+++|+++
T Consensus 5 ~~~i~~~~~~~~~~~ys~av~~g~~l~vSGq~~~~~~-----------------------------g~~~~g~~~~Q~~~ 55 (129)
T 1jd1_A 5 LTPVICESAPAAAASYSHAMKVNNLIFLSGQIPVTPD-----------------------------NKLVEGSIADKAEQ 55 (129)
T ss_dssp EEEECCTTSCCCSSSCCSEEEETTEEEEEEECSBCTT-----------------------------SCBCCSCHHHHHHH
T ss_pred ceEecCCCCCCCCCCcCCEEEECCEEEEeeeCCcCCC-----------------------------CCCcCCCHHHHHHH
Confidence 4568899999999999999999999999999999987 55567899999999
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEecC
Q 027808 144 VLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 217 (218)
Q Consensus 144 vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~p~ 217 (218)
+|+||+++|+++|++++||+|+++|++|++||+.+|++|.+||++++|+|++++|..||+|++||||++|++|+
T Consensus 56 ~l~ni~~~L~~aG~~~~~vvk~~vyl~d~~d~~~~n~~~~~~f~~~~Part~v~v~~L~~~~~VEIe~iA~~~~ 129 (129)
T 1jd1_A 56 VIQNIKNVLEASNSSLDRVVKVNIFLADINHFAEFNSVYAKYFNTHKPARSCVAVAALPLGVDMEMEAIAAERD 129 (129)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSSSSCCEEEEEECSBCGGGCSEEEEEEEECC-
T ss_pred HHHHHHHHHHHcCCCHHHeEEEEEEEcChHHHHHHHHHHHHHcCCCCCcEEEEEeccCCCCCEEEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999874
No 6
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Probab=100.00 E-value=1.9e-36 Score=242.75 Aligned_cols=126 Identities=52% Similarity=0.870 Sum_probs=120.3
Q ss_pred ccccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHH
Q 027808 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQ 143 (218)
Q Consensus 64 ~~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~ 143 (218)
++.|++++.|++.|+|||++++|+++|+|||+|+|++ +|++..+|+++|+++
T Consensus 5 ~~~i~~~~~p~~~g~ys~av~~g~~l~vSGq~~~d~~----------------------------~g~~~~~d~~~Q~~~ 56 (136)
T 1qah_A 5 RKVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPS----------------------------SGQLVPGGVAEEAKQ 56 (136)
T ss_dssp EEEECCTTSCCCSSSCCSEEEETTEEEEEEECCBCTT----------------------------TCSBCSSCHHHHHHH
T ss_pred eeEecCCCCCCCCCCCCCEEEECCEEEEeeECCcCCC----------------------------CCcCCCcCHHHHHHH
Confidence 4568899999999999999999999999999999998 677778999999999
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEecC
Q 027808 144 VLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 217 (218)
Q Consensus 144 vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~p~ 217 (218)
+|+||+++|+++|++++||+|+++|++|++||+.+|++|.+||++++|+|++++|..||+|++||||++|++++
T Consensus 57 ~l~ni~~~L~~aG~~l~~vvk~~vyl~d~~d~~~~n~~~~~~f~~~~Part~v~V~~L~~~~~VEIe~iA~~~~ 130 (136)
T 1qah_A 57 ALKNLGEILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGNLPARAAYQVAALPKGSRIEIEAIAVQGP 130 (136)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHTTCCSSCCEEEEEECSCCGGGCSEEEEEEEECSC
T ss_pred HHHHHHHHHHHcCCCHHHEEEEEEEEccCccHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
No 7
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1
Probab=100.00 E-value=1.8e-36 Score=240.21 Aligned_cols=124 Identities=45% Similarity=0.682 Sum_probs=117.8
Q ss_pred cccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHH
Q 027808 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQV 144 (218)
Q Consensus 65 ~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~v 144 (218)
+.|++++.|++.|+|||++++|+++|+|||+|+|++ +|++..+|+++|++++
T Consensus 5 ~~i~~~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~----------------------------~g~~~~~~~~~Q~~~~ 56 (128)
T 1x25_A 5 ETVFTEKAPKPVGPYSQAIKVGNTLYVSGQIPIDPR----------------------------TNEIVKGDIKVQTRQV 56 (128)
T ss_dssp EEECCTTSCCCCSSCCSEEEETTEEEEEEECSEETT----------------------------TTEECSSCHHHHHHHH
T ss_pred eEecCCCCCCCCCCcCCEEEECCEEEEeeeCCcCCC----------------------------CCcCCCccHHHHHHHH
Confidence 457889999999999999999999999999999997 6777779999999999
Q ss_pred HHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEec
Q 027808 145 LKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALP 216 (218)
Q Consensus 145 l~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~p 216 (218)
|+||+++|+++|++++||+|+++|++|++||+.+|++|.+||++++|+||+++|+.||+|++||||++|+++
T Consensus 57 l~ni~~~L~~ag~~l~~vvk~~vyl~d~~~~~~~n~~~~~~f~~~~Part~v~V~~L~~~~~VEIe~iA~~~ 128 (128)
T 1x25_A 57 LDNIKEIVKAAGFSLSDVAMAFVFLKDMNMFNDFNSVYAEYFKDKPPARVTVEVSRLPKDALIEIAVICSKG 128 (128)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHCCSSCCEEEEEECSCCGGGCSEEEEEEEEC-
T ss_pred HHHHHHHHHHhCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcCCCCCCEEEEEcccCCCCCEEEEEEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999874
No 8
>3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6}
Probab=100.00 E-value=2.8e-36 Score=241.07 Aligned_cols=126 Identities=31% Similarity=0.553 Sum_probs=113.2
Q ss_pred ccccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHH
Q 027808 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQ 143 (218)
Q Consensus 64 ~~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~ 143 (218)
++.|++++.|+|.++|||++++||++|+|||+|.|++ +|.+.++|+++|+++
T Consensus 9 ~~~i~~~~~p~p~g~ys~av~~g~~l~vSGq~~~d~~----------------------------~~~~~~~d~~~Q~~~ 60 (134)
T 3v4d_A 9 KSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQH----------------------------NNVLFADDPKAQTRH 60 (134)
T ss_dssp CEEECCCC------CCCSEEEETTEEEEEEECCBCTT----------------------------SCBSSTTCHHHHHHH
T ss_pred ceEECCCCCCCCCCCcCCEEEECCEEEEeccCccCCC----------------------------CCEECCccHHHHHHH
Confidence 5678999999999999999999999999999999998 455557899999999
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEecC
Q 027808 144 VLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 217 (218)
Q Consensus 144 vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~p~ 217 (218)
+|+||+++|+++|++++||+|+++|++|++||+.+|++|.+||++++|+|++|+|..||+|++||||++|++|+
T Consensus 61 ~l~nl~~~L~~aG~~l~~vvk~~vyl~d~~~f~~~n~v~~~~f~~~~Part~v~v~~l~~~~~VEIe~iA~~~~ 134 (134)
T 3v4d_A 61 VLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK 134 (134)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHCCSSCCEEEEEECBCSSTTCCEEEEEEEECC-
T ss_pred HHHHHHHHHHHcCCCHHHeEEEEEEECCHHHHHHHHHHHHHHcCCCCCcEEEEEccccCCCCEEEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999985
No 9
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Probab=100.00 E-value=2.4e-36 Score=244.33 Aligned_cols=128 Identities=45% Similarity=0.732 Sum_probs=121.9
Q ss_pred ccccccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHH
Q 027808 62 NLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQT 141 (218)
Q Consensus 62 ~~~~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt 141 (218)
.||+.+.+++.|++.|+|||++++|+++|+|||+|+|++ +|++..+|+++|+
T Consensus 12 ~~~~~~~~~~~p~~~g~ys~av~~g~~lfvSGq~~~d~~----------------------------tG~~~~~d~~~Qt 63 (140)
T 2b33_A 12 HMKRFVETDKAPKAIGPYSQAVVVGNMMFVSGQIPIDPE----------------------------TGELVQGTIEEKT 63 (140)
T ss_dssp -CCEEECCTTSCCCCSSCCSEEEETTEEEEEEECSBCTT----------------------------TCCBCCSCHHHHH
T ss_pred hhcceecCCCCCCCCCCcCCEEEECCEEEEEeeCCcCCC----------------------------CCccCCCCHHHHH
Confidence 478889999999999999999999999999999999997 5777678999999
Q ss_pred HHHHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEecC
Q 027808 142 EQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 217 (218)
Q Consensus 142 ~~vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~p~ 217 (218)
+++|+||+++|+++|++++||+|+++|++|++||+.+|++|.+||++++|+||+++|..||+|++||||++|+++.
T Consensus 64 ~~~l~ni~~~L~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~~~PArt~V~V~~L~~~~lVEIe~iA~~~~ 139 (140)
T 2b33_A 64 ERVLENLKAILEAGGFSLKDVVKVTVFTTSMDYFQRVNEVYSRYFGDHRPARSFVAVAQLPRNVEIEIEAIAVKEG 139 (140)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHHTTTCCEEEEEECSCCGGGCSEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEEEEEECCchhHHHHHHHHHHHCCCCCCcEEEEEcccCCCCCEEEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875
No 10
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV}
Probab=100.00 E-value=3.1e-36 Score=244.41 Aligned_cols=133 Identities=44% Similarity=0.688 Sum_probs=117.9
Q ss_pred ccccchhccc-ccccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCcc
Q 027808 54 CLSTSAVSNL-KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKF 132 (218)
Q Consensus 54 ~~~~~~~~~~-~~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~ 132 (218)
++++.-+.+| ++.|++++.|+|.|+|||++++||++|+|||+|+|++ +|++
T Consensus 9 ~~~~~~~~~m~~~~i~~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~----------------------------~g~~ 60 (143)
T 3k0t_A 9 SMDIEFVDLEGKTVITSDKAPAAIGPYSQAIKAGNTVYMSGQIPLDPS----------------------------TMEL 60 (143)
T ss_dssp -----------CEEECCTTSCCCCSSCCSEEEETTEEEEEEECSBCTT----------------------------TCSB
T ss_pred ccceeeeccCceeEEcCCCCCCCCCCcCcEEEECCEEEEeeeCCcCCC----------------------------CCcC
Confidence 4555556666 6779999999999999999999999999999999998 5776
Q ss_pred ccccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEE
Q 027808 133 VSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECI 212 (218)
Q Consensus 133 ~~~di~~Qt~~vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEai 212 (218)
.. |+++|++++|+||+++|+++|++++||+|+++|++|++||+.+|++|.+||++++|+||+++|..||+|++||||++
T Consensus 61 ~~-d~~~Qt~~~l~ni~aiL~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~~~PArt~v~V~~Lp~~~lVEIe~i 139 (143)
T 3k0t_A 61 VE-GIEAQITQVFENLKSVAQAAGGSFKDIVKLNIFLTDLGHFAKVNEIMGSYFSQPYPARAAIGVAALPRGAQVEMDAI 139 (143)
T ss_dssp CS-SHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHTTTCCSSCCEEEEEECSBCGGGCSEEEEEE
T ss_pred Cc-CHHHHHHHHHHHHHHHHHHhCCChHHEEEEEEEEcChHHHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEE
Confidence 54 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEe
Q 027808 213 AAL 215 (218)
Q Consensus 213 A~~ 215 (218)
|++
T Consensus 140 A~~ 142 (143)
T 3k0t_A 140 LVI 142 (143)
T ss_dssp EEC
T ss_pred EEE
Confidence 986
No 11
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A
Probab=100.00 E-value=5.9e-36 Score=235.87 Aligned_cols=122 Identities=52% Similarity=0.846 Sum_probs=116.3
Q ss_pred ccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHH
Q 027808 66 AVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVL 145 (218)
Q Consensus 66 ~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl 145 (218)
.|++++.|++.|+|||++++|+++|+|||+|+|++ |++..+|+++|++++|
T Consensus 3 ~i~~~~~p~~~g~ys~av~~g~~~~vSGq~~~~~~-----------------------------g~~~~~~~~~Q~~~~l 53 (124)
T 2cvl_A 3 AVKTDRAPAAIGPYAQAVKAGGFVFVSGQIPLAPD-----------------------------GSLVEGDIRVQTERVM 53 (124)
T ss_dssp EECCTTSCCCCSSCBSEEEETTEEEEEEECSBCTT-----------------------------SCBCCSSHHHHHHHHH
T ss_pred eecCCCCCCCCCCcCCEEEECCEEEEeeeCCcCCC-----------------------------CCCCCCCHHHHHHHHH
Confidence 47789999999999999999999999999999986 6666789999999999
Q ss_pred HHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEec
Q 027808 146 KNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALP 216 (218)
Q Consensus 146 ~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~p 216 (218)
+||+++|+++|++++||+|+++|++|++||+.+|++|.+||++++|+||+++|+.||+|++||||++|+++
T Consensus 54 ~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~~~~~~~~f~~~~Part~v~v~~L~~~~~VEIe~iA~~~ 124 (124)
T 2cvl_A 54 ENLKAVLEAAGSGLSRVVQTTCFLADMEDFPGFNEVYARYFTPPYPARATVAVKALPRGVRVEVACVALAE 124 (124)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHCCSSCCEEEEEECSCCGGGCSEEEEEEEECC
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEEcChHHHHHHHHHHHHHcCCCCCceEEEEcccCCCCCEEEEEEEEEeC
Confidence 99999999999999999999999999999999999999999988999999999999999999999999874
No 12
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=100.00 E-value=1e-35 Score=234.78 Aligned_cols=122 Identities=48% Similarity=0.792 Sum_probs=115.6
Q ss_pred ccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHH
Q 027808 66 AVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVL 145 (218)
Q Consensus 66 ~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl 145 (218)
.|++++.|++.|+|||++++||++|+|||+|+|++ |++..+|+++|++++|
T Consensus 3 ~i~~~~~p~~~g~ys~av~~g~~v~vSGq~~~~~~-----------------------------g~~~~~d~~~Q~~~~l 53 (124)
T 1qd9_A 3 AVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTPS-----------------------------GEMVNGDIKEQTHQVF 53 (124)
T ss_dssp EECCTTSCCCCSSCBSEEEETTEEEECCBCSBCTT-----------------------------SCBCCSCHHHHHHHHH
T ss_pred EecCCCCCCCCCCCCCEEEECCEEEEeeeCCcCCC-----------------------------CCCCCCCHHHHHHHHH
Confidence 47788999999999999999999999999999986 6665689999999999
Q ss_pred HHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEec
Q 027808 146 KNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALP 216 (218)
Q Consensus 146 ~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~p 216 (218)
+||+++|+++|++++||+|+++|++|++||+.+|++|.+||++++|+|++++|+.||+|++||||++|++.
T Consensus 54 ~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~~~~~~f~~~~Part~v~v~~L~~~~~VEIe~iA~~~ 124 (124)
T 1qd9_A 54 SNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVIALVK 124 (124)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSSSCCCEEEEEECSBCGGGCSEEEEEEEECC
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEEcChHHHHHHHHHHHHHcCCCCCCeEEEEcccCCCCCEEEEEEEEEeC
Confidence 99999999999999999999999999999999999999999998999999999999999999999999863
No 13
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A
Probab=100.00 E-value=4.3e-36 Score=237.82 Aligned_cols=124 Identities=39% Similarity=0.674 Sum_probs=116.7
Q ss_pred ccccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHH
Q 027808 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQ 143 (218)
Q Consensus 64 ~~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~ 143 (218)
++.|++++.|++.|+|||++++|+++|+|||+|+|++ +|++ ++|+++|+++
T Consensus 2 ~~~i~~~~~p~~~g~ys~av~~g~~l~vSGq~~~d~~----------------------------~g~~-~~d~~~Q~~~ 52 (128)
T 1qu9_A 2 SKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPK----------------------------TGEV-PADVAAQARQ 52 (128)
T ss_dssp CEEECCTTSCCCCSSCBSEEECSSEEEECCBCSCCTT----------------------------TCCC-CSSHHHHHHH
T ss_pred cccccCCCCCCCCCCccceEEECCEEEEeccCCccCC----------------------------CCCC-CcCHHHHHHH
Confidence 4568889999999999999999999999999999996 5665 6899999999
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCC---CCceEEEEcCCCCCCceEEEEEEEEec
Q 027808 144 VLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSP---APARATYQVAALPLDARVEIECIAALP 216 (218)
Q Consensus 144 vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~---~PArt~V~V~~Lp~~~lVEIEaiA~~p 216 (218)
+|+||+++|+++|++++||+|+++|++|++||+.+|++|.+||+++ +|+|++++|..||+|++||||++|+++
T Consensus 53 ~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~~~~~~f~~~~~~~Part~v~v~~L~~~~~VEIe~iA~~~ 128 (128)
T 1qu9_A 53 SLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAIAVRR 128 (128)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHHHHTTCCCCEEEEEECSBCGGGCSEEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCCCCCCCCCEEEEEhhhCCCCCEEEEEEEEEeC
Confidence 9999999999999999999999999999999999999999999965 799999999999999999999999875
No 14
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A*
Probab=100.00 E-value=1.3e-35 Score=241.94 Aligned_cols=124 Identities=49% Similarity=0.736 Sum_probs=118.3
Q ss_pred ccccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHH
Q 027808 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQ 143 (218)
Q Consensus 64 ~~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~ 143 (218)
++.|++++.|+|.|+|||++++||++|+|||+|+|++ +|++.++|+++|+++
T Consensus 25 ~~~i~~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~----------------------------~G~~~~~d~~~Q~~~ 76 (148)
T 3m1x_A 25 LTVVASPLAPEAVGAYSQAIICNGXVYCSGQIGLDRK----------------------------TGDFAGKTIEEQSKQ 76 (148)
T ss_dssp EEEECCSSSCCCCSSCCSEEEETTEEEEEEEESEETT----------------------------TTEESCSSHHHHHHH
T ss_pred cEEECCCCCCCCCCCCCcEEEECCEEEEEeeCCcCCC----------------------------CCcCCCCCHHHHHHH
Confidence 4578899999999999999999999999999999996 477777899999999
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEe
Q 027808 144 VLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 215 (218)
Q Consensus 144 vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~ 215 (218)
+|+||+++|+++|++++||+|+++|++|++||+.+|++|.+||++++|+|++|+|..||+|++||||++|++
T Consensus 77 ~l~nl~aiL~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~fg~~~PArt~V~V~~L~~~~lVEIe~iA~l 148 (148)
T 3m1x_A 77 VMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 148 (148)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHHTTCCCEEEEEECSCCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999975
No 15
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1
Probab=100.00 E-value=5.6e-36 Score=235.68 Aligned_cols=120 Identities=37% Similarity=0.669 Sum_probs=111.8
Q ss_pred CCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHHHHHH
Q 027808 70 NKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVLKNIG 149 (218)
Q Consensus 70 ~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl~nI~ 149 (218)
+..|++.|+|||++++|+++|+|||+|+|++ +|++..+|+++|++++|+||+
T Consensus 2 ~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~----------------------------~g~~~~~d~~~Q~~~~l~ni~ 53 (123)
T 2cwj_A 2 ETAPKPVGPYSQAVESGCFMFVSGQIPINPE----------------------------TGALEEGGFKESAKRALDNLK 53 (123)
T ss_dssp --CCCCCSSCCSCEEETTEEEEEEECCEEGG----------------------------GTEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccEEEECCEEEEeccCCCCCC----------------------------CCcCCCccHHHHHHHHHHHHH
Confidence 4578899999999999999999999999987 577768999999999999999
Q ss_pred HHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEecC
Q 027808 150 EILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 217 (218)
Q Consensus 150 ~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~p~ 217 (218)
++|+++|++++||+|+++|++|++||+.+|++|.+||++++|+||+++|..||+|++||||++|++|+
T Consensus 54 ~~L~~ag~~l~~vvk~~vyl~d~~df~~~n~~~~~~f~~~~Part~v~V~~L~~~~~VEIe~iA~~~~ 121 (123)
T 2cwj_A 54 AIVEGAGYSMDDIVKVTVYITDISRFSEFNEVYREYFNRPYPARAVVGVAALPLGAPLEVEAVLYTCR 121 (123)
T ss_dssp HHHHHTSCCGGGCCEEEEEESSSSHHHHHHHHHHTTCCSSCCEEEEEECSCCGGGCSEEEEEECBC--
T ss_pred HHHHHcCCCHHHeEEEEEEEcCHHHHHHHHHHHHHHcCCCCCcEEEEEhhcCCCCCEEEEEEEEEeCC
Confidence 99999999999999999999999999999999999999889999999999999999999999999874
No 16
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1
Probab=100.00 E-value=7.1e-35 Score=239.75 Aligned_cols=124 Identities=47% Similarity=0.774 Sum_probs=117.9
Q ss_pred ccccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHH
Q 027808 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQ 143 (218)
Q Consensus 64 ~~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~ 143 (218)
++.|++++.|++.|+|||++++||++|+|||+|+||+ +|++..+|+++|+++
T Consensus 33 ~~~i~~~~~p~~~g~YS~av~~g~~lfvSGq~~~d~~----------------------------tG~l~~~d~~~Qt~~ 84 (156)
T 1xrg_A 33 IEVVKTNKAPEAIGPYSQAIVTGSFVYTSGQIPINPQ----------------------------TGEVVDGGIEEQAKQ 84 (156)
T ss_dssp CEEECCTTSCCCCSSCCSEEEETTEEEECCBCCBCTT----------------------------TSSBCSSSHHHHHHH
T ss_pred eeEEcCCCCCCCCCCCCCEEEECCEEEEEeECCcCCC----------------------------CCcCCCcCHHHHHHH
Confidence 3458889999999999999999999999999999997 677767899999999
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEe
Q 027808 144 VLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 215 (218)
Q Consensus 144 vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp~~~lVEIEaiA~~ 215 (218)
+|+||+++|+++|++++||+|+++|++|++||+.+|++|.+||++++|+|++|+|..||+|++||||++|++
T Consensus 85 ~l~ni~~iL~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~~~PArt~V~V~~Lp~~~lVEIe~iA~~ 156 (156)
T 1xrg_A 85 VLENLKNVLEAAGSSLNKVVKTTVFIKDMDSFAKVNEVYAKYFSEPYPARSCVEVSKLPKGVLIEIEAVAIK 156 (156)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHTTCCSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHhCCCHHHEEEEEEEECChHHHHHHHHHHHHHcCCCCCceEEEEcCCCCCCCeEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999899999999999999999999999974
No 17
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus}
Probab=100.00 E-value=2.7e-35 Score=241.41 Aligned_cols=134 Identities=37% Similarity=0.626 Sum_probs=117.7
Q ss_pred CCCccccccchhcccccccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcc
Q 027808 49 STPFACLSTSAVSNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQ 128 (218)
Q Consensus 49 ~~p~~~~~~~~~~~~~~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~ 128 (218)
..||. ....|++.|++++.|+|.|+|||++++||++|+|||+|+|++
T Consensus 16 ~~~~~-----~~~~M~~~i~~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~---------------------------- 62 (153)
T 3vcz_A 16 ENLYF-----QSNAMTKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPA---------------------------- 62 (153)
T ss_dssp ---------------CEEECCTTSCCCCSSCBSEEECSSEEEECCBCSCCTT----------------------------
T ss_pred CCccc-----cccccceEEcCCCCCCCCCCcCCEEEECCEEEEeeecccCCC----------------------------
Confidence 45665 345578889999999999999999999999999999999997
Q ss_pred cCccccccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCC----CCceEEEEcCCCCCC
Q 027808 129 TGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSP----APARATYQVAALPLD 204 (218)
Q Consensus 129 tG~~~~~di~~Qt~~vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~----~PArt~V~V~~Lp~~ 204 (218)
+|++ .+|+++|++++|+||+++|+++|++++||+|+++|++|++||+.+|++|.+||++. +|+||+|+|..||.|
T Consensus 63 ~g~v-~~d~~~Qt~~~l~nl~a~L~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~~~~~~~PArt~V~V~~L~~~ 141 (153)
T 3vcz_A 63 TGEV-PADIAAQARQSLDNVKAVVEASGLTVGDIVKMTVFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPKD 141 (153)
T ss_dssp TCCC-CSSHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHHHHTTCSSCCEEEEEECSBCGGG
T ss_pred CCee-CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCchHHHHHHHHHHHHhCCCCCCCCCCEEEEEeccCCCC
Confidence 4554 68999999999999999999999999999999999999999999999999999976 999999999999999
Q ss_pred ceEEEEEEEEec
Q 027808 205 ARVEIECIAALP 216 (218)
Q Consensus 205 ~lVEIEaiA~~p 216 (218)
++||||++|+++
T Consensus 142 ~lVEIeaiA~~~ 153 (153)
T 3vcz_A 142 VGIEIEAIAVRK 153 (153)
T ss_dssp CSEEEEEEEEC-
T ss_pred CEEEEEEEEEeC
Confidence 999999999864
No 18
>3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} SCOP: d.79.1.0
Probab=100.00 E-value=3.5e-34 Score=230.39 Aligned_cols=124 Identities=25% Similarity=0.426 Sum_probs=114.0
Q ss_pred ccccccCC-CCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHH
Q 027808 64 KEAVVTNK-APAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTE 142 (218)
Q Consensus 64 ~~~i~~~~-~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~ 142 (218)
++.|++.+ .|+|.|+||+++++|+++|+|||+|+|++ +|++..++ ++|++
T Consensus 3 ~~~inp~~~~p~p~g~ys~av~~g~~lfvSGq~~~d~~----------------------------~g~~~~~~-~~Q~~ 53 (138)
T 3lme_A 3 LKIIAPTDKTITPSGTWSIGARAGDFVFIGGMHGTDRV----------------------------TGKMVDGD-EARIR 53 (138)
T ss_dssp CEECCCCTTSCCCCSSCBSEEEETTEEEEEEEESBCTT----------------------------TCCBCSSH-HHHHH
T ss_pred ceEeCCCCCCCCCCCCCCCEEEECCEEEEeccCCcCCC----------------------------CCcCCcCH-HHHHH
Confidence 35677666 99999999999999999999999999997 56655555 79999
Q ss_pred HHHHHHHHHHHHcCCCccceEEEEEEecCCCCHH-HHHHHHHHhCCC-CCCceEEEEcCCCCCCceEEEEEEEEec
Q 027808 143 QVLKNIGEILKASGADYSSVVKTTILLADLKDFK-TVNEIYAKYFPS-PAPARATYQVAALPLDARVEIECIAALP 216 (218)
Q Consensus 143 ~vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~-~vnev~~e~F~~-~~PArt~V~V~~Lp~~~lVEIEaiA~~p 216 (218)
++|+||+++|+++|++++||+|+++|++|++||. .+|++|.+||++ ++|+||+|+|..||+|++||||++|.++
T Consensus 54 ~~l~ni~~~L~~aG~~l~~Vvk~~vyl~d~~d~~~~~n~v~~~~f~~~~~PArt~v~V~~L~~~~lVEIe~iA~~~ 129 (138)
T 3lme_A 54 RMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAP 129 (138)
T ss_dssp HHHHHHHHHHHTTTCCGGGEEEEEEEESCHHHHHHHHHHHHHHHHTTCCCCBEEEEECSCCGGGCSEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCHHHeEEEEEEECCHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcCCCCCEEEEEEEEEEc
Confidence 9999999999999999999999999999999996 799999999995 8999999999999999999999999986
No 19
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae}
Probab=100.00 E-value=3.7e-34 Score=237.42 Aligned_cols=140 Identities=25% Similarity=0.384 Sum_probs=102.9
Q ss_pred cCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccC--CcccCcc----ccccHHHHHH
Q 027808 69 TNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFES--PFQTGKF----VSDTIEDQTE 142 (218)
Q Consensus 69 ~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~--~~~tG~~----~~~di~~Qt~ 142 (218)
++++|+|.|+|||++++||+||+|||+|+++++ |+++.+...++.... ...+|++ ..+|+++|++
T Consensus 4 ~~~ap~p~g~Ys~av~~G~~lfvSGq~~~~~~~---------g~l~~g~~~~~~~~~~~~g~~G~~g~~~~~~d~~~Qt~ 74 (165)
T 3lyb_A 4 EAGAGAPLARYAAWRRAGDFIFLSGIIPVNPLT---------GTIVNGFQDVPEPVRELLGATGEFSTDAKQGPILAQSW 74 (165)
T ss_dssp -----------CCEEEETTEEEECCBCCEETTT---------TEECCSGGGSCHHHHHHHTCCSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCEEEECCEEEEeeeCCcCCCC---------CeEccCcccccccccccccccccccccccccCHHHHHH
Confidence 567899999999999999999999999999871 121100000000000 0001111 1138999999
Q ss_pred HHHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCC-C-CCceEEEEEEEEecC
Q 027808 143 QVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAAL-P-LDARVEIECIAALPN 217 (218)
Q Consensus 143 ~vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~L-p-~~~lVEIEaiA~~p~ 217 (218)
++|+||+++|+++|++++||+|+++||+|++||+.+|++|.+||++++|+|++|+|..| | ++++||||++|++|+
T Consensus 75 ~~l~Ni~aiL~~aG~~l~~Vvkvtvyl~d~~df~~~n~v~~~~f~~~~PArt~V~V~~L~p~~~~lVEIe~iA~~~~ 151 (165)
T 3lyb_A 75 YVLESIRRTVASAGGQMSDVIKLVQYFRNLDHFPYYSRVRKLFYPDQPPVSTVVQVSEMLPDATVLIEVEATVWLPP 151 (165)
T ss_dssp HHHHHHHHHHHTTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHCSSCCCEEEEEECSCCSSCTTCCEEEEEEEECC-
T ss_pred HHHHHHHHHHHHhcCChhHhEEEEEEECCHHHhHHHHHHHHHHcCCCCCceEEEEccccCCCCCCEEEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999 8 899999999999885
No 20
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1
Probab=100.00 E-value=1.8e-33 Score=223.60 Aligned_cols=123 Identities=26% Similarity=0.423 Sum_probs=113.4
Q ss_pred ccccccCCC--CCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHH
Q 027808 64 KEAVVTNKA--PAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQT 141 (218)
Q Consensus 64 ~~~i~~~~~--p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt 141 (218)
++.|++++. +++.++|||++++|+++|+|||+|+|++ |++ .+|+++|+
T Consensus 4 ~~~inp~~~~~~~~~~~ys~av~~g~~l~vSGq~~~~~~-----------------------------g~~-~~d~~~Q~ 53 (131)
T 1pf5_A 4 RTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSRED-----------------------------GTP-EPDFQQQV 53 (131)
T ss_dssp CEEECCSSCCTTTTTTTCCSEEEETTEEEEEEECCBCTT-----------------------------SCB-CSSHHHHH
T ss_pred ceeeCCCCccCCCCCCCcCCEEEECCEEEEcccCCcCCC-----------------------------Ccc-CcCHHHHH
Confidence 356777765 4678899999999999999999999987 554 57999999
Q ss_pred HHHHHHHHHHHHHcCCCccceEEEEEEecCC-CCHHHHHHHHHHhCC-CCCCceEEEEcCCCCCCceEEEEEEEEecC
Q 027808 142 EQVLKNIGEILKASGADYSSVVKTTILLADL-KDFKTVNEIYAKYFP-SPAPARATYQVAALPLDARVEIECIAALPN 217 (218)
Q Consensus 142 ~~vl~nI~~iL~~aG~~l~dVvkvtvyl~d~-~df~~vnev~~e~F~-~~~PArt~V~V~~Lp~~~lVEIEaiA~~p~ 217 (218)
+++|+||+++|+++|++++||+|+++|++|+ +||+.+|++|.+||+ +++|+||+++|..|| |++||||++|++|+
T Consensus 54 ~~~l~ni~~~L~~aG~~~~~vvk~~vyl~d~~~~~~~~~~~~~~~f~~~~~Part~v~V~~L~-~~~VEIe~iA~~~~ 130 (131)
T 1pf5_A 54 RLAFDNLHATLAAAGCTFDDIIDVTSFHTDPENQFEDIMTVKNEIFSAPPYPNWTAVGVTWLA-GFDFEIKVIARIPE 130 (131)
T ss_dssp HHHHHHHHHHHHTTTCCGGGEEEEEEEESSGGGTHHHHHHHHHHHSCSSSCCCCEEEECSCST-TCSEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEEEEEEcCcHHhHHHHHHHHHHHcCCCCCCCeEEEeecccC-CccEEEEEEEEeCC
Confidence 9999999999999999999999999999999 999999999999998 589999999999999 99999999999986
No 21
>2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro structure initiative; 1.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.4e-33 Score=227.65 Aligned_cols=116 Identities=19% Similarity=0.280 Sum_probs=108.3
Q ss_pred CCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccc-cc---cHHHHHHHHHHHH
Q 027808 73 PAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFV-SD---TIEDQTEQVLKNI 148 (218)
Q Consensus 73 p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~-~~---di~~Qt~~vl~nI 148 (218)
|++.++|||++++|+++|+|||+|++++ |++. .+ |+++|++++|+||
T Consensus 14 ~~~~~~ys~av~~g~~l~vSGq~~~~~~-----------------------------g~~~~~~~~~d~~~Q~~~~l~ni 64 (144)
T 2ig8_A 14 DLPDASWSNALLVGEELVMSGMTAHPAT-----------------------------RQAAERGAALDAHAQALVVLGKV 64 (144)
T ss_dssp CCTTCSSCSEEEETTEEEECCBCCTTHH-----------------------------HHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCCCcCCEEEECCEEEEeeeCCcCCC-----------------------------CcEecCCCCcCHHHHHHHHHHHH
Confidence 8889999999999999999999999986 3333 45 9999999999999
Q ss_pred HHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhC--CCCCCceEEEEcCCCCC-CceEEEEEEEEecC
Q 027808 149 GEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF--PSPAPARATYQVAALPL-DARVEIECIAALPN 217 (218)
Q Consensus 149 ~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F--~~~~PArt~V~V~~Lp~-~~lVEIEaiA~~p~ 217 (218)
+++|+++|++++||+|+++|++|++||+.+|++|.+|| ++++|+|++|+|+.||. |++||||++|++++
T Consensus 65 ~~~L~~aG~~l~~vvk~~vyl~d~~df~~~~~v~~~~f~~~~~~PArt~v~V~~L~~p~~~VEIe~iA~~~~ 136 (144)
T 2ig8_A 65 KALLEAAGGHVGNLYKLNVYVTRIADKDAIGRARQEFFAGQGTFPASTLVEVSGLVFPELLVEIDAWARLDI 136 (144)
T ss_dssp HHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHTTTCSSCCEEEEEECSBCSSTTCCEEEEEEEETTC
T ss_pred HHHHHHcCCCHHHEEEEEEEECChHHHHHHHHHHHHHhcCCCCCCCEEEEEecccCCCCCEEEEEEEEEeCC
Confidence 99999999999999999999999999999999999999 56899999999999986 99999999999874
No 22
>3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis}
Probab=100.00 E-value=7.9e-33 Score=226.28 Aligned_cols=119 Identities=31% Similarity=0.394 Sum_probs=110.4
Q ss_pred ccccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHH
Q 027808 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQ 143 (218)
Q Consensus 64 ~~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~ 143 (218)
++.|+++..|++.++|||++++|+++|+|||++++ +|+++|+++
T Consensus 4 r~~i~~~~~~~~~~~YS~av~~G~~lfvSGq~~~~------------------------------------~d~~~Qt~~ 47 (149)
T 3i7t_A 4 RTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSG------------------------------------DDIAAQTRD 47 (149)
T ss_dssp EEEECCCCHHHHHHTCCSEEEETTEEEEEEEECCS------------------------------------SSHHHHHHH
T ss_pred ceEecCCCCCCCCCCcCCEEEECCEEEEeccCCCC------------------------------------CCHHHHHHH
Confidence 45688999999999999999999999999998764 367999999
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCC-CCceEEEEEEEEecCC
Q 027808 144 VLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALP-LDARVEIECIAALPNA 218 (218)
Q Consensus 144 vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp-~~~lVEIEaiA~~p~a 218 (218)
+|+||+++|+++|++++||+|+++|++|++||+.+|++|.+||++++|+||+|+|..|+ ++++||||++|++|+|
T Consensus 48 ~l~ni~aiL~~aG~~l~dVvk~tvyl~d~~df~~~n~v~~~~f~~~~PArt~V~V~~L~~~~~lVEIe~iA~~~~~ 123 (149)
T 3i7t_A 48 ALRRIEIALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVGSA 123 (149)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHHTTTCCBCCEEECSCCSSTTCCEEEEEEEEC---
T ss_pred HHHHHHHHHHHccCCHhHEEEEEEEECCHHHHHHHHHHHHHHcCCCCCceEEEEeccCCCCCCEEEEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999998 7999999999999874
No 23
>3i3f_A Hypothetical protein; structural genomics, niaid, decode, infectious seattle structural genomics center for infectious disease, unknown function; 1.35A {Giardia lamblia}
Probab=99.98 E-value=4.5e-32 Score=218.56 Aligned_cols=121 Identities=24% Similarity=0.358 Sum_probs=110.8
Q ss_pred ccccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHH
Q 027808 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQ 143 (218)
Q Consensus 64 ~~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~ 143 (218)
++.++++..+++ ++|||++++||++|+|||+|+|++ |++.. |+++|+++
T Consensus 15 ~~~~~p~~~~~~-~~ys~av~~g~~vfvSGq~~~d~~-----------------------------g~~~~-~~~~Q~~~ 63 (141)
T 3i3f_A 15 PTFLVCPDVVKF-ENVGQIAVVNGMVYLGGSVGIDKS-----------------------------GTLHK-GLEEQTRQ 63 (141)
T ss_dssp CEEECCTTSCCC-TTCBCEEEETTEEEECCBCSBCTT-----------------------------SCBCS-HHHHHHHH
T ss_pred eeEECCCCCCCC-CCcCcEEEECCEEEEeeeCCcCCC-----------------------------CCCCc-CHHHHHHH
Confidence 456777777776 899999999999999999999986 55544 59999999
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEEecCCC---CHHHHHHHHHHhC--CCCCCceEEEEcCCCCCCceEEEEEEEEec
Q 027808 144 VLKNIGEILKASGADYSSVVKTTILLADLK---DFKTVNEIYAKYF--PSPAPARATYQVAALPLDARVEIECIAALP 216 (218)
Q Consensus 144 vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~---df~~vnev~~e~F--~~~~PArt~V~V~~Lp~~~lVEIEaiA~~p 216 (218)
+|+||+++|+++|++++||+|+++|++|++ ||+.+|++|.+|| ++++|+||+++ +.||+|++||||++|++-
T Consensus 64 ~l~nl~~~L~~aG~~~~~Vvk~~vyl~d~~~~~df~~~n~v~~~~f~~~~~~Part~v~-~~L~~~~lVEIe~iA~~~ 140 (141)
T 3i3f_A 64 TFDNIRKCLEYANSGLDYIVSLNIFLSTSLSDSEEARFNELYREVFCVPATRPCRCCVR-AQLQEGLLVEVVNVVAAQ 140 (141)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEEEETTCCHHHHHHHHHHHHHHSCCGGGCCEEEEEE-EBCSTTCSEEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCHHHEEEEEEEEcCCccccCHHHHHHHHHHHhCCCCCCCcEEEEh-hhCCCCCEEEEEEEEEEc
Confidence 999999999999999999999999999999 9999999999999 56899999999 999999999999999874
No 24
>2otm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.85A {Shewanella oneidensis} SCOP: d.79.1.1
Probab=99.97 E-value=1.7e-32 Score=224.66 Aligned_cols=137 Identities=17% Similarity=0.186 Sum_probs=114.3
Q ss_pred hhcccccc-cccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccH
Q 027808 59 AVSNLKEA-VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTI 137 (218)
Q Consensus 59 ~~~~~~~~-i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di 137 (218)
....+++. |.++..|+|.|+|||++++||++|+|||+|+|++. ..+.|++ .+.+..+|+
T Consensus 6 ~~~~l~~l~i~~~~~~~~~g~Ys~av~~g~~v~vSGQ~~~~~~~-----~~~~G~~---------------~~~~~~~~~ 65 (154)
T 2otm_A 6 PESRLVAAGLELPEVAAALGNYEPYSIVGSQLMTSGQFPYLQGK-----LLYQGQL---------------GADYTVSEG 65 (154)
T ss_dssp HHHHHHHTTCCCCCCCCCSSSSCSEEEETTEEEECCBCCEETTE-----ECCBSCB---------------TTTBCHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCCcCEEEECCEEEEeccCCCCCCc-----ccccccc---------------cCccCchhH
Confidence 34555554 78999999999999999999999999999999861 0111222 111223679
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccc---eEEEEEEecCCCCHHHH-------HHHHHHhCCC-CCCceEEEEcCCCCCCce
Q 027808 138 EDQTEQVLKNIGEILKASGADYSS---VVKTTILLADLKDFKTV-------NEIYAKYFPS-PAPARATYQVAALPLDAR 206 (218)
Q Consensus 138 ~~Qt~~vl~nI~~iL~~aG~~l~d---Vvkvtvyl~d~~df~~v-------nev~~e~F~~-~~PArt~V~V~~Lp~~~l 206 (218)
++|++++|+||+++|+++|+++++ |+|+++|++|++||..+ +++|.+||++ ++|+||+|+|+.||+|++
T Consensus 66 ~~Qa~~~~~Ni~a~L~~ag~~l~~~~~VVk~tvyv~d~~df~~~~~v~~~~~~~~~~~fg~~~~PArt~v~V~~Lp~~~~ 145 (154)
T 2otm_A 66 YAACRLATLNAIAQLKQACGELSRIKQIYRLEGVLNVHQSCIEHPKALDGASDLLLEIFGEAGRHSRMIWTNPVMPLNSL 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSGGGCCEEEEEEEEECBCTTCCCHHHHHHHHHHHHHHHHGGGGCCEEEEEECSSCGGGBS
T ss_pred HHHHHHHHHHHHHHHHHcCCCccccCcEEEEEEEECCcHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEccccCCCCE
Confidence 999999999999999999999886 99999999999998765 5999999996 699999999999999999
Q ss_pred EEEEEEEEe
Q 027808 207 VEIECIAAL 215 (218)
Q Consensus 207 VEIEaiA~~ 215 (218)
||||++|.+
T Consensus 146 VEIEaiA~~ 154 (154)
T 2otm_A 146 CLVYLFAEL 154 (154)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEC
Confidence 999999974
No 25
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=99.97 E-value=1.4e-31 Score=213.46 Aligned_cols=109 Identities=31% Similarity=0.469 Sum_probs=101.5
Q ss_pred CCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHHHHHHHHHHH
Q 027808 75 ALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVLKNIGEILKA 154 (218)
Q Consensus 75 ~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl~nI~~iL~~ 154 (218)
+.++|||++++||++|+|||+|.++ +|+++|++++|+||+++|++
T Consensus 16 ~~~~ys~av~~g~~lfvSGq~~~d~-----------------------------------~d~~~Q~~~~l~nl~~~L~~ 60 (128)
T 3kjj_A 16 TTPRYSEAVGANGLIFLSGMVPENG-----------------------------------ETAAEQTADVLAQIDRWLAE 60 (128)
T ss_dssp ECSSCEEEEEETTEEEECCBCCSSC-----------------------------------SSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCcEEEECCEEEEeecCCCCC-----------------------------------CCHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999998762 46899999999999999999
Q ss_pred cCCCccceEEEEEEecCCCCHHHHHHHHHHhCCC-CCCceEEEEcCCCCCCceEEEEEEEEecCC
Q 027808 155 SGADYSSVVKTTILLADLKDFKTVNEIYAKYFPS-PAPARATYQVAALPLDARVEIECIAALPNA 218 (218)
Q Consensus 155 aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~-~~PArt~V~V~~Lp~~~lVEIEaiA~~p~a 218 (218)
+|++++||+|+++|++|++||+.+|++|.+||++ ++|+|++++|..||+|++||||++|++|+.
T Consensus 61 aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~~~~PArt~v~v~ll~~~~lVEIe~iA~~~d~ 125 (128)
T 3kjj_A 61 CGSDKAHVLDAVIYLRDMGDYAEMNGVWDAWVAAGRTPARACVEARLARPEWRVEIKITAVKRDA 125 (128)
T ss_dssp TTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSCTTCCCEEEEEECBCSSTTCCEEEEEEEECCC-
T ss_pred cCCCHHHEEEEEEEECCHHHHHHHHHHHHHHhCCCCCCCEEEEEccccCCCCEEEEEEEEEeccc
Confidence 9999999999999999999999999999999996 799999999987899999999999999873
No 26
>3d01_A Uncharacterized protein; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; HET: PG5; 1.70A {Agrobacterium tumefaciens str}
Probab=99.97 E-value=6.1e-32 Score=223.63 Aligned_cols=133 Identities=28% Similarity=0.331 Sum_probs=111.4
Q ss_pred hcccc-cccccCCCCCCCCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCcccc----
Q 027808 60 VSNLK-EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVS---- 134 (218)
Q Consensus 60 ~~~~~-~~i~~~~~p~~~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~---- 134 (218)
.+.++ ..|+++..|+|.|+|||++++|+++|+|||+|++++.. .+ +|++..
T Consensus 15 e~~l~~~~i~~~~~p~p~g~Ys~av~~g~~lfvSGq~~~~~~~~-----~~-------------------~G~~~~~~~~ 70 (165)
T 3d01_A 15 EGRLKELGFTLPVAAAPAANYVPFTISGNLLYVSGQLPMESGKI-----AV-------------------TGLVGRDVDV 70 (165)
T ss_dssp HHHHHHTTCCCCCC-----CBCSEEEETTEEEEEEECCEETTEE-----CS-------------------BSCBTTTBCH
T ss_pred HHHHHhcCcCCCCCCCCCCCccCEEEECCEEEEeeECCCCCCCc-----cc-------------------cccccCccCc
Confidence 44553 45889999999999999999999999999999998610 01 244432
Q ss_pred ccHHHHHHHHHHHHHHHHHHcC-CCcc---ceEEEEEEecCCCCHHH----HH---HHHHHhCCC-CCCceEEEEcCCCC
Q 027808 135 DTIEDQTEQVLKNIGEILKASG-ADYS---SVVKTTILLADLKDFKT----VN---EIYAKYFPS-PAPARATYQVAALP 202 (218)
Q Consensus 135 ~di~~Qt~~vl~nI~~iL~~aG-~~l~---dVvkvtvyl~d~~df~~----vn---ev~~e~F~~-~~PArt~V~V~~Lp 202 (218)
+|+++|++++|+||+++|+++| ++++ ||+|+++|++|++||+. +| ++|.+||++ ++|+||+|+|..||
T Consensus 71 ~d~~~Qa~~~l~ni~~~L~~ag~~~l~~v~~Vvk~tvyv~d~~df~~~~~v~ngas~~~~~~f~~~~~PArt~V~V~~Lp 150 (165)
T 3d01_A 71 ASAQRAAELCAVNILAQVKAALNGDLSKIRRVIKLNGFVASVPEFVEQHLVINGASNLIATVLGEPGRHARAAVGMASLP 150 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCGGGCCEEEEEEEEEEBCTTCCCHHHHHHHHHHHHHHHHCGGGCBEEEEEEESBCG
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCChhhhCCEEEEEEEECCHHHhhHHHHHhhhHHHHHHHHhCCCCCCceEEEEcccCC
Confidence 7999999999999999999999 9999 99999999999999988 68 999999997 69999999999999
Q ss_pred CCceEEEEEEEEec
Q 027808 203 LDARVEIECIAALP 216 (218)
Q Consensus 203 ~~~lVEIEaiA~~p 216 (218)
+|++||||++|++.
T Consensus 151 ~~~~VEIe~iA~~~ 164 (165)
T 3d01_A 151 FNASVEIDAIVEID 164 (165)
T ss_dssp GGBSEEEEEEEEC-
T ss_pred CCCEEEEEEEEEEe
Confidence 99999999999863
No 27
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1
Probab=99.97 E-value=4e-31 Score=209.73 Aligned_cols=111 Identities=16% Similarity=0.232 Sum_probs=103.2
Q ss_pred CCCCCC-CCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHHHHHHH
Q 027808 72 APAALG-PYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVLKNIGE 150 (218)
Q Consensus 72 ~p~~~g-pYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl~nI~~ 150 (218)
.|.+.+ +||+++++|+++|+|||+|.. ++|+++|++++|+||++
T Consensus 7 ~~~~~~~~ys~av~~g~~l~vSGq~~~~-----------------------------------~~d~~~Q~~~~l~ni~~ 51 (126)
T 2ewc_A 7 YDVNEDRGHTGLVEAGDFYYLNYCVGNV-----------------------------------GQDIESQINGAFDEMER 51 (126)
T ss_dssp EEEETTTTEEEEEEETTEEEEEEECCST-----------------------------------TSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcccEEEECCEEEEeCcCCCC-----------------------------------CcCHHHHHHHHHHHHHH
Confidence 455666 899999999999999997531 45789999999999999
Q ss_pred HHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCC----CCceEEEEEEEEecC
Q 027808 151 ILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALP----LDARVEIECIAALPN 217 (218)
Q Consensus 151 iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~~PArt~V~V~~Lp----~~~lVEIEaiA~~p~ 217 (218)
+|+++|++++||+|+++|++|++||+.+|++|.+||++++|+|++++|..|| +|++||||++|++|+
T Consensus 52 ~L~~aG~~l~~Vvk~~vyl~d~~df~~~n~v~~~~f~~~~Part~v~v~~l~~~~~~~~lVEIe~iA~~~~ 122 (126)
T 2ewc_A 52 RLALVGLTLDAVVQMDCLFRDVWNIPVMEKMIKERFNGRYPARKSIQTEFAHHGGPQGLLFQVDGVAYSKH 122 (126)
T ss_dssp HHHTTTCCGGGEEEEEEEESSGGGHHHHHHHHHHHSTTCCCEEEEEECCCSSCCSTTCCCEEEEEEEECCC
T ss_pred HHHHcCCCHHHEEEEEEEECChhHHHHHHHHHHHHcCCCCCcEEEEEccCccCCCCCCcEEEEEEEEEecc
Confidence 9999999999999999999999999999999999999999999999999899 999999999999875
No 28
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa}
Probab=99.97 E-value=5.7e-31 Score=207.64 Aligned_cols=107 Identities=31% Similarity=0.501 Sum_probs=100.3
Q ss_pred CCCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHHHHHHHHHHHc
Q 027808 76 LGPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVLKNIGEILKAS 155 (218)
Q Consensus 76 ~gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl~nI~~iL~~a 155 (218)
.++|||++++||++|+|||+|.|+. +|+++|++++|+||+++|+++
T Consensus 8 ~~~ys~av~~g~~vfvSGq~~~d~~----------------------------------~d~~~Q~~~~l~ni~~~L~~a 53 (122)
T 3k12_A 8 VKRRAEMALHGNTVYIGGQVADDPS----------------------------------GDIQDQTRQILENIDRLLQSV 53 (122)
T ss_dssp EEEEEEEEEETTEEEEEEECCSSTT----------------------------------SCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCCEEEECCEEEEeeccCCCCC----------------------------------CCHHHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999998753 478999999999999999999
Q ss_pred CCCccceEEEEEEecCCCCHHHHHHHHHHhCCC-CCCceEEEEcCCCCCCceEEEEEEEEec
Q 027808 156 GADYSSVVKTTILLADLKDFKTVNEIYAKYFPS-PAPARATYQVAALPLDARVEIECIAALP 216 (218)
Q Consensus 156 G~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~-~~PArt~V~V~~Lp~~~lVEIEaiA~~p 216 (218)
|++++||+|+++|++|++||+.+|++|.+||++ ++|+|++|++..||+|++||||++|...
T Consensus 54 G~~~~~Vvk~tvyl~d~~df~~~n~v~~~~f~~~~~Part~v~~~ll~~~~lVEIe~iA~~~ 115 (122)
T 3k12_A 54 GSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEGRAPTRACSLAELIDPRWRVEMIVVAARE 115 (122)
T ss_dssp TCCGGGEEEEEEEESCGGGHHHHHHHHTTTSCTTCCCEEEEEECBCSSTTCSEEEEEEEECC
T ss_pred CCCHHHEEEEEEEEcCchHHHHHHHHHHHHhCCCCCCCEEEEEcccCCCCCEEEEEEEEEec
Confidence 999999999999999999999999999999995 8999999998777899999999999864
No 29
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=99.97 E-value=4.7e-30 Score=203.09 Aligned_cols=104 Identities=30% Similarity=0.441 Sum_probs=97.1
Q ss_pred CCCccEEEECCEEEEeeeccCCCCcccccccccccceeeeeeecccccCCcccCccccccHHHHHHHHHHHHHHHHHHcC
Q 027808 77 GPYSQAIKANNLVFVSGVLGLVPEVCYVSLLSFIGTISCRILTIYVFESPFQTGKFVSDTIEDQTEQVLKNIGEILKASG 156 (218)
Q Consensus 77 gpYS~av~~g~~vfvSGq~~~dp~~~~~~~~~~aG~~~~~~~~~~~~~~~~~tG~~~~~di~~Qt~~vl~nI~~iL~~aG 156 (218)
++||+++++|+++|+|||+|.|+ +|+++|++++|+||+++|+++|
T Consensus 12 ~~ys~av~~g~~lfvSGq~~~d~-----------------------------------~d~~~Q~~~~l~nl~~~L~~aG 56 (124)
T 3gtz_A 12 DRWSDVVIYNNTLWYTGVPENLD-----------------------------------ADAFEQTANTLAQIDAVLEKQG 56 (124)
T ss_dssp SSCEEEEEETTEEEEEECCSCTT-----------------------------------SCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCCEEEECCEEEEeccCCCCC-----------------------------------CCHHHHHHHHHHHHHHHHHHcC
Confidence 68999999999999999998763 3689999999999999999999
Q ss_pred CCccceEEEEEEecCCCCHHHHHHHHHHhCC-CCCCceEEEEcCCCCC-CceEEEEEEEEec
Q 027808 157 ADYSSVVKTTILLADLKDFKTVNEIYAKYFP-SPAPARATYQVAALPL-DARVEIECIAALP 216 (218)
Q Consensus 157 ~~l~dVvkvtvyl~d~~df~~vnev~~e~F~-~~~PArt~V~V~~Lp~-~~lVEIEaiA~~p 216 (218)
++++||+|+++|++|++||+.+|++|.+||+ +++|+||+|+ ..|+. |++||||++|.+.
T Consensus 57 ~~~~~Vvk~tvyl~d~~df~~~n~v~~~~f~~~~~Part~v~-~~L~~p~~lVEIe~iA~~~ 117 (124)
T 3gtz_A 57 SSKSRILDATIFLSDKADFAAMNKAWDAWVVAGHAPVRCTVQ-AGLMNPKYKVEIKIVAAVE 117 (124)
T ss_dssp CCGGGEEEEEEEESCGGGHHHHHHHHHHHSCTTCCCEEEEEE-CEESSTTCSEEEEEEEEC-
T ss_pred CCHHHEEEEEEEECCHHHHHHHHHHHHHHhCCCCCCcEEEEe-cccCCCCCEEEEEEEEEec
Confidence 9999999999999999999999999999999 5899999999 78875 9999999999864
No 30
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=28.73 E-value=73 Score=26.68 Aligned_cols=55 Identities=7% Similarity=0.067 Sum_probs=38.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHcC-CCccceEEEEEEecCCCCHHHHHHHHHHhCCCC
Q 027808 134 SDTIEDQTEQVLKNIGEILKASG-ADYSSVVKTTILLADLKDFKTVNEIYAKYFPSP 189 (218)
Q Consensus 134 ~~di~~Qt~~vl~nI~~iL~~aG-~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~~ 189 (218)
.-+.++-++.+++.+++.|+... .++++ |++.+|=.|...+..|.+.+.+.|++.
T Consensus 163 G~P~~~aA~i~~~~v~~fl~~~~~~~l~~-V~fv~f~~d~~~~~~f~~~l~~r~~~~ 218 (221)
T 3q71_A 163 GFPKNIFAELIISEVFKFSSKNQLKTLQE-VHFLLHPSDHENIQAFSDEFARRANGN 218 (221)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCCSSCCE-EEEEECTTCHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEEeCCCHHHHHHHHHHHHHHccCC
Confidence 44677788888999999998864 34443 344445445566789999999998854
No 31
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=24.75 E-value=1e+02 Score=24.71 Aligned_cols=51 Identities=8% Similarity=0.023 Sum_probs=36.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCCC
Q 027808 134 SDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPS 188 (218)
Q Consensus 134 ~~di~~Qt~~vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~~ 188 (218)
.-+.++-++.+++.+++.|+... ++ -++.+.+-|.++++.+.+.+.++|+.
T Consensus 127 g~p~~~aa~i~~~~v~~~l~~~~-~~---~~V~~v~~~~~~~~~~~~~l~~~~~~ 177 (184)
T 1spv_A 127 GYPRAAAAEIAVKTVSEFITRHA-LP---EQVYFVCYDEENAHLYERLLTQQGDE 177 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCC-SS---SEEEEEESSHHHHHHHHHHHHCC---
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC-CC---CEEEEEECCHHHHHHHHHHHHHhCCc
Confidence 45677777888888999888753 33 35555566778899999999988873
No 32
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=22.27 E-value=1.6e+02 Score=24.62 Aligned_cols=51 Identities=24% Similarity=0.241 Sum_probs=36.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEecCCCCHHHHHHHHHHhCC
Q 027808 134 SDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFP 187 (218)
Q Consensus 134 ~~di~~Qt~~vl~nI~~iL~~aG~~l~dVvkvtvyl~d~~df~~vnev~~e~F~ 187 (218)
.-+.++-++.+++.+++.|+....+++ ++.+.+-+..+++.+.+.+.+||+
T Consensus 183 g~p~~~aa~i~~~~v~~fl~~~~~~l~---~V~fv~f~~~~~~~y~~~l~~~fp 233 (235)
T 2x47_A 183 GYPCEAAAEIVLATLREWLEQHKDKVD---RLIICVFLEKDEDIYRSRLPHYFP 233 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHGGGCS---EEEEEECSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCC---eEEEEECCHHHHHHHHHHHHHhcC
Confidence 446677777888888888877543333 444555577788899999999986
No 33
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=21.20 E-value=1.4e+02 Score=21.55 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=36.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCCCcc------ceEEEEEEecCCCC-------HHHHHHHHHHhCC
Q 027808 134 SDTIEDQTEQVLKNIGEILKASGADYS------SVVKTTILLADLKD-------FKTVNEIYAKYFP 187 (218)
Q Consensus 134 ~~di~~Qt~~vl~nI~~iL~~aG~~l~------dVvkvtvyl~d~~d-------f~~vnev~~e~F~ 187 (218)
..+..++.+.+|+.|+-.|++-|++.+ +++++..-=..-.. -..+.+..+++++
T Consensus 5 ~~~~~~~I~~~L~~IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vP 71 (88)
T 1xhj_A 5 NPTMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVP 71 (88)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHHhcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCC
Confidence 356789999999999999999999854 23333332222211 2356777888875
Done!