Query         027810
Match_columns 218
No_of_seqs    221 out of 1387
Neff          4.6 
Searched_HMMs 46136
Date          Fri Mar 29 15:31:44 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027810hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 COG0545 FkpA FKBP-type peptidy  99.9 1.2E-26 2.5E-31  200.4  12.3  108    8-151    98-205 (205)
  2 KOG0544 FKBP-type peptidyl-pro  99.9 3.1E-26 6.6E-31  178.2  11.8  106   12-150     2-107 (108)
  3 KOG0549 FKBP-type peptidyl-pro  99.9   3E-24 6.5E-29  183.0  14.1  116    9-156    66-181 (188)
  4 PRK11570 peptidyl-prolyl cis-t  99.9 4.2E-23 9.1E-28  178.1  13.6  108    8-151    99-206 (206)
  5 TIGR03516 ppisom_GldI peptidyl  99.9 1.6E-22 3.4E-27  170.9  13.8  113    7-152    65-177 (177)
  6 KOG0552 FKBP-type peptidyl-pro  99.9   2E-21 4.3E-26  170.4  12.4  110    7-151   116-226 (226)
  7 PRK10902 FKBP-type peptidyl-pr  99.9 9.7E-21 2.1E-25  169.5  14.4  113    8-157   143-255 (269)
  8 PF00254 FKBP_C:  FKBP-type pep  99.8 9.9E-20 2.1E-24  135.5  11.3   89   28-148     5-94  (94)
  9 KOG0543 FKBP-type peptidyl-pro  99.8 3.4E-18 7.5E-23  159.8  19.1  129   10-175    83-214 (397)
 10 PRK15095 FKBP-type peptidyl-pr  99.6 7.7E-15 1.7E-19  121.7   9.0   71   29-130     5-75  (156)
 11 COG1047 SlpA FKBP-type peptidy  99.4 2.6E-12 5.6E-17  109.3  10.0   71   29-130     3-73  (174)
 12 TIGR00115 tig trigger factor.   99.4 3.2E-11 6.9E-16  111.7  17.6  126   28-192   146-283 (408)
 13 PRK10737 FKBP-type peptidyl-pr  99.4 3.9E-12 8.4E-17  109.9   9.5   69   30-130     4-72  (196)
 14 PRK01490 tig trigger factor; P  99.3 8.3E-11 1.8E-15  109.9  17.7  127   28-193   157-294 (435)
 15 COG0544 Tig FKBP-type peptidyl  99.3 1.7E-10 3.8E-15  109.8  16.0   88   29-157   158-247 (441)
 16 KOG0543 FKBP-type peptidyl-pro  99.1 2.1E-10 4.6E-15  107.9   6.5   83   19-149     1-83  (397)
 17 KOG0545 Aryl-hydrocarbon recep  98.1 5.2E-06 1.1E-10   75.5   6.4  168    6-179     5-188 (329)
 18 KOG0549 FKBP-type peptidyl-pro  96.2  0.0044 9.5E-08   53.8   3.6   56   62-151     1-56  (188)
 19 PLN02316 synthase/transferase   54.0      33 0.00071   37.0   6.5    8  116-123   203-210 (1036)
 20 PF15463 ECM11:  Extracellular   41.5 1.4E+02  0.0031   24.2   7.1   50  164-213    88-137 (139)
 21 COG1730 GIM5 Predicted prefold  36.4 1.8E+02  0.0039   24.4   7.0   47  162-208    97-143 (145)
 22 PLN02316 synthase/transferase   36.2 4.1E+02  0.0089   29.0  11.2   35   30-72    326-360 (1036)
 23 PRK12450 foldase protein PrsA;  34.2 2.2E+02  0.0047   26.0   7.9   23   60-82    193-215 (309)
 24 PTZ00399 cysteinyl-tRNA-synthe  28.6 1.5E+02  0.0032   30.3   6.3   37  169-205   551-587 (651)
 25 PRK00247 putative inner membra  28.1 1.6E+02  0.0035   28.8   6.2   21   97-117   248-268 (429)
 26 PF13019 Telomere_Sde2:  Telome  27.2 1.6E+02  0.0034   25.3   5.3   18  149-166   113-130 (162)
 27 PRK00247 putative inner membra  22.3 1.8E+02   0.004   28.4   5.4    7  163-169   324-330 (429)
 28 KOG4326 Mitochondrial F1F0-ATP  22.1 3.6E+02  0.0078   20.5   5.9    8  192-199    64-71  (81)
 29 PRK00059 prsA peptidylprolyl i  22.1   5E+02   0.011   23.3   7.9   16   67-82    251-266 (336)
 30 PF07946 DUF1682:  Protein of u  22.0 1.8E+02  0.0038   26.8   5.0   12  138-149   214-225 (321)
 31 PRK00083 frr ribosome recyclin  21.2 1.3E+02  0.0029   25.8   3.8   71   27-122    33-104 (185)
 32 PRK04405 prsA peptidylprolyl i  21.2 4.7E+02    0.01   23.7   7.6   21   62-82    194-214 (298)
 33 TIGR00496 frr ribosome recycli  21.1 1.4E+02   0.003   25.5   3.9   54   27-82     24-78  (176)
 34 KOG2738 Putative methionine am  21.1 1.4E+02  0.0031   28.5   4.2   59   16-83    185-252 (369)
 35 KOG1144 Translation initiation  20.1 3.1E+02  0.0068   29.5   6.7   25  188-212   257-281 (1064)

No 1  
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94  E-value=1.2e-26  Score=200.41  Aligned_cols=108  Identities=43%  Similarity=0.718  Sum_probs=101.3

Q ss_pred             cCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCCCccchhHHHHHhccccccccc
Q 027810            8 TGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSV   87 (218)
Q Consensus         8 t~d~gv~~kil~~G~g~~~~p~~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~~~~~~   87 (218)
                      +.++||+|++++.|+|..  |+. +++|.|||+|.+. ||++||++++++.|+.|.+|  .||+||.++|.+|++     
T Consensus        98 ~~~sgl~y~~~~~G~G~~--~~~-~~~V~vhY~G~l~-~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~v-----  166 (205)
T COG0545          98 TLPSGLQYKVLKAGDGAA--PKK-GDTVTVHYTGTLI-DGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKV-----  166 (205)
T ss_pred             ECCCCcEEEEEeccCCCC--CCC-CCEEEEEEEEecC-CCCccccccccCCCceeecC--CeeehHHHHHhhCCC-----
Confidence            467899999999999974  555 5999999999997 99999999999999999999  999999999999999     


Q ss_pred             cccceeeccchhhhhhhhhccccccCCEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeeee
Q 027810           88 DLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACR  151 (218)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~~l~iP~~~aYg~~g~~~~IP~~s~LiFeVeLl~i~  151 (218)
                                               |++++|+|||++|||..+.+..||||++|+|+|||++|.
T Consensus       167 -------------------------G~k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~  205 (205)
T COG0545         167 -------------------------GGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK  205 (205)
T ss_pred             -------------------------CceEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence                                     999999999999999999887899999999999999874


No 2  
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94  E-value=3.1e-26  Score=178.21  Aligned_cols=106  Identities=43%  Similarity=0.828  Sum_probs=100.1

Q ss_pred             CEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCCCccchhHHHHHhccccccccccccc
Q 027810           12 GVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFS   91 (218)
Q Consensus        12 gv~~kil~~G~g~~~~p~~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~~~~~~~~~~   91 (218)
                      ||.+.+|.+|+|. ..|.. |++|+|||++.+. ||+.||++.+++.|+.|.+|.+.||.||++++..|++         
T Consensus         2 Gv~~~~i~~Gdg~-tfpK~-Gqtvt~hYtg~L~-dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsv---------   69 (108)
T KOG0544|consen    2 GVEKQVISPGDGR-TFPKK-GQTVTVHYTGTLQ-DGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSV---------   69 (108)
T ss_pred             CceeEEeeCCCCc-ccCCC-CCEEEEEEEeEec-CCcEeecccccCCCeeEEecCcceeechhhcchhccc---------
Confidence            6899999999995 34654 6999999999997 9999999999999999999999999999999999999         


Q ss_pred             eeeccchhhhhhhhhccccccCCEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeee
Q 027810           92 VCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVAC  150 (218)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~Ge~~~l~iP~~~aYg~~g~~~~IP~~s~LiFeVeLl~i  150 (218)
                                           ||+++++|+|+|+||..+.|..||||++|+|+|||+++
T Consensus        70 ---------------------GekakLti~pd~aYG~~G~p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   70 ---------------------GEKAKLTISPDYAYGPRGHPGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ---------------------cccceeeeccccccCCCCCCCccCCCcEEEEEEEEEec
Confidence                                 99999999999999999999999999999999999987


No 3  
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92  E-value=3e-24  Score=182.95  Aligned_cols=116  Identities=36%  Similarity=0.648  Sum_probs=105.5

Q ss_pred             CCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCCCccchhHHHHHhcccccccccc
Q 027810            9 GDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVD   88 (218)
Q Consensus         9 ~d~gv~~kil~~G~g~~~~p~~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~~~~~~~   88 (218)
                      .++.|...++.. .......+..||+|.+||++.+. ||+.||+||.++.|++|.||.++||+||+++|.+|++      
T Consensus        66 ~~~~l~I~v~~~-p~~C~~kak~GD~l~~HY~g~le-DGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCv------  137 (188)
T KOG0549|consen   66 PDEELQIGVLKK-PEECPEKAKKGDTLHVHYTGSLE-DGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCV------  137 (188)
T ss_pred             CCCceeEEEEEC-CccccccccCCCEEEEEEEEEec-CCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCc------
Confidence            456788888877 33355678889999999999886 9999999999999999999999999999999999999      


Q ss_pred             ccceeeccchhhhhhhhhccccccCCEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeeeecCCCC
Q 027810           89 LFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRPRKGS  156 (218)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Ge~~~l~iP~~~aYg~~g~~~~IP~~s~LiFeVeLl~i~~~~~s  156 (218)
                                              ||+++++|||+++||+.|.++.||++++|+|+|||+++.+...+
T Consensus       138 ------------------------GEkRkl~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~~~~~  181 (188)
T KOG0549|consen  138 ------------------------GEKRKLIIPPHLGYGERGAPPKIPGDAVLIFDIELVKIERGPPE  181 (188)
T ss_pred             ------------------------ccceEEecCccccCccCCCCCCCCCCeeEEEEEEEEEeecCCCc
Confidence                                    99999999999999999999999999999999999999987554


No 4  
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.90  E-value=4.2e-23  Score=178.05  Aligned_cols=108  Identities=35%  Similarity=0.561  Sum_probs=100.6

Q ss_pred             cCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCCCccchhHHHHHhccccccccc
Q 027810            8 TGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSV   87 (218)
Q Consensus         8 t~d~gv~~kil~~G~g~~~~p~~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~~~~~~   87 (218)
                      +.++|++|+|+++|+|..  |.. +|.|.|||++++. ||++||+++..+.|++|.++  .+||||+++|.+|++     
T Consensus        99 ~t~sGl~y~vi~~G~G~~--p~~-~d~V~v~Y~g~l~-dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~-----  167 (206)
T PRK11570         99 STESGLQFRVLTQGEGAI--PAR-TDRVRVHYTGKLI-DGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPV-----  167 (206)
T ss_pred             ECCCCcEEEEEeCCCCCC--CCC-CCEEEEEEEEEEC-CCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCC-----
Confidence            467899999999999973  665 5999999999997 99999999988899999996  799999999999999     


Q ss_pred             cccceeeccchhhhhhhhhccccccCCEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeeee
Q 027810           88 DLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACR  151 (218)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~~l~iP~~~aYg~~g~~~~IP~~s~LiFeVeLl~i~  151 (218)
                                               |+++.|+|||+++||+.+.++.|||+++|+|+|||++|.
T Consensus       168 -------------------------G~k~~~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i~  206 (206)
T PRK11570        168 -------------------------GSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLEIL  206 (206)
T ss_pred             -------------------------CCEEEEEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEEC
Confidence                                     999999999999999999888999999999999999983


No 5  
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.89  E-value=1.6e-22  Score=170.94  Aligned_cols=113  Identities=21%  Similarity=0.307  Sum_probs=102.2

Q ss_pred             ccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCCCccchhHHHHHhcccccccc
Q 027810            7 LTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCS   86 (218)
Q Consensus         7 ~t~d~gv~~kil~~G~g~~~~p~~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~~~~~   86 (218)
                      .+.++|++|.++..+.|+...|.. ||.|.+||++++. ||++|++++. ..|+.|.+|.+.+|+||+++|.+|++    
T Consensus        65 ~~t~sGl~Y~v~~~~~g~g~~p~~-gd~V~v~Y~~~~~-dG~v~~ss~~-~~P~~f~vg~~~vi~Gl~e~L~~Mk~----  137 (177)
T TIGR03516        65 ETSQNGFWYYYNQKDTGEGTTPEF-GDLVTFEYDIRAL-DGDVIYSEEE-LGPQTYKVDQQDLFSGLRDGLKLMKE----  137 (177)
T ss_pred             eECCCccEEEEEEecCCCCCcCCC-CCEEEEEEEEEeC-CCCEEEeCCC-CCCEEEEeCCcchhHHHHHHHcCCCC----
Confidence            457899999999886666556765 5999999999998 9999999876 45999999999999999999999999    


Q ss_pred             ccccceeeccchhhhhhhhhccccccCCEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeeeec
Q 027810           87 VDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRP  152 (218)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~~l~iP~~~aYg~~g~~~~IP~~s~LiFeVeLl~i~~  152 (218)
                                                ||+++|++||++|||..+.+..||||++|+|+|+|++|++
T Consensus       138 --------------------------Ge~~~~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~~  177 (177)
T TIGR03516       138 --------------------------GETATFLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIKP  177 (177)
T ss_pred             --------------------------CCEEEEEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEecC
Confidence                                      9999999999999999998889999999999999999864


No 6  
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86  E-value=2e-21  Score=170.43  Aligned_cols=110  Identities=35%  Similarity=0.677  Sum_probs=100.6

Q ss_pred             ccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEeeccccCCceEE-EEeCCCccchhHHHHHhccccccc
Q 027810            7 LTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFS-FELGKGSVIRAWDIALRSMKVKLC   85 (218)
Q Consensus         7 ~t~d~gv~~kil~~G~g~~~~p~~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~-f~lG~g~vIpg~e~aL~~mk~~~~   85 (218)
                      .|-.+||+|..++-|+|+.  |.. |+.|.|||.|++..+|++||+++.. .++. |.+|.+.||+||+.+|.+|++   
T Consensus       116 ~tl~~Gl~y~D~~vG~G~~--a~~-G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkv---  188 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSGPS--AKK-GKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKV---  188 (226)
T ss_pred             eecCCCcEEEEEEecCCCC--CCC-CCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhcc---
Confidence            4668999999999999973  544 6999999999998899999998764 5788 999999999999999999999   


Q ss_pred             cccccceeeccchhhhhhhhhccccccCCEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeeee
Q 027810           86 SVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACR  151 (218)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~~l~iP~~~aYg~~g~~~~IP~~s~LiFeVeLl~i~  151 (218)
                                                 |++++|+|||+++||..+.+ .||||++|+|+|||+.|.
T Consensus       189 ---------------------------GGkRrviIPp~lgYg~~g~~-~IppnstL~fdVEL~~v~  226 (226)
T KOG0552|consen  189 ---------------------------GGKRRVIIPPELGYGKKGVP-EIPPNSTLVFDVELLSVK  226 (226)
T ss_pred             ---------------------------CCeeEEEeCccccccccCcC-cCCCCCcEEEEEEEEecC
Confidence                                       99999999999999999887 999999999999999873


No 7  
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.85  E-value=9.7e-21  Score=169.47  Aligned_cols=113  Identities=35%  Similarity=0.663  Sum_probs=102.0

Q ss_pred             cCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCCCccchhHHHHHhccccccccc
Q 027810            8 TGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSV   87 (218)
Q Consensus         8 t~d~gv~~kil~~G~g~~~~p~~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~~~~~~   87 (218)
                      +.++||+|+|+++|+|.  .|.. ||.|.|||++++. ||++||+++.++.|++|.++  .+||||+++|.+|++     
T Consensus       143 ~t~sGl~y~Vi~~G~G~--~p~~-gD~V~V~Y~g~l~-dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~-----  211 (269)
T PRK10902        143 TTSTGLLYKVEKEGTGE--APKD-SDTVVVNYKGTLI-DGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKK-----  211 (269)
T ss_pred             ECCCccEEEEEeCCCCC--CCCC-CCEEEEEEEEEeC-CCCEeeccccCCCceEEecC--CcchHHHHHHhcCCC-----
Confidence            46899999999999997  3654 5999999999997 99999999988889999986  799999999999999     


Q ss_pred             cccceeeccchhhhhhhhhccccccCCEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeeeecCCCCC
Q 027810           88 DLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRPRKGSS  157 (218)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~~l~iP~~~aYg~~g~~~~IP~~s~LiFeVeLl~i~~~~~s~  157 (218)
                                               |+++.|+||++++||..+.+ .||||++|+|+|+|++|++.+...
T Consensus       212 -------------------------Gek~~l~IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~~~~~~  255 (269)
T PRK10902        212 -------------------------GGKIKLVIPPELAYGKAGVP-GIPANSTLVFDVELLDVKPAPKAD  255 (269)
T ss_pred             -------------------------CcEEEEEECchhhCCCCCCC-CCCCCCcEEEEEEEEEeccCcccc
Confidence                                     99999999999999999865 799999999999999998764443


No 8  
>PF00254 FKBP_C:  FKBP-type peptidyl-prolyl cis-trans isomerase;  InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.82  E-value=9.9e-20  Score=135.54  Aligned_cols=89  Identities=45%  Similarity=0.845  Sum_probs=83.4

Q ss_pred             CCCCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCCCccchhHHHHHhccccccccccccceeeccchhhhhhhhhc
Q 027810           28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFS  107 (218)
Q Consensus        28 p~~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (218)
                      |. .||.|.|||++++. +|++|++++....+++|.+|.+.+|+||++||.+|++                         
T Consensus         5 ~~-~gd~V~i~y~~~~~-~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~-------------------------   57 (94)
T PF00254_consen    5 PK-EGDTVTIHYTGRLE-DGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKV-------------------------   57 (94)
T ss_dssp             BS-TTSEEEEEEEEEET-TSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBT-------------------------
T ss_pred             CC-CCCEEEEEEEEEEC-CCcEEEEeeecCcceeeeeccCccccchhhhcccccC-------------------------
Confidence            44 46999999999997 9999999988889999999999999999999999999                         


Q ss_pred             cccccCCEEEEEecCCCccCCCCC-CCCCCCCCcEEEEEEEe
Q 027810          108 SFYQVGEVAKLTCKPEYAYGSAGS-PPDVPPDATLIFEVELV  148 (218)
Q Consensus       108 ~~~~~Ge~~~l~iP~~~aYg~~g~-~~~IP~~s~LiFeVeLl  148 (218)
                           ||++.|++|++++||+.+. ++.||++++|+|+|+|+
T Consensus        58 -----Ge~~~~~vp~~~ayg~~~~~~~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   58 -----GEKREFYVPPELAYGEKGLEPPKIPPNSTLVFEIELL   94 (94)
T ss_dssp             -----TEEEEEEEEGGGTTTTTTBCTTTBTTTSEEEEEEEEE
T ss_pred             -----CCEeeeEeCChhhcCccccCCCCcCCCCeEEEEEEEC
Confidence                 9999999999999999887 45799999999999996


No 9  
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80  E-value=3.4e-18  Score=159.82  Aligned_cols=129  Identities=44%  Similarity=0.697  Sum_probs=108.4

Q ss_pred             CCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCC-CccchhHHHHHhcccccccccc
Q 027810           10 DEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGK-GSVIRAWDIALRSMKVKLCSVD   88 (218)
Q Consensus        10 d~gv~~kil~~G~g~~~~p~~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~-g~vIpg~e~aL~~mk~~~~~~~   88 (218)
                      |++|+++|+++|.|+...|.+ |..|.|||+|++. + .+|++.   .-.|.|.+|. ..+|.||+.||..|++      
T Consensus        83 Dg~iiKriir~G~gd~~~P~~-g~~V~v~~~G~~~-~-~~f~~~---~~~fe~~~Ge~~~vi~Gle~al~~M~~------  150 (397)
T KOG0543|consen   83 DGGIIKRIIREGEGDYSRPNK-GAVVKVHLEGELE-D-GVFDQR---ELRFEFGEGEDIDVIEGLEIALRMMKV------  150 (397)
T ss_pred             CCceEEeeeecCCCCCCCCCC-CcEEEEEEEEEEC-C-cceecc---ccceEEecCCccchhHHHHHHHHhcCc------
Confidence            999999999999997566766 5999999999995 4 488764   3347788887 4799999999999999      


Q ss_pred             ccceeeccchhhhhhhhhccccccCCEEEEEecCCCccC-CCCCCCCCCCCCcEEEEEEEeeee-cCCCCCCCChHHHHH
Q 027810           89 LFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYG-SAGSPPDVPPDATLIFEVELVACR-PRKGSSLGSVSEERA  166 (218)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~Ge~~~l~iP~~~aYg-~~g~~~~IP~~s~LiFeVeLl~i~-~~~~s~~~~~~e~~~  166 (218)
                                              ||.+.|+|+|.|+|| ..+.+|.|||+++|.|+|+|+++. ..+.+|... ++++.
T Consensus       151 ------------------------GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~-~~e~l  205 (397)
T KOG0543|consen  151 ------------------------GEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMF-AEERL  205 (397)
T ss_pred             ------------------------cceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccc-hHHHH
Confidence                                    999999999999999 566788999999999999999999 556666555 55677


Q ss_pred             hHHHHHHHH
Q 027810          167 RLEELKRQR  175 (218)
Q Consensus       167 ~l~e~~~~~  175 (218)
                      .....++++
T Consensus       206 ~~A~~~ke~  214 (397)
T KOG0543|consen  206 EAADRKKER  214 (397)
T ss_pred             HHHHHHHHh
Confidence            776666666


No 10 
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.58  E-value=7.7e-15  Score=121.73  Aligned_cols=71  Identities=27%  Similarity=0.441  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCCCccchhHHHHHhccccccccccccceeeccchhhhhhhhhcc
Q 027810           29 TEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSS  108 (218)
Q Consensus        29 ~~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (218)
                      ...++.|.+||++++. ||++||+|+..+.|+.|.+|.+.+|+||++||.+|++                          
T Consensus         5 i~~~~~V~v~Y~~~~~-dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~--------------------------   57 (156)
T PRK15095          5 VQSNSAVLVHFTLKLD-DGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKV--------------------------   57 (156)
T ss_pred             cCCCCEEEEEEEEEeC-CCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCC--------------------------
Confidence            3456999999999995 8999999987778999999999999999999999999                          


Q ss_pred             ccccCCEEEEEecCCCccCCCC
Q 027810          109 FYQVGEVAKLTCKPEYAYGSAG  130 (218)
Q Consensus       109 ~~~~Ge~~~l~iP~~~aYg~~g  130 (218)
                          |+++.|+|||+.+||...
T Consensus        58 ----Ge~~~v~ipp~~ayG~~d   75 (156)
T PRK15095         58 ----GDKKTFSLEPEAAFGVPS   75 (156)
T ss_pred             ----CCEEEEEEChHHhcCCCC
Confidence                999999999999999864


No 11 
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.38  E-value=2.6e-12  Score=109.27  Aligned_cols=71  Identities=34%  Similarity=0.490  Sum_probs=65.9

Q ss_pred             CCCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCCCccchhHHHHHhccccccccccccceeeccchhhhhhhhhcc
Q 027810           29 TEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSS  108 (218)
Q Consensus        29 ~~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (218)
                      .+.++.|.+||++++. ||++||+|....+|+.|.+|.+++||||++||.+|.+                          
T Consensus         3 i~k~~~V~i~Y~~~~~-dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~--------------------------   55 (174)
T COG1047           3 IEKGDVVSLHYTLKVE-DGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEV--------------------------   55 (174)
T ss_pred             ccCCCEEEEEEEEEec-CCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCC--------------------------
Confidence            4557999999999997 6999999987678999999999999999999999999                          


Q ss_pred             ccccCCEEEEEecCCCccCCCC
Q 027810          109 FYQVGEVAKLTCKPEYAYGSAG  130 (218)
Q Consensus       109 ~~~~Ge~~~l~iP~~~aYg~~g  130 (218)
                          |++..+.+||+.|||...
T Consensus        56 ----Ge~~~V~IpPE~AfGe~~   73 (174)
T COG1047          56 ----GEEFTVEIPPEDAFGEYD   73 (174)
T ss_pred             ----CceeEEEeCchHhcCCCC
Confidence                999999999999999864


No 12 
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.37  E-value=3.2e-11  Score=111.72  Aligned_cols=126  Identities=20%  Similarity=0.316  Sum_probs=96.9

Q ss_pred             CCCCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCCCccchhHHHHHhccccccccccccceeeccchhhhhhhhhc
Q 027810           28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFS  107 (218)
Q Consensus        28 p~~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (218)
                      |...||.|+|+|+++.  +|+.|+++  ...++.|.+|.+.+++||+++|.||++                         
T Consensus       146 ~~~~gD~V~v~~~~~~--dg~~~~~~--~~~~~~~~lg~~~~~~~~ee~L~G~k~-------------------------  196 (408)
T TIGR00115       146 AAEKGDRVTIDFEGFI--DGEAFEGG--KAENFSLELGSGQFIPGFEEQLVGMKA-------------------------  196 (408)
T ss_pred             ccCCCCEEEEEEEEEE--CCEECcCC--CCCCeEEEECCCCcchhHHHHhCCCCC-------------------------
Confidence            5677899999999987  89999986  457899999999999999999999999                         


Q ss_pred             cccccCCEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeeeecCCCCC------------CCChHHHHHhHHHHHHHH
Q 027810          108 SFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRPRKGSS------------LGSVSEERARLEELKRQR  175 (218)
Q Consensus       108 ~~~~~Ge~~~l~iP~~~aYg~~g~~~~IP~~s~LiFeVeLl~i~~~~~s~------------~~~~~e~~~~l~e~~~~~  175 (218)
                           |+++.|.+|+..+|+....     +|.++.|+|+|.+|+......            ..++.+.|..+.+...+.
T Consensus       197 -----Gd~~~~~v~~p~~~~~~~~-----~gk~~~f~v~i~~I~~~~~peldDefak~~~~~~~t~~elr~~ik~~l~~~  266 (408)
T TIGR00115       197 -----GEEKEIKVTFPEDYHAEEL-----AGKEATFKVTVKEVKEKELPELDDEFAKELGEEFETLEELKADIRKNLERE  266 (408)
T ss_pred             -----CCeeEEEecCccccCcccC-----CCCeEEEEEEEEEeccCCCCCCCHHHHHhcCCccCCHHHHHHHHHHHHHHH
Confidence                 9999999998888987654     789999999999998763332            245666666665555444


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 027810          176 ELAAAVKEEEKKKREEA  192 (218)
Q Consensus       176 ~~~~a~~~~~~~~~~~~  192 (218)
                      ....+......+..++.
T Consensus       267 ~~~~~~~~~~~~i~~~l  283 (408)
T TIGR00115       267 KKERAKNKLKEQLLDKL  283 (408)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444333


No 13 
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.35  E-value=3.9e-12  Score=109.85  Aligned_cols=69  Identities=22%  Similarity=0.351  Sum_probs=63.3

Q ss_pred             CCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCCCccchhHHHHHhccccccccccccceeeccchhhhhhhhhccc
Q 027810           30 EDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSF  109 (218)
Q Consensus        30 ~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (218)
                      ..++.|.++|+.++. +|++||+|.. ..|+.|.+|.+++||+|++||.+|++                           
T Consensus         4 ~~~~vV~l~Y~l~~~-dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~---------------------------   54 (196)
T PRK10737          4 AKDLVVSLAYQVRTE-DGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEV---------------------------   54 (196)
T ss_pred             CCCCEEEEEEEEEeC-CCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCC---------------------------
Confidence            345899999999996 8999999865 67999999999999999999999999                           


Q ss_pred             cccCCEEEEEecCCCccCCCC
Q 027810          110 YQVGEVAKLTCKPEYAYGSAG  130 (218)
Q Consensus       110 ~~~Ge~~~l~iP~~~aYg~~g  130 (218)
                         |++..|+|||+.|||...
T Consensus        55 ---Gd~~~v~l~peeAyGe~d   72 (196)
T PRK10737         55 ---GDKFDVAVGANDAYGQYD   72 (196)
T ss_pred             ---CCEEEEEEChHHhcCCCC
Confidence               999999999999999864


No 14 
>PRK01490 tig trigger factor; Provisional
Probab=99.33  E-value=8.3e-11  Score=109.91  Aligned_cols=127  Identities=21%  Similarity=0.320  Sum_probs=97.6

Q ss_pred             CCCCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCCCccchhHHHHHhccccccccccccceeeccchhhhhhhhhc
Q 027810           28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFS  107 (218)
Q Consensus        28 p~~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (218)
                      |...||.|+|+|+++.  +|+.|+++  ...+++|.+|.+.++|||+++|.||++                         
T Consensus       157 ~~~~gD~V~vd~~~~~--~g~~~~~~--~~~~~~~~lg~~~~~~~fee~L~G~k~-------------------------  207 (435)
T PRK01490        157 PAENGDRVTIDFVGSI--DGEEFEGG--KAEDFSLELGSGRFIPGFEEQLVGMKA-------------------------  207 (435)
T ss_pred             cCCCCCEEEEEEEEEE--CCEECcCC--CCCceEEEEcCCCcchhHHHHhCCCCC-------------------------
Confidence            6677899999999998  89999976  456899999999999999999999999                         


Q ss_pred             cccccCCEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeeeecCCCCCC-----------CChHHHHHhHHHHHHHHH
Q 027810          108 SFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRPRKGSSL-----------GSVSEERARLEELKRQRE  176 (218)
Q Consensus       108 ~~~~~Ge~~~l~iP~~~aYg~~g~~~~IP~~s~LiFeVeLl~i~~~~~s~~-----------~~~~e~~~~l~e~~~~~~  176 (218)
                           |+++.|.++++..|+....     +|.++.|+|+|.+|+......+           .++.+.|..+.+...++.
T Consensus       208 -----Ge~~~~~~~~p~~~~~~~l-----agk~~~f~v~v~~V~~~~~pel~Defak~~~~~~tleelk~~ik~~l~~~~  277 (435)
T PRK01490        208 -----GEEKTIDVTFPEDYHAEDL-----AGKEATFKVTVKEVKEKELPELDDEFAKKLGEFETLEELKADIRKNLEREK  277 (435)
T ss_pred             -----CCeeEEEecCccccccccC-----CCCeEEEEEEEEEeccCCCCCCCHHHHHhcCCcCCHHHHHHHHHHHHHHHH
Confidence                 9999998888888876544     7899999999999987633321           466666666666555555


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 027810          177 LAAAVKEEEKKKREEAK  193 (218)
Q Consensus       177 ~~~a~~~~~~~~~~~~~  193 (218)
                      ...+......+..++..
T Consensus       278 ~~~~~~~~~~~i~~~L~  294 (435)
T PRK01490        278 KEAQRAKVKEAVLDALV  294 (435)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55444444444444433


No 15 
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.26  E-value=1.7e-10  Score=109.83  Aligned_cols=88  Identities=28%  Similarity=0.450  Sum_probs=75.6

Q ss_pred             CCCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCCCccchhHHHHHhccccccccccccceeeccchhhhhhhhhcc
Q 027810           29 TEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSS  108 (218)
Q Consensus        29 ~~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (218)
                      .+.||.|+|+|.|+.  ||+.|.+.  ....+.|.||++++||||+++|.||++                          
T Consensus       158 a~~gD~v~IDf~g~i--Dg~~fegg--~ae~~~l~lGs~~fipgFe~~LvG~k~--------------------------  207 (441)
T COG0544         158 AENGDRVTIDFEGSV--DGEEFEGG--KAENFSLELGSGRFIPGFEDQLVGMKA--------------------------  207 (441)
T ss_pred             cccCCEEEEEEEEEE--cCeeccCc--cccCeEEEEcCCCchhhHHhhhccCcC--------------------------
Confidence            567899999999988  99999987  567899999999999999999999999                          


Q ss_pred             ccccCCEEE--EEecCCCccCCCCCCCCCCCCCcEEEEEEEeeeecCCCCC
Q 027810          109 FYQVGEVAK--LTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRPRKGSS  157 (218)
Q Consensus       109 ~~~~Ge~~~--l~iP~~~aYg~~g~~~~IP~~s~LiFeVeLl~i~~~~~s~  157 (218)
                          |+...  +++|.+|.-.+.       +|++..|.|+|.+|+.+.-..
T Consensus       208 ----Ge~k~i~vtFP~dy~a~~L-------aGK~a~F~V~vkeVk~~elpE  247 (441)
T COG0544         208 ----GEEKDIKVTFPEDYHAEEL-------AGKEATFKVKVKEVKKRELPE  247 (441)
T ss_pred             ----CCeeEEEEEcccccchhHh-------CCCceEEEEEEEEEeecCCCC
Confidence                99977  566666655554       789999999999998774443


No 16 
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06  E-value=2.1e-10  Score=107.85  Aligned_cols=83  Identities=46%  Similarity=0.882  Sum_probs=72.7

Q ss_pred             EcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCCCccchhHHHHHhccccccccccccceeeccch
Q 027810           19 RQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGA   98 (218)
Q Consensus        19 ~~G~g~~~~p~~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~~~~~~~~~~~~~~~~~   98 (218)
                      ++|+|+ .+|.. ||.|.+||++++. ||+.||+|.+ +.++.|.+|.+++|.||..++..|+.                
T Consensus         1 ~eg~g~-~~p~~-g~~v~~hytg~l~-dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~----------------   60 (397)
T KOG0543|consen    1 KEGTGT-ETPMT-GDKVEVHYTGTLL-DGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK----------------   60 (397)
T ss_pred             CCCCCc-cCCCC-CceeEEEEeEEec-CCeecccccC-CCceeeecCCCccccccccccccccc----------------
Confidence            367776 45655 6999999999998 9999999988 88999999999999999999999986                


Q ss_pred             hhhhhhhhccccccCCEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEee
Q 027810           99 KFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVA  149 (218)
Q Consensus        99 ~~~~~~~~~~~~~~Ge~~~l~iP~~~aYg~~g~~~~IP~~s~LiFeVeLl~  149 (218)
                                                  |+.++||.||++++|.|+|+|++
T Consensus        61 ----------------------------g~~~~pp~ip~~a~l~fe~el~D   83 (397)
T KOG0543|consen   61 ----------------------------GEAGSPPKIPSNATLLFEVELLD   83 (397)
T ss_pred             ----------------------------cccCCCCCCCCCcceeeeecccC
Confidence                                        45677889999999999999854


No 17 
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.12  E-value=5.2e-06  Score=75.54  Aligned_cols=168  Identities=20%  Similarity=0.216  Sum_probs=105.1

Q ss_pred             cccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCC-CcEeeccccCCceEEEEeCCCccchhHHHHHhcccccc
Q 027810            6 DLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAET-GEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVKL   84 (218)
Q Consensus         6 d~t~d~gv~~kil~~G~g~~~~p~~~gd~V~V~Y~g~l~~d-G~~fd~t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~~~   84 (218)
                      -.....||.+.|+..|+|. +..-.+|..|.+||.....++ ++++|+|..-+.|..+.+|..--.|-|+..|..|.+.-
T Consensus         5 a~l~~~gv~Kril~~G~g~-l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~E   83 (329)
T KOG0545|consen    5 ALLNVEGVKKRILHGGTGE-LPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHE   83 (329)
T ss_pred             hhccchhhhHhhccCCCcc-CccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhh
Confidence            3456789999999999997 666778899999999887644 56999999889999999999888999999999999932


Q ss_pred             ccc---ccc-ceeeccchhhhhhhhhccccccCCEEEEEe-------cCCCccCCCCCCCCCCCCCcEEEEEEEeeeecC
Q 027810           85 CSV---DLF-SVCSLWGAKFLLLILFSSFYQVGEVAKLTC-------KPEYAYGSAGSPPDVPPDATLIFEVELVACRPR  153 (218)
Q Consensus        85 ~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~Ge~~~l~i-------P~~~aYg~~g~~~~IP~~s~LiFeVeLl~i~~~  153 (218)
                      +..   |.. .|-|.+=++-+-.|.-  +=..-+.-+=.|       -...+|.+.+-  -...=+||+|.++|+.|..+
T Consensus        84 vaqF~~d~~~~vqYPfvsksLRdia~--GK~p~e~~~H~Cg~a~m~~~~glGyedLDe--L~knPqpL~FviellqVe~P  159 (329)
T KOG0545|consen   84 VAQFWCDTIHTVQYPFVSKSLRDIAQ--GKDPTEWHRHCCGLANMFAYHGLGYEDLDE--LQKNPQPLVFVIELLQVEAP  159 (329)
T ss_pred             HHHhhhhhhheeechhHHHHHHHHhc--CCCcchhhhhhhhhHHHHHhcCCChhhHHH--HhhCCCceEeehhhhhccCc
Confidence            221   111 1222221111111111  101111111111       12233332211  01122699999999999876


Q ss_pred             ----CCCCCCChHHHHHhHHHHHHHHHHHH
Q 027810          154 ----KGSSLGSVSEERARLEELKRQRELAA  179 (218)
Q Consensus       154 ----~~s~~~~~~e~~~~l~e~~~~~~~~~  179 (218)
                          .++|..+ ..++...-...+++....
T Consensus       160 ~qYq~e~Wqls-ddeKmkav~~l~q~GN~l  188 (329)
T KOG0545|consen  160 SQYQRETWQLS-DDEKMKAVPVLHQEGNRL  188 (329)
T ss_pred             hhhccccccCC-chHhhhhhHHHHHhhhhh
Confidence                5667666 345565556666666554


No 18 
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24  E-value=0.0044  Score=53.75  Aligned_cols=56  Identities=34%  Similarity=0.472  Sum_probs=44.2

Q ss_pred             EEeCCCccchhHHHHHhccccccccccccceeeccchhhhhhhhhccccccCCEEEEEecCCCccCCCCCCCCCCCCCcE
Q 027810           62 FELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLILFSSFYQVGEVAKLTCKPEYAYGSAGSPPDVPPDATL  141 (218)
Q Consensus        62 f~lG~g~vIpg~e~aL~~mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~~l~iP~~~aYg~~g~~~~IP~~s~L  141 (218)
                      |.+|.+.+||+++.++.+|+.                              |++.++++||+++||..+..    .-..+
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~------------------------------ge~rkvv~pp~l~fg~~~~~----~~~~~   46 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCN------------------------------GEKRKVVIPPHLGFGEGGRG----DLNIL   46 (188)
T ss_pred             CcccceEEecCHHHHhhhhhc------------------------------cccceeccCCcccccccccc----cccce
Confidence            357888999999999999999                              99999999999999965432    22346


Q ss_pred             EEEEEEeeee
Q 027810          142 IFEVELVACR  151 (218)
Q Consensus       142 iFeVeLl~i~  151 (218)
                      +|.+.++.+-
T Consensus        47 ~~~~~l~~~~   56 (188)
T KOG0549|consen   47 VITILLVLLF   56 (188)
T ss_pred             EEEeeeeehh
Confidence            6777766543


No 19 
>PLN02316 synthase/transferase
Probab=53.97  E-value=33  Score=37.02  Aligned_cols=8  Identities=38%  Similarity=0.364  Sum_probs=4.4

Q ss_pred             EEEEecCC
Q 027810          116 AKLTCKPE  123 (218)
Q Consensus       116 ~~l~iP~~  123 (218)
                      +.|.||++
T Consensus       203 ~~v~Vp~~  210 (1036)
T PLN02316        203 CKLHIPKE  210 (1036)
T ss_pred             EEEecCcc
Confidence            34666653


No 20 
>PF15463 ECM11:  Extracellular mutant protein 11
Probab=41.52  E-value=1.4e+02  Score=24.20  Aligned_cols=50  Identities=32%  Similarity=0.372  Sum_probs=41.8

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 027810          164 ERARLEELKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEAKKGQGKG  213 (218)
Q Consensus       164 ~~~~l~e~~~~~~~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  213 (218)
                      .-.+|.+.++.+....+.-+.+=..|.++.....+.+.+||+.=+..|.+
T Consensus        88 l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk~~G~e  137 (139)
T PF15463_consen   88 LMQKLKEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMKEGGKE  137 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            44567777888888888888899999999999999999999987777654


No 21 
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=36.43  E-value=1.8e+02  Score=24.37  Aligned_cols=47  Identities=23%  Similarity=0.208  Sum_probs=26.9

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027810          162 SEERARLEELKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEAKK  208 (218)
Q Consensus       162 ~e~~~~l~e~~~~~~~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~  208 (218)
                      ...+.+++++.+.++.-...-++-.+......+.+..+.++-.++.+
T Consensus        97 e~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~~  143 (145)
T COG1730          97 EFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQK  143 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33455666666666665555555555555666666666655555544


No 22 
>PLN02316 synthase/transferase
Probab=36.22  E-value=4.1e+02  Score=29.00  Aligned_cols=35  Identities=17%  Similarity=0.087  Sum_probs=20.5

Q ss_pred             CCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCCCccchh
Q 027810           30 EDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRA   72 (218)
Q Consensus        30 ~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~g~vIpg   72 (218)
                      ..|+.|+|.|.-..    ..+-    ....+.+..|-+...-+
T Consensus       326 ~aG~~v~lyYN~~~----~~L~----~~~~v~i~gg~N~W~~~  360 (1036)
T PLN02316        326 KAGDTVKLYYNRSS----GPLA----HSTEIWIHGGYNNWIDG  360 (1036)
T ss_pred             CCCCEEEEEECCCC----CCCC----CCCcEEEEEeEcCCCCC
Confidence            45799999997432    2222    23567777775554443


No 23 
>PRK12450 foldase protein PrsA; Reviewed
Probab=34.21  E-value=2.2e+02  Score=25.97  Aligned_cols=23  Identities=17%  Similarity=0.271  Sum_probs=18.3

Q ss_pred             EEEEeCCCccchhHHHHHhcccc
Q 027810           60 FSFELGKGSVIRAWDIALRSMKV   82 (218)
Q Consensus        60 ~~f~lG~g~vIpg~e~aL~~mk~   82 (218)
                      ..|.-|.++++|.|+.|+..|+.
T Consensus       193 ~~f~~~~~~l~~ef~~aa~~Lk~  215 (309)
T PRK12450        193 YTFDSGETTLPAEVVRAASGLKE  215 (309)
T ss_pred             ccccCCCCCCCHHHHHHHHcCCC
Confidence            34444556799999999999999


No 24 
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=28.57  E-value=1.5e+02  Score=30.33  Aligned_cols=37  Identities=27%  Similarity=0.437  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027810          169 EELKRQRELAAAVKEEEKKKREEAKAAAAARIQAKME  205 (218)
Q Consensus       169 ~e~~~~~~~~~a~~~~~~~~~~~~~~~a~~~~~~~~~  205 (218)
                      +++++++++..+..++...+.++.++.+.+.-++|.+
T Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (651)
T PTZ00399        551 EELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLE  587 (651)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666655554444444444444444444444443


No 25 
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=28.14  E-value=1.6e+02  Score=28.78  Aligned_cols=21  Identities=5%  Similarity=0.032  Sum_probs=12.7

Q ss_pred             chhhhhhhhhccccccCCEEE
Q 027810           97 GAKFLLLILFSSFYQVGEVAK  117 (218)
Q Consensus        97 ~~~~~~~~~~~~~~~~Ge~~~  117 (218)
                      -.+.+|--+.++..-+|....
T Consensus       248 PaallLYWv~snlwtl~Qq~i  268 (429)
T PRK00247        248 PTAIALYWVANNLWTLIQNII  268 (429)
T ss_pred             hHHHHHHHHHhhHHHHHHHHH
Confidence            345556666666666666653


No 26 
>PF13019 Telomere_Sde2:  Telomere stability and silencing
Probab=27.22  E-value=1.6e+02  Score=25.29  Aligned_cols=18  Identities=39%  Similarity=0.722  Sum_probs=10.9

Q ss_pred             eeecCCCCCCCChHHHHH
Q 027810          149 ACRPRKGSSLGSVSEERA  166 (218)
Q Consensus       149 ~i~~~~~s~~~~~~e~~~  166 (218)
                      +|++-++.-+.++.+++.
T Consensus       113 scRdL~GRRlr~v~~~k~  130 (162)
T PF13019_consen  113 SCRDLSGRRLRTVNEEKK  130 (162)
T ss_pred             cccCCCCcChhhhHHHHH
Confidence            456666666777765533


No 27 
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=22.26  E-value=1.8e+02  Score=28.42  Aligned_cols=7  Identities=29%  Similarity=0.060  Sum_probs=2.5

Q ss_pred             HHHHhHH
Q 027810          163 EERARLE  169 (218)
Q Consensus       163 e~~~~l~  169 (218)
                      +.+....
T Consensus       324 ~~~~~~~  330 (429)
T PRK00247        324 ELHAENA  330 (429)
T ss_pred             HHHHHHH
Confidence            3333333


No 28 
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=22.14  E-value=3.6e+02  Score=20.54  Aligned_cols=8  Identities=38%  Similarity=0.115  Sum_probs=3.1

Q ss_pred             HHHHHHHH
Q 027810          192 AKAAAAAR  199 (218)
Q Consensus       192 ~~~~a~~~  199 (218)
                      +++.|..+
T Consensus        64 a~~eaR~L   71 (81)
T KOG4326|consen   64 AKDEARYL   71 (81)
T ss_pred             HHHHHHHH
Confidence            33344333


No 29 
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=22.08  E-value=5e+02  Score=23.33  Aligned_cols=16  Identities=6%  Similarity=0.057  Sum_probs=13.9

Q ss_pred             CccchhHHHHHhcccc
Q 027810           67 GSVIRAWDIALRSMKV   82 (218)
Q Consensus        67 g~vIpg~e~aL~~mk~   82 (218)
                      +.+.|.|..++..|+.
T Consensus       251 ~~l~~~~~~a~~~l~~  266 (336)
T PRK00059        251 SGYDKEFMDGAKALKE  266 (336)
T ss_pred             CccCHHHHHHHHcCCC
Confidence            5678889999999999


No 30 
>PF07946 DUF1682:  Protein of unknown function (DUF1682);  InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found. 
Probab=21.98  E-value=1.8e+02  Score=26.83  Aligned_cols=12  Identities=33%  Similarity=0.526  Sum_probs=6.0

Q ss_pred             CCcEEEEEEEee
Q 027810          138 DATLIFEVELVA  149 (218)
Q Consensus       138 ~s~LiFeVeLl~  149 (218)
                      -..++|.+.|-.
T Consensus       214 ~~~l~~~~~lp~  225 (321)
T PF07946_consen  214 KKRLIFSFRLPS  225 (321)
T ss_pred             CcEEEEEEEeCC
Confidence            345555555543


No 31 
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=21.24  E-value=1.3e+02  Score=25.79  Aligned_cols=71  Identities=21%  Similarity=0.267  Sum_probs=43.5

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCcEeec-cccCCceEEEEeCCCccchhHHHHHhccccccccccccceeeccchhhhhhhh
Q 027810           27 SPTEDLPLVDVHYEGSLAETGEVFDT-THEDNTVFSFELGKGSVIRAWDIALRSMKVKLCSVDLFSVCSLWGAKFLLLIL  105 (218)
Q Consensus        27 ~p~~~gd~V~V~Y~g~l~~dG~~fd~-t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~~~~~~~~~~~~~~~~~~~~~~~~  105 (218)
                      +|.. .|.|.|+|-|... -=..+-+ +..++..+.+...+.+.+...+.|+..-..     ++.|..  +         
T Consensus        33 ~p~l-ld~I~V~~yg~~~-pL~~lA~Isv~~~~~l~I~p~D~~~i~~I~kAI~~s~l-----gl~P~~--d---------   94 (185)
T PRK00083         33 NPSL-LDGIKVDYYGSPT-PLNQVASISVPEARTLLIQPWDKSMLKAIEKAIRASDL-----GLNPSN--D---------   94 (185)
T ss_pred             CHHH-cCCeEEEECCCCc-cHHHceeeecCCCCEEEEEeCCHhHHHHHHHHHHHCCC-----CCCccc--C---------
Confidence            4655 3889999965321 0011111 122445777777788889999999987555     333332  4         


Q ss_pred             hccccccCCEEEEEecC
Q 027810          106 FSSFYQVGEVAKLTCKP  122 (218)
Q Consensus       106 ~~~~~~~Ge~~~l~iP~  122 (218)
                             |..+++.+|+
T Consensus        95 -------g~~Iri~iP~  104 (185)
T PRK00083         95 -------GTVIRLPIPP  104 (185)
T ss_pred             -------CCEEEecCCC
Confidence                   7888888775


No 32 
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=21.23  E-value=4.7e+02  Score=23.73  Aligned_cols=21  Identities=14%  Similarity=0.180  Sum_probs=17.2

Q ss_pred             EEeCCCccchhHHHHHhcccc
Q 027810           62 FELGKGSVIRAWDIALRSMKV   82 (218)
Q Consensus        62 f~lG~g~vIpg~e~aL~~mk~   82 (218)
                      |..+.+.+.|.|+.++..|+.
T Consensus       194 ~~~~~~~l~~~f~~a~~~L~~  214 (298)
T PRK04405        194 FDSTDTTLDSTFKTAAFKLKN  214 (298)
T ss_pred             cccCCCCCCHHHHHHHHcCCC
Confidence            444456789999999999999


No 33 
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=21.06  E-value=1.4e+02  Score=25.46  Aligned_cols=54  Identities=20%  Similarity=0.204  Sum_probs=33.2

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCcEeec-cccCCceEEEEeCCCccchhHHHHHhcccc
Q 027810           27 SPTEDLPLVDVHYEGSLAETGEVFDT-THEDNTVFSFELGKGSVIRAWDIALRSMKV   82 (218)
Q Consensus        27 ~p~~~gd~V~V~Y~g~l~~dG~~fd~-t~~~~~~~~f~lG~g~vIpg~e~aL~~mk~   82 (218)
                      +|.. .|.|.|+|-|... --..+-+ +..++..+.+...+.+.+...+.||..-..
T Consensus        24 ~p~i-ld~I~V~~yg~~~-pL~~lA~vsv~~~~~l~I~p~D~~~~~~I~kAI~~s~l   78 (176)
T TIGR00496        24 NPSL-LDRILVEYYGAPT-PLRQLASVTVPDARTLVIQPFDKSNINAIEKAIQRSDL   78 (176)
T ss_pred             CHHH-hCCeEEEeCCCcc-cHHHceeeecCCCCEEEEecCChhhHHHHHHHHHHCCC
Confidence            3544 3789999865421 1011111 222445677777888889999999987655


No 34 
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=21.05  E-value=1.4e+02  Score=28.50  Aligned_cols=59  Identities=22%  Similarity=0.239  Sum_probs=39.0

Q ss_pred             EEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEeeccccCCceEEEEeCCC-----c----cchhHHHHHhccccc
Q 027810           16 KIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKG-----S----VIRAWDIALRSMKVK   83 (218)
Q Consensus        16 kil~~G~g~~~~p~~~gd~V~V~Y~g~l~~dG~~fd~t~~~~~~~~f~lG~g-----~----vIpg~e~aL~~mk~~   83 (218)
                      .++-.|-+| .+|.++||.|+|+.+.|+  +|---|      ..-+|-+|+-     .    .-..++.|+.-.+.+
T Consensus       185 EviCHGIPD-~RpLedGDIvNiDVtvY~--~GyHGD------lneTffvG~Vde~~k~LVkvT~EcL~kaI~~~kpG  252 (369)
T KOG2738|consen  185 EVICHGIPD-SRPLEDGDIVNIDVTVYL--NGYHGD------LNETFFVGNVDEKAKKLVKVTRECLEKAIAIVKPG  252 (369)
T ss_pred             heeecCCCC-cCcCCCCCEEeEEEEEEe--ccccCc------cccceEeeccCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            467778887 689999999999999999  663222      2345556541     1    124566666666654


No 35 
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=20.09  E-value=3.1e+02  Score=29.53  Aligned_cols=25  Identities=40%  Similarity=0.510  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCC
Q 027810          188 KREEAKAAAAARIQAKMEAKKGQGK  212 (218)
Q Consensus       188 ~~~~~~~~a~~~~~~~~~~~~~~~~  212 (218)
                      ..+++++...+.=.+|.+.+|..|+
T Consensus       257 ~~eEak~kkKekekek~er~KaeGk  281 (1064)
T KOG1144|consen  257 QEEEAKEKKKEKEKEKKERKKAEGK  281 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            3344555555555555666666554


Done!