BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027810
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 77/138 (55%), Gaps = 33/138 (23%)
Query: 10 DEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSV 69
DEGV+K I R+ + D V VHY G L + G FD++ + FSF+LGKG V
Sbjct: 34 DEGVLKVIKREGTGTEMPMIGDR--VFVHYTGWLLD-GTKFDSSLDRKDKFSFDLGKGEV 90
Query: 70 IRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSA 129
I+AWDIA+ +MKV GEV +TCKPEYAYGSA
Sbjct: 91 IKAWDIAIATMKV------------------------------GEVCHITCKPEYAYGSA 120
Query: 130 GSPPDVPPDATLIFEVEL 147
GSPP +PP+ATL+FEVEL
Sbjct: 121 GSPPKIPPNATLVFEVEL 138
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 79/146 (54%), Gaps = 33/146 (22%)
Query: 2 GDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFS 61
G I DEGV+K I R+ + D V VHY G L + G FD++ + FS
Sbjct: 22 GVDISPKQDEGVLKVIKREGTGTEMPMIGDR--VFVHYTGWLLD-GTKFDSSLDRKDKFS 78
Query: 62 FELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCK 121
F+LGKG VI+AWDIA+ +MKV GEV +TCK
Sbjct: 79 FDLGKGEVIKAWDIAIATMKV------------------------------GEVCHITCK 108
Query: 122 PEYAYGSAGSPPDVPPDATLIFEVEL 147
PEYAYGSAGSPP +PP+ATL+FEVEL
Sbjct: 109 PEYAYGSAGSPPKIPPNATLVFEVEL 134
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 79/146 (54%), Gaps = 33/146 (22%)
Query: 2 GDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFS 61
G I DEGV+K I R+ + D V VHY G L + G FD++ + FS
Sbjct: 42 GVDISPKQDEGVLKVIKREGTGTEMPMIGDR--VFVHYTGWLLD-GTKFDSSLDRKDKFS 98
Query: 62 FELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCK 121
F+LGKG VI+AWDIA+ +MKV GEV +TCK
Sbjct: 99 FDLGKGEVIKAWDIAIATMKV------------------------------GEVCHITCK 128
Query: 122 PEYAYGSAGSPPDVPPDATLIFEVEL 147
PEYAYGSAGSPP +PP+ATL+FEVEL
Sbjct: 129 PEYAYGSAGSPPKIPPNATLVFEVEL 154
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 113 GEVAKLTCKPEYAYGSAGSPP-DVPPDATLIFEVELVACRPRKGS 156
GE + + KP YA+GS G +PP+A L +E+ L + K S
Sbjct: 234 GEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKES 278
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 77/138 (55%), Gaps = 33/138 (23%)
Query: 10 DEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSV 69
DEGV+K I R+ D V VHY G L + G FD++ + FSF+LGKG V
Sbjct: 29 DEGVLKVIKREGTGTETPMIGDR--VFVHYTGWLLD-GTKFDSSLDRKDKFSFDLGKGEV 85
Query: 70 IRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSA 129
I+AWDIA+ +MKV GE+ ++TCKPEYAYGSA
Sbjct: 86 IKAWDIAVATMKV------------------------------GELCRITCKPEYAYGSA 115
Query: 130 GSPPDVPPDATLIFEVEL 147
GSPP +PP+ATL+FEVEL
Sbjct: 116 GSPPKIPPNATLVFEVEL 133
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 78/152 (51%), Gaps = 41/152 (26%)
Query: 1 MGDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVD----VHYEGSLAETGEVFDTTHED 56
G+ I D GV+K + R + E+ P++ VHY+G L+ G+ FD++H+
Sbjct: 21 QGEDITSKKDRGVLKIVKR------VGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDR 73
Query: 57 NTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVA 116
N F F LGKG VI+AWDI + +MK GE+
Sbjct: 74 NEPFVFSLGKGQVIKAWDIGVATMK------------------------------RGEIC 103
Query: 117 KLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
L CKPEYAYGSAGS P +P +ATL FE+EL+
Sbjct: 104 HLLCKPEYAYGSAGSLPKIPSNATLFFEIELL 135
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 78/152 (51%), Gaps = 41/152 (26%)
Query: 1 MGDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVD----VHYEGSLAETGEVFDTTHED 56
G+ I D GV+K + R + E+ P++ VHY+G L+ G+ FD++H+
Sbjct: 25 QGEDITSKKDRGVLKIVKR------VGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDR 77
Query: 57 NTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVA 116
N F F LGKG VI+AWDI + +MK GE+
Sbjct: 78 NEPFVFSLGKGQVIKAWDIGVATMK------------------------------KGEIC 107
Query: 117 KLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
L CKPEYAYGSAGS P +P +ATL FE+EL+
Sbjct: 108 HLLCKPEYAYGSAGSLPKIPSNATLFFEIELL 139
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 78/152 (51%), Gaps = 41/152 (26%)
Query: 1 MGDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVD----VHYEGSLAETGEVFDTTHED 56
G+ I D GV+K + R + E+ P++ VHY+G L+ G+ FD++H+
Sbjct: 25 QGEDITSKKDRGVLKIVKR------VGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDR 77
Query: 57 NTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVA 116
N F F LGKG VI+AWDI + +MK GE+
Sbjct: 78 NEPFVFSLGKGQVIKAWDIGVATMK------------------------------KGEIC 107
Query: 117 KLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
L CKPEYAYGSAGS P +P +ATL FE+EL+
Sbjct: 108 HLLCKPEYAYGSAGSLPKIPSNATLFFEIELL 139
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 78/152 (51%), Gaps = 41/152 (26%)
Query: 1 MGDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVD----VHYEGSLAETGEVFDTTHED 56
G+ I D GV+K + R + E+ P++ VHY+G L+ G+ FD++H+
Sbjct: 9 QGEDITSKKDRGVLKIVKR------VGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDR 61
Query: 57 NTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVA 116
N F F LGKG VI+AWDI + +MK GE+
Sbjct: 62 NEPFVFSLGKGQVIKAWDIGVATMK------------------------------KGEIC 91
Query: 117 KLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
L CKPEYAYGSAGS P +P +ATL FE+EL+
Sbjct: 92 HLLCKPEYAYGSAGSLPKIPSNATLFFEIELL 123
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 78/152 (51%), Gaps = 41/152 (26%)
Query: 1 MGDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVD----VHYEGSLAETGEVFDTTHED 56
G+ I D GV+K + R + E+ P++ VHY+G L+ G+ FD++H+
Sbjct: 9 QGEDITSKKDRGVLKIVKR------VGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDR 61
Query: 57 NTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVA 116
N F F LGKG VI+AWDI + +MK GE+
Sbjct: 62 NEPFVFSLGKGQVIKAWDIGVATMK------------------------------KGEIC 91
Query: 117 KLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
L CKPEYAYGSAGS P +P +ATL FE+EL+
Sbjct: 92 HLLCKPEYAYGSAGSLPKIPSNATLFFEIELL 123
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 78/152 (51%), Gaps = 41/152 (26%)
Query: 1 MGDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVD----VHYEGSLAETGEVFDTTHED 56
G+ I D GV+K + R + E+ P++ VHY+G L+ G+ FD++H+
Sbjct: 25 QGEDITSKKDRGVLKIVKR------VGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDR 77
Query: 57 NTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVA 116
N F F LGKG VI+AWDI + +MK GE+
Sbjct: 78 NEPFVFSLGKGQVIKAWDIGVATMK------------------------------KGEIC 107
Query: 117 KLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
L CKPEYAYGSAGS P +P +ATL FE+EL+
Sbjct: 108 HLLCKPEYAYGSAGSLPKIPSNATLFFEIELL 139
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 76/152 (50%), Gaps = 41/152 (26%)
Query: 1 MGDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVD----VHYEGSLAETGEVFDTTHED 56
G+ + D GV+K + R + E+ P++ VHY G LA G+ FD++H+
Sbjct: 21 QGEDVTSKKDRGVLKIVKR------VGHGEETPMIGDRVYVHYNGKLA-NGKKFDSSHDR 73
Query: 57 NTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVA 116
N F F +GKG VI+AWDI + +MK GE+
Sbjct: 74 NEPFVFSIGKGQVIKAWDIGVATMK------------------------------KGEIC 103
Query: 117 KLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
L CKPEYAYG+ GS P +P +ATL FEVEL+
Sbjct: 104 HLLCKPEYAYGATGSLPKIPSNATLFFEVELL 135
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 76/148 (51%), Gaps = 35/148 (23%)
Query: 2 GDSIDLT--GDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTV 59
G+ ID+T D GV+K I ++ + + PT V VHY G+L E G FD++ +
Sbjct: 3 GEKIDITPKKDGGVLKLIKKEGQ-GVVKPTTGT-TVKVHYVGTL-ENGTKFDSSRDRGDQ 59
Query: 60 FSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLT 119
FSF LG+G+VI+ WD+ + +M GEVA+ T
Sbjct: 60 FSFNLGRGNVIKGWDLGVATM------------------------------TKGEVAEFT 89
Query: 120 CKPEYAYGSAGSPPDVPPDATLIFEVEL 147
+ +Y YG AGSPP +P ATLIFEVEL
Sbjct: 90 IRSDYGYGDAGSPPKIPGGATLIFEVEL 117
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 32/150 (21%)
Query: 3 DSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSF 62
+ + LT D GV+K I+R+ + + + V VHY G L +G+VFD++ E N F F
Sbjct: 7 EQVHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKF 66
Query: 63 ELGKGSVIRAWDIALRSM-KVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCK 121
LG+G VI+ WDI + SM K + CSV L S
Sbjct: 67 HLGQGEVIKGWDICVASMTKNEKCSVRLDS------------------------------ 96
Query: 122 PEYAYGSAGSPPDVPPDATLIFEVELVACR 151
+Y YG G +P ++ LIFE+EL++ R
Sbjct: 97 -KYGYGEEGCGESIPGNSVLIFEIELISFR 125
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 57/112 (50%), Gaps = 31/112 (27%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLW 96
VHY G+LA+ G+VFD++ F F +G+G VIR WD + M V
Sbjct: 25 VHYTGTLAD-GKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSV-------------- 69
Query: 97 GAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
G+ AKL C P+YAYGS G P +PP+ATL F+VEL+
Sbjct: 70 ----------------GQRAKLVCSPDYAYGSRGHPGVIPPNATLTFDVELL 105
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 31/115 (26%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCS 94
V+VHY G+L + G+ FD++ + + F F+LG+G VI+ WD +++MK
Sbjct: 33 VEVHYTGTLLD-GKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMK------------- 78
Query: 95 LWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVA 149
GE A T PE AYG +GSPP +P +ATL F+VEL++
Sbjct: 79 -----------------KGENALFTIPPELAYGESGSPPTIPANATLQFDVELLS 116
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 34/142 (23%)
Query: 10 DEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSV 69
D+ ++KK++++ + + +V V G L + H++ F F+ + +V
Sbjct: 243 DKKILKKVLKEX--EGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAV 300
Query: 70 IRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSA 129
I D A+ +MK GEVA +T PEYAYGS
Sbjct: 301 IEGLDRAVLNMKK------------------------------GEVALVTIPPEYAYGST 330
Query: 130 GSPPD--VPPDATLIFEVELVA 149
S D VPP++T+I+EVELV+
Sbjct: 331 ESKQDAIVPPNSTVIYEVELVS 352
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 54/157 (34%)
Query: 6 DLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFS---- 61
D+ D G+ KKI+++ D +D V V YE L ED TV S
Sbjct: 122 DIAKDGGIFKKILKEG--DKWENPKDPDEVFVKYEARL-----------EDGTVVSKSEG 168
Query: 62 --FELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLT 119
F + G + A A+++MK GE L
Sbjct: 169 VEFTVKDGHLCPALAKAVKTMKK------------------------------GEKVLLA 198
Query: 120 CKPEYAYGSAGSPPD-----VPPDATLIFEVELVACR 151
KP+Y +G G P VPP+A+L+ ++ELV+ +
Sbjct: 199 VKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWK 235
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 31/115 (26%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCS 94
V+VHY G+L + G+ FD++ + + F F+LG+G VI+ WD +++MK
Sbjct: 49 VEVHYTGTLLD-GKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMK------------- 94
Query: 95 LWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVA 149
GE A T PE AYG +GSPP +P +ATL F+VEL++
Sbjct: 95 -----------------KGENALFTIPPELAYGESGSPPTIPANATLQFDVELLS 132
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 34/142 (23%)
Query: 10 DEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSV 69
D+ ++KK++++ + + +V V G L + H++ F F+ + +V
Sbjct: 259 DKKILKKVLKEX--EGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAV 316
Query: 70 IRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSA 129
I D A+ +MK GEVA +T PEYAYGS
Sbjct: 317 IEGLDRAVLNMKK------------------------------GEVALVTIPPEYAYGST 346
Query: 130 GSPPD--VPPDATLIFEVELVA 149
S D VPP++T+I+EVELV+
Sbjct: 347 ESKQDAIVPPNSTVIYEVELVS 368
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 54/157 (34%)
Query: 6 DLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFS---- 61
D+ D G+ KKI+++ D +D V V YE L ED TV S
Sbjct: 138 DIAKDGGIFKKILKEG--DKWENPKDPDEVFVKYEARL-----------EDGTVVSKSEG 184
Query: 62 --FELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLT 119
F + G + A A+++MK GE L
Sbjct: 185 VEFTVKDGHLCPALAKAVKTMKK------------------------------GEKVLLA 214
Query: 120 CKPEYAYGSAGSPPD-----VPPDATLIFEVELVACR 151
KP+Y +G G P VPP+A+L+ ++ELV+ +
Sbjct: 215 VKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWK 251
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 32/150 (21%)
Query: 3 DSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSF 62
+ ++LT D GVIK I+++ + + V VHY G L TG+VFD++ + N F F
Sbjct: 8 EKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKF 67
Query: 63 ELGKGSVIRAWDIALRSM-KVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCK 121
L +G VI+ WDI + SM K + C V + S+
Sbjct: 68 HLEQGEVIKGWDICVSSMRKNEKCLVRIESM----------------------------- 98
Query: 122 PEYAYGSAGSPPDVPPDATLIFEVELVACR 151
Y YG G +P ++ L+FE+EL++ R
Sbjct: 99 --YGYGDEGCGESIPGNSVLLFEIELLSFR 126
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 32/150 (21%)
Query: 3 DSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSF 62
+ ++LT D GVIK I+++ + + V VHY G L TG+VFD++ + N F F
Sbjct: 8 EKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKF 67
Query: 63 ELGKGSVIRAWDIALRSM-KVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCK 121
L +G VI+ WDI + SM K + C V + S+
Sbjct: 68 HLEQGEVIKGWDICVSSMRKNEKCLVRIESM----------------------------- 98
Query: 122 PEYAYGSAGSPPDVPPDATLIFEVELVACR 151
Y YG G +P ++ L+FE+EL++ R
Sbjct: 99 --YGYGDEGCGESIPGNSVLLFEIELLSFR 126
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 56/112 (50%), Gaps = 31/112 (27%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLW 96
VHY G L E G+ FD++ + N F F LGK VIR W+ + M
Sbjct: 24 VHYTGML-EDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQM---------------- 66
Query: 97 GAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG+ AKLT P+YAYG+ G P +PP+ATLIF+VEL+
Sbjct: 67 --------------SVGQRAKLTISPDYAYGATGHPGIIPPNATLIFDVELL 104
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 55/112 (49%), Gaps = 31/112 (27%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLW 96
VHY G L E G+ FD++ + N F F LGK VIR W+ + M
Sbjct: 26 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQM---------------- 68
Query: 97 GAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG+ AKLT P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 69 --------------SVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 106
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 55/112 (49%), Gaps = 31/112 (27%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLW 96
VHY G L E G+ FD++ + N F F LGK VIR W+ + M
Sbjct: 24 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQM---------------- 66
Query: 97 GAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG+ AKLT P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 67 --------------SVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 55/112 (49%), Gaps = 31/112 (27%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLW 96
VHY G L E G+ FD++ + N F F LGK VIR W+ + M
Sbjct: 24 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQM---------------- 66
Query: 97 GAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG+ AKLT P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 67 --------------SVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 55/112 (49%), Gaps = 31/112 (27%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLW 96
VHY G L E G+ FD++ + N F F LGK VIR W+ + M
Sbjct: 24 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQM---------------- 66
Query: 97 GAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG+ AKLT P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 67 --------------SVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 55/112 (49%), Gaps = 31/112 (27%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLW 96
VHY G L E G+ FD++ + N F F LGK VIR W+ + M
Sbjct: 24 VHYTGML-EDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQM---------------- 66
Query: 97 GAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG+ AKLT P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 67 --------------SVGQRAKLTISPDYAYGATGVPGIIPPHATLVFDVELL 104
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 54/112 (48%), Gaps = 31/112 (27%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLW 96
VHY G L E G+ FD++ + N F F LGK VIR W + M V
Sbjct: 24 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSV-------------- 68
Query: 97 GAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
G+ AKLT P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 69 ----------------GQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 33/144 (22%)
Query: 5 IDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFEL 64
+D++GD GV+K ++R+ D ++P V V Y G L FD+ + T +L
Sbjct: 20 LDISGDRGVLKDVIREGAGDLVAPDAS---VLVKYSGYLEHMDRPFDSNYFRKTPRLMKL 76
Query: 65 GKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEY 124
G+ DI L M++ L S+ + GE+A+ KP Y
Sbjct: 77 GE-------DITLWGMELGLLSM-----------------------RRGELARFLFKPNY 106
Query: 125 AYGSAGSPPDVPPDATLIFEVELV 148
AYG+ G PP +PP+ T++FE+EL+
Sbjct: 107 AYGTLGCPPLIPPNTTVLFEIELL 130
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 54/112 (48%), Gaps = 31/112 (27%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLW 96
VHY G L E G+ FD++ + N F F LGK VIR W + M
Sbjct: 24 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQM---------------- 66
Query: 97 GAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG+ AKLT P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 67 --------------SVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 54/112 (48%), Gaps = 31/112 (27%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLW 96
VHY G L E G+ D++ + N F F LGK VIR W+ + M
Sbjct: 24 VHYTGML-EDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQM---------------- 66
Query: 97 GAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG+ AKLT P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 67 --------------SVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 54/112 (48%), Gaps = 31/112 (27%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLW 96
VHY G L E G+ D++ + N F F LGK VIR W+ + M
Sbjct: 24 VHYTGML-EDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQM---------------- 66
Query: 97 GAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG+ AKLT P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 67 --------------SVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 31/114 (27%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCS 94
V VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MK
Sbjct: 29 VSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGHVIKGWDEGVQGMK------------- 74
Query: 95 LWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG V +LT P+ YG+ G+ +PP+ATL+FEVEL+
Sbjct: 75 -----------------VGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 111
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 31/114 (27%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCS 94
V VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MK
Sbjct: 49 VSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMK------------- 94
Query: 95 LWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG V +LT P+ YG+ G+ +PP+ATL+FEVEL+
Sbjct: 95 -----------------VGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 131
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 31/114 (27%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCS 94
V VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MK
Sbjct: 125 VSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMK------------- 170
Query: 95 LWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG V +LT P+ YG+ G+ +PP+ATL+FEVEL+
Sbjct: 171 -----------------VGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELL 207
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 31/114 (27%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCS 94
V VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MK
Sbjct: 33 VSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMK------------- 78
Query: 95 LWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG V +LT P+ YG+ G+ +PP+ATL+FEVEL+
Sbjct: 79 -----------------VGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 115
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 55/112 (49%), Gaps = 31/112 (27%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLW 96
VHY G L E G+ FD++ + N F F LGK VIR ++ + M
Sbjct: 24 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQM---------------- 66
Query: 97 GAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG+ AKLT P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 67 --------------SVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 31/114 (27%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCS 94
V VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MK
Sbjct: 125 VSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMK------------- 170
Query: 95 LWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG V +LT P+ YG+ G+ +PP+ATL+FEVEL+
Sbjct: 171 -----------------VGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 207
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 31/114 (27%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCS 94
V VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MK
Sbjct: 125 VSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMK------------- 170
Query: 95 LWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG V +LT P+ YG+ G+ +PP+ATL+FEVEL+
Sbjct: 171 -----------------VGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 207
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 31/114 (27%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCS 94
V VHY G L + G+ FD++ + N F F LG G VI+ WD ++ MK
Sbjct: 125 VSVHYTGWLTD-GQKFDSSKDRNDPFEFVLGGGMVIKGWDEGVQGMK------------- 170
Query: 95 LWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG V +LT P+ YG+ G+ +PP+ATL+FEVEL+
Sbjct: 171 -----------------VGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 207
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 54/112 (48%), Gaps = 31/112 (27%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLW 96
VHY G L E G+ FD++ + N F F LGK VIR + + M
Sbjct: 24 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQM---------------- 66
Query: 97 GAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG+ AKLT P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 67 --------------SVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 31/112 (27%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLW 96
VHY G L + G+ FD++ + N F F +GK VI+ ++ M
Sbjct: 24 VHYTGML-QNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQM---------------- 66
Query: 97 GAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
+G+ AKLTC P+ AYG+ G P +PP+ATLIF+VEL+
Sbjct: 67 --------------SLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELL 104
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 31/114 (27%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCS 94
V VHY G L + G+ F ++ + N F+F LG G VI+ WD ++ MKV
Sbjct: 125 VSVHYTGWLTD-GQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV------------ 171
Query: 95 LWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
G V +LT P+ YG+ G+ +PP+ATL+FEVEL+
Sbjct: 172 ------------------GGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 207
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 31/116 (26%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCS 94
V VHY+G + G+ FD++ F F LG G VI+ WD + +M
Sbjct: 46 VTVHYDGRFPD-GKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMT------------- 91
Query: 95 LWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVAC 150
+GE A T + AYG G PP +PP ATL+FEVEL+A
Sbjct: 92 -----------------LGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLAV 130
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 31/136 (22%)
Query: 16 KIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDI 75
KI R + D + + LV +HY G+L E G+ FD++ + + F +G G VI+ WD+
Sbjct: 9 KIDRISPGDGATFPKTGDLVTIHYTGTL-ENGQKFDSSVDRGSPFQCNIGVGQVIKGWDV 67
Query: 76 ALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDV 135
+ + VGE A+LT YAYG G P +
Sbjct: 68 GIPKL------------------------------SVGEKARLTIPGPYAYGPRGFPGLI 97
Query: 136 PPDATLIFEVELVACR 151
PP++TL+F+VEL+
Sbjct: 98 PPNSTLVFDVELLKVN 113
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 51/120 (42%), Gaps = 31/120 (25%)
Query: 34 LVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVC 93
++ +HY G L E G FD++ N F F LG G VI+ WD L M C
Sbjct: 11 VLHMHYTGKL-EDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGM------------C 57
Query: 94 SLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRPR 153
GE KL E YG G+PP +P ATL+FEVEL+ R
Sbjct: 58 E------------------GEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERR 99
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 55/123 (44%), Gaps = 39/123 (31%)
Query: 34 LVDVHYEGSLAETGEVFDTT-------HEDNTVFSFELGKGSVIRAWDIALRSMKVKLCS 86
+V Y G+L + G VFDT ++ SF++G G VIR WD AL +M
Sbjct: 22 VVHCWYTGTLQD-GTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTM------ 74
Query: 87 VDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSP-PDVPPDATLIFEV 145
GE A+L +PE+AYG G P +PP+A L FEV
Sbjct: 75 ------------------------SKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEV 110
Query: 146 ELV 148
ELV
Sbjct: 111 ELV 113
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 55/123 (44%), Gaps = 39/123 (31%)
Query: 34 LVDVHYEGSLAETGEVFDTT-------HEDNTVFSFELGKGSVIRAWDIALRSMKVKLCS 86
+V Y G+L + G VFDT ++ SF++G G VIR WD AL +M
Sbjct: 25 VVHCWYTGTLPD-GTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTM------ 77
Query: 87 VDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSP-PDVPPDATLIFEV 145
GE A+L +PE+AYG G P +PP+ LIFEV
Sbjct: 78 ------------------------SKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEV 113
Query: 146 ELV 148
ELV
Sbjct: 114 ELV 116
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 31/114 (27%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCS 94
V VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MK
Sbjct: 29 VSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMK------------- 74
Query: 95 LWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 148
VG V +LT P+ YG+ G+ +PP+ATL+FEVEL+
Sbjct: 75 -----------------VGGVRRLTIPPQLGYGAGGAGGVIPPNATLVFEVELL 111
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 33/120 (27%)
Query: 34 LVDVHYEGSLAETGEVFDTTHEDNT--VFSFELGKGSVIRAWDIALRSMKVKLCSVDLFS 91
L+ VHYEG L + G +F +TH+ N F LG ++ WD L+ M C
Sbjct: 34 LMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGM----C------ 83
Query: 92 VCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACR 151
VGE KL P YG G +PP++TLIF ++L+ R
Sbjct: 84 --------------------VGEKRKLIIPPALGYGKEGK-GKIPPESTLIFNIDLLEIR 122
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 30/121 (24%)
Query: 34 LVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVC 93
L+ HY G L E G+VFD+++ +F +G G VI+ WD + L S + +
Sbjct: 32 LIKAHYVGKL-ENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGI------LGSDGIPPM- 83
Query: 94 SLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPD-----VPPDATLIFEVELV 148
L G K L I PE AYG G+ +PP + L+F++E +
Sbjct: 84 -LTGGKRTLRI----------------PPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126
Query: 149 A 149
Sbjct: 127 G 127
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 37/145 (25%)
Query: 8 TGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKG 67
T G++ ++V K +A +D V V+Y+G+L + G+ FD ++ SF L
Sbjct: 118 TSSTGLVYQVVEAGKGEA---PKDSDTVVVNYKGTLID-GKEFDNSYTRGEPLSFRLD-- 171
Query: 68 SVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYG 127
VI W L+++K L PE AYG
Sbjct: 172 GVIPGWTEGLKNIKKGGKIK------------------------------LVIPPELAYG 201
Query: 128 SAGSPPDVPPDATLIFEVELVACRP 152
AG P +PP++TL+F+VEL+ +P
Sbjct: 202 KAGVP-GIPPNSTLVFDVELLDVKP 225
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 36/147 (24%)
Query: 1 MGDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVF 60
M + +D+ G+ + KK + P + P + +V VH + SL E G T ++
Sbjct: 1 MREWLDILGNGLLRKKTLVPGPPGSSRPVKGQ-VVTVHLQTSL-ENG----TRVQEEPEL 54
Query: 61 SFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTC 120
F LG VI+A D+++ M VGE A +T
Sbjct: 55 VFTLGDCDVIQALDLSVPLM------------------------------DVGETAMVTA 84
Query: 121 KPEYAYGSAGSPPDVPPDATLIFEVEL 147
+Y YG G P +PP A L EV L
Sbjct: 85 DSKYCYGPQGRSPYIPPHAALCLEVTL 111
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 37/144 (25%)
Query: 8 TGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKG 67
T G++ ++V K +A +D V V+Y+G+L + G+ FD ++ SF L
Sbjct: 118 TSSTGLVYQVVEAGKGEA---PKDSDTVVVNYKGTLID-GKEFDNSYTRGEPLSFRLD-- 171
Query: 68 SVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYG 127
VI W L+++K L PE AYG
Sbjct: 172 GVIPGWTEGLKNIKKGGKIK------------------------------LVIPPELAYG 201
Query: 128 SAGSPPDVPPDATLIFEVELVACR 151
AG P +PP++TL+F+VEL+ +
Sbjct: 202 KAGVP-GIPPNSTLVFDVELLDVK 224
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding
Protein 8
Length = 118
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 36/143 (25%)
Query: 5 IDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFEL 64
+D+ G+ + KK + P + P + +V VH + SL E G T ++ F L
Sbjct: 7 LDILGNGLLRKKTLVPGPPGSSRPVKGQ-VVTVHLQTSL-ENG----TRVQEEPELVFTL 60
Query: 65 GKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEY 124
G VI+A D+++ M VGE A +T +Y
Sbjct: 61 GDCDVIQALDLSVPLM------------------------------DVGETAMVTADSKY 90
Query: 125 AYGSAGSPPDVPPDATLIFEVEL 147
YG G P +PP A L EV L
Sbjct: 91 CYGPQGRSPYIPPHAALCLEVTL 113
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 36/129 (27%)
Query: 36 DVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSL 95
+VHY G L + G VFD++ E +F VI+ W AL+ M+
Sbjct: 60 EVHYTGRLRD-GTVFDSSRERGKPTTFR--PNEVIKGWTEALQLMRE------------- 103
Query: 96 WGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRPRKG 155
G ++ L I + + AYG G +PP + L F+VEL++ K
Sbjct: 104 -GDRWRLFIPY----------------DLAYGVTGGGGMIPPYSPLEFDVELISI---KD 143
Query: 156 SSLGSVSEE 164
G +EE
Sbjct: 144 GGKGRTAEE 152
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 37/144 (25%)
Query: 5 IDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFEL 64
+D+ G+ + KK + P + P + +V VH + SL E G T ++ F L
Sbjct: 37 LDILGNGLLRKKTLVPGPPGSSRPVKGQ-VVTVHLQTSL-ENG----TRVQEEPELVFTL 90
Query: 65 GKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEY 124
G VI+A D+++ M V GE A +T +Y
Sbjct: 91 GDCDVIQALDLSVPLMDV------------------------------GETAMVTADSKY 120
Query: 125 AYGSAGS-PPDVPPDATLIFEVEL 147
YG GS P +PP A L EV L
Sbjct: 121 CYGPQGSRSPYIPPHAALCLEVTL 144
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 37/144 (25%)
Query: 5 IDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFEL 64
+D+ G+ + KK + P + P + +V VH + SL E G T ++ F L
Sbjct: 11 LDILGNGLLRKKTLVPGPPGSSRPVKGQ-VVTVHLQTSL-ENG----TRVQEEPELVFTL 64
Query: 65 GKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEY 124
G VI+A D+++ M VGE A +T +Y
Sbjct: 65 GDCDVIQALDLSVPLM------------------------------DVGETAMVTADSKY 94
Query: 125 AYGSAGS-PPDVPPDATLIFEVEL 147
YG GS P +PP A L EV L
Sbjct: 95 CYGPQGSRSPYIPPHAALCLEVTL 118
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 113 GEVAKLTCKPEYAYGSAGSPP-DVPPDATLIFEVELVACRPRKGS 156
GE + + KP YA+GS G +PP+A L +E+ L + K S
Sbjct: 91 GEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKES 135
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 113 GEVAKLTCKPEYAYGSAGSPP-DVPPDATLIFEVELVACRPRKGS 156
GE + + KP YA+GS G +PP+A L +E+ L + K S
Sbjct: 91 GEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKES 135
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 36/116 (31%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCS 94
V+V Y G L + G++FD + + F L SVI W AL++M
Sbjct: 138 VEVRYVGRLPD-GKIFDQSTQPQW---FRLD--SVISGWTSALQNMPT------------ 179
Query: 95 LWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVAC 150
GAK+ L+I + AYG+ G+ + P L+FE+EL+A
Sbjct: 180 --GAKWRLVI----------------PSDQAYGAEGAGDLIDPFTPLVFEIELIAV 217
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 113 GEVAKLTCKPEYAYGSAG--SPPDVPPDATLIFEVELVA 149
GE A + E AYG G S P+VPP A L++EVE++
Sbjct: 119 GERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIG 157
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 113 GEVAKLTCKPEYAYGSAG--SPPDVPPDATLIFEVELVA 149
GE A + E AYG G S P+VPP A L++EVE++
Sbjct: 119 GERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIG 157
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 27.3 bits (59), Expect = 6.3, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 110 YQVGEVAKLTCKPEYAYGSAGS--------PPDVPPDATLIFEVELVACRPRKGSSLGSV 161
Y+VGEV K +CKP + S PD+P I + ++ +C P G+V
Sbjct: 569 YKVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPDLP-----ICKEQVQSCGPPPELLNGNV 623
Query: 162 SEE 164
E+
Sbjct: 624 KEK 626
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 27.3 bits (59), Expect = 6.3, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 110 YQVGEVAKLTCKPEYAYGSAGS--------PPDVPPDATLIFEVELVACRPRKGSSLGSV 161
Y+VGEV K +CKP + S PD+P I + ++ +C P G+V
Sbjct: 569 YKVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPDLP-----ICKEQVQSCGPPPELLNGNV 623
Query: 162 SEE 164
E+
Sbjct: 624 KEK 626
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,422,300
Number of Sequences: 62578
Number of extensions: 218156
Number of successful extensions: 518
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 115
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)